Query psy952
Match_columns 573
No_of_seqs 487 out of 3402
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 21:43:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1214|consensus 100.0 9.7E-46 2.1E-50 380.8 23.8 287 5-298 978-1286(1289)
2 KOG1215|consensus 100.0 1.6E-30 3.4E-35 298.3 29.8 291 9-305 401-707 (877)
3 KOG1214|consensus 99.9 7.6E-26 1.6E-30 234.4 17.4 209 55-270 989-1207(1289)
4 KOG1215|consensus 99.9 9.1E-25 2E-29 250.8 21.3 270 132-444 1-293 (877)
5 PF08450 SGL: SMP-30/Gluconola 99.8 6E-19 1.3E-23 173.0 26.2 211 47-268 2-232 (246)
6 PLN02919 haloacid dehalogenase 99.8 2.2E-18 4.7E-23 198.7 30.5 213 42-255 565-840 (1057)
7 PLN02919 haloacid dehalogenase 99.8 8.2E-18 1.8E-22 193.9 32.4 234 17-252 580-892 (1057)
8 PF08450 SGL: SMP-30/Gluconola 99.8 1.8E-16 3.8E-21 155.5 26.9 211 16-236 11-244 (246)
9 COG3386 Gluconolactonase [Carb 99.6 2.8E-13 6E-18 134.9 22.7 209 41-258 21-252 (307)
10 KOG4659|consensus 99.6 6.9E-14 1.5E-18 152.3 19.2 225 14-246 373-689 (1899)
11 PF10282 Lactonase: Lactonase, 99.5 1.5E-10 3.2E-15 119.3 32.1 238 15-255 47-331 (345)
12 PRK11028 6-phosphogluconolacto 99.4 2E-10 4.4E-15 117.7 29.9 228 18-247 3-257 (330)
13 PF10282 Lactonase: Lactonase, 99.4 2.4E-10 5.2E-15 117.7 30.3 241 25-268 13-299 (345)
14 PRK11028 6-phosphogluconolacto 99.4 5.3E-10 1.1E-14 114.6 32.3 250 17-268 47-327 (330)
15 COG3386 Gluconolactonase [Carb 99.4 2.6E-10 5.7E-15 113.7 25.7 215 16-239 36-277 (307)
16 COG3391 Uncharacterized conser 99.4 2.7E-10 5.9E-15 118.6 26.3 237 27-268 13-260 (381)
17 COG3391 Uncharacterized conser 99.4 5.3E-10 1.2E-14 116.4 27.9 209 45-257 74-292 (381)
18 KOG4659|consensus 99.3 1.8E-10 3.8E-15 126.4 21.4 209 44-263 364-637 (1899)
19 TIGR03866 PQQ_ABC_repeats PQQ- 99.3 1E-08 2.3E-13 102.7 31.7 246 18-268 44-298 (300)
20 TIGR02604 Piru_Ver_Nterm putat 99.3 5.1E-10 1.1E-14 116.1 22.5 201 37-247 4-299 (367)
21 TIGR02604 Piru_Ver_Nterm putat 99.2 1.6E-09 3.5E-14 112.4 24.0 210 26-242 48-344 (367)
22 PF06977 SdiA-regulated: SdiA- 99.2 9.1E-09 2E-13 99.3 27.2 200 44-245 21-247 (248)
23 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 4E-08 8.6E-13 98.5 30.8 229 23-256 9-245 (300)
24 PF00057 Ldl_recept_a: Low-den 99.1 6E-11 1.3E-15 78.0 2.8 36 524-562 2-37 (37)
25 COG2706 3-carboxymuconate cycl 99.1 3.8E-07 8.3E-12 89.2 29.9 210 44-254 88-329 (346)
26 PF07995 GSDH: Glucose / Sorbo 99.1 2.3E-08 5E-13 102.0 22.8 217 44-268 1-313 (331)
27 TIGR02658 TTQ_MADH_Hv methylam 99.1 2.3E-07 5E-12 94.0 29.5 230 17-256 13-338 (352)
28 cd00112 LDLa Low Density Lipop 99.1 7E-11 1.5E-15 77.0 2.4 35 525-562 1-35 (35)
29 KOG1520|consensus 99.1 9.6E-09 2.1E-13 102.0 18.1 144 45-194 115-282 (376)
30 KOG1520|consensus 99.1 3.5E-09 7.6E-14 105.0 15.0 176 56-237 75-282 (376)
31 PF07995 GSDH: Glucose / Sorbo 99.0 4.9E-08 1.1E-12 99.7 22.5 222 17-244 13-331 (331)
32 COG4257 Vgb Streptogramin lyas 99.0 8.7E-08 1.9E-12 90.2 20.2 224 38-270 55-285 (353)
33 PRK04792 tolB translocation pr 99.0 6.3E-07 1.4E-11 95.6 29.2 226 26-257 199-433 (448)
34 COG2706 3-carboxymuconate cycl 98.9 1.7E-06 3.7E-11 84.7 28.4 227 24-251 15-279 (346)
35 TIGR03606 non_repeat_PQQ dehyd 98.9 4.3E-07 9.3E-12 94.8 25.5 158 35-197 20-250 (454)
36 KOG4499|consensus 98.9 2E-07 4.4E-12 85.8 18.2 193 48-256 18-249 (310)
37 COG4257 Vgb Streptogramin lyas 98.9 6.4E-07 1.4E-11 84.5 21.7 218 25-251 83-308 (353)
38 PF03022 MRJP: Major royal jel 98.9 1E-06 2.2E-11 87.8 24.8 186 46-237 2-254 (287)
39 TIGR02658 TTQ_MADH_Hv methylam 98.9 1E-06 2.2E-11 89.3 24.7 205 56-269 12-307 (352)
40 smart00192 LDLa Low-density li 98.9 1.5E-09 3.4E-14 69.7 2.8 32 525-557 2-33 (33)
41 PF00058 Ldl_recept_b: Low-den 98.9 5.4E-09 1.2E-13 71.3 5.6 42 142-185 1-42 (42)
42 PF06977 SdiA-regulated: SdiA- 98.8 8.4E-07 1.8E-11 85.7 22.1 176 24-203 43-247 (248)
43 PRK04922 tolB translocation pr 98.8 2.6E-06 5.5E-11 90.7 27.1 227 25-257 184-419 (433)
44 PRK04043 tolB translocation pr 98.8 6.2E-06 1.4E-10 86.9 29.3 224 25-257 169-408 (419)
45 TIGR02800 propeller_TolB tol-p 98.8 7.1E-06 1.5E-10 87.0 29.8 226 26-256 171-404 (417)
46 PRK05137 tolB translocation pr 98.8 4.4E-06 9.5E-11 89.0 28.1 226 25-256 182-419 (435)
47 COG3204 Uncharacterized protei 98.8 1.3E-06 2.8E-11 83.7 20.9 200 44-246 85-310 (316)
48 PRK03629 tolB translocation pr 98.8 7.1E-06 1.5E-10 87.1 29.2 227 25-257 179-414 (429)
49 PRK00178 tolB translocation pr 98.8 9.1E-06 2E-10 86.5 30.1 225 26-256 180-413 (430)
50 PRK02889 tolB translocation pr 98.7 1.2E-05 2.6E-10 85.4 29.6 227 25-257 176-411 (427)
51 PF02239 Cytochrom_D1: Cytochr 98.7 7.9E-06 1.7E-10 84.5 26.5 247 17-267 49-364 (369)
52 PF00058 Ldl_recept_b: Low-den 98.7 4.8E-08 1.1E-12 66.6 6.3 41 57-97 1-42 (42)
53 PF00057 Ldl_recept_a: Low-den 98.7 8.2E-09 1.8E-13 67.9 2.3 35 409-444 2-36 (37)
54 PF02239 Cytochrom_D1: Cytochr 98.7 8.7E-06 1.9E-10 84.2 25.1 217 17-237 6-236 (369)
55 cd00112 LDLa Low Density Lipop 98.7 1.1E-08 2.4E-13 66.6 2.3 34 410-444 1-34 (35)
56 TIGR03118 PEPCTERM_chp_1 conse 98.6 8.7E-06 1.9E-10 78.6 21.7 215 39-263 17-294 (336)
57 cd00200 WD40 WD40 domain, foun 98.6 0.00012 2.7E-09 71.3 30.6 242 8-257 13-258 (289)
58 PF03022 MRJP: Major royal jel 98.6 7.7E-06 1.7E-10 81.5 20.2 154 43-198 59-257 (287)
59 smart00192 LDLa Low-density li 98.5 6.8E-08 1.5E-12 62.1 2.7 32 410-442 2-33 (33)
60 PF12999 PRKCSH-like: Glucosid 98.5 1.6E-07 3.4E-12 83.9 4.8 79 454-568 35-120 (176)
61 PRK01742 tolB translocation pr 98.5 0.00015 3.2E-09 77.2 28.2 223 25-257 184-412 (429)
62 PF12999 PRKCSH-like: Glucosid 98.4 1.9E-07 4.2E-12 83.4 4.5 73 415-491 37-115 (176)
63 PRK01029 tolB translocation pr 98.4 0.00027 5.9E-09 74.9 28.7 224 25-254 165-409 (428)
64 TIGR03606 non_repeat_PQQ dehyd 98.4 2.6E-05 5.6E-10 81.7 20.3 155 82-240 24-251 (454)
65 PF03088 Str_synth: Strictosid 98.4 1.4E-06 3.1E-11 69.6 8.5 72 91-163 1-89 (89)
66 PRK04792 tolB translocation pr 98.4 7.6E-05 1.7E-09 79.7 23.7 185 25-214 242-433 (448)
67 PRK05137 tolB translocation pr 98.4 8.4E-05 1.8E-09 79.2 24.0 185 25-214 226-420 (435)
68 smart00135 LY Low-density lipo 98.4 1.1E-06 2.3E-11 60.4 5.7 38 172-209 5-42 (43)
69 TIGR03032 conserved hypothetic 98.3 0.00057 1.2E-08 66.8 25.3 207 17-237 18-260 (335)
70 PRK04922 tolB translocation pr 98.3 0.00016 3.4E-09 77.0 23.5 193 18-215 217-420 (433)
71 PF03088 Str_synth: Strictosid 98.3 3E-06 6.5E-11 67.7 7.6 72 133-207 1-88 (89)
72 smart00135 LY Low-density lipo 98.3 1.9E-06 4.2E-11 59.1 5.8 41 81-121 2-42 (43)
73 PRK04043 tolB translocation pr 98.2 0.00031 6.8E-09 74.1 24.0 189 56-251 155-360 (419)
74 cd00200 WD40 WD40 domain, foun 98.2 0.0015 3.2E-08 63.6 26.8 217 18-242 65-285 (289)
75 COG3204 Uncharacterized protei 98.2 0.00016 3.4E-09 69.7 18.6 167 25-194 108-301 (316)
76 TIGR02800 propeller_TolB tol-p 98.2 0.00051 1.1E-08 72.8 24.0 191 18-213 203-404 (417)
77 PRK03629 tolB translocation pr 98.1 0.001 2.2E-08 70.8 25.6 192 56-251 164-366 (429)
78 PRK02889 tolB translocation pr 98.1 0.00065 1.4E-08 72.2 24.1 193 56-252 164-364 (427)
79 PRK00178 tolB translocation pr 98.1 0.0009 2E-08 71.2 25.0 192 56-251 163-366 (430)
80 TIGR03118 PEPCTERM_chp_1 conse 98.1 0.00028 6.1E-09 68.4 18.3 182 82-270 17-253 (336)
81 PRK01029 tolB translocation pr 98.1 0.0015 3.2E-08 69.4 25.9 188 25-215 211-412 (428)
82 PF02333 Phytase: Phytase; In 98.0 0.0022 4.8E-08 65.4 23.0 193 15-209 66-293 (381)
83 KOG4499|consensus 98.0 0.003 6.5E-08 58.8 21.1 118 116-236 144-273 (310)
84 COG2133 Glucose/sorbosone dehy 97.9 0.0015 3.2E-08 67.1 20.9 160 87-247 176-396 (399)
85 PRK01742 tolB translocation pr 97.9 0.0031 6.8E-08 67.1 23.2 189 56-253 169-366 (429)
86 COG5276 Uncharacterized conser 97.7 0.023 4.9E-07 55.0 23.6 217 15-244 95-325 (370)
87 PF05096 Glu_cyclase_2: Glutam 97.7 0.032 7E-07 54.0 25.1 180 17-205 56-260 (264)
88 COG4247 Phy 3-phytase (myo-ino 97.7 0.021 4.6E-07 53.9 22.2 240 15-271 65-334 (364)
89 COG2133 Glucose/sorbosone dehy 97.7 0.0024 5.2E-08 65.6 17.5 160 44-207 176-398 (399)
90 COG4946 Uncharacterized protei 97.5 0.03 6.5E-07 57.3 22.5 172 18-195 334-508 (668)
91 PF02333 Phytase: Phytase; In 97.5 0.013 2.7E-07 60.0 20.2 194 49-247 58-289 (381)
92 PRK02888 nitrous-oxide reducta 97.5 0.0039 8.4E-08 67.1 16.4 182 56-249 141-352 (635)
93 COG0823 TolB Periplasmic compo 97.5 0.018 4E-07 60.6 21.4 225 25-254 173-407 (425)
94 PRK02888 nitrous-oxide reducta 97.4 0.015 3.3E-07 62.7 20.2 194 26-222 216-490 (635)
95 COG4946 Uncharacterized protei 97.4 0.021 4.6E-07 58.3 19.8 129 102-236 374-507 (668)
96 PF05096 Glu_cyclase_2: Glutam 97.3 0.18 4E-06 48.9 25.8 196 42-246 42-259 (264)
97 PF14670 FXa_inhibition: Coagu 97.3 0.00018 3.9E-09 46.8 2.2 29 274-305 6-35 (36)
98 PF13449 Phytase-like: Esteras 97.2 0.087 1.9E-06 53.7 21.9 163 42-207 17-252 (326)
99 TIGR03032 conserved hypothetic 97.1 0.053 1.2E-06 53.4 18.5 177 82-269 43-251 (335)
100 PF01436 NHL: NHL repeat; Int 97.1 0.0011 2.3E-08 40.7 4.3 28 175-203 1-28 (28)
101 PF13360 PQQ_2: PQQ-like domai 97.0 0.33 7.2E-06 46.6 26.2 180 56-252 36-234 (238)
102 PF01436 NHL: NHL repeat; Int 97.0 0.0014 3E-08 40.2 4.4 28 87-115 1-28 (28)
103 COG5276 Uncharacterized conser 97.0 0.17 3.7E-06 49.1 19.8 216 17-242 139-364 (370)
104 KOG0273|consensus 96.7 0.92 2E-05 46.8 24.7 152 5-160 236-390 (524)
105 KOG0315|consensus 96.7 0.63 1.4E-05 44.2 25.4 205 16-228 52-267 (311)
106 KOG0279|consensus 96.6 0.73 1.6E-05 44.4 24.2 205 45-256 64-270 (315)
107 KOG1446|consensus 96.6 0.85 1.8E-05 44.6 23.2 203 44-256 14-225 (311)
108 KOG2397|consensus 96.6 0.0022 4.9E-08 65.8 4.2 71 415-489 44-116 (480)
109 KOG0291|consensus 96.6 1.6 3.5E-05 47.7 25.2 147 44-196 350-499 (893)
110 COG0823 TolB Periplasmic compo 96.5 0.22 4.8E-06 52.5 19.0 163 48-216 150-324 (425)
111 KOG0285|consensus 96.4 0.53 1.1E-05 46.8 19.2 192 43-244 150-344 (460)
112 PRK13616 lipoprotein LpqB; Pro 96.4 1.3 2.8E-05 48.9 24.6 190 45-246 350-565 (591)
113 KOG0266|consensus 96.3 1.5 3.3E-05 47.0 24.3 124 23-148 223-353 (456)
114 PF13449 Phytase-like: Esteras 96.3 0.33 7.2E-06 49.5 18.4 106 86-195 18-166 (326)
115 PF06433 Me-amine-dh_H: Methyl 96.3 1.3 2.9E-05 44.6 21.7 183 15-207 105-321 (342)
116 PF02897 Peptidase_S9_N: Proly 96.3 1.9 4.1E-05 45.5 26.0 219 25-251 150-407 (414)
117 PF06433 Me-amine-dh_H: Methyl 96.3 1.5 3.3E-05 44.2 24.0 205 49-263 99-335 (342)
118 PTZ00421 coronin; Provisional 96.3 2.2 4.8E-05 46.1 29.8 224 24-252 97-334 (493)
119 KOG1219|consensus 96.2 0.098 2.1E-06 62.9 14.9 88 279-377 3877-3972(4289)
120 KOG0285|consensus 96.2 1.3 2.7E-05 44.3 20.4 238 8-256 155-397 (460)
121 PF05787 DUF839: Bacterial pro 96.2 0.19 4E-06 54.5 16.5 141 47-195 246-454 (524)
122 PF14583 Pectate_lyase22: Olig 96.2 1 2.3E-05 46.1 20.6 216 18-239 50-303 (386)
123 PTZ00421 coronin; Provisional 95.9 3.1 6.8E-05 45.0 33.2 116 44-161 75-198 (493)
124 COG3823 Glutamine cyclotransfe 95.9 0.96 2.1E-05 41.9 17.0 180 18-207 57-260 (262)
125 KOG1446|consensus 95.8 2.1 4.6E-05 42.0 27.8 237 17-258 27-272 (311)
126 PHA02713 hypothetical protein; 95.8 2.1 4.5E-05 47.2 22.7 210 27-247 274-532 (557)
127 PF01731 Arylesterase: Arylest 95.8 0.03 6.5E-07 44.5 6.1 34 172-205 50-83 (86)
128 PF14670 FXa_inhibition: Coagu 95.7 0.0055 1.2E-07 39.9 1.3 31 353-383 4-34 (36)
129 KOG0268|consensus 95.6 0.26 5.6E-06 49.0 13.1 156 87-246 187-345 (433)
130 PLN00181 protein SPA1-RELATED; 95.6 6 0.00013 45.7 28.6 196 45-246 484-688 (793)
131 PF05787 DUF839: Bacterial pro 95.5 0.12 2.6E-06 55.9 11.5 66 42-108 347-456 (524)
132 KOG4441|consensus 95.4 1.7 3.7E-05 47.9 20.1 183 47-237 325-530 (571)
133 PLN00181 protein SPA1-RELATED; 95.3 7.3 0.00016 45.0 30.5 156 45-206 533-690 (793)
134 COG4247 Phy 3-phytase (myo-ino 95.2 2.5 5.4E-05 40.4 17.6 107 105-215 119-246 (364)
135 PF13360 PQQ_2: PQQ-like domai 95.2 3 6.5E-05 39.9 21.6 175 17-209 37-233 (238)
136 PF02191 OLF: Olfactomedin-lik 95.1 1.1 2.4E-05 43.6 15.8 146 56-201 78-244 (250)
137 PF00930 DPPIV_N: Dipeptidyl p 95.1 1.7 3.8E-05 44.8 18.5 160 26-189 159-341 (353)
138 KOG0289|consensus 95.0 4.9 0.00011 41.2 23.3 197 44-246 303-503 (506)
139 KOG4328|consensus 95.0 1.8 3.8E-05 44.6 17.0 157 46-205 236-398 (498)
140 PF14583 Pectate_lyase22: Olig 94.9 1.9 4.2E-05 44.2 17.4 157 55-215 46-233 (386)
141 PF02897 Peptidase_S9_N: Proly 94.9 6 0.00013 41.7 24.8 193 49-248 128-357 (414)
142 KOG0268|consensus 94.9 0.62 1.3E-05 46.5 13.2 235 5-255 67-309 (433)
143 KOG4378|consensus 94.9 2.3 5.1E-05 44.2 17.6 198 5-210 80-284 (673)
144 PTZ00420 coronin; Provisional 94.9 7.6 0.00016 42.6 27.6 118 44-163 74-199 (568)
145 KOG2048|consensus 94.8 4.8 0.0001 43.5 20.4 201 3-207 381-602 (691)
146 PF00930 DPPIV_N: Dipeptidyl p 94.8 3.8 8.3E-05 42.2 20.0 93 132-228 237-336 (353)
147 KOG0318|consensus 94.8 6.3 0.00014 41.5 23.5 188 43-242 319-512 (603)
148 KOG2397|consensus 94.8 0.034 7.3E-07 57.4 4.4 44 524-568 77-125 (480)
149 KOG3509|consensus 94.7 0.036 7.9E-07 62.6 4.8 106 423-558 3-108 (964)
150 PTZ00420 coronin; Provisional 94.7 8.5 0.00018 42.3 26.3 220 24-249 96-334 (568)
151 PF12662 cEGF: Complement Clr- 94.6 0.021 4.5E-07 33.4 1.5 24 367-390 1-24 (24)
152 KOG4328|consensus 94.6 1.6 3.4E-05 45.0 15.6 198 44-246 186-397 (498)
153 PF07645 EGF_CA: Calcium-bindi 94.5 0.02 4.2E-07 38.9 1.3 34 346-380 2-37 (42)
154 TIGR02276 beta_rpt_yvtn 40-res 94.3 0.15 3.3E-06 34.1 5.7 41 98-138 2-42 (42)
155 KOG0270|consensus 94.2 6.5 0.00014 40.5 18.9 146 18-167 257-410 (463)
156 KOG0291|consensus 94.1 11 0.00025 41.4 27.6 208 45-260 266-478 (893)
157 PRK13616 lipoprotein LpqB; Pro 94.0 4.5 9.8E-05 44.7 19.1 160 26-196 380-559 (591)
158 KOG0286|consensus 94.0 6.7 0.00015 38.3 20.4 157 67-227 166-323 (343)
159 KOG0270|consensus 93.9 8.7 0.00019 39.6 19.1 155 48-214 247-412 (463)
160 KOG0266|consensus 93.9 11 0.00024 40.4 27.7 202 45-255 204-416 (456)
161 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.8 6.6 0.00014 42.9 19.9 50 49-106 238-287 (527)
162 KOG4378|consensus 93.7 6.4 0.00014 41.2 17.8 194 56-257 89-290 (673)
163 PF08662 eIF2A: Eukaryotic tra 93.4 6.7 0.00015 36.6 18.3 130 56-194 31-162 (194)
164 KOG0281|consensus 93.2 0.8 1.7E-05 45.4 10.2 193 44-256 197-396 (499)
165 smart00284 OLF Olfactomedin-li 93.0 5.3 0.00012 38.8 15.5 140 56-196 83-244 (255)
166 TIGR03300 assembly_YfgL outer 92.9 13 0.00028 38.5 25.7 61 187-252 241-301 (377)
167 PF07433 DUF1513: Protein of u 92.9 11 0.00024 37.6 23.5 158 94-254 57-253 (305)
168 TIGR02276 beta_rpt_yvtn 40-res 92.8 0.48 1.1E-05 31.6 6.0 41 55-96 2-42 (42)
169 KOG1539|consensus 92.7 17 0.00037 40.5 20.2 156 44-206 448-606 (910)
170 PF01731 Arylesterase: Arylest 92.7 0.32 7E-06 38.7 5.6 43 33-75 42-84 (86)
171 KOG0277|consensus 92.7 9.9 0.00021 36.5 18.0 165 1-166 6-185 (311)
172 KOG2106|consensus 92.1 16 0.00034 38.5 18.0 55 18-73 342-396 (626)
173 KOG0293|consensus 92.1 16 0.00034 37.5 19.3 203 45-258 270-480 (519)
174 KOG0282|consensus 91.9 7.7 0.00017 40.4 15.6 195 5-206 215-415 (503)
175 COG3823 Glutamine cyclotransfe 91.8 2.6 5.7E-05 39.2 11.0 66 95-161 181-259 (262)
176 PF07433 DUF1513: Protein of u 91.7 15 0.00033 36.6 25.0 224 16-247 17-284 (305)
177 KOG0315|consensus 91.6 13 0.00028 35.6 25.5 182 16-205 9-196 (311)
178 KOG0286|consensus 91.5 15 0.00032 36.0 26.6 209 43-258 96-313 (343)
179 KOG0293|consensus 91.5 16 0.00034 37.5 16.9 73 45-119 313-385 (519)
180 KOG0646|consensus 91.4 20 0.00043 37.3 20.1 196 47-251 84-310 (476)
181 KOG1274|consensus 91.2 30 0.00066 39.1 21.3 148 47-206 16-168 (933)
182 TIGR03300 assembly_YfgL outer 91.1 21 0.00046 36.9 26.4 106 141-256 241-346 (377)
183 cd00216 PQQ_DH Dehydrogenases 91.0 26 0.00056 37.9 24.8 30 224-254 401-430 (488)
184 KOG0650|consensus 91.0 8.7 0.00019 41.2 15.2 72 130-208 567-639 (733)
185 KOG0279|consensus 90.8 17 0.00036 35.4 22.3 204 47-256 18-230 (315)
186 KOG1407|consensus 90.8 16 0.00035 35.2 22.4 208 9-230 72-283 (313)
187 KOG3509|consensus 90.4 0.39 8.4E-06 54.7 5.3 79 405-486 27-107 (964)
188 KOG4649|consensus 90.4 18 0.00039 35.0 15.5 125 47-208 33-167 (354)
189 KOG0289|consensus 90.3 25 0.00053 36.4 19.5 178 17-202 316-501 (506)
190 TIGR03075 PQQ_enz_alc_DH PQQ-d 90.2 32 0.0007 37.6 21.0 20 131-150 388-407 (527)
191 PRK11138 outer membrane biogen 90.1 27 0.00058 36.5 25.3 104 141-254 256-359 (394)
192 KOG0281|consensus 89.8 4.6 9.9E-05 40.2 11.3 208 24-250 216-430 (499)
193 KOG0263|consensus 89.8 24 0.00053 38.9 17.8 182 17-206 464-649 (707)
194 KOG0308|consensus 89.7 19 0.00041 39.1 16.5 192 5-203 118-324 (735)
195 KOG0772|consensus 89.7 23 0.0005 37.4 16.7 199 43-244 166-390 (641)
196 KOG0272|consensus 89.6 27 0.00059 35.9 17.5 193 46-246 176-373 (459)
197 KOG0303|consensus 89.6 12 0.00027 38.0 14.3 159 45-209 132-297 (472)
198 KOG0294|consensus 89.6 23 0.0005 35.1 22.2 222 8-244 47-277 (362)
199 PRK11138 outer membrane biogen 89.5 30 0.00064 36.2 26.5 134 99-246 256-392 (394)
200 KOG4441|consensus 89.4 22 0.00049 39.2 18.0 163 26-195 350-530 (571)
201 COG1520 FOG: WD40-like repeat 89.3 15 0.00032 38.1 15.9 144 98-253 67-222 (370)
202 KOG0276|consensus 89.2 37 0.0008 36.9 18.9 156 44-205 13-170 (794)
203 KOG4649|consensus 89.0 21 0.00045 34.6 14.6 139 88-256 31-173 (354)
204 KOG0294|consensus 89.0 26 0.00056 34.8 21.2 210 44-269 43-258 (362)
205 PF10647 Gmad1: Lipoprotein Lp 88.8 25 0.00054 34.3 23.8 207 46-260 25-247 (253)
206 KOG0263|consensus 88.8 43 0.00093 37.1 19.8 190 46-246 453-647 (707)
207 KOG2048|consensus 88.7 41 0.00089 36.7 19.3 160 40-205 378-547 (691)
208 PF14339 DUF4394: Domain of un 88.6 24 0.00051 33.9 19.9 61 44-105 26-91 (236)
209 KOG3914|consensus 88.5 9.5 0.00021 38.8 12.8 160 89-255 64-230 (390)
210 KOG0646|consensus 88.4 35 0.00075 35.6 20.1 151 8-163 85-249 (476)
211 KOG2139|consensus 88.1 32 0.00069 34.8 18.8 197 46-246 197-429 (445)
212 COG3211 PhoX Predicted phospha 87.9 4.5 9.6E-05 43.3 10.5 107 43-149 415-573 (616)
213 KOG1036|consensus 87.8 30 0.00065 34.2 22.2 100 16-119 25-125 (323)
214 KOG0296|consensus 87.6 34 0.00074 34.6 23.8 115 5-121 107-223 (399)
215 KOG0308|consensus 87.3 49 0.0011 36.1 18.1 186 17-209 87-288 (735)
216 KOG0318|consensus 87.3 44 0.00095 35.5 25.5 217 45-271 191-416 (603)
217 KOG0276|consensus 87.2 49 0.0011 36.0 21.4 143 4-148 13-159 (794)
218 KOG0272|consensus 87.1 40 0.00086 34.8 19.5 217 43-270 216-440 (459)
219 KOG2110|consensus 86.8 38 0.00081 34.4 15.6 134 25-161 106-248 (391)
220 PF05694 SBP56: 56kDa selenium 86.5 15 0.00032 38.5 13.1 63 132-195 314-393 (461)
221 KOG2106|consensus 86.2 49 0.0011 35.0 22.2 161 88-256 330-497 (626)
222 KOG0310|consensus 86.0 48 0.001 34.7 21.7 209 25-242 90-303 (487)
223 KOG2055|consensus 85.7 49 0.0011 34.5 19.5 159 43-209 212-377 (514)
224 KOG0772|consensus 84.9 57 0.0012 34.6 17.3 193 16-215 227-465 (641)
225 PF08662 eIF2A: Eukaryotic tra 84.8 34 0.00073 31.9 16.7 118 25-147 39-161 (194)
226 KOG0319|consensus 84.5 71 0.0015 35.4 19.2 184 17-205 32-221 (775)
227 KOG2055|consensus 83.7 60 0.0013 33.9 18.7 77 2-78 211-291 (514)
228 KOG1517|consensus 82.6 52 0.0011 38.2 16.0 182 1-185 1161-1361(1387)
229 KOG1274|consensus 82.3 97 0.0021 35.3 22.8 197 9-214 20-226 (933)
230 KOG0282|consensus 82.3 29 0.00062 36.3 13.0 130 17-148 272-403 (503)
231 TIGR03074 PQQ_membr_DH membran 81.7 66 0.0014 36.9 17.0 101 133-244 378-483 (764)
232 KOG0292|consensus 81.5 1E+02 0.0023 35.1 20.2 134 41-194 247-384 (1202)
233 KOG0269|consensus 81.4 68 0.0015 35.8 15.9 161 47-210 42-211 (839)
234 PHA02713 hypothetical protein; 81.1 94 0.002 34.3 19.2 161 68-237 273-471 (557)
235 KOG1445|consensus 81.0 76 0.0016 34.7 15.7 136 24-161 602-750 (1012)
236 TIGR03074 PQQ_membr_DH membran 80.7 1.1E+02 0.0025 35.0 19.1 29 225-253 687-715 (764)
237 PF05694 SBP56: 56kDa selenium 80.7 21 0.00046 37.3 11.5 61 89-149 313-393 (461)
238 COG3211 PhoX Predicted phospha 80.0 17 0.00038 39.0 10.8 22 87-108 416-437 (616)
239 KOG0310|consensus 79.7 86 0.0019 33.0 22.2 112 47-160 71-183 (487)
240 KOG0273|consensus 78.7 91 0.002 32.8 19.4 153 45-206 236-391 (524)
241 PRK10115 protease 2; Provision 77.9 1.3E+02 0.0028 34.1 28.1 180 25-213 153-353 (686)
242 KOG0288|consensus 77.9 68 0.0015 33.1 13.7 109 57-169 312-425 (459)
243 PF05935 Arylsulfotrans: Aryls 77.7 1.1E+02 0.0023 33.0 17.5 156 98-258 112-311 (477)
244 KOG3914|consensus 77.4 80 0.0017 32.4 14.1 152 48-206 66-223 (390)
245 PHA02790 Kelch-like protein; P 77.2 1.1E+02 0.0024 33.0 21.3 173 55-237 270-454 (480)
246 KOG2139|consensus 77.2 89 0.0019 31.8 15.3 183 22-209 117-314 (445)
247 KOG2321|consensus 76.8 48 0.001 35.7 12.8 69 48-119 137-206 (703)
248 PF02191 OLF: Olfactomedin-lik 76.5 78 0.0017 30.8 16.3 130 18-150 80-239 (250)
249 KOG0284|consensus 75.3 76 0.0016 32.7 13.2 157 45-207 181-338 (464)
250 KOG0278|consensus 74.8 84 0.0018 30.3 15.1 144 45-200 144-291 (334)
251 KOG0306|consensus 74.3 1.5E+02 0.0033 33.1 18.4 151 46-204 510-662 (888)
252 PRK10115 protease 2; Provision 73.9 1.6E+02 0.0036 33.3 25.5 193 47-247 129-345 (686)
253 KOG1407|consensus 73.8 91 0.002 30.3 20.9 202 46-257 66-270 (313)
254 TIGR02171 Fb_sc_TIGR02171 Fibr 73.7 37 0.00081 38.9 11.8 94 56-151 319-422 (912)
255 KOG1219|consensus 73.3 5.7 0.00012 49.1 5.6 86 316-419 3872-3966(4289)
256 KOG0301|consensus 73.0 1.6E+02 0.0034 32.7 21.5 180 50-245 64-246 (745)
257 smart00179 EGF_CA Calcium-bind 73.0 3.6 7.8E-05 26.6 2.5 23 355-377 9-33 (39)
258 KOG0650|consensus 72.5 18 0.00039 38.9 8.5 116 44-163 521-639 (733)
259 KOG1408|consensus 72.4 1.6E+02 0.0035 32.8 15.5 92 179-271 600-694 (1080)
260 TIGR02171 Fb_sc_TIGR02171 Fibr 71.4 24 0.00051 40.4 9.7 99 98-199 318-424 (912)
261 KOG1272|consensus 71.3 16 0.00035 38.0 7.7 35 127-163 291-325 (545)
262 KOG0640|consensus 71.0 1.2E+02 0.0025 30.3 15.8 150 47-203 115-288 (430)
263 KOG3567|consensus 70.8 1.3 2.8E-05 45.8 -0.1 124 59-207 373-497 (501)
264 KOG2096|consensus 70.5 1.2E+02 0.0026 30.3 22.3 162 6-167 88-268 (420)
265 cd00216 PQQ_DH Dehydrogenases 70.0 1.7E+02 0.0036 31.7 22.6 33 180-212 221-270 (488)
266 KOG2111|consensus 69.4 1.3E+02 0.0028 30.1 16.2 142 19-163 107-258 (346)
267 KOG1273|consensus 69.1 1.3E+02 0.0028 30.1 20.8 228 24-258 44-290 (405)
268 COG1520 FOG: WD40-like repeat 69.1 1.4E+02 0.0031 30.7 19.4 144 55-210 67-222 (370)
269 COG3490 Uncharacterized protei 68.8 1.3E+02 0.0027 29.9 18.7 206 47-254 70-316 (366)
270 cd01475 vWA_Matrilin VWA_Matri 68.8 3.2 7E-05 39.7 2.2 35 347-382 188-222 (224)
271 KOG0274|consensus 68.3 1.9E+02 0.0041 31.7 21.8 220 24-258 227-451 (537)
272 KOG0284|consensus 68.2 47 0.001 34.2 10.0 139 16-158 193-334 (464)
273 KOG1517|consensus 66.9 1.3E+02 0.0028 35.2 13.9 176 50-232 1171-1364(1387)
274 PF03178 CPSF_A: CPSF A subuni 65.8 1.5E+02 0.0033 29.7 14.2 100 132-239 91-194 (321)
275 KOG0306|consensus 65.7 2.3E+02 0.0051 31.8 21.9 188 46-245 414-619 (888)
276 KOG4289|consensus 65.1 6.2 0.00013 46.5 3.6 76 288-373 1220-1306(2531)
277 PF06739 SBBP: Beta-propeller 65.1 5.5 0.00012 26.2 2.0 19 130-149 13-31 (38)
278 PF09910 DUF2139: Uncharacteri 64.7 67 0.0015 31.9 10.0 82 109-198 19-100 (339)
279 KOG0264|consensus 64.6 1.8E+02 0.004 30.2 17.5 114 47-161 180-303 (422)
280 KOG0292|consensus 64.5 2.7E+02 0.0058 32.1 23.7 142 49-213 211-355 (1202)
281 KOG0275|consensus 64.0 1.6E+02 0.0035 29.4 14.5 175 5-185 307-489 (508)
282 PF00780 CNH: CNH domain; Int 62.8 1.5E+02 0.0034 28.7 15.5 35 220-256 139-173 (275)
283 PF14870 PSII_BNR: Photosynthe 61.1 1.9E+02 0.004 29.1 20.9 176 46-229 105-285 (302)
284 KOG0645|consensus 60.5 1.7E+02 0.0038 28.6 20.0 191 22-215 34-238 (312)
285 KOG3621|consensus 60.5 2.8E+02 0.006 30.9 17.5 180 45-239 125-345 (726)
286 KOG0301|consensus 60.5 2.8E+02 0.006 30.9 19.9 196 24-236 80-277 (745)
287 KOG0271|consensus 59.5 2.2E+02 0.0047 29.4 16.7 34 46-80 117-150 (480)
288 KOG3545|consensus 58.5 1E+02 0.0022 29.7 10.0 136 56-194 77-236 (249)
289 KOG0321|consensus 57.8 2.4E+02 0.0051 31.1 13.3 72 45-117 101-174 (720)
290 KOG0269|consensus 57.5 3.3E+02 0.007 30.8 15.5 138 24-163 109-252 (839)
291 KOG4497|consensus 56.2 1E+02 0.0022 30.9 9.7 132 17-148 21-152 (447)
292 KOG0319|consensus 54.8 3.5E+02 0.0076 30.3 23.1 149 9-159 329-493 (775)
293 smart00284 OLF Olfactomedin-li 54.0 2.2E+02 0.0048 27.8 21.4 104 99-207 83-209 (255)
294 PF11134 Phage_stabilise: Phag 53.9 2.9E+02 0.0063 29.1 15.4 58 187-247 192-262 (469)
295 PF03178 CPSF_A: CPSF A subuni 53.7 1.6E+02 0.0035 29.5 11.6 60 16-77 98-161 (321)
296 KOG0299|consensus 53.6 2.9E+02 0.0063 29.1 20.4 58 8-65 206-265 (479)
297 KOG0639|consensus 53.5 3.1E+02 0.0067 29.3 13.9 157 6-169 468-630 (705)
298 KOG0973|consensus 53.4 4.2E+02 0.0092 30.9 19.0 73 45-119 130-202 (942)
299 KOG0278|consensus 53.0 2.2E+02 0.0049 27.6 15.6 104 130-243 185-292 (334)
300 KOG2111|consensus 52.6 2.6E+02 0.0056 28.1 21.0 153 90-249 97-257 (346)
301 KOG1272|consensus 52.2 56 0.0012 34.2 7.5 72 88-163 294-366 (545)
302 PF12947 EGF_3: EGF domain; I 52.1 4.6 0.0001 26.2 -0.0 25 353-377 4-30 (36)
303 PHA03098 kelch-like protein; P 51.3 3.6E+02 0.0077 29.4 19.0 88 56-148 342-444 (534)
304 PHA03098 kelch-like protein; P 49.9 3.7E+02 0.0081 29.2 21.2 174 55-238 293-496 (534)
305 smart00181 EGF Epidermal growt 48.9 13 0.00028 23.4 1.7 24 355-378 6-30 (35)
306 PF15416 DUF4623: Domain of un 48.3 3.1E+02 0.0067 27.8 15.7 65 55-119 192-272 (442)
307 KOG0283|consensus 47.9 4.6E+02 0.0099 29.6 18.4 115 41-160 406-531 (712)
308 PF00008 EGF: EGF-like domain 47.7 6.1 0.00013 24.8 -0.0 23 355-377 4-29 (32)
309 PF00780 CNH: CNH domain; Int 47.5 2.7E+02 0.0059 27.0 26.5 224 15-257 6-264 (275)
310 PF10647 Gmad1: Lipoprotein Lp 47.5 2.7E+02 0.006 27.0 19.4 165 24-195 47-228 (253)
311 PRK13684 Ycf48-like protein; P 47.0 3.3E+02 0.0071 27.7 24.9 197 47-256 92-295 (334)
312 COG1770 PtrB Protease II [Amin 46.9 4.5E+02 0.0099 29.3 23.1 201 45-254 129-354 (682)
313 PRK14131 N-acetylneuraminic ac 46.2 3.6E+02 0.0077 27.9 20.0 195 35-235 20-285 (376)
314 KOG0918|consensus 45.6 3.7E+02 0.0079 28.0 11.9 32 91-122 315-346 (476)
315 KOG2280|consensus 44.4 2.8E+02 0.006 31.3 11.6 103 41-149 40-154 (829)
316 KOG0288|consensus 44.2 3.9E+02 0.0085 27.8 16.4 83 177-260 343-429 (459)
317 PF05935 Arylsulfotrans: Aryls 43.4 4.5E+02 0.0098 28.3 17.4 158 54-215 111-310 (477)
318 COG4880 Secreted protein conta 43.1 4.2E+02 0.0091 27.9 14.1 27 96-122 156-182 (603)
319 KOG0313|consensus 42.9 3.9E+02 0.0086 27.5 13.5 95 23-119 279-377 (423)
320 KOG0277|consensus 42.9 3.3E+02 0.0071 26.6 14.8 98 24-122 82-184 (311)
321 TIGR03547 muta_rot_YjhT mutatr 42.3 3.8E+02 0.0083 27.1 22.8 51 55-106 62-125 (346)
322 PF13970 DUF4221: Domain of un 41.9 3.9E+02 0.0084 27.1 14.9 67 57-125 56-130 (333)
323 KOG4260|consensus 41.4 19 0.0004 34.8 2.1 84 286-378 213-305 (350)
324 KOG0296|consensus 41.4 4.1E+02 0.0089 27.2 18.6 164 88-257 65-229 (399)
325 KOG0307|consensus 41.0 4.6E+02 0.0099 30.9 13.1 215 47-267 58-303 (1049)
326 KOG4227|consensus 40.8 4.3E+02 0.0093 27.3 11.7 72 45-118 106-179 (609)
327 PF11134 Phage_stabilise: Phag 40.5 4.7E+02 0.01 27.6 18.9 191 50-247 139-362 (469)
328 KOG0275|consensus 40.4 3.9E+02 0.0086 26.8 14.9 86 180-266 397-485 (508)
329 TIGR03547 muta_rot_YjhT mutatr 40.1 4.1E+02 0.0089 26.9 20.7 91 56-148 17-125 (346)
330 PF09910 DUF2139: Uncharacteri 40.1 4E+02 0.0086 26.7 19.9 154 65-252 18-185 (339)
331 KOG1524|consensus 40.0 5.2E+02 0.011 28.0 17.9 118 24-148 125-246 (737)
332 PF08309 LVIVD: LVIVD repeat; 38.1 1.3E+02 0.0027 20.3 5.5 29 221-250 3-31 (42)
333 PF09064 Tme5_EGF_like: Thromb 37.8 25 0.00054 22.4 1.6 24 275-302 7-31 (34)
334 KOG1310|consensus 37.7 5.7E+02 0.012 27.8 14.1 137 8-145 54-216 (758)
335 COG4590 ABC-type uncharacteriz 37.2 1.2E+02 0.0027 31.8 7.3 39 172-212 354-392 (733)
336 KOG1226|consensus 36.6 1.9E+02 0.0041 32.6 9.0 120 348-482 468-604 (783)
337 KOG4283|consensus 36.3 4.5E+02 0.0097 26.2 18.4 52 25-77 25-76 (397)
338 KOG0299|consensus 36.0 5.5E+02 0.012 27.1 16.3 200 37-247 135-355 (479)
339 KOG1036|consensus 35.3 4.7E+02 0.01 26.1 21.7 151 42-205 11-162 (323)
340 PRK13684 Ycf48-like protein; P 35.2 5E+02 0.011 26.4 22.7 179 56-245 142-328 (334)
341 KOG0307|consensus 35.0 2.5E+02 0.0053 33.0 9.9 160 44-207 116-285 (1049)
342 KOG1034|consensus 35.0 4.4E+02 0.0096 26.7 10.4 110 9-118 98-211 (385)
343 PF14781 BBS2_N: Ciliary BBSom 34.5 66 0.0014 27.9 4.2 56 50-107 76-134 (136)
344 cd00054 EGF_CA Calcium-binding 34.5 34 0.00073 21.4 2.0 22 356-377 10-33 (38)
345 PF14251 DUF4346: Domain of un 34.0 1E+02 0.0022 26.0 5.0 53 132-197 9-61 (119)
346 KOG0283|consensus 33.9 7.4E+02 0.016 28.0 19.8 150 50-205 373-531 (712)
347 KOG0918|consensus 33.4 5.8E+02 0.013 26.6 11.5 30 47-76 314-343 (476)
348 PF10313 DUF2415: Uncharacteri 33.4 1.5E+02 0.0033 20.2 4.9 27 133-161 4-33 (43)
349 cd01475 vWA_Matrilin VWA_Matri 33.2 25 0.00054 33.5 1.7 28 274-304 195-223 (224)
350 COG3490 Uncharacterized protei 33.1 5.1E+02 0.011 25.9 13.0 137 48-195 38-181 (366)
351 KOG1645|consensus 33.0 5.9E+02 0.013 26.6 17.3 56 21-76 212-267 (463)
352 KOG0316|consensus 32.6 4.6E+02 0.01 25.3 17.1 198 43-253 16-218 (307)
353 PF14517 Tachylectin: Tachylec 32.0 4.6E+02 0.01 25.1 15.4 141 50-202 39-202 (229)
354 KOG3621|consensus 32.0 2.3E+02 0.0049 31.6 8.6 58 178-238 127-189 (726)
355 PF13570 PQQ_3: PQQ-like domai 31.5 72 0.0016 20.8 3.3 24 224-248 16-39 (40)
356 KOG1334|consensus 31.5 5.3E+02 0.011 27.6 10.8 193 61-256 203-432 (559)
357 PHA02790 Kelch-like protein; P 30.2 7.2E+02 0.016 26.7 20.5 126 55-195 317-454 (480)
358 PF14761 HPS3_N: Hermansky-Pud 29.5 4.9E+02 0.011 24.6 13.3 150 89-244 19-212 (215)
359 KOG0643|consensus 29.1 5.7E+02 0.012 25.2 22.4 171 30-207 38-221 (327)
360 KOG4260|consensus 27.9 39 0.00084 32.7 1.9 32 345-377 235-268 (350)
361 PF01011 PQQ: PQQ enzyme repea 26.6 1.1E+02 0.0023 19.8 3.4 23 230-253 1-23 (38)
362 PLN02153 epithiospecifier prot 26.3 6.9E+02 0.015 25.2 23.3 178 56-237 32-259 (341)
363 COG3292 Predicted periplasmic 25.8 9.2E+02 0.02 26.5 14.7 139 46-195 166-308 (671)
364 KOG1408|consensus 25.7 6.3E+02 0.014 28.5 10.5 73 87-161 37-110 (1080)
365 KOG1539|consensus 25.7 1.1E+03 0.023 27.2 26.5 90 180-269 249-343 (910)
366 KOG1538|consensus 25.7 9.8E+02 0.021 26.8 17.8 59 9-70 19-78 (1081)
367 KOG0274|consensus 25.6 9.2E+02 0.02 26.5 23.7 218 24-256 270-490 (537)
368 KOG1445|consensus 25.6 9.6E+02 0.021 26.7 13.7 172 26-207 653-845 (1012)
369 KOG0640|consensus 25.5 7E+02 0.015 25.1 16.3 105 7-116 175-289 (430)
370 PF15390 DUF4613: Domain of un 25.1 4.5E+02 0.0099 28.9 9.3 62 41-104 335-399 (671)
371 KOG3881|consensus 24.8 8E+02 0.017 25.5 17.7 111 131-246 204-317 (412)
372 PF04841 Vps16_N: Vps16, N-ter 24.2 8.5E+02 0.018 25.6 20.9 107 39-149 34-154 (410)
373 KOG3567|consensus 23.7 2.4E+02 0.0052 29.8 6.8 66 179-245 413-493 (501)
374 smart00564 PQQ beta-propeller 23.5 1.7E+02 0.0036 17.7 3.8 24 228-252 5-28 (33)
375 KOG2321|consensus 23.5 1E+03 0.022 26.2 18.4 147 49-206 56-205 (703)
376 KOG4532|consensus 23.2 7.3E+02 0.016 24.5 15.3 176 15-195 128-322 (344)
377 PF08553 VID27: VID27 cytoplas 23.2 1.2E+03 0.026 27.0 14.2 169 18-193 446-636 (794)
378 KOG0264|consensus 22.9 9E+02 0.019 25.4 15.3 125 24-148 199-335 (422)
379 PF05345 He_PIG: Putative Ig d 22.8 81 0.0018 22.0 2.3 22 128-149 9-30 (49)
380 KOG4289|consensus 22.8 1E+02 0.0022 37.2 4.3 45 325-377 1221-1269(2531)
381 PF06079 Apyrase: Apyrase; In 22.5 4.6E+02 0.0099 26.1 8.1 52 186-237 62-118 (291)
382 KOG4532|consensus 22.5 7.6E+02 0.016 24.4 13.5 121 132-258 161-292 (344)
383 KOG0303|consensus 21.8 9.2E+02 0.02 25.1 18.3 114 45-160 82-202 (472)
384 KOG0322|consensus 21.6 7.8E+02 0.017 24.2 9.8 56 88-144 252-308 (323)
385 KOG0295|consensus 21.4 9E+02 0.02 24.9 13.9 146 49-201 113-260 (406)
386 cd00053 EGF Epidermal growth f 21.3 60 0.0013 19.8 1.4 19 360-378 13-31 (36)
387 KOG0271|consensus 21.2 9.4E+02 0.02 25.0 20.1 155 25-184 137-297 (480)
388 PF08268 FBA_3: F-box associat 20.9 4.2E+02 0.0091 22.4 7.0 53 180-235 1-60 (129)
389 PF14251 DUF4346: Domain of un 20.8 2.3E+02 0.0049 24.0 4.8 49 92-149 11-59 (119)
390 TIGR03548 mutarot_permut cycli 20.5 8.5E+02 0.019 24.3 17.9 167 25-193 88-309 (323)
391 PF09000 Cytotoxic: Cytotoxic; 20.5 2.4E+02 0.0053 22.3 4.7 36 89-124 30-65 (85)
392 KOG1310|consensus 20.4 7.4E+02 0.016 27.0 9.6 112 47-160 53-177 (758)
393 KOG3658|consensus 20.3 2.7E+02 0.0058 31.0 6.5 17 408-426 564-580 (764)
394 PF04053 Coatomer_WDAD: Coatom 20.3 1.1E+03 0.023 25.2 14.3 223 25-271 2-242 (443)
No 1
>KOG1214|consensus
Probab=100.00 E-value=9.7e-46 Score=380.78 Aligned_cols=287 Identities=28% Similarity=0.500 Sum_probs=253.5
Q ss_pred CCCceeeCC-CCCCEEEEEecccEEEEEcCCCcee------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952 5 DESTCKRRD-SIKPWLIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST 77 (573)
Q Consensus 5 dg~~C~~~~-~~~~~l~~s~~~~I~~i~l~g~~~~------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~ 77 (573)
+++.|.... ..-.+|||++...|.++.|+|..+. ++....+-|+||+||-++.+|||+|+...+|.|+.|+|.
T Consensus 978 p~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~ 1057 (1289)
T KOG1214|consen 978 PTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGA 1057 (1289)
T ss_pred CCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCC
Confidence 556665543 3556999999999999999986542 344556678999999999999999999999999999999
Q ss_pred cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC-cCeE
Q psy952 78 EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL-QAYI 155 (573)
Q Consensus 78 ~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I 155 (573)
..++++..+|.+|+||||||+++++||||+...+|+|+.|||+.+++|+ ++|.+||+|++|+.+|.||||||.+ +++|
T Consensus 1058 Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR~iv~D~~rgnLYwtDWnRenPkI 1137 (1289)
T KOG1214|consen 1058 EPETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPRAIVVDPIRGNLYWTDWNRENPKI 1137 (1289)
T ss_pred CCceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcceEEeecccCceeeccccccCCcc
Confidence 9999999999999999999999999999999999999999999999998 7999999999999999999999975 7899
Q ss_pred EEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEe
Q psy952 156 GKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWT 235 (573)
Q Consensus 156 ~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywt 235 (573)
++.+|||.++++|+ .+++..||||+||+....|-|+|+++++++-+.++|..|+++..+ |.+||+|+-+++.+|||
T Consensus 1138 ets~mDG~NrRili--n~DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~gRR~i~~~--LqYPF~itsy~~~fY~T 1213 (1289)
T KOG1214|consen 1138 ETSSMDGENRRILI--NTDIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTGRRVIQNN--LQYPFSITSYADHFYHT 1213 (1289)
T ss_pred eeeccCCccceEEe--ecccCCCCCceeCcccceeeEEecCCcceeEecCCCCcchhhhhc--ccCceeeeeccccceee
Confidence 99999999999999 799999999999999999999999999999999999999998877 89999999999999999
Q ss_pred cCCCCceEEEeccCCcceEE-EcccCCCceeeeeeecC-----------CCcccccccccccCccceee-ecccee
Q psy952 236 DWNTKSINRADKFNGRDYRV-LRNTTHRPYDIHVYHPL-----------KGTTRHAWLTAHRGSTTVAD-MIRSVY 298 (573)
Q Consensus 236 d~~~~~I~~~~~~~g~~~~~-l~~~~~~p~~i~v~~~~-----------~~~Cs~lCl~~~~~~~~~~C-Cp~~~~ 298 (573)
||+.++|..+++..++.+.. +.......++|..+-++ .|+|.||||+.- +...| ||+..+
T Consensus 1214 DWk~n~vvsv~~~~~~~td~~~p~~~s~lyGItav~~~Cp~gstpCSedNGGCqHLCLpgq---ngavcecpdnvk 1286 (1289)
T KOG1214|consen 1214 DWKRNGVVSVNKHSGQFTDEYLPEQRSHLYGITAVYPYCPTGSTPCSEDNGGCQHLCLPGQ---NGAVCECPDNVK 1286 (1289)
T ss_pred ccccCceEEeeccccccccccccccccceEEEEeccccCCCCCCcccccCCcceeecccCc---CCccccCCccce
Confidence 99999999999988876543 33344568888765443 199999999765 55678 887554
No 2
>KOG1215|consensus
Probab=99.98 E-value=1.6e-30 Score=298.27 Aligned_cols=291 Identities=36% Similarity=0.682 Sum_probs=254.4
Q ss_pred eeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCC
Q psy952 9 CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSH 88 (573)
Q Consensus 9 C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~ 88 (573)
|++.....+||++++++.|+++.++...+..++.....+.++++|..++.+||+|.....|.+..+++.....+...++-
T Consensus 401 c~~~~~~~~~l~~s~~~~ir~~~~~~~~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~ 480 (877)
T KOG1215|consen 401 CEASDQPEAFLLFSNRHDIRRISLDCSDVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLC 480 (877)
T ss_pred ceecCCCCcEEEEecCccceecccCCCcceEEccCCccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCcc
Confidence 77766789999999999999999998766666677688999999999999999999999999999999877667788889
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 167 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~ 167 (573)
.|.+||+||+.+++||+|.....|.+.+++|..+++|+. .+..|+.++|+|.+++|||++|+..++|.|+.|||..+.+
T Consensus 481 ~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~ 560 (877)
T KOG1215|consen 481 IPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAV 560 (877)
T ss_pred ccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceE
Confidence 999999999999999999999999999999999888884 5688999999999999999999976699999999999999
Q ss_pred EEecCCCCCCCceEEEeccCCeEEEEeCCCC-eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 168 ILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~-~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
++ ..++.+|+||++|...+++||+|.... .|.+++++|..++++.... +++|++++++++++||+||....+.+..
T Consensus 561 l~--~~~~~~p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~~r~~~~~~~-~~~p~~~~~~~~~iyw~d~~~~~~~~~~ 637 (877)
T KOG1215|consen 561 LV--TNGILWPNGLTIDYETDRLYWADAKLDYTIESANMDGQNRRVVDSED-LPHPFGLSVFEDYIYWTDWSNRAISRAE 637 (877)
T ss_pred EE--eCCccCCCcceEEeecceeEEEcccCCcceeeeecCCCceEEecccc-CCCceEEEEecceeEEeeccccceEeee
Confidence 99 677999999999999999999999998 7999999999998333333 8999999999999999999999999999
Q ss_pred ccCCcceEEEcccCCCceeeeeee-cCC------------CcccccccccccCccceee-eccceeecCCCCC
Q psy952 247 KFNGRDYRVLRNTTHRPYDIHVYH-PLK------------GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE 305 (573)
Q Consensus 247 ~~~g~~~~~l~~~~~~p~~i~v~~-~~~------------~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~ 305 (573)
+..+.....+......|..++++| ... ++|+++|++.+. ..+| ||.++.+..+++.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~C~~~n~~c~~KOG~~p~---~~~c~c~~~~~l~~~~~~ 707 (877)
T KOG1215|consen 638 KHKGSDSRTSRSNLAQPLDIILVHHSSSRPTGVNPCESSNGGCSQLCLPRPQ---GSTCACPEGYRLSPDGKS 707 (877)
T ss_pred cccCCcceeeecccCcccceEEEeccccCCCCCCcccccCCCCCeeeecCCC---CCeeeCCCCCeecCCCCe
Confidence 888876223344456777777763 221 689999999992 2399 9999999887664
No 3
>KOG1214|consensus
Probab=99.94 E-value=7.6e-26 Score=234.43 Aligned_cols=209 Identities=23% Similarity=0.412 Sum_probs=183.2
Q ss_pred CCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cC
Q psy952 55 KENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TA 128 (573)
Q Consensus 55 ~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~ 128 (573)
...+|.++ ..++|.+..++|... .+++...-+.|.||+||-..++|||+|....+|.++.|.|...++++ ++
T Consensus 989 ~gt~LL~a--qg~~I~~lplng~~~~K~~ak~~l~~p~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~ 1066 (1289)
T KOG1214|consen 989 VGTFLLYA--QGQQIGYLPLNGTRLQKDAAKTLLSLPGSIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSG 1066 (1289)
T ss_pred CcceEEEe--ccceEEEeecCcchhchhhhhceEecccceeeeeecccccceEEEeecCCCccccccccCCCCceeeccc
Confidence 34556665 345799999988532 22344344789999999999999999999999999999999999988 79
Q ss_pred CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC--eEEEEeCC
Q psy952 129 IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD--YIASVDLD 206 (573)
Q Consensus 129 ~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~--~I~~~~~d 206 (573)
|..|.|||||...+.|||||. ...+|+++.|||+.+++|+ .++|..|.+|++|+..+.|||+||.+. +|++.++|
T Consensus 1067 L~SPEGiAVDh~~Rn~ywtDS-~lD~IevA~LdG~~rkvLf--~tdLVNPR~iv~D~~rgnLYwtDWnRenPkIets~mD 1143 (1289)
T KOG1214|consen 1067 LISPEGIAVDHIRRNMYWTDS-VLDKIEVALLDGSERKVLF--YTDLVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMD 1143 (1289)
T ss_pred CCCccceeeeeccceeeeecc-ccchhheeecCCceeeEEE--eecccCcceEEeecccCceeeccccccCCcceeeccC
Confidence 999999999999999999995 4779999999999999999 799999999999999999999999754 89999999
Q ss_pred CCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952 207 GKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH 270 (573)
Q Consensus 207 G~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~ 270 (573)
|.++++|+... +.-|.||++ +...|-|.|.+++++.-+. .+|..++++.+.++.||+|.-+.
T Consensus 1144 G~NrRilin~D-igLPNGLtfdpfs~~LCWvDAGt~rleC~~-p~g~gRR~i~~~LqYPF~itsy~ 1207 (1289)
T KOG1214|consen 1144 GENRRILINTD-IGLPNGLTFDPFSKLLCWVDAGTKRLECTL-PDGTGRRVIQNNLQYPFSITSYA 1207 (1289)
T ss_pred CccceEEeecc-cCCCCCceeCcccceeeEEecCCcceeEec-CCCCcchhhhhcccCceeeeecc
Confidence 99999999876 888999998 5678999999999999886 78999999999999999987654
No 4
>KOG1215|consensus
Probab=99.93 E-value=9.1e-25 Score=250.82 Aligned_cols=270 Identities=34% Similarity=0.642 Sum_probs=209.4
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEE
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 211 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 211 (573)
||.||++|..++|||++|+. . |+ +|+.++.++ ...+.||+|++||+...++||+|.+.+.|++.+++|+.++
T Consensus 1 pra~~~~p~~~~l~wtd~~~-~-i~----dg~~~~~~~--~~~~~~~ng~~id~~~~~~y~~d~~~~~i~~~~~dg~~r~ 72 (877)
T KOG1215|consen 1 PRAIALLPLEGLLFWTDWGA-N-IE----DGGERKILE--KEEFEWPNGLTIDLAWQRIYWADAKNDLIESANYDGSGRR 72 (877)
T ss_pred CceEEeccccceEEEecCCc-c-cc----cCcceEEee--ccceeCCCcceecchhheeeeccccCCceEEeccCCccce
Confidence 78999999999999999987 4 66 777777777 7899999999999999999999999999999999998876
Q ss_pred EEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeecCC-CcccccccccccCccce
Q psy952 212 IVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLK-GTTRHAWLTAHRGSTTV 290 (573)
Q Consensus 212 ~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~~~-~~Cs~lCl~~~~~~~~~ 290 (573)
+|++|++.+||+| +.|...+|.+|+...++......|+.++++++.. ..+...|...
T Consensus 73 ------------~l~~~~~~~y~~d---~~v~~~~~~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 130 (877)
T KOG1215|consen 73 ------------ALTLFEDGLYWTD---KSVSAANKKTGKDVTRLSQDSHFPLDIHAYHPSSQPLAPDPCAES------- 130 (877)
T ss_pred ------------eeeeeccceeecc---chhhhhccCCCCcceeehhcCCCCcceeEEecCCCCCCCCccccc-------
Confidence 8999999999999 8899999999999999887776799998888764 1111111111
Q ss_pred eeeccceeecCCCCCCCcccCCccccC--CCeeeecceeeCCcCCCCCCCCCCCCCCCccccC-CCCCcc-------CC-
Q psy952 291 ADMIRSVYLGSGNKENSTCSSSQFRCN--NGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAK-VETNQC-------GH- 359 (573)
Q Consensus 291 ~CCp~~~~l~~d~~~~~~C~~~~~~C~--~g~Ci~~~~~cd~~~~c~d~sde~~~c~~~~C~~-~~~~~C-------~~- 359 (573)
.......|...+|.|. +++|+|..|.||+..+|.+++||. .|....+.. ...+.| .-
T Consensus 131 -----------~~~~~~~~~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~-~~~~~~~~~~~~~~~~~~~~~~~d~~ 198 (877)
T KOG1215|consen 131 -----------GNGPCSHCCLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDEL-NCAVRRCEPRGASLDCIVAIKVCDIQ 198 (877)
T ss_pred -----------CCCCCccccCCCCCCcCccccCCCCceeCCCCCccccchhhh-cccccccCccccccccceeeeecCcc
Confidence 0111244556677887 789999999999999999999998 443221211 011222 11
Q ss_pred -ccccCCCCccccC-------CCCceecCCCcccccccccCCCCC-CCCCCC--CCCCCCCCCCCCceecCCCcccCCCc
Q psy952 360 -KCVDTLTGYYCEC-------NTGYKLLEDGKACTDIDECIEQPG-VCSQYP--AMCHNRPCDKDTEFACRNGHCIPKLW 428 (573)
Q Consensus 360 -~C~~~~~~~~C~C-------~~~f~c~~~~~c~~~~~~C~~~~~-~~~~~~--~~C~~~~C~~~~~f~C~~g~ci~~~~ 428 (573)
.|....++..+.. ...++|....+|+..++.|++..+ ....++ ..|....|... ++.|.++.|++..+
T Consensus 199 ~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~-e~~~~~~~~~~~~~ 277 (877)
T KOG1215|consen 199 HDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAP-EIECADGDCSDRQK 277 (877)
T ss_pred cccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCc-ceeecCCCCccceE
Confidence 4455555444433 256788777789999999999998 333333 46777778877 99999999999999
Q ss_pred ccCCCCCCCCCCCCCC
Q psy952 429 VCDFDNDCGDDSDEPA 444 (573)
Q Consensus 429 ~Cd~~~dC~d~sDE~~ 444 (573)
.|++..||.+++||..
T Consensus 278 ~~~g~~d~pdg~de~~ 293 (877)
T KOG1215|consen 278 LCDGDLDCPDGLDEDY 293 (877)
T ss_pred EecCccCCCCcccccc
Confidence 9999999999999974
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.84 E-value=6e-19 Score=173.04 Aligned_cols=211 Identities=22% Similarity=0.327 Sum_probs=162.3
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK 126 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~ 126 (573)
+.|++||..++.|||+|...++|+++++++...+.+.. ..|.|++++...++||+++.. .+.++++.....+++.
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~---~~~~G~~~~~~~g~l~v~~~~--~~~~~d~~~g~~~~~~ 76 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL---PGPNGMAFDRPDGRLYVADSG--GIAVVDPDTGKVTVLA 76 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES---SSEEEEEEECTTSEEEEEETT--CEEEEETTTTEEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec---CCCceEEEEccCCEEEEEEcC--ceEEEecCCCcEEEEe
Confidence 67999999999999999999999999998876654333 249999999777999999964 4555688776666665
Q ss_pred c------CCCCcceEEEeCCCceEEEEecCCc-------CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 127 T------AIQDPRGITLHPGIGYVYFSSWNLQ-------AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 127 ~------~~~~P~~Iavdp~~g~LYwtd~~~~-------~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
. .+..|+++++|+ .|.||+++.... +.|+|...+|. .+.+. ..+..|+||+++++++.||++
T Consensus 77 ~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~-~~~~~---~~~~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPDGK-VTVVA---DGLGFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETTSE-EEEEE---EEESSEEEEEEETTSSEEEEE
T ss_pred eccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCCCe-EEEEe---cCcccccceEECCcchheeec
Confidence 3 355699999999 688999986431 57999999944 33444 568999999999999999999
Q ss_pred eCCCCeEEEEeCCC--C---cEEEEEeCCc-cceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceee
Q psy952 194 DAHLDYIASVDLDG--K---HKHIVISGQK-VPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDI 266 (573)
Q Consensus 194 D~~~~~I~~~~~dG--~---~~~~l~~~~~-~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i 266 (573)
|+..++|++++++. . +++++..... ...|.||+++ ++.||++.+..++|.++++. |+....+......|..+
T Consensus 152 ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~ 230 (246)
T PF08450_consen 152 DSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNC 230 (246)
T ss_dssp ETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEE
T ss_pred ccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEE
Confidence 99999999999963 3 2355544221 3469999996 58899999999999999975 88777776555577666
Q ss_pred ee
Q psy952 267 HV 268 (573)
Q Consensus 267 ~v 268 (573)
++
T Consensus 231 ~f 232 (246)
T PF08450_consen 231 AF 232 (246)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 6
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.83 E-value=2.2e-18 Score=198.67 Aligned_cols=213 Identities=18% Similarity=0.208 Sum_probs=165.8
Q ss_pred cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-------------CCCCcceeEEeecCCcEEEEeCC
Q psy952 42 QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-------------DSHGLEGLAVDWVGRKLYWLDRH 108 (573)
Q Consensus 42 ~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-------------~~~~p~glavD~~~~~LY~td~~ 108 (573)
.++..|.+|++|..++.||++|..+++|++++++|.....+... .+..|.||++|..++.|||+|..
T Consensus 565 s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 565 SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 45677889999998999999999999999999988654433321 24679999999888889999999
Q ss_pred CCeEEEEEcCCCceeEecc-----------------CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe-
Q psy952 109 SKQLDVAELDGTNRKTLKT-----------------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT- 170 (573)
Q Consensus 109 ~~~I~~~~ldg~~~~~l~~-----------------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~- 170 (573)
+++|.++++.+..++++.. .+..|.+|+++|.++.||+++.+ ..+|.+.+.......++..
T Consensus 645 n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-~~~I~v~d~~~g~v~~~~G~ 723 (1057)
T PLN02919 645 NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-QHQIWEYNISDGVTRVFSGD 723 (1057)
T ss_pred CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-CCeEEEEECCCCeEEEEecC
Confidence 9999999998877766631 14579999999999999999965 5678888775544333321
Q ss_pred -----------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC--------------------Ccc
Q psy952 171 -----------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG--------------------QKV 219 (573)
Q Consensus 171 -----------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~--------------------~~~ 219 (573)
....+..|.||++++.+++||++|...++|.++++++....++..+ ..+
T Consensus 724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 0123678999999998889999999999999999986554433311 014
Q ss_pred ceeEEEeeeC-CeEEEecCCCCceEEEeccCCcceEE
Q psy952 220 PHVFALTLFE-DHIYWTDWNTKSINRADKFNGRDYRV 255 (573)
Q Consensus 220 ~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~~~~~ 255 (573)
.+|.||++.. +.||++|+.+++|.+++..++....+
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ti 840 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTL 840 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 5899999964 67999999999999999766654443
No 7
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.82 E-value=8.2e-18 Score=193.91 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=179.0
Q ss_pred CEEEEEe--cccEEEEEcCCCceeeccc--------------CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952 17 PWLIFSN--KYYVRNMSLDATQYSLVHQ--------------DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE 80 (573)
Q Consensus 17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~--------------~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 80 (573)
..|++++ .+.|++++++|.....+.. .+..|.||++|..++.|||+|..+++|+++++.++...
T Consensus 580 g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~ 659 (1057)
T PLN02919 580 NRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNETVR 659 (1057)
T ss_pred CeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEE
Confidence 4455554 5889999998864433221 24569999999988999999999999999998776665
Q ss_pred EEEcCC----------------CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec---------------cCC
Q psy952 81 RVIRHD----------------SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK---------------TAI 129 (573)
Q Consensus 81 ~i~~~~----------------~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~---------------~~~ 129 (573)
++...+ +..|.+|++|+.++.||+++..+++|.++++.+....++. ..+
T Consensus 660 tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~ 739 (1057)
T PLN02919 660 TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSF 739 (1057)
T ss_pred EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccc
Confidence 554321 4689999999989999999999999999998665444332 135
Q ss_pred CCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec-------------------CCCCCCCceEEEeccCCeE
Q psy952 130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-------------------EDDIAWPNALTLDYFTERL 190 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-------------------~~~l~~P~glaiD~~~~~L 190 (573)
..|.||+++|..++||++|.. ..+|.+.++++.....++.. ...+..|.||++|+ ++.|
T Consensus 740 ~~P~GIavspdG~~LYVADs~-n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~L 817 (1057)
T PLN02919 740 AQPSGISLSPDLKELYIADSE-SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQI 817 (1057)
T ss_pred cCccEEEEeCCCCEEEEEECC-CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcE
Confidence 679999999988889999965 67899999875443333210 01255799999995 5679
Q ss_pred EEEeCCCCeEEEEeCCCCcEEEEEeCC------------ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcc
Q psy952 191 YWADAHLDYIASVDLDGKHKHIVISGQ------------KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRD 252 (573)
Q Consensus 191 Yw~D~~~~~I~~~~~dG~~~~~l~~~~------------~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~ 252 (573)
|++|..+++|.+++.++.....+.... .+..|.||++. +++||++|..+++|.+++..++..
T Consensus 818 YVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 818 YVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 999999999999999877665554211 15689999995 578999999999999999877754
No 8
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.77 E-value=1.8e-16 Score=155.53 Aligned_cols=211 Identities=18% Similarity=0.201 Sum_probs=159.5
Q ss_pred CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-----CCC
Q psy952 16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-----DSH 88 (573)
Q Consensus 16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-----~~~ 88 (573)
...|++++ ...|+++++++......... .+.|++++..+++||+++... +.++++.....+.++.. .+.
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~--~~~G~~~~~~~g~l~v~~~~~--~~~~d~~~g~~~~~~~~~~~~~~~~ 86 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLP--GPNGMAFDRPDGRLYVADSGG--IAVVDPDTGKVTVLADLPDGGVPFN 86 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEESS--SEEEEEEECTTSEEEEEETTC--EEEEETTTTEEEEEEEEETTCSCTE
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEecC--CCceEEEEccCCEEEEEEcCc--eEEEecCCCcEEEEeeccCCCcccC
Confidence 46777776 57899999988766543222 299999997789999999754 44458777666666543 467
Q ss_pred CcceeEEeecCCcEEEEeCCC--------CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952 89 GLEGLAVDWVGRKLYWLDRHS--------KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~--------~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l 160 (573)
.|+++++|. .++||+++... +.|++++.+ ...+.+...+..|+||+++|..+.||+++.. ..+|+++.+
T Consensus 87 ~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~-~~~i~~~~~ 163 (246)
T PF08450_consen 87 RPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF-NGRIWRFDL 163 (246)
T ss_dssp EEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT-TTEEEEEEE
T ss_pred CCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc-cceeEEEec
Confidence 999999997 56799999654 579999999 4456667789999999999998899999964 678999999
Q ss_pred cCCC-----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeee---CCeE
Q psy952 161 DGSN-----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLF---EDHI 232 (573)
Q Consensus 161 dG~~-----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~l 232 (573)
+... +++++........|.||++|. +++||++.+..++|.+++.+|.....+... ..+|..+++- .+.|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~G~~~~~i~~p--~~~~t~~~fgg~~~~~L 240 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPDGKLLREIELP--VPRPTNCAFGGPDGKTL 240 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETTSCEEEEEE-S--SSSEEEEEEESTTSSEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCCccEEEEEcCC--CCCEEEEEEECCCCCEE
Confidence 7433 344442122223599999994 789999999999999999998877766654 4699999993 4679
Q ss_pred EEec
Q psy952 233 YWTD 236 (573)
Q Consensus 233 ywtd 236 (573)
|+|.
T Consensus 241 ~vTt 244 (246)
T PF08450_consen 241 YVTT 244 (246)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9985
No 9
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.58 E-value=2.8e-13 Score=134.92 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=149.1
Q ss_pred ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952 41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120 (573)
Q Consensus 41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~ 120 (573)
........|..|++..+.|||+|+..++|++++...+..+++...+ ..+.++.+| ..++|..++.+...+.+ -.+.
T Consensus 21 ~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~-~~~~~~~~d-~~g~Lv~~~~g~~~~~~--~~~~ 96 (307)
T COG3386 21 DKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPG-GFSSGALID-AGGRLIACEHGVRLLDP--DTGG 96 (307)
T ss_pred ecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCC-Ccccceeec-CCCeEEEEccccEEEec--cCCc
Confidence 3444456788899999999999999999999999755555554444 457788888 57788777755433332 2233
Q ss_pred ceeEecc-----CCCCcceEEEeCCCceEEEEecC-----C-----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952 121 NRKTLKT-----AIQDPRGITLHPGIGYVYFSSWN-----L-----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 185 (573)
Q Consensus 121 ~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~-----~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~ 185 (573)
.++.+.. .+..|+.+.++| .|.+|+++.+ . .+.|+|++.+|...+.+. ..+..||||++++
T Consensus 97 ~~t~~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~---~~~~~~NGla~Sp 172 (307)
T COG3386 97 KITLLAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD---DDLTIPNGLAFSP 172 (307)
T ss_pred eeEEeccccCCCCcCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec---CcEEecCceEECC
Confidence 3344432 346699999999 5899999876 2 347999998766655443 6699999999999
Q ss_pred cCCeEEEEeCCCCeEEEEeCC---CC--cEE-EEEeCCccceeEEEeeeCCeEEE--ecCCCCceEEEeccCCcceEEEc
Q psy952 186 FTERLYWADAHLDYIASVDLD---GK--HKH-IVISGQKVPHVFALTLFEDHIYW--TDWNTKSINRADKFNGRDYRVLR 257 (573)
Q Consensus 186 ~~~~LYw~D~~~~~I~~~~~d---G~--~~~-~l~~~~~~~~p~~ia~~~~~lyw--td~~~~~I~~~~~~~g~~~~~l~ 257 (573)
++..||++|+..++|++++++ |. +++ .+.....-..|.|++++.+..|| +-|...+|.++++. |+...++.
T Consensus 173 Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 173 DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 999999999999999999987 21 122 22222124689999998766555 45555589999865 77666554
Q ss_pred c
Q psy952 258 N 258 (573)
Q Consensus 258 ~ 258 (573)
.
T Consensus 252 l 252 (307)
T COG3386 252 L 252 (307)
T ss_pred C
Confidence 3
No 10
>KOG4659|consensus
Probab=99.58 E-value=6.9e-14 Score=152.31 Aligned_cols=225 Identities=17% Similarity=0.211 Sum_probs=165.7
Q ss_pred CCCCEEEEEecccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEE-cCCC----cceEEEcC
Q psy952 14 SIKPWLIFSNKYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSR-VGST----EKERVIRH 85 (573)
Q Consensus 14 ~~~~~l~~s~~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~-~~g~----~~~~i~~~ 85 (573)
++.+.|++.+.+.|+||..+|...+++.- ....-.-||++|..+.||++|....+|+|+. +.+. +.++++..
T Consensus 373 a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~ 452 (1899)
T KOG4659|consen 373 APDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGD 452 (1899)
T ss_pred cCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEecc
Confidence 56778899999999999999987665533 3344568999999999999999999999987 3332 44555544
Q ss_pred C--------------------CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc------------------
Q psy952 86 D--------------------SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT------------------ 127 (573)
Q Consensus 86 ~--------------------~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~------------------ 127 (573)
+ +..|.||||| ..++||++|.. .|.+++-+|-....+.+
T Consensus 453 Ge~Clp~desCGDGalA~dA~L~~PkGIa~d-k~g~lYfaD~t--~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~ 529 (1899)
T KOG4659|consen 453 GEVCLPADESCGDGALAQDAQLIFPKGIAFD-KMGNLYFADGT--RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVD 529 (1899)
T ss_pred CcCccccccccCcchhcccceeccCCceeEc-cCCcEEEeccc--EEEEeccCceEEEeccCCCCccCccccccccchhh
Confidence 3 6789999999 57899999964 58888887755443321
Q ss_pred -CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec------------------CCCCCCCceEEEeccCC
Q psy952 128 -AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH------------------EDDIAWPNALTLDYFTE 188 (573)
Q Consensus 128 -~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~------------------~~~l~~P~glaiD~~~~ 188 (573)
.+.+|..|||+|..+.||+.| ...|.|+..++..+ ++... ...+..|..||+. ..+
T Consensus 530 ~~leWPT~LaV~Pmdnsl~Vld---~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg-~~G 604 (1899)
T KOG4659|consen 530 LQLEWPTSLAVDPMDNSLLVLD---TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTLLIQRDIAVG-TDG 604 (1899)
T ss_pred eeeecccceeecCCCCeEEEee---cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhhhhhhceeec-CCc
Confidence 356799999999999999999 66899998887765 33210 1235567899998 579
Q ss_pred eEEEEeCCCCeEEEEeCCCCcE--EEEEeC------------------------CccceeEEEee-eCCeEEEecCCCCc
Q psy952 189 RLYWADAHLDYIASVDLDGKHK--HIVISG------------------------QKVPHVFALTL-FEDHIYWTDWNTKS 241 (573)
Q Consensus 189 ~LYw~D~~~~~I~~~~~dG~~~--~~l~~~------------------------~~~~~p~~ia~-~~~~lywtd~~~~~ 241 (573)
.||++++...+|-++..=+++. .+++.. ..+..|.+||| .++.||++|.++.+
T Consensus 605 ~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v~IAD~gN~r 684 (1899)
T KOG4659|consen 605 ALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDVIIADSGNSR 684 (1899)
T ss_pred eEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcEEEecCCchh
Confidence 9999998766555544333222 222211 12678999999 57899999999998
Q ss_pred eEEEe
Q psy952 242 INRAD 246 (573)
Q Consensus 242 I~~~~ 246 (573)
|..+.
T Consensus 685 Ir~Vs 689 (1899)
T KOG4659|consen 685 IRKVS 689 (1899)
T ss_pred hhhhh
Confidence 87654
No 11
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.46 E-value=1.5e-10 Score=119.30 Aligned_cols=238 Identities=15% Similarity=0.145 Sum_probs=160.8
Q ss_pred CCCEEEEEec-----ccEEEEEcCC--Cceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC--CcceE-
Q psy952 15 IKPWLIFSNK-----YYVRNMSLDA--TQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS--TEKER- 81 (573)
Q Consensus 15 ~~~~l~~s~~-----~~I~~i~l~g--~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~- 81 (573)
...+|+.++. ..|..+.++. ..++.+ ......|..|++++.++.||+++...+.|..+.++. .....
T Consensus 47 ~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~ 126 (345)
T PF10282_consen 47 DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV 126 (345)
T ss_dssp TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE
T ss_pred CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee
Confidence 3455665544 2555555443 333322 224566899999999999999999999998888764 22221
Q ss_pred -EEc----------CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc--eeE---e-ccCCCCcceEEEeCCCceE
Q psy952 82 -VIR----------HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN--RKT---L-KTAIQDPRGITLHPGIGYV 144 (573)
Q Consensus 82 -i~~----------~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~--~~~---l-~~~~~~P~~Iavdp~~g~L 144 (573)
++. .....|..+.+++.++.||++|.+.++|.+++++... ... + +.....||.|+++|...++
T Consensus 127 ~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~ 206 (345)
T PF10282_consen 127 QTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYA 206 (345)
T ss_dssp EEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEE
T ss_pred eecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEE
Confidence 221 1236788999999999999999999999999997654 221 1 2455679999999999999
Q ss_pred EEEecCCcCeEEEEeccC-CCcEEEEe----cC---CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC--cEEEEE
Q psy952 145 YFSSWNLQAYIGKIGMDG-SNFTRILT----HE---DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK--HKHIVI 214 (573)
Q Consensus 145 Ywtd~~~~~~I~r~~ldG-~~~~~l~~----~~---~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~l~ 214 (573)
|+++. ....|.++.++. ......+. .. ..-..|.+|+|++++++||++..+.+.|..++++.. ..+.+.
T Consensus 207 Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~ 285 (345)
T PF10282_consen 207 YVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQ 285 (345)
T ss_dssp EEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEE
T ss_pred EEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEE
Confidence 99984 366788887772 22211111 01 112368899999999999999999999999988542 333322
Q ss_pred ---eCCccceeEEEee--eCCeEEEecCCCCceEEE--eccCCcceEE
Q psy952 215 ---SGQKVPHVFALTL--FEDHIYWTDWNTKSINRA--DKFNGRDYRV 255 (573)
Q Consensus 215 ---~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~--~~~~g~~~~~ 255 (573)
.+ -..|.+|++ .+.+||+++..++.|..+ +..+|....+
T Consensus 286 ~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 286 TVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 22 246999988 678999999998887654 5556654443
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=2e-10 Score=117.70 Aligned_cols=228 Identities=12% Similarity=0.110 Sum_probs=152.9
Q ss_pred EEEEEe--cccEEEEEcCC-Cceee--cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEc-CCCCCc
Q psy952 18 WLIFSN--KYYVRNMSLDA-TQYSL--VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIR-HDSHGL 90 (573)
Q Consensus 18 ~l~~s~--~~~I~~i~l~g-~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~-~~~~~p 90 (573)
++++++ ...|+.++++. ...+. .+.....+..|++++..+.||++....+.|..++++... .+.+.. .....|
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 455554 56788888852 22222 223346688999999999999998877888777775322 221211 112479
Q ss_pred ceeEEeecCCcEEEEeCCCCeEEEEEcC--CCceeEe--ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952 91 EGLAVDWVGRKLYWLDRHSKQLDVAELD--GTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166 (573)
Q Consensus 91 ~glavD~~~~~LY~td~~~~~I~~~~ld--g~~~~~l--~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~ 166 (573)
.+|++++.++.||.+....+.|.+++++ |...+.+ +.....|.+++++|..++||+++.+ ..+|...+++.....
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-~~~v~v~d~~~~g~l 161 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-EDRIRLFTLSDDGHL 161 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-CCEEEEEEECCCCcc
Confidence 9999999999999999888999998876 3222222 2355679999999998999999965 567777777532111
Q ss_pred -----EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC--CcEEEEEe-CC------ccceeEEEee--eCC
Q psy952 167 -----RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG--KHKHIVIS-GQ------KVPHVFALTL--FED 230 (573)
Q Consensus 167 -----~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG--~~~~~l~~-~~------~~~~p~~ia~--~~~ 230 (573)
..+. ...-..|.++++++.+++||+++...+.|..++++. ...+.+.. .. ...+|.+|++ .+.
T Consensus 162 ~~~~~~~~~-~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~ 240 (330)
T PRK11028 162 VAQEPAEVT-TVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGR 240 (330)
T ss_pred cccCCCcee-cCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCC
Confidence 0110 123457999999999999999999899998888862 22222221 10 0123445665 456
Q ss_pred eEEEecCCCCceEEEec
Q psy952 231 HIYWTDWNTKSINRADK 247 (573)
Q Consensus 231 ~lywtd~~~~~I~~~~~ 247 (573)
+||+++...+.|..++.
T Consensus 241 ~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 241 HLYACDRTASLISVFSV 257 (330)
T ss_pred EEEEecCCCCeEEEEEE
Confidence 89999888888876654
No 13
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=2.4e-10 Score=117.73 Aligned_cols=241 Identities=14% Similarity=0.125 Sum_probs=164.5
Q ss_pred ccEEEEEcC--CCceeec--ccCCcceEEEEEEcCCCEEEEEEC---CCCeEEEEEcCCC--cceEE--EcCCCCCccee
Q psy952 25 YYVRNMSLD--ATQYSLV--HQDLLNVVAMDFHYKENRFYFADV---AAKTIYRSRVGST--EKERV--IRHDSHGLEGL 93 (573)
Q Consensus 25 ~~I~~i~l~--g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~---~~~~I~~~~~~g~--~~~~i--~~~~~~~p~gl 93 (573)
..|+.+.++ ...++.+ +....+|.-|++++.++.||.++. ..+.|..+.++.. ..+.+ +...-..|-.|
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 477777774 3344332 345677999999999999999998 4677777776542 22222 11123688999
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCC--CceeE--ec-----------cCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDG--TNRKT--LK-----------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI 158 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg--~~~~~--l~-----------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~ 158 (573)
++|+.++.||+++...+.|.+++++. ..... ++ +...+|..+.++|..++||++|.+ ..+|...
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-~D~v~~~ 171 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-ADRVYVY 171 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-TTEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-CCEEEEE
Confidence 99999999999999999999988864 33332 11 134569999999999999999976 5688888
Q ss_pred eccCCC--c---EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEe-C----C--ccceeEE
Q psy952 159 GMDGSN--F---TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVIS-G----Q--KVPHVFA 224 (573)
Q Consensus 159 ~ldG~~--~---~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~-~----~--~~~~p~~ 224 (573)
.++... . ..+. ......|+.|++++.+.++|++....+.|..++++ ....+.+.. . . ....|.+
T Consensus 172 ~~~~~~~~l~~~~~~~--~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 249 (345)
T PF10282_consen 172 DIDDDTGKLTPVDSIK--VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAE 249 (345)
T ss_dssp EE-TTS-TEEEEEEEE--CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEE
T ss_pred EEeCCCceEEEeeccc--cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCcee
Confidence 887654 2 1222 45567899999999999999999999999998887 322222211 1 0 0126888
Q ss_pred Eeee--CCeEEEecCCCCceEEEec--cCCcceE--EEcccCCCceeeee
Q psy952 225 LTLF--EDHIYWTDWNTKSINRADK--FNGRDYR--VLRNTTHRPYDIHV 268 (573)
Q Consensus 225 ia~~--~~~lywtd~~~~~I~~~~~--~~g~~~~--~l~~~~~~p~~i~v 268 (573)
|++. +.+||+++...+.|..++. .+|.... .+...-..|.++.+
T Consensus 250 i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 250 IAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp EEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred EEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 8884 6789999999998776654 3444322 23333446877776
No 14
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.42 E-value=5.3e-10 Score=114.65 Aligned_cols=250 Identities=12% Similarity=0.097 Sum_probs=160.3
Q ss_pred CEEEEEe--cccEEEEEcCC-Cceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC--CCcceEEE-cCCCC
Q psy952 17 PWLIFSN--KYYVRNMSLDA-TQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG--STEKERVI-RHDSH 88 (573)
Q Consensus 17 ~~l~~s~--~~~I~~i~l~g-~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~--g~~~~~i~-~~~~~ 88 (573)
.+|+++. ...|..+++++ ..++.+ ......|..|++++.++.||.+....+.|..++++ |...+.+. ..+..
T Consensus 47 ~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~ 126 (330)
T PRK11028 47 RHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE 126 (330)
T ss_pred CEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC
Confidence 4666654 36676666642 222221 22334689999999999999999888888888775 32222221 12345
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee-----E-eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK-----T-LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~-----~-l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
.|.++++++.++.||+++...++|.+++++... .. . -+.....|++++++|..++||+++.. ...|...+++
T Consensus 127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-~~~v~v~~~~ 205 (330)
T PRK11028 127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-NSSVDVWQLK 205 (330)
T ss_pred cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-CCEEEEEEEe
Confidence 799999999999999999999999999986421 11 0 11234569999999999999999854 4677777765
Q ss_pred C--CCcEEEEe---cCC---CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC--CCcEEEEEeCCccceeEEEee--eC
Q psy952 162 G--SNFTRILT---HED---DIAWPNALTLDYFTERLYWADAHLDYIASVDLD--GKHKHIVISGQKVPHVFALTL--FE 229 (573)
Q Consensus 162 G--~~~~~l~~---~~~---~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d--G~~~~~l~~~~~~~~p~~ia~--~~ 229 (573)
. ...+.+.. ... .-.+|.+|++++.+++||+++...+.|..++++ +...+++..-.....|.++++ .+
T Consensus 206 ~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg 285 (330)
T PRK11028 206 DPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSG 285 (330)
T ss_pred CCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCC
Confidence 2 22222211 011 123556799999999999998888888887764 433333322110235666776 57
Q ss_pred CeEEEecCCCCceEEE--eccCCcceE--EEcccCCCceeeee
Q psy952 230 DHIYWTDWNTKSINRA--DKFNGRDYR--VLRNTTHRPYDIHV 268 (573)
Q Consensus 230 ~~lywtd~~~~~I~~~--~~~~g~~~~--~l~~~~~~p~~i~v 268 (573)
.+||++....+.|..+ +..+|.... .+.. ...|..|+|
T Consensus 286 ~~l~va~~~~~~v~v~~~~~~~g~l~~~~~~~~-g~~P~~~~~ 327 (330)
T PRK11028 286 KYLIAAGQKSHHISVYEIDGETGLLTELGRYAV-GQGPMWVSV 327 (330)
T ss_pred CEEEEEEccCCcEEEEEEcCCCCcEEEcccccc-CCCceEEEE
Confidence 7999999888876655 434444221 1222 346777766
No 15
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.6e-10 Score=113.68 Aligned_cols=215 Identities=13% Similarity=0.113 Sum_probs=146.9
Q ss_pred CCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcC----CCC
Q psy952 16 KPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRH----DSH 88 (573)
Q Consensus 16 ~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~----~~~ 88 (573)
...|++++ ...|+++++.....+..........++.+| ..+.|+.++.. +++++++.... +.+... ...
T Consensus 36 ~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d-~~g~Lv~~~~g---~~~~~~~~~~~~t~~~~~~~~~~~~ 111 (307)
T COG3386 36 RGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALID-AGGRLIACEHG---VRLLDPDTGGKITLLAEPEDGLPLN 111 (307)
T ss_pred CCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeec-CCCeEEEEccc---cEEEeccCCceeEEeccccCCCCcC
Confidence 34577776 578999988744443333333335666777 46777776654 33344343333 333221 257
Q ss_pred CcceeEEeecCCcEEEEeCC-----------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952 89 GLEGLAVDWVGRKLYWLDRH-----------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK 157 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~-----------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r 157 (573)
+|+.+.+|+. +.+|+++.. .+.|+++++.|...+.+...+..|+|||++|.+..||++|.. ..+|+|
T Consensus 112 r~ND~~v~pd-G~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~-~~~i~r 189 (307)
T COG3386 112 RPNDGVVDPD-GRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP-ANRIHR 189 (307)
T ss_pred CCCceeEcCC-CCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC-CCeEEE
Confidence 8999999974 889999876 257899998776666555669999999999999999999964 678999
Q ss_pred Eecc---CCC--cEEEEecCCCCCCCceEEEeccCCeEE-EEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC--
Q psy952 158 IGMD---GSN--FTRILTHEDDIAWPNALTLDYFTERLY-WADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-- 229 (573)
Q Consensus 158 ~~ld---G~~--~~~l~~~~~~l~~P~glaiD~~~~~LY-w~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-- 229 (573)
..++ |.. +...+.....-..|.|+++| .++.|| ++-++...|.+++.+|.....+... ...|..+++-+
T Consensus 190 ~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD-adG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP--~~~~t~~~FgG~~ 266 (307)
T COG3386 190 YDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD-ADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLP--VKRPTNPAFGGPD 266 (307)
T ss_pred EecCcccCccCCcceEEEccCCCCCCCceEEe-CCCCEEEecccCCceEEEECCCCcEEEEEECC--CCCCccceEeCCC
Confidence 9887 321 22222102234679999999 677888 4444455999999998777666543 35788888866
Q ss_pred -CeEEEecCCC
Q psy952 230 -DHIYWTDWNT 239 (573)
Q Consensus 230 -~~lywtd~~~ 239 (573)
+.||+|-...
T Consensus 267 ~~~L~iTs~~~ 277 (307)
T COG3386 267 LNTLYITSARS 277 (307)
T ss_pred cCEEEEEecCC
Confidence 7899996554
No 16
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=2.7e-10 Score=118.57 Aligned_cols=237 Identities=13% Similarity=0.121 Sum_probs=170.3
Q ss_pred EEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe
Q psy952 27 VRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD 106 (573)
Q Consensus 27 I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td 106 (573)
+..++..+..+...+.....|.++++.+....+||++.....|..++......+.....+...|.++++...+.++|+++
T Consensus 13 ~~v~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~ 92 (381)
T COG3391 13 VSVINTGTNKVTAAISLGRGPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTT 92 (381)
T ss_pred eEEEeecccEEEEEeecCCCCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEec
Confidence 55555555555444444558999999999999999998777676666552222333334447899999999999999999
Q ss_pred CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952 107 RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 185 (573)
Q Consensus 107 ~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~ 185 (573)
...+.|.++++........+.....|.+|+++|..+.||+++.+ ....|.+++.........+ .....|.++++++
T Consensus 93 ~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~---~vG~~P~~~a~~p 169 (381)
T COG3391 93 GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATI---PVGNTPTGVAVDP 169 (381)
T ss_pred CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEE---ecCCCcceEEECC
Confidence 98899999996654443333333389999999999999999975 3677888776644332222 2233689999999
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEEe----CCccceeEEEee--eCCeEEEecCCC--CceEEEeccCCcceEE--
Q psy952 186 FTERLYWADAHLDYIASVDLDGKHKHIVIS----GQKVPHVFALTL--FEDHIYWTDWNT--KSINRADKFNGRDYRV-- 255 (573)
Q Consensus 186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~----~~~~~~p~~ia~--~~~~lywtd~~~--~~I~~~~~~~g~~~~~-- 255 (573)
.+.++|+++...++|..++..+..... .. -.....|.++++ .+.++|+++..+ +.|.+++..++.....
T Consensus 170 ~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~ 248 (381)
T COG3391 170 DGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL 248 (381)
T ss_pred CCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc
Confidence 999999999999999999987766553 11 011467888888 567899999988 6899998777665544
Q ss_pred EcccCCCceeeee
Q psy952 256 LRNTTHRPYDIHV 268 (573)
Q Consensus 256 l~~~~~~p~~i~v 268 (573)
..... .|+++.+
T Consensus 249 ~~~~~-~~~~v~~ 260 (381)
T COG3391 249 PVGSG-APRGVAV 260 (381)
T ss_pred ccccC-CCCceeE
Confidence 22333 5665544
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.36 E-value=5.3e-10 Score=116.40 Aligned_cols=209 Identities=14% Similarity=0.140 Sum_probs=159.7
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC--CCCeEEEEEcCCCce
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR--HSKQLDVAELDGTNR 122 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~--~~~~I~~~~ldg~~~ 122 (573)
..|.++++.....++|+.+...+.|..++++.......+..+ ..|.+|++++.++.||+++. ..+.|.+++......
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~ 152 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV 152 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence 568899999999999999999999999996654433333334 39999999999999999998 468999999876554
Q ss_pred eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe---cCCCCCCCceEEEeccCCeEEEEeCCC--
Q psy952 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT---HEDDIAWPNALTLDYFTERLYWADAHL-- 197 (573)
Q Consensus 123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~~~LYw~D~~~-- 197 (573)
...+.....|.+++++|....+|+++. ....|..++..+..... -. .......|.++++++.+.++|+++...
T Consensus 153 ~~~~~vG~~P~~~a~~p~g~~vyv~~~-~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 153 TATIPVGNTPTGVAVDPDGNKVYVTNS-DDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEecCCCcceEEECCCCCeEEEEec-CCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 444444447999999999888999994 46788888877665442 10 024567899999999999999999987
Q ss_pred CeEEEEeCCCCcEEEE-EeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952 198 DYIASVDLDGKHKHIV-ISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLR 257 (573)
Q Consensus 198 ~~I~~~~~dG~~~~~l-~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~ 257 (573)
+.|..++......... .....+ .|.++++ .+..+|+++...+.|..++..+......+.
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 6888888876655443 222225 7888887 567899998888999999876666555443
No 18
>KOG4659|consensus
Probab=99.31 E-value=1.8e-10 Score=126.37 Aligned_cols=209 Identities=20% Similarity=0.283 Sum_probs=149.7
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEE-cCC
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAE-LDG 119 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~-ldg 119 (573)
+-.|++||+-+ ++.||+.|.+ -|.|+..+|....+ +.-+ ...-.-||+|++.+.||++|....+|+++. |.+
T Consensus 364 L~aPvala~a~-DGSl~VGDfN--yIRRI~~dg~v~tI-l~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~ 439 (1899)
T KOG4659|consen 364 LFAPVALAYAP-DGSLIVGDFN--YIRRISQDGQVSTI-LTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEP 439 (1899)
T ss_pred eeceeeEEEcC-CCcEEEccch--heeeecCCCceEEE-EEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCc
Confidence 44589999985 8999999865 69999999876553 3323 344567999999999999999999888764 443
Q ss_pred Cce----eEec---------------------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---
Q psy952 120 TNR----KTLK---------------------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH--- 171 (573)
Q Consensus 120 ~~~----~~l~---------------------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~--- 171 (573)
+.. ++++ ..|..|+|||||. .|.||++| ...|.+++.+|-...++-+.
T Consensus 440 ~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYfaD---~t~IR~iD~~giIstlig~~~~~ 515 (1899)
T KOG4659|consen 440 QDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYFAD---GTRIRVIDTTGIISTLIGTTPDQ 515 (1899)
T ss_pred cccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEEec---ccEEEEeccCceEEEeccCCCCc
Confidence 221 2222 1345699999998 89999999 34788887777655444310
Q ss_pred -------------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-------------------Ccc
Q psy952 172 -------------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-------------------QKV 219 (573)
Q Consensus 172 -------------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-------------------~~~ 219 (573)
.-.|.||..|||+|.++.||+.| ++.|.++..++.-+ +++.. ..+
T Consensus 516 ~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~-Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 516 HPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVR-IILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred cCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEE-EEcCCccccccCCCchhhhhhhhhhhh
Confidence 12378999999999999999998 57899998887555 22210 003
Q ss_pred ceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCc
Q psy952 220 PHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRP 263 (573)
Q Consensus 220 ~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p 263 (573)
..|.+|++ ..+.||+++....+|.|+.+.+....-.+..+...|
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~ 637 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSP 637 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCC
Confidence 34678888 678999999999999888876655544444444333
No 19
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.28 E-value=1e-08 Score=102.71 Aligned_cols=246 Identities=13% Similarity=0.060 Sum_probs=160.8
Q ss_pred EEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952 18 WLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV 95 (573)
Q Consensus 18 ~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav 95 (573)
.|+++. .+.|+.+++.+......+.....+..+++++.++.||.+....+.|+.+++........+..+ ..|.++++
T Consensus 44 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~ 122 (300)
T TIGR03866 44 LLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-VEPEGMAV 122 (300)
T ss_pred EEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-CCcceEEE
Confidence 444443 467888888765443323333446788999988889998877789999998754322222222 36889999
Q ss_pred eecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEec---
Q psy952 96 DWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILTH--- 171 (573)
Q Consensus 96 D~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~~--- 171 (573)
++.+..|+++......+...++..............|..++++|...+||++.. ....|...++..... ..+...
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~~~~~~ 201 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKITFEIPG 201 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeeeecccc
Confidence 987777766665444566667664433222222346899999998777877642 245677777764332 222100
Q ss_pred -CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEecc
Q psy952 172 -EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKF 248 (573)
Q Consensus 172 -~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~ 248 (573)
......|.++++++.+..+|++....++|..++............ -..+.+|++ .+.+||.+....+.|...+..
T Consensus 202 ~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 202 VHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred cccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 012235778999988899999887778898888865443322221 124667776 556788887778899999988
Q ss_pred CCcceEEEcccCCCceeeee
Q psy952 249 NGRDYRVLRNTTHRPYDIHV 268 (573)
Q Consensus 249 ~g~~~~~l~~~~~~p~~i~v 268 (573)
+++.+..+..+ ..|++|++
T Consensus 280 ~~~~~~~~~~~-~~~~~~~~ 298 (300)
T TIGR03866 280 ALKVIKSIKVG-RLPWGVVV 298 (300)
T ss_pred CCcEEEEEEcc-cccceeEe
Confidence 88877777553 68888875
No 20
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.28 E-value=5.1e-10 Score=116.11 Aligned_cols=201 Identities=17% Similarity=0.230 Sum_probs=136.0
Q ss_pred eeeccc--CCcceEEEEEEcCCCEEEEEECC-----------C-CeEEEEEc-C--CC-cceEEEcCCCCCcceeEEeec
Q psy952 37 YSLVHQ--DLLNVVAMDFHYKENRFYFADVA-----------A-KTIYRSRV-G--ST-EKERVIRHDSHGLEGLAVDWV 98 (573)
Q Consensus 37 ~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~-----------~-~~I~~~~~-~--g~-~~~~i~~~~~~~p~glavD~~ 98 (573)
+++++. .+.+|++|++|. .++||+++.. . .+|+++.- + |. ...+++..++..|.||++..
T Consensus 4 ~~l~A~~p~~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~- 81 (367)
T TIGR02604 4 VTLFAAEPLLRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV- 81 (367)
T ss_pred EEEEECCCccCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-
Confidence 344443 378899999995 6889999852 2 38888764 3 32 23356667889999999975
Q ss_pred CCcEEEEeCCCCeEEEE-EcCCC-----ceeEeccCC--------CCcceEEEeCCCceEEEEecCC-------------
Q psy952 99 GRKLYWLDRHSKQLDVA-ELDGT-----NRKTLKTAI--------QDPRGITLHPGIGYVYFSSWNL------------- 151 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~-~ldg~-----~~~~l~~~~--------~~P~~Iavdp~~g~LYwtd~~~------------- 151 (573)
++ ||+++. ..|.++ +.++. .+++|++.+ ..|++|+++| .|+||++....
T Consensus 82 ~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 82 GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccC
Confidence 44 999974 457776 44442 344555422 2388999999 68999987521
Q ss_pred -----cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC------------CC------
Q psy952 152 -----QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD------------GK------ 208 (573)
Q Consensus 152 -----~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d------------G~------ 208 (573)
.+.|+|++.+|+..+++. ..+..|.||++|+ .+.||++|.......+++.- +.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a---~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~~~~~~~ 233 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVA---HGFQNPYGHSVDS-WGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGRRYDHAD 233 (367)
T ss_pred cccccCceEEEEecCCCeEEEEe---cCcCCCccceECC-CCCEEEEccCCCceeEEcccccccccCCCCCCCccccccc
Confidence 146999999998877665 6799999999996 78999998865544443311 10
Q ss_pred ---cEEE---------------EEeCCccceeEEEeeeC---------CeEEEecCCCCceEEEec
Q psy952 209 ---HKHI---------------VISGQKVPHVFALTLFE---------DHIYWTDWNTKSINRADK 247 (573)
Q Consensus 209 ---~~~~---------------l~~~~~~~~p~~ia~~~---------~~lywtd~~~~~I~~~~~ 247 (573)
..+. +..-.....|.|++++. +.+|+++|..+.|.++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l 299 (367)
T TIGR02604 234 RGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSL 299 (367)
T ss_pred ccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEe
Confidence 0000 00000023688988862 578999999999988864
No 21
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.25 E-value=1.6e-09 Score=112.44 Aligned_cols=210 Identities=19% Similarity=0.240 Sum_probs=137.4
Q ss_pred cEEEEEc---CCC--ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEE-cCCC-----cceEEEcC---C----C
Q psy952 26 YVRNMSL---DAT--QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR-VGST-----EKERVIRH---D----S 87 (573)
Q Consensus 26 ~I~~i~l---~g~--~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~-~~g~-----~~~~i~~~---~----~ 87 (573)
+|+++.- +|. ..++++..+..|.||++.. ++ ||+++. ..|+++. .++. .+++++.. . .
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV~~~--~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~ 123 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYVATP--PDILFLRDKDGDDKADGEREVLLSGFGGQINNHH 123 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEEeCC--CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccc
Confidence 6777664 233 2356677888899999985 45 999864 4688774 4442 33444321 1 2
Q ss_pred CCcceeEEeecCCcEEEEeCC-------------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe
Q psy952 88 HGLEGLAVDWVGRKLYWLDRH-------------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~-------------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd 148 (573)
+.+.+|++++ .++||++... .+.|++++++|...+++..++.+|.||++++ .|.||++|
T Consensus 124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~-~G~l~~td 201 (367)
T TIGR02604 124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDS-WGDVFFCD 201 (367)
T ss_pred ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECC-CCCEEEEc
Confidence 4488999997 5799998762 1579999999998888888999999999999 78999998
Q ss_pred cCCcCeEEEEec------------cCCC---------cEE-----------EEe---cCCCCCCCceEEEe-------cc
Q psy952 149 WNLQAYIGKIGM------------DGSN---------FTR-----------ILT---HEDDIAWPNALTLD-------YF 186 (573)
Q Consensus 149 ~~~~~~I~r~~l------------dG~~---------~~~-----------l~~---~~~~l~~P~glaiD-------~~ 186 (573)
.... ...++.. .+.. .+. ++. .......|.|+++- .-
T Consensus 202 n~~~-~~~~i~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~ 280 (367)
T TIGR02604 202 NDDP-PLCRVTPVAEGGRNGYQSFNGRRYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEY 280 (367)
T ss_pred cCCC-ceeEEcccccccccCCCCCCCcccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHH
Confidence 6422 2222211 0000 000 000 01112368899987 34
Q ss_pred CCeEEEEeCCCCeEEEEeCC--CCcE----EEEEeC-CccceeEEEeee-CCeEEEecCCCCce
Q psy952 187 TERLYWADAHLDYIASVDLD--GKHK----HIVISG-QKVPHVFALTLF-EDHIYWTDWNTKSI 242 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~~~~d--G~~~----~~l~~~-~~~~~p~~ia~~-~~~lywtd~~~~~I 242 (573)
.+.||++++..++|.++.++ |... ..++.. ....+|..|++. ++.||++||...-|
T Consensus 281 ~g~~fv~~~~~~~v~~~~l~~~g~~~~~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i 344 (367)
T TIGR02604 281 RGLLLVGDAHGQLIVRYSLEPKGAGFKGERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGI 344 (367)
T ss_pred CCCEEeeeccCCEEEEEEeecCCCccEeecCceEecCCCcccccceeECCCCCEEEEEeccCcc
Confidence 58899999999999999876 4322 122322 213689999984 67899999876444
No 22
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.24 E-value=9.1e-09 Score=99.28 Aligned_cols=200 Identities=11% Similarity=0.124 Sum_probs=126.5
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC--Cc
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TN 121 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~ 121 (573)
..++.||+|++.+++||.+.-..+.|+.++++|...+.+-..+...++||++- -++.+.+++...++|.++.++. ..
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccc
Confidence 34599999999999999999889999999999887777766778899999994 2344444666678898888732 21
Q ss_pred e--e---Eec---c--CCCCcceEEEeCCCceEEEEecCCcCeEEEEec--cCCCcEEEEe-----cCCCCCCCceEEEe
Q psy952 122 R--K---TLK---T--AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM--DGSNFTRILT-----HEDDIAWPNALTLD 184 (573)
Q Consensus 122 ~--~---~l~---~--~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l--dG~~~~~l~~-----~~~~l~~P~glaiD 184 (573)
. . .+- . +-....|||.|+.++.||++.-.....|+.... .+....+... ....+..|.+|++|
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred cchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 1 1 111 1 112378999999999999997544446777776 3333222221 12245678999999
Q ss_pred ccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe-C------CccceeEEEeee-CCeEEEecCCCCceEEE
Q psy952 185 YFTERLYWADAHLDYIASVDLDGKHKHIVIS-G------QKVPHVFALTLF-EDHIYWTDWNTKSINRA 245 (573)
Q Consensus 185 ~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~-~------~~~~~p~~ia~~-~~~lywtd~~~~~I~~~ 245 (573)
+..+.||+......+|..++.+|..+..+.- . ..+++|-|||++ ++.||++.- -+..+++
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEET-TTEEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcC-CceEEEe
Confidence 9999999999999999999999986655432 2 126789999996 578998864 3445443
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.20 E-value=4e-08 Score=98.51 Aligned_cols=229 Identities=10% Similarity=0.031 Sum_probs=149.4
Q ss_pred ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 23 NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 23 ~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..+.|+++++........+.....+.++++++.++.||.+....+.|+.+++.+......+..+ ..+..+++++.++.|
T Consensus 9 ~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~l 87 (300)
T TIGR03866 9 KDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSG-PDPELFALHPNGKIL 87 (300)
T ss_pred CCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCC-CCccEEEECCCCCEE
Confidence 3578888998755443333444557889999888889999888889999998765433323222 457889999888889
Q ss_pred EEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEE
Q psy952 103 YWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182 (573)
Q Consensus 103 Y~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~gla 182 (573)
|.+....+.|.+.++........+.....|.+++++|...+|+++.. ....+...++......... ..-..|..++
T Consensus 88 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~---~~~~~~~~~~ 163 (300)
T TIGR03866 88 YIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNV---LVDQRPRFAE 163 (300)
T ss_pred EEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEE---EcCCCccEEE
Confidence 99887778999999876432222233345899999996666666553 2334445555433222111 1224678899
Q ss_pred EeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeC--C---ccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceE
Q psy952 183 LDYFTERLYWADAHLDYIASVDLDGKHK-HIVISG--Q---KVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYR 254 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~--~---~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~ 254 (573)
+++.+.+||++....+.|..+++..... +.+... . ....|.++++ .+..+|++....++|...+..+++...
T Consensus 164 ~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 164 FTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred ECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 9988888888766678888888875432 222111 0 0124667776 355678887777788888876666544
Q ss_pred EE
Q psy952 255 VL 256 (573)
Q Consensus 255 ~l 256 (573)
.+
T Consensus 244 ~~ 245 (300)
T TIGR03866 244 YL 245 (300)
T ss_pred EE
Confidence 43
No 24
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.09 E-value=6e-11 Score=78.03 Aligned_cols=36 Identities=50% Similarity=1.214 Sum_probs=33.3
Q ss_pred CcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562 (573)
Q Consensus 524 ~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c 562 (573)
.|.+++|+|.++ .||+..|+|||..||.|||||. +|
T Consensus 2 ~C~~~~f~C~~~-~CI~~~~~CDg~~DC~dgsDE~--~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNG-QCIPKSWVCDGIPDCPDGSDEQ--NC 37 (37)
T ss_dssp SSSTTEEEETTS-SEEEGGGTTSSSCSSSSSTTTS--SH
T ss_pred cCcCCeeEcCCC-CEEChHHcCCCCCCCCCCcccc--cC
Confidence 477899999999 7999999999999999999997 65
No 25
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=3.8e-07 Score=89.23 Aligned_cols=210 Identities=17% Similarity=0.189 Sum_probs=143.6
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEc--CCCcceE---EEcCC--------CCCcceeEEeecCCcEEEEeCCCC
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRV--GSTEKER---VIRHD--------SHGLEGLAVDWVGRKLYWLDRHSK 110 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~--~g~~~~~---i~~~~--------~~~p~glavD~~~~~LY~td~~~~ 110 (573)
...|.-|++|..+..||.++...+.|.++.+ +|.-... +...+ -..+...-+++.++.|++.|-+..
T Consensus 88 g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D 167 (346)
T COG2706 88 GSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD 167 (346)
T ss_pred CCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc
Confidence 3446889999999999999999998888776 4432222 22222 122667788999999999999999
Q ss_pred eEEEEEcCCCceeE----eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC--CcEEEE---ecCCCC---CCC
Q psy952 111 QLDVAELDGTNRKT----LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS--NFTRIL---THEDDI---AWP 178 (573)
Q Consensus 111 ~I~~~~ldg~~~~~----l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~--~~~~l~---~~~~~l---~~P 178 (573)
+|.+++++-..... .+.....||.|+++|...+.|...- -++.|.+...++. ..+.|. ...+++ .|-
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~ 246 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA 246 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence 99999987332222 2245567999999999999998873 4678888887764 222221 112233 344
Q ss_pred ceEEEeccCCeEEEEeCCCCeEEEEeC--CCCcEEEEEe---CCccceeEEEeeeCCeEEEecCCCCc--eEEEeccCCc
Q psy952 179 NALTLDYFTERLYWADAHLDYIASVDL--DGKHKHIVIS---GQKVPHVFALTLFEDHIYWTDWNTKS--INRADKFNGR 251 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~~~I~~~~~--dG~~~~~l~~---~~~~~~p~~ia~~~~~lywtd~~~~~--I~~~~~~~g~ 251 (573)
.+|.|.+++..||.++.+.+.|..+.. +|+..+.+.. ....++-|.|+-.++.|+.+...++. |+++++.+|.
T Consensus 247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~ 326 (346)
T COG2706 247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGR 326 (346)
T ss_pred eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCce
Confidence 579999999999999999987766554 5555444432 11134445555567889999777665 5677888876
Q ss_pred ceE
Q psy952 252 DYR 254 (573)
Q Consensus 252 ~~~ 254 (573)
...
T Consensus 327 L~~ 329 (346)
T COG2706 327 LTL 329 (346)
T ss_pred EEe
Confidence 443
No 26
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.08 E-value=2.3e-08 Score=102.04 Aligned_cols=217 Identities=22% Similarity=0.248 Sum_probs=137.8
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE------cCCCCCcceeEEee---cCCcEEEEeCCC-----
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI------RHDSHGLEGLAVDW---VGRKLYWLDRHS----- 109 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~------~~~~~~p~glavD~---~~~~LY~td~~~----- 109 (573)
+.+|.+|+|.+. ++||+++. .++|+++..+|.....+. ..+...+.|||+++ .++.||++-...
T Consensus 1 L~~P~~~a~~pd-G~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 1 LNNPRSMAFLPD-GRLLVAER-SGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp ESSEEEEEEETT-SCEEEEET-TTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCCceEEEEeCC-CcEEEEeC-CceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467999999985 89999998 889999997776523322 12346788999998 357888876532
Q ss_pred ---CeEEEEEcCCC-----ceeEecc-------CCCCcceEEEeCCCceEEEEecC------------CcCeEEEEeccC
Q psy952 110 ---KQLDVAELDGT-----NRKTLKT-------AIQDPRGITLHPGIGYVYFSSWN------------LQAYIGKIGMDG 162 (573)
Q Consensus 110 ---~~I~~~~ldg~-----~~~~l~~-------~~~~P~~Iavdp~~g~LYwtd~~------------~~~~I~r~~ldG 162 (573)
.+|.++.++.. ..++|+. ....-.+|+++| .|+|||+-.. ..++|.|++.||
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG 157 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG 157 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccC
Confidence 47888777644 2333432 123367899999 6799999531 135899999999
Q ss_pred C-------------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEeCCCCc--------------E--
Q psy952 163 S-------------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD---YIASVDLDGKH--------------K-- 210 (573)
Q Consensus 163 ~-------------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~~--------------~-- 210 (573)
+ ..+++. .++..|.+|++|+..++||.+|.+.. .|.++.. |.+ .
T Consensus 158 ~~p~dnP~~~~~~~~~~i~A---~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~ 233 (331)
T PF07995_consen 158 SIPADNPFVGDDGADSEIYA---YGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPI 233 (331)
T ss_dssp SB-TTSTTTTSTTSTTTEEE---E--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-E
T ss_pred cCCCCCccccCCCceEEEEE---eCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCcc
Confidence 7 344443 78999999999988899999997764 3444432 111 0
Q ss_pred ----------EEEEe-CCccceeEEEeee--------CCeEEEecCCCCceEEEeccCCcce---EEEcccCC-Cceeee
Q psy952 211 ----------HIVIS-GQKVPHVFALTLF--------EDHIYWTDWNTKSINRADKFNGRDY---RVLRNTTH-RPYDIH 267 (573)
Q Consensus 211 ----------~~l~~-~~~~~~p~~ia~~--------~~~lywtd~~~~~I~~~~~~~g~~~---~~l~~~~~-~p~~i~ 267 (573)
.-++. .. ...|.|++++ .+.+|++++..++|.++...++..+ +.+..... .|.+|+
T Consensus 234 ~~~~~~~~~~~P~~~~~~-~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~ 312 (331)
T PF07995_consen 234 GDAPSCPGFVPPVFAYPP-HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVA 312 (331)
T ss_dssp CTGSS-TTS---SEEETT-T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEE
T ss_pred ccccCCCCcCccceeecC-ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEE
Confidence 00011 11 2468899986 5679999999999999986544332 22232232 555655
Q ss_pred e
Q psy952 268 V 268 (573)
Q Consensus 268 v 268 (573)
+
T Consensus 313 ~ 313 (331)
T PF07995_consen 313 Q 313 (331)
T ss_dssp E
T ss_pred E
Confidence 4
No 27
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.08 E-value=2.3e-07 Score=94.00 Aligned_cols=230 Identities=12% Similarity=0.073 Sum_probs=149.2
Q ss_pred CEEEEEec------ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC---------CCCeEEEEEcCCCcceE
Q psy952 17 PWLIFSNK------YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV---------AAKTIYRSRVGSTEKER 81 (573)
Q Consensus 17 ~~l~~s~~------~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~---------~~~~I~~~~~~g~~~~~ 81 (573)
..+++.+. +.|.+|+.+..++.-.++....|.++ +.+.++.||++.. ....|..+++.......
T Consensus 13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 34555553 57999999887665445555678887 9999999999999 78899999987644322
Q ss_pred EEcCC-------CCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCCc------------------------------ee
Q psy952 82 VIRHD-------SHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGTN------------------------------RK 123 (573)
Q Consensus 82 i~~~~-------~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~~------------------------------~~ 123 (573)
-+..+ ...|..+++.+.++.||+++.. .+.|.++|+.... ..
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred EEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEE
Confidence 22222 2345599999999999999855 6666666654321 11
Q ss_pred E---------ecc-C---------CCCcceEEEeC-CCceEEEEecCCcCeEEEEeccCCCcEEEEe--c-CCC----CC
Q psy952 124 T---------LKT-A---------IQDPRGITLHP-GIGYVYFSSWNLQAYIGKIGMDGSNFTRILT--H-EDD----IA 176 (573)
Q Consensus 124 ~---------l~~-~---------~~~P~~Iavdp-~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~--~-~~~----l~ 176 (573)
+ ..+ . +.+| ++.+ ..++||++. .+.|..+++.+........ . ... --
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~w 245 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGW 245 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEec---CCeEEEEecCCCcceecceeeecccccccccc
Confidence 0 000 0 0223 2233 344444444 3789999877654333210 0 111 12
Q ss_pred CCce---EEEeccCCeEEEEe-CCC--------CeEEEEeCCCCcEEEE-EeCCccceeEEEee--eCC-eEEEecCCCC
Q psy952 177 WPNA---LTLDYFTERLYWAD-AHL--------DYIASVDLDGKHKHIV-ISGQKVPHVFALTL--FED-HIYWTDWNTK 240 (573)
Q Consensus 177 ~P~g---laiD~~~~~LYw~D-~~~--------~~I~~~~~dG~~~~~l-~~~~~~~~p~~ia~--~~~-~lywtd~~~~ 240 (573)
.|.| +++++.+++||++. ... +.|..+|.....+..- ..+ ..|.+|++ ++. .||.+++.++
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG---~~~~~iavS~Dgkp~lyvtn~~s~ 322 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG---HEIDSINVSQDAKPLLYALSTGDK 322 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC---CceeeEEECCCCCeEEEEeCCCCC
Confidence 4666 99999999999953 222 5899998865544332 233 36777777 566 8999999999
Q ss_pred ceEEEeccCCcceEEE
Q psy952 241 SINRADKFNGRDYRVL 256 (573)
Q Consensus 241 ~I~~~~~~~g~~~~~l 256 (573)
.|..++..+++.+..+
T Consensus 323 ~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 323 TLYIFDAETGKELSSV 338 (352)
T ss_pred cEEEEECcCCeEEeee
Confidence 9999998888877776
No 28
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.07 E-value=7e-11 Score=76.95 Aligned_cols=35 Identities=54% Similarity=1.458 Sum_probs=32.3
Q ss_pred cCCCceeeCCCCceecCCcCcCCCCCCCCCCCCCCCCC
Q psy952 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHC 562 (573)
Q Consensus 525 C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~~~~c 562 (573)
|.+++|+|.++ .|||..|+|||..||+|||||. +|
T Consensus 1 C~~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~--~C 35 (35)
T cd00112 1 CPPNEFRCANG-RCIPSSWVCDGEDDCGDGSDEE--NC 35 (35)
T ss_pred CCCCeEEcCCC-CeeCHHHcCCCccCCCCCcccc--cC
Confidence 56789999997 9999999999999999999998 65
No 29
>KOG1520|consensus
Probab=99.06 E-value=9.6e-09 Score=101.97 Aligned_cols=144 Identities=19% Similarity=0.210 Sum_probs=113.2
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC----CCCCcceeEEeecCCcEEEEeCCC-----------
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH----DSHGLEGLAVDWVGRKLYWLDRHS----------- 109 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~----~~~~p~glavD~~~~~LY~td~~~----------- 109 (573)
++|.||+|+.+++.||++|..-+ ++.++..|...+.+... .+.-.++|.||. ++.|||||+..
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccccchhheEEee
Confidence 67999999999999999998775 78888888765544332 245678999998 99999999653
Q ss_pred ------CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc---EEEEecCCCCCCCce
Q psy952 110 ------KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF---TRILTHEDDIAWPNA 180 (573)
Q Consensus 110 ------~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~---~~l~~~~~~l~~P~g 180 (573)
|++.++|...+..++|+.+|.-|+|||+.|...++.+++.. ..+|.|..+.|... ++++ ..--..|.-
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-~~ri~rywi~g~k~gt~EvFa--~~LPG~PDN 269 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-TARIKRYWIKGPKAGTSEVFA--EGLPGYPDN 269 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-cceeeeeEecCCccCchhhHh--hcCCCCCcc
Confidence 56666666667777888999999999999999999999954 67899999998876 6666 334457889
Q ss_pred EEEeccCCeEEEEe
Q psy952 181 LTLDYFTERLYWAD 194 (573)
Q Consensus 181 laiD~~~~~LYw~D 194 (573)
|..+ .++..|++-
T Consensus 270 IR~~-~~G~fWVal 282 (376)
T KOG1520|consen 270 IRRD-STGHFWVAL 282 (376)
T ss_pred eeEC-CCCCEEEEE
Confidence 9988 556655553
No 30
>KOG1520|consensus
Probab=99.06 E-value=3.5e-09 Score=105.03 Aligned_cols=176 Identities=15% Similarity=0.115 Sum_probs=129.3
Q ss_pred CCEEEEEECCCCeEEEEEcCC-C---cce---EEEcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc
Q psy952 56 ENRFYFADVAAKTIYRSRVGS-T---EKE---RVIRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT 127 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g-~---~~~---~i~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~ 127 (573)
++.|+|+-...+-|.++...- . ... .+-.. -=++|-||+++..++.||++|...| +.++++.|...+.+..
T Consensus 75 g~il~~~g~~~Gwv~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~ 153 (376)
T KOG1520|consen 75 GRILKYTGNDDGWVKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLAD 153 (376)
T ss_pred CceEEEeccCceEEEEEeccccccccccCCCcceecccccCCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccc
Confidence 556788887777777766521 1 111 11111 1279999999999999999998765 7778888877555553
Q ss_pred -----CCCCcceEEEeCCCceEEEEecCC----------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEecc
Q psy952 128 -----AIQDPRGITLHPGIGYVYFSSWNL----------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186 (573)
Q Consensus 128 -----~~~~P~~Iavdp~~g~LYwtd~~~----------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~ 186 (573)
.+.-..++.|++ +|.|||||.+. .+++.+.+..-...++|. ++|..||||++.++
T Consensus 154 ~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl~~YD~~tK~~~VLl---d~L~F~NGlaLS~d 229 (376)
T KOG1520|consen 154 EAEGKPFKFLNDLDIDP-EGVVYFTDSSSKYDRRDFVFAALEGDPTGRLFRYDPSTKVTKVLL---DGLYFPNGLALSPD 229 (376)
T ss_pred cccCeeeeecCceeEcC-CCeEEEeccccccchhheEEeeecCCCccceEEecCcccchhhhh---hcccccccccCCCC
Confidence 234478999999 99999999753 124455554444444554 78999999999999
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcE---EEEEeCCccceeEEEeeeCCeEEEecC
Q psy952 187 TERLYWADAHLDYIASVDLDGKHK---HIVISGQKVPHVFALTLFEDHIYWTDW 237 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~~~~dG~~~---~~l~~~~~~~~p~~ia~~~~~lywtd~ 237 (573)
...|.+++....+|.++-+.|... ++++.+. ...|..|...+..=||.-.
T Consensus 230 ~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~~L-PG~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 230 GSFVLVAETTTARIKRYWIKGPKAGTSEVFAEGL-PGYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred CCEEEEEeeccceeeeeEecCCccCchhhHhhcC-CCCCcceeECCCCCEEEEE
Confidence 999999999999999999998776 7777654 5689999987766666543
No 31
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.03 E-value=4.9e-08 Score=99.69 Aligned_cols=222 Identities=17% Similarity=0.215 Sum_probs=139.6
Q ss_pred CEEEEEec-ccEEEEEcCCCceee-------cccCCcceEEEEEEc---CCCEEEEEECCC--------CeEEEEEcCCC
Q psy952 17 PWLIFSNK-YYVRNMSLDATQYSL-------VHQDLLNVVAMDFHY---KENRFYFADVAA--------KTIYRSRVGST 77 (573)
Q Consensus 17 ~~l~~s~~-~~I~~i~l~g~~~~~-------~~~~~~~~~~v~~d~---~~~~ly~~d~~~--------~~I~~~~~~g~ 77 (573)
.-|+++.+ ..|+++..++..... .......+.+|++++ .++.||++-... .+|.|+.++..
T Consensus 13 G~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~v~r~~~~~~ 92 (331)
T PF07995_consen 13 GRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNRVVRFTLSDG 92 (331)
T ss_dssp SCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEEEEEEEEETT
T ss_pred CcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcceeeEEEeccCC
Confidence 45566654 788888866654111 123445689999998 368888876632 47888887643
Q ss_pred -----cceEEEc------CCCCCcceeEEeecCCcEEEEeC-------------CCCeEEEEEcCCC-------------
Q psy952 78 -----EKERVIR------HDSHGLEGLAVDWVGRKLYWLDR-------------HSKQLDVAELDGT------------- 120 (573)
Q Consensus 78 -----~~~~i~~------~~~~~p~glavD~~~~~LY~td~-------------~~~~I~~~~ldg~------------- 120 (573)
..++|+. ...+.-.+|+|++ .++|||+-. ..++|.+++++|+
T Consensus 93 ~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~ 171 (331)
T PF07995_consen 93 DGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGA 171 (331)
T ss_dssp SCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTS
T ss_pred ccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCc
Confidence 2233321 1345667899997 459999842 2478999999987
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCc--CeEEEEeccCCC---------------------------cEEEEec
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQ--AYIGKIGMDGSN---------------------------FTRILTH 171 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I~r~~ldG~~---------------------------~~~l~~~ 171 (573)
..+++..++.+|.+|++||.+|.||.+|.+.. -.|.++.. |.+ ...+.
T Consensus 172 ~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~-G~nYGWP~~~~~~~~~~~~~~~~~~~~~~~~P~~~-- 248 (331)
T PF07995_consen 172 DSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEP-GGNYGWPYCEGGPKYSGPPIGDAPSCPGFVPPVFA-- 248 (331)
T ss_dssp TTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-T-T-B--TTTBSSSCSTTSS-ECTGSS-TTS---SEE--
T ss_pred eEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEecc-CCcCCCCCCcCCCCCCCCccccccCCCCcCcccee--
Confidence 34556679999999999998899999997642 24444432 111 00011
Q ss_pred CCCCCCCceEEEec------cCCeEEEEeCCCCeEEEEeCCCCcE----EEEEeCCccc-eeEEEee-eCCeEEEecCCC
Q psy952 172 EDDIAWPNALTLDY------FTERLYWADAHLDYIASVDLDGKHK----HIVISGQKVP-HVFALTL-FEDHIYWTDWNT 239 (573)
Q Consensus 172 ~~~l~~P~glaiD~------~~~~LYw~D~~~~~I~~~~~dG~~~----~~l~~~~~~~-~p~~ia~-~~~~lywtd~~~ 239 (573)
...-..|.|+++-. -.+.+++++...++|.++.++.... +.++ .. .. .|.+|++ .++.||+++-.+
T Consensus 249 ~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~~~r~~~v~~~pDG~Lyv~~d~~ 326 (331)
T PF07995_consen 249 YPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFL-GG-FGGRPRDVAQGPDGALYVSDDSD 326 (331)
T ss_dssp ETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEEC-TT-SSS-EEEEEEETTSEEEEEE-TT
T ss_pred ecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcc-cc-CCCCceEEEEcCCCeEEEEECCC
Confidence 12224577888752 2578999999999999999873322 2222 22 33 7999999 467999998899
Q ss_pred CceEE
Q psy952 240 KSINR 244 (573)
Q Consensus 240 ~~I~~ 244 (573)
++|+|
T Consensus 327 G~iyR 331 (331)
T PF07995_consen 327 GKIYR 331 (331)
T ss_dssp TTEEE
T ss_pred CeEeC
Confidence 99986
No 32
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.98 E-value=8.7e-08 Score=90.24 Aligned_cols=224 Identities=13% Similarity=0.105 Sum_probs=155.3
Q ss_pred eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 38 SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 38 ~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
..++.....|..|+-++ ++.||+++...+.|-+++...+..+++-...-..|.+|.+++ .+.++++|.+. .|.+++.
T Consensus 55 ~fpvp~G~ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dp 131 (353)
T COG4257 55 EFPVPNGSAPFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDP 131 (353)
T ss_pred eeccCCCCCccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecC
Confidence 44555666788888884 789999999999999999987776665433337999999997 67899999877 7888887
Q ss_pred CCCceeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 118 DGTNRKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 118 dg~~~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
.....+.+- ..-.+-...++|+ .|.|+||.. .+.-.|.+..-...+++- ...-..|+||++- .++.||++
T Consensus 132 kt~evt~f~lp~~~a~~nlet~vfD~-~G~lWFt~q--~G~yGrLdPa~~~i~vfp--aPqG~gpyGi~at-pdGsvwya 205 (353)
T COG4257 132 KTLEVTRFPLPLEHADANLETAVFDP-WGNLWFTGQ--IGAYGRLDPARNVISVFP--APQGGGPYGICAT-PDGSVWYA 205 (353)
T ss_pred cccceEEeecccccCCCcccceeeCC-CccEEEeec--cccceecCcccCceeeec--cCCCCCCcceEEC-CCCcEEEE
Confidence 554444432 1233456778998 789999874 333445555544555554 4456789999998 57899999
Q ss_pred eCCCCeEEEEeCCCCcEEEEEeCC-ccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceE-EEcccCCCceeeeeee
Q psy952 194 DAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYR-VLRNTTHRPYDIHVYH 270 (573)
Q Consensus 194 D~~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~-~l~~~~~~p~~i~v~~ 270 (573)
....+.|.+++.-....+++..-. .......|-.+ .++++.|+|.++++++++..+..-.. -|......|+.+.|..
T Consensus 206 slagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~ 285 (353)
T COG4257 206 SLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDR 285 (353)
T ss_pred eccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeecc
Confidence 988899999987544555444311 01222344443 47899999999999999876655332 2333345677776654
No 33
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=6.3e-07 Score=95.57 Aligned_cols=226 Identities=10% Similarity=0.059 Sum_probs=150.0
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
.|+.++.+|.+...+......+....|.+.+++|+|+... ...|+.++++++..+.+.... ......++.+.++.|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La 277 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLA 277 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEE
Confidence 6777788888766665554556678899999999887543 347999999876655443221 2234567888888898
Q ss_pred EEeCCC--CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952 104 WLDRHS--KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA 180 (573)
Q Consensus 104 ~td~~~--~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g 180 (573)
++.... ..|+++++++...+.+..........+++|...+|+++.. +....|+++++++...+.+. .. .....+
T Consensus 278 ~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt--~~-g~~~~~ 354 (448)
T PRK04792 278 LVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT--FE-GEQNLG 354 (448)
T ss_pred EEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe--cC-CCCCcC
Confidence 864333 3699999988776666544344566788998888877753 23568999999876655554 22 222345
Q ss_pred EEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC--ceEEEeccCCcceEEE
Q psy952 181 LTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK--SINRADKFNGRDYRVL 256 (573)
Q Consensus 181 laiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~--~I~~~~~~~g~~~~~l 256 (573)
.++.++++.||++....+ .|+.+++++...+.+........| +++..+..|+++....+ .|+.++ .+|...+.+
T Consensus 355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~-~~G~~~~~l 432 (448)
T PRK04792 355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVS-IDGRFKARL 432 (448)
T ss_pred eeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEE-CCCCceEEC
Confidence 688888999998865433 788899988877665543211233 45556777877654333 366666 467666655
Q ss_pred c
Q psy952 257 R 257 (573)
Q Consensus 257 ~ 257 (573)
.
T Consensus 433 ~ 433 (448)
T PRK04792 433 P 433 (448)
T ss_pred c
Confidence 3
No 34
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.7e-06 Score=84.75 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=152.8
Q ss_pred cccEEEEEcCCC--c--eeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCC-cceEEEcC---CCCCccee
Q psy952 24 KYYVRNMSLDAT--Q--YSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGST-EKERVIRH---DSHGLEGL 93 (573)
Q Consensus 24 ~~~I~~i~l~g~--~--~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~-~~~~i~~~---~~~~p~gl 93 (573)
...|+++.+++. . ...++..+.+|.-|++++..+.||..... .+.|..+.+|.. ..-+++.. ....|.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 457888888733 2 23345678889999999999999999876 677777777652 22223321 12456899
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEc--CCCceeEe--ccC----------CCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAEL--DGTNRKTL--KTA----------IQDPRGITLHPGIGYVYFSSWNLQAYIGKIG 159 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~l--dg~~~~~l--~~~----------~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ 159 (573)
++|..++.||.++...+.|.|..+ +|....++ +.. -.++...-++|.+.+|+..|-+ ..+|...+
T Consensus 95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-~Dri~~y~ 173 (346)
T COG2706 95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-TDRIFLYD 173 (346)
T ss_pred EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-CceEEEEE
Confidence 999999999999999999998876 45444332 111 1236788899999999999987 44565555
Q ss_pred cc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC--cEEEEEe-----CCc--cceeEEEee--
Q psy952 160 MD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK--HKHIVIS-----GQK--VPHVFALTL-- 227 (573)
Q Consensus 160 ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~--~~~~l~~-----~~~--~~~p~~ia~-- 227 (573)
++ |.....-......-..|+-|++.+..+..|++..-+++|....+++. ..+.+-. ... .....+|.+
T Consensus 174 ~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~ 253 (346)
T COG2706 174 LDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP 253 (346)
T ss_pred cccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence 54 43321111012445678999999999999999999999999888873 2222221 110 123344544
Q ss_pred eCCeEEEecCCCCceE--EEeccCCc
Q psy952 228 FEDHIYWTDWNTKSIN--RADKFNGR 251 (573)
Q Consensus 228 ~~~~lywtd~~~~~I~--~~~~~~g~ 251 (573)
++.+||.++.+.++|. +++..+|.
T Consensus 254 dGrFLYasNRg~dsI~~f~V~~~~g~ 279 (346)
T COG2706 254 DGRFLYASNRGHDSIAVFSVDPDGGK 279 (346)
T ss_pred CCCEEEEecCCCCeEEEEEEcCCCCE
Confidence 6788999999988764 55555554
No 35
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.93 E-value=4.3e-07 Score=94.82 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=112.7
Q ss_pred CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE------Ec-CCCCCcceeEEeec------CCc
Q psy952 35 TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV------IR-HDSHGLEGLAVDWV------GRK 101 (573)
Q Consensus 35 ~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i------~~-~~~~~p~glavD~~------~~~ 101 (573)
-..+.++.++..|.+|+|.+ +++||++....++|++++.++...+.+ +. .+...+.|||+++. ++.
T Consensus 20 f~~~~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 20 FDKKVLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred cEEEEEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 34566778899999999987 679999998788999998765433222 11 24567899999853 467
Q ss_pred EEEEeC---------CCCeEEEEEcCCC-----ceeEeccCC-----CCcceEEEeCCCceEEEEecCC-----------
Q psy952 102 LYWLDR---------HSKQLDVAELDGT-----NRKTLKTAI-----QDPRGITLHPGIGYVYFSSWNL----------- 151 (573)
Q Consensus 102 LY~td~---------~~~~I~~~~ldg~-----~~~~l~~~~-----~~P~~Iavdp~~g~LYwtd~~~----------- 151 (573)
||++-+ ...+|.++.++.. ..++|+..+ ..-..|+++| .|+||++-...
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~ 177 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLP 177 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCc
Confidence 999742 2457888887632 224454332 2367899999 67899974211
Q ss_pred --------------------cCeEEEEeccCCC----------cEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952 152 --------------------QAYIGKIGMDGSN----------FTRILTHEDDIAWPNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 152 --------------------~~~I~r~~ldG~~----------~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~ 197 (573)
.++|.|++.||+. +..|. .-++..|.||++|+ +++||.+|.+.
T Consensus 178 ~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIy--A~G~RNp~Gla~dp-~G~Lw~~e~Gp 250 (454)
T TIGR03606 178 NQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIF--TYGHRNPQGLAFTP-DGTLYASEQGP 250 (454)
T ss_pred chhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEE--EEeccccceeEECC-CCCEEEEecCC
Confidence 2379999999973 23455 57899999999998 79999998764
No 36
>KOG4499|consensus
Probab=98.88 E-value=2e-07 Score=85.80 Aligned_cols=193 Identities=14% Similarity=0.204 Sum_probs=120.8
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-E---------EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-R---------VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~---------i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
.|..|+..++.|||+|+..+.|.|.+....... . ++..-...|...++- -+ .+....++
T Consensus 18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~ag~ilpv~~~~q~~~v~----------~G-~kf~i~nw 86 (310)
T KOG4499|consen 18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSAGFILPVEGGPQEFAVG----------CG-SKFVIVNW 86 (310)
T ss_pred CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcceeEEEEecCCCceEEEe----------ec-ceEEEEEc
Confidence 577899999999999998877777665432211 1 111112334433332 11 23444555
Q ss_pred CCCceeEec-cC---------CCCcceEEEeCCCceEEEEecCC--------cCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 118 DGTNRKTLK-TA---------IQDPRGITLHPGIGYVYFSSWNL--------QAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 118 dg~~~~~l~-~~---------~~~P~~Iavdp~~g~LYwtd~~~--------~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+|.....++ .. -.+-+.--|||..++ |.-.... ...+ +..+.|...+.+. ..+..||
T Consensus 87 d~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~L-y~~~~~h~v~~i~---~~v~IsN 161 (310)
T KOG4499|consen 87 DGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGEL-YSWLAGHQVELIW---NCVGISN 161 (310)
T ss_pred ccccceeeeeeeccccCchHHhcccccCccCCCCce-eeeeeccccccccccccEE-EEeccCCCceeee---hhccCCc
Confidence 554322211 11 112445567884444 5432221 1233 3344444455554 6788899
Q ss_pred eEEEeccCCeEEEEeCCCCeEEEEeCC--C---CcEEEEEeCC-----ccceeEEEeee-CCeEEEecCCCCceEEEecc
Q psy952 180 ALTLDYFTERLYWADAHLDYIASVDLD--G---KHKHIVISGQ-----KVPHVFALTLF-EDHIYWTDWNTKSINRADKF 248 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~~~I~~~~~d--G---~~~~~l~~~~-----~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~ 248 (573)
||+.|.+.+++|++|+.+-.|...++| + +++++|+.-. ...-|.|++++ ++.||++-|..++|+++++.
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~ 241 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPT 241 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCC
Confidence 999999999999999999999777755 2 5666666411 13568999995 68999999999999999999
Q ss_pred CCcceEEE
Q psy952 249 NGRDYRVL 256 (573)
Q Consensus 249 ~g~~~~~l 256 (573)
+|+....+
T Consensus 242 tGK~L~ei 249 (310)
T KOG4499|consen 242 TGKILLEI 249 (310)
T ss_pred CCcEEEEE
Confidence 99866554
No 37
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=98.87 E-value=6.4e-07 Score=84.48 Aligned_cols=218 Identities=12% Similarity=0.078 Sum_probs=145.9
Q ss_pred ccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC---CCCCcceeEEeecCC
Q psy952 25 YYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH---DSHGLEGLAVDWVGR 100 (573)
Q Consensus 25 ~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~---~~~~p~glavD~~~~ 100 (573)
+.|-+++.... ..+.++.....|.+|.+++ ++..|++|... .|.|++.+....+.+-.. .-...+...||. .+
T Consensus 83 gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~-~G 159 (353)
T COG4257 83 GAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTRFPLPLEHADANLETAVFDP-WG 159 (353)
T ss_pred ccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEEeecccccCCCcccceeeCC-Cc
Confidence 56777777544 3445566667799999996 78899999877 899998866555444221 224556678885 67
Q ss_pred cEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCC-CCC
Q psy952 101 KLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI-AWP 178 (573)
Q Consensus 101 ~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l-~~P 178 (573)
+|+||.+ .+---+++.-....+++- .....|+||.+.| +|.+|++... ...|.|++.-....+++.. .+.+ ..-
T Consensus 160 ~lWFt~q-~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atp-dGsvwyasla-gnaiaridp~~~~aev~p~-P~~~~~gs 235 (353)
T COG4257 160 NLWFTGQ-IGAYGRLDPARNVISVFPAPQGGGPYGICATP-DGSVWYASLA-GNAIARIDPFAGHAEVVPQ-PNALKAGS 235 (353)
T ss_pred cEEEeec-cccceecCcccCceeeeccCCCCCCcceEECC-CCcEEEEecc-ccceEEcccccCCcceecC-CCcccccc
Confidence 8988875 333335555444545544 3445699999999 7889998753 4567777654334333331 1221 122
Q ss_pred ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEE-EEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCc
Q psy952 179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHI-VISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGR 251 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~-l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~ 251 (573)
..|-.| .-++++.++++++.+++++..-..=.. -+.+. -.+|++|-|+. ++++.+|+..+.|.|++..+-+
T Consensus 236 Rriwsd-pig~~wittwg~g~l~rfdPs~~sW~eypLPgs-~arpys~rVD~~grVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 236 RRIWSD-PIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGS-KARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred cccccC-ccCcEEEeccCCceeeEeCcccccceeeeCCCC-CCCcceeeeccCCcEEeeccccCceeecCcccce
Confidence 345556 468899999999999999987544222 12233 57899999975 6677779999999999876643
No 38
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.87 E-value=1e-06 Score=87.80 Aligned_cols=186 Identities=18% Similarity=0.230 Sum_probs=120.6
Q ss_pred ceEEEEEEcCCCEEEEEECCC------------CeEEEEEcCCCcc-eEE-EcCC----CCCcceeEEeecC-----CcE
Q psy952 46 NVVAMDFHYKENRFYFADVAA------------KTIYRSRVGSTEK-ERV-IRHD----SHGLEGLAVDWVG-----RKL 102 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~------------~~I~~~~~~g~~~-~~i-~~~~----~~~p~glavD~~~-----~~L 102 (573)
++.++.+| ..++||+.|.+. .+|..+++..... .++ +... -.....|+||... +.+
T Consensus 2 sV~~v~iD-~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~a 80 (287)
T PF03022_consen 2 SVQRVQID-ECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFA 80 (287)
T ss_dssp -EEEEEE--TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEE
T ss_pred cccEEEEc-CCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEE
Confidence 35677888 478888888653 3788888875432 222 2212 2456779999754 479
Q ss_pred EEEeCCCCeEEEEEcCC-CceeEeccC-------------------CCCcceEEEeC---CCceEEEEecCCcCeEEEEe
Q psy952 103 YWLDRHSKQLDVAELDG-TNRKTLKTA-------------------IQDPRGITLHP---GIGYVYFSSWNLQAYIGKIG 159 (573)
Q Consensus 103 Y~td~~~~~I~~~~ldg-~~~~~l~~~-------------------~~~P~~Iavdp---~~g~LYwtd~~~~~~I~r~~ 159 (573)
|+||.+...|.|+++.. ...+++... .....|||+.| ..++|||.-.. ..+++++.
T Consensus 81 YItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~ls-s~~ly~v~ 159 (287)
T PF03022_consen 81 YITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLS-SRKLYRVP 159 (287)
T ss_dssp EEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEE
T ss_pred EEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCC-CCcEEEEE
Confidence 99999999999999864 444444310 01146788876 45689999743 45677776
Q ss_pred cc----CC---------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC----CcEEEEEeCCc-cce
Q psy952 160 MD----GS---------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG----KHKHIVISGQK-VPH 221 (573)
Q Consensus 160 ld----G~---------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG----~~~~~l~~~~~-~~~ 221 (573)
.. .+ ..+.+. .......|+++|. ++.||+++...+.|.+.+.++ .+.++|+...+ +..
T Consensus 160 T~~L~~~~~~~~~~~~~~v~~lG---~k~~~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~ 235 (287)
T PF03022_consen 160 TSVLRDPSLSDAQALASQVQDLG---DKGSQSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW 235 (287)
T ss_dssp HHHHCSTT--HHH-HHHT-EEEE---E---SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS
T ss_pred HHHhhCccccccccccccceecc---ccCCCCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec
Confidence 42 11 122232 2223457999995 999999999999999999998 56677777655 889
Q ss_pred eEEEeeeC---CeEEEecC
Q psy952 222 VFALTLFE---DHIYWTDW 237 (573)
Q Consensus 222 p~~ia~~~---~~lywtd~ 237 (573)
|.+|++.. ++||+.-.
T Consensus 236 pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 236 PDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEEEE-T--TS-EEEEE-
T ss_pred cceeeeccccCceEEEEEC
Confidence 99999977 88998753
No 39
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.86 E-value=1e-06 Score=89.35 Aligned_cols=205 Identities=17% Similarity=0.195 Sum_probs=128.6
Q ss_pred CCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC---------CCCeEEEEEcCCCce
Q psy952 56 ENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------HSKQLDVAELDGTNR 122 (573)
Q Consensus 56 ~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------~~~~I~~~~ldg~~~ 122 (573)
..++|++|.. .++|+.++.+.......+..+ ..|.++ +.+.++.||++.+ ..+.|.++++.....
T Consensus 12 ~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G-~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 12 ARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGG-FLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred CCEEEEECCcccccCceEEEEECCCCEEEEEEEcc-CCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 5678998886 378999988765544445555 589997 9999999999998 788999999875443
Q ss_pred e-Eecc-------CCCCcceEEEeCCCceEEEEecCCcCeEEEEec------------------------------cCCC
Q psy952 123 K-TLKT-------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM------------------------------DGSN 164 (573)
Q Consensus 123 ~-~l~~-------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l------------------------------dG~~ 164 (573)
. .|.. ....|..++|+|..++||++++.....+.++++ ||+.
T Consensus 90 ~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~ 169 (352)
T TIGR02658 90 IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSL 169 (352)
T ss_pred EeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCce
Confidence 3 3321 244566999999999999998652333333332 4443
Q ss_pred cE---------EEEecCCCC---------CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe------CCc--
Q psy952 165 FT---------RILTHEDDI---------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS------GQK-- 218 (573)
Q Consensus 165 ~~---------~l~~~~~~l---------~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~------~~~-- 218 (573)
.+ ... ...+ ..| .+.+.++++||.... +.|+.+++.+........ ...
T Consensus 170 ~~v~~d~~g~~~~~--~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 170 AKVGYGTKGNPKIK--PTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred EEEEecCCCceEEe--eeeeecCCccccccCC---ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccccc
Confidence 33 111 0111 233 223335666666666 999999987654332211 100
Q ss_pred cceeEE---Eee--eCCeEEEe-cCC--------CCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952 219 VPHVFA---LTL--FEDHIYWT-DWN--------TKSINRADKFNGRDYRVLRNTTHRPYDIHVY 269 (573)
Q Consensus 219 ~~~p~~---ia~--~~~~lywt-d~~--------~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~ 269 (573)
--+|.| +++ .+++||++ ... .+.|..++..+++....+..+ ..|.+|++-
T Consensus 244 ~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG-~~~~~iavS 307 (352)
T TIGR02658 244 GWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG-HEIDSINVS 307 (352)
T ss_pred ccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC-CceeeEEEC
Confidence 012333 555 57899994 322 257999998888777666543 366666653
No 40
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.86 E-value=1.5e-09 Score=69.70 Aligned_cols=32 Identities=50% Similarity=1.217 Sum_probs=29.7
Q ss_pred cCCCceeeCCCCceecCCcCcCCCCCCCCCCCC
Q psy952 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557 (573)
Q Consensus 525 C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe 557 (573)
|...+|+|.++ .|||..|+|||..||+|+|||
T Consensus 2 C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence 55679999988 899999999999999999998
No 41
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.86 E-value=5.4e-09 Score=71.33 Aligned_cols=42 Identities=29% Similarity=0.763 Sum_probs=38.3
Q ss_pred ceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEec
Q psy952 142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDY 185 (573)
Q Consensus 142 g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~ 185 (573)
++|||||++..++|++++|||+.+++++ ...+..|.|||||+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi--~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVI--SDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEE--ESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEE--ECCCCCcCEEEECC
Confidence 5899999986669999999999999999 78899999999984
No 42
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.84 E-value=8.4e-07 Score=85.72 Aligned_cols=176 Identities=16% Similarity=0.244 Sum_probs=103.8
Q ss_pred cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC--Cc--ce---EE--Ec--CCCCCcc
Q psy952 24 KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS--TE--KE---RV--IR--HDSHGLE 91 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~--~~---~i--~~--~~~~~p~ 91 (573)
...|+.++++|.... +.+.+++.+.||+|- .++++.+++-..+.|+.+.++. .. .. .+ -. .+....+
T Consensus 43 ~~~i~els~~G~vlr~i~l~g~~D~EgI~y~-g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~E 121 (248)
T PF06977_consen 43 PGEIYELSLDGKVLRRIPLDGFGDYEGITYL-GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFE 121 (248)
T ss_dssp TTEEEEEETT--EEEEEE-SS-SSEEEEEE--STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--E
T ss_pred CCEEEEEcCCCCEEEEEeCCCCCCceeEEEE-CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceE
Confidence 357888888876543 446677889999996 5677777887788898888733 21 11 11 11 1234589
Q ss_pred eeEEeecCCcEEEEeCCC-CeEEEEEc--CCCceeEec--------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952 92 GLAVDWVGRKLYWLDRHS-KQLDVAEL--DGTNRKTLK--------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 92 glavD~~~~~LY~td~~~-~~I~~~~l--dg~~~~~l~--------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l 160 (573)
|||+|..+++||++.... ..|+.++. .+....+.. ..+.+|.+|++||.++.||+... ....|...+.
T Consensus 122 Gla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~-es~~l~~~d~ 200 (248)
T PF06977_consen 122 GLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSD-ESRLLLELDR 200 (248)
T ss_dssp EEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEET-TTTEEEEE-T
T ss_pred EEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEEC-CCCeEEEECC
Confidence 999999999999986433 35666665 222222211 14567999999999999999974 4778999999
Q ss_pred cCCCcEEEEecC------CCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952 161 DGSNFTRILTHE------DDIAWPNALTLDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 161 dG~~~~~l~~~~------~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~ 203 (573)
+|.....+.-.. ..+..|.|||+|+ +++||++.- -+..+++
T Consensus 201 ~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~LYIvsE-pNlfy~f 247 (248)
T PF06977_consen 201 QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGNLYIVSE-PNLFYRF 247 (248)
T ss_dssp T--EEEEEE-STTGGG-SS---SEEEEEE-T-T--EEEEET-TTEEEEE
T ss_pred CCCEEEEEEeCCcccCcccccCCccEEEECC-CCCEEEEcC-CceEEEe
Confidence 998655544101 3467899999995 789999874 4455554
No 43
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.81 E-value=2.6e-06 Score=90.75 Aligned_cols=227 Identities=12% Similarity=0.122 Sum_probs=147.6
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.++++|.+...+......+..++|.+.+++|+++... ...|++++++++..+.+.... .....+++.+.+++|
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~-g~~~~~~~SpDG~~l 262 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFR-GINGAPSFSPDGRRL 262 (433)
T ss_pred EEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC-CCccCceECCCCCEE
Confidence 35777888887666555444456788999999999988654 347999999876655443222 233456788888888
Q ss_pred EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++-. +...|+++++.+...+.+..........+++|...+|+++. ......|+++++++...+.+. ... ....
T Consensus 263 ~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt--~~g-~~~~ 339 (433)
T PRK04922 263 ALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT--FQG-NYNA 339 (433)
T ss_pred EEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee--cCC-CCcc
Confidence 87643 33479999998877665554333345678899877777764 223467999998876655554 222 2344
Q ss_pred eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC--CCCceEEEeccCCcceEE
Q psy952 180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW--NTKSINRADKFNGRDYRV 255 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~--~~~~I~~~~~~~g~~~~~ 255 (573)
.+++.++++.|+++.... ..|+.+++++...+.+..+.....| ..+.++..|+++.. ....|+.++. +|...+.
T Consensus 340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~-~g~~~~~ 417 (433)
T PRK04922 340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVST-DGRVRQR 417 (433)
T ss_pred CEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEE
Confidence 678888899999876433 3689999987776655543211222 34445667776633 2345777764 5555554
Q ss_pred Ec
Q psy952 256 LR 257 (573)
Q Consensus 256 l~ 257 (573)
+.
T Consensus 418 l~ 419 (433)
T PRK04922 418 LV 419 (433)
T ss_pred cc
Confidence 43
No 44
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.80 E-value=6.2e-06 Score=86.87 Aligned_cols=224 Identities=9% Similarity=0.031 Sum_probs=146.7
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCE-EEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENR-FYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK 101 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~ 101 (573)
..|+.++.+|.+...+.... ......|.+..++ +|++... ...|+++++.++..+.+.... ......++.+.+++
T Consensus 169 ~~l~~~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~-g~~~~~~~SPDG~~ 246 (419)
T PRK04043 169 SNIVLADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ-GMLVVSDVSKDGSK 246 (419)
T ss_pred ceEEEECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC-CcEEeeEECCCCCE
Confidence 57889999998776555543 5667889988875 7776554 468999999887776665322 22223445566778
Q ss_pred EEEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCC
Q psy952 102 LYWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWP 178 (573)
Q Consensus 102 LY~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P 178 (573)
|+++.. +...|+++++++...+.|......-......|....|||+.. ...+.|++++++|...+.+. ......
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g~~~- 323 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHGKNN- 323 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCCCcC-
Confidence 887654 345899999988776655432211223368887778888763 33568999999988776655 232222
Q ss_pred ceEEEeccCCeEEEEeCCC--------CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC--CCceEEEecc
Q psy952 179 NALTLDYFTERLYWADAHL--------DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADKF 248 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~--------~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~~~I~~~~~~ 248 (573)
..+++++++|.++-... ..|+.+++++...+.|.... ....-..+.++..|+++... ...|..++ .
T Consensus 324 --~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~-~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~-l 399 (419)
T PRK04043 324 --SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG-VNQFPRFSSDGGSIMFIKYLGNQSALGIIR-L 399 (419)
T ss_pred --ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-CcCCeEECCCCCEEEEEEccCCcEEEEEEe-c
Confidence 37888899887775432 47999999988877776543 22223355567777776432 23466776 4
Q ss_pred CCcceEEEc
Q psy952 249 NGRDYRVLR 257 (573)
Q Consensus 249 ~g~~~~~l~ 257 (573)
+|.....+.
T Consensus 400 ~g~~~~~l~ 408 (419)
T PRK04043 400 NYNKSFLFP 408 (419)
T ss_pred CCCeeEEee
Confidence 666555443
No 45
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.79 E-value=7.1e-06 Score=86.95 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=146.1
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
.|+.++.+|.....+..........+|.+.+++|+|+.... ..|+.+++.++....+.... .....+++.+.++.||
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~-~~~~~~~~spDg~~l~ 249 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFP-GMNGAPAFSPDGSKLA 249 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEEE
Confidence 58888888776666554444467788999999999987543 57999998766544443221 2345577877778898
Q ss_pred EEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952 104 WLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA 180 (573)
Q Consensus 104 ~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g 180 (573)
++... ...|++.++.+...+.+..........++.|...+|+++.. +....|+++++++...+.+. ........
T Consensus 250 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---~~~~~~~~ 326 (417)
T TIGR02800 250 VSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---FRGGYNAS 326 (417)
T ss_pred EEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cCCCCccC
Confidence 87543 34699999987766555533222345577887777877643 33458999999887665554 22334557
Q ss_pred EEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC-ceEEEeccCCcceEEE
Q psy952 181 LTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK-SINRADKFNGRDYRVL 256 (573)
Q Consensus 181 laiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~-~I~~~~~~~g~~~~~l 256 (573)
+++.+.+.+|+++.... .+|..+++++...+.+........| .++.++..|+++....+ .+..+...+|.....+
T Consensus 327 ~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~p-~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 327 PSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTGLDESP-SFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCCCCCCc-eECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 78888888999987643 3789999988766665543212222 34456777887755432 3333444566555444
No 46
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.79 E-value=4.4e-06 Score=89.03 Aligned_cols=226 Identities=15% Similarity=0.083 Sum_probs=148.2
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.++.+|.+...+......+..+.|.+.+++|+++... ...|+.+++.++..+.+.... ....+.++.+.+++|
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l 260 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFP-GMTFAPRFSPDGRKV 260 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCC-CcccCcEECCCCCEE
Confidence 37888888888776665555567889999988888887543 468999999877665443222 234566777778888
Q ss_pred EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++-.. ...|+++++++...+.|..........++.|...+|+++. ......|++++++|...+.+. ... ..-.
T Consensus 261 a~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt--~~~-~~~~ 337 (435)
T PRK05137 261 VMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRIS--FGG-GRYS 337 (435)
T ss_pred EEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEee--cCC-Cccc
Confidence 776533 3469999998877666654433455678888777777664 333568999999988766665 221 1223
Q ss_pred eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC--C---CceEEEeccCCcc
Q psy952 180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--T---KSINRADKFNGRD 252 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~---~~I~~~~~~~g~~ 252 (573)
..++.+++++|+++.... ..|..++++|...+.+..+. .......+-++..||++-.. . ..|+.++. +|..
T Consensus 338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl-~g~~ 415 (435)
T PRK05137 338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL-TGRN 415 (435)
T ss_pred CeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC-CCCc
Confidence 467788889998876433 47899999887776654432 11112233356677775332 1 36888875 4444
Q ss_pred eEEE
Q psy952 253 YRVL 256 (573)
Q Consensus 253 ~~~l 256 (573)
.+.+
T Consensus 416 ~~~l 419 (435)
T PRK05137 416 EREV 419 (435)
T ss_pred eEEc
Confidence 4444
No 47
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.79 E-value=1.3e-06 Score=83.69 Aligned_cols=200 Identities=13% Similarity=0.164 Sum_probs=141.6
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEE-EeCCCCeEEEEEcCCCce
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYW-LDRHSKQLDVAELDGTNR 122 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~-td~~~~~I~~~~ldg~~~ 122 (573)
..++.+|+|++.++.||-+-.....|..+.++|....++-..+++.|++|++ ++++.|+ +|...++++.+.++-...
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEEEcCCcc
Confidence 3458899999999999999877789999999998888887788999999987 6777777 566677888877764422
Q ss_pred eE--------eccC---CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEe--cCCC----CCCCceEEEec
Q psy952 123 KT--------LKTA---IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILT--HEDD----IAWPNALTLDY 185 (573)
Q Consensus 123 ~~--------l~~~---~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~--~~~~----l~~P~glaiD~ 185 (573)
.. |... -..-.|||-||..+.||++--.....|+...+.-....+-+. .... +..-+|+.+|+
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~ 242 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA 242 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence 11 1111 112679999999999999976556678777754322111110 0001 23347999999
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEEe--C-----CccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952 186 FTERLYWADAHLDYIASVDLDGKHKHIVIS--G-----QKVPHVFALTLF-EDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~--~-----~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~ 246 (573)
.++.|++-....+.+..++.+|..+..+.- + ..+++|-|||++ ++.||++- ..+..+++.
T Consensus 243 ~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS-EPnlfy~F~ 310 (316)
T COG3204 243 ITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS-EPNLFYRFT 310 (316)
T ss_pred CCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe-cCCcceecc
Confidence 999999998888999999999987655532 1 127889999996 56788763 233444443
No 48
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=7.1e-06 Score=87.12 Aligned_cols=227 Identities=12% Similarity=0.094 Sum_probs=149.4
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEEC--CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADV--AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.++.+|.+...+.........++|.+.+++|.++.. ....|+.++++++..+.+.... .....+++.+.+++|
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~-~~~~~~~~SPDG~~L 257 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP-RHNGAPAFSPDGSKL 257 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC-CCcCCeEECCCCCEE
Confidence 3688899998876665555556778999999988887643 2457999999876655444221 234457888888899
Q ss_pred EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE-ecCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS-SWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt-d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++... ...|+++++++...+.+..........++.|....|+++ +.+....|+++++++...+.+. .......
T Consensus 258 a~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt---~~~~~~~ 334 (429)
T PRK03629 258 AFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRIT---WEGSQNQ 334 (429)
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEee---cCCCCcc
Confidence 987543 336999999887766665444456778899987777555 4333568999999987665554 2222334
Q ss_pred eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC-C-ceEEEeccCCcceEE
Q psy952 180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT-K-SINRADKFNGRDYRV 255 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~-~-~I~~~~~~~g~~~~~ 255 (573)
..++.+++++|+++.... ..|+.+++++...+.|.... ......++-++..|+++.... . .|+.++ .+|...+.
T Consensus 335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~-~~G~~~~~ 412 (429)
T PRK03629 335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF-LDETPSIAPNGTMVIYSSSQGMGSVLNLVS-TDGRFKAR 412 (429)
T ss_pred CEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEE-CCCCCeEE
Confidence 677888888888875433 46888999887766655321 112223445666677664332 2 345555 46766665
Q ss_pred Ec
Q psy952 256 LR 257 (573)
Q Consensus 256 l~ 257 (573)
|.
T Consensus 413 l~ 414 (429)
T PRK03629 413 LP 414 (429)
T ss_pred Cc
Confidence 54
No 49
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=9.1e-06 Score=86.54 Aligned_cols=225 Identities=12% Similarity=0.084 Sum_probs=145.9
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
.|+.++.+|.+...+......+..+.|.+.+++|+++... ...|++++++++..+.+.... ......++.+.+++|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~-g~~~~~~~SpDG~~la 258 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE-GLNGAPAWSPDGSKLA 258 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC-CCcCCeEECCCCCEEE
Confidence 4777788887765555554556788999999999776543 347999999877665543222 2333567777788888
Q ss_pred EEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCce
Q psy952 104 WLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNA 180 (573)
Q Consensus 104 ~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~g 180 (573)
++-.. ...|+++++++...+.|..........+++|....||++.. .....|+++++++...+.+. ... .....
T Consensus 259 ~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt--~~~-~~~~~ 335 (430)
T PRK00178 259 FVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT--FVG-NYNAR 335 (430)
T ss_pred EEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCC-CCccc
Confidence 76533 34799999988776655543333455678887777877642 23568999998876655554 121 22234
Q ss_pred EEEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcceEEE
Q psy952 181 LTLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRDYRVL 256 (573)
Q Consensus 181 laiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~~~~l 256 (573)
.++.++++.|+++....+ .|+.+++++...+.+........| .++..+..|+++.... ..|+.++. +|...+.+
T Consensus 336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~-~g~~~~~l 413 (430)
T PRK00178 336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSI-NGRVRLPL 413 (430)
T ss_pred eEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEEC-CCCceEEC
Confidence 577888999998865433 688999988777666543211233 4555677888875433 45676664 55554444
No 50
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.75 E-value=1.2e-05 Score=85.40 Aligned_cols=227 Identities=11% Similarity=0.080 Sum_probs=144.3
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.++.+|.+...+......+..++|.+.+++|+++... ...|+.+++.++....+.... ......++.+.+++|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~-g~~~~~~~SPDG~~l 254 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK-GSNSAPAWSPDGRTL 254 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC-CCccceEECCCCCEE
Confidence 46888888887765554444456688999989898887643 347999999876655443222 234567788888889
Q ss_pred EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++-. +...|+++++++...+.|..........+++|...+|+++. .+....|+++++++...+.+. ... ....
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt--~~g-~~~~ 331 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT--FTG-SYNT 331 (427)
T ss_pred EEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe--cCC-CCcC
Confidence 87643 33478899988776665544333345567899877777664 233568999998876655544 222 2223
Q ss_pred eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEec-CC-CCceEEEeccCCcceEE
Q psy952 180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTD-WN-TKSINRADKFNGRDYRV 255 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd-~~-~~~I~~~~~~~g~~~~~ 255 (573)
..++.+++++|+++.... ..|+.+++++...+.+.... ....-..+-++..||++- .. ...|+.++. +|...+.
T Consensus 332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~-~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~ 409 (427)
T PRK02889 332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT-RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQR 409 (427)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC-CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEE
Confidence 567888889998876443 36889998877766655432 121123344566666653 33 233666664 6665555
Q ss_pred Ec
Q psy952 256 LR 257 (573)
Q Consensus 256 l~ 257 (573)
+.
T Consensus 410 l~ 411 (427)
T PRK02889 410 LS 411 (427)
T ss_pred ee
Confidence 53
No 51
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.72 E-value=7.9e-06 Score=84.54 Aligned_cols=247 Identities=11% Similarity=0.064 Sum_probs=140.3
Q ss_pred CEEEEEec-ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-C------C
Q psy952 17 PWLIFSNK-YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-S------H 88 (573)
Q Consensus 17 ~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~------~ 88 (573)
.+++++++ ..|.+|++...+....+.....+.++++.+.+++||+++...+.+..++.........+..+ + .
T Consensus 49 r~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~ 128 (369)
T PF02239_consen 49 RYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES 128 (369)
T ss_dssp SEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred CEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence 46777764 68999999877654445556779999999999999999999999999987664433333221 1 2
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~ 166 (573)
++.+|...+.....+++-...++|++++...... ...+.....|.+..+||..+++|.+... ..+|..+++......
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~-sn~i~viD~~~~k~v 207 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG-SNKIAVIDTKTGKLV 207 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG-GTEEEEEETTTTEEE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc-cceeEEEeeccceEE
Confidence 3456655544444455567789999999765322 2233455679999999988888886432 223333333221111
Q ss_pred E------------------------------------EEecCCC-----------------CCCCceEEEeccCCeEEEE
Q psy952 167 R------------------------------------ILTHEDD-----------------IAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 167 ~------------------------------------l~~~~~~-----------------l~~P~glaiD~~~~~LYw~ 193 (573)
. ++. ... ...|..+...|.+.+||+.
T Consensus 208 ~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig-~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 208 ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIG-TDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE---TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred EEeeccccccccccccccCCCcceEEeeccccceeccccc-CCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 1 111 000 1123445666666666665
Q ss_pred ---eCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCC-ceEEEeccCCcceEEEcccCCCceeee
Q psy952 194 ---DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTK-SINRADKFNGRDYRVLRNTTHRPYDIH 267 (573)
Q Consensus 194 ---D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~-~I~~~~~~~g~~~~~l~~~~~~p~~i~ 267 (573)
....+.|..++..-.....-+....-..+..+.+ ++.++|++.|..+ +|..++..+.+....+. ...|.|+-
T Consensus 287 ~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~--~~tP~G~f 364 (369)
T PF02239_consen 287 TFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP--VPTPTGKF 364 (369)
T ss_dssp -TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE----SEEEEE
T ss_pred ccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE--eeCCCeEe
Confidence 3445678888876553211111100112556665 5778999999998 99999988888877776 66788754
No 52
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=98.70 E-value=4.8e-08 Score=66.63 Aligned_cols=41 Identities=32% Similarity=0.663 Sum_probs=39.1
Q ss_pred CEEEEEECCCC-eEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952 57 NRFYFADVAAK-TIYRSRVGSTEKERVIRHDSHGLEGLAVDW 97 (573)
Q Consensus 57 ~~ly~~d~~~~-~I~~~~~~g~~~~~i~~~~~~~p~glavD~ 97 (573)
++|||+|.... .|.+++++|+..++++...+..|.||||||
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence 58999999999 999999999999999999999999999996
No 53
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.70 E-value=8.2e-09 Score=67.89 Aligned_cols=35 Identities=57% Similarity=1.142 Sum_probs=32.0
Q ss_pred CCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952 409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 444 (573)
Q Consensus 409 ~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~ 444 (573)
.|..+ +|+|.++.||+..|+||+..||.|+|||.+
T Consensus 2 ~C~~~-~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 2 TCPPG-EFRCGNGQCIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp SSSTT-EEEETTSSEEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCcCC-eeEcCCCCEEChHHcCCCCCCCCCCccccc
Confidence 46667 999999999999999999999999999964
No 54
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.68 E-value=8.7e-06 Score=84.23 Aligned_cols=217 Identities=14% Similarity=0.065 Sum_probs=134.7
Q ss_pred CEEEEEe--cccEEEEEcCCCceeecccCCcc-eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952 17 PWLIFSN--KYYVRNMSLDATQYSLVHQDLLN-VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL 93 (573)
Q Consensus 17 ~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~-~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl 93 (573)
.+++++. .+.|..|+.+..+....+..... +.++.+.+.++++|+++. .+.|.++++.......-+..+ ..|.++
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-dg~vsviD~~~~~~v~~i~~G-~~~~~i 83 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-DGTVSVIDLATGKVVATIKVG-GNPRGI 83 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-TSEEEEEETTSSSEEEEEE-S-SEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-CCeEEEEECCcccEEEEEecC-CCcceE
Confidence 3444454 57899999887655433443344 456778887889999985 579999999766544344455 589999
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCCCce-eEecc-C----CC--CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKT-A----IQ--DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF 165 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~-~----~~--~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~ 165 (573)
++.+.++.||+++...+.|.+++...... +.+-. . .. .+.+|...|.+ ..|+......+.|+.++......
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~-~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGR-PEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSS-SEEEEEETTTTEEEEEETTTSSC
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCC-CEEEEEEccCCeEEEEEeccccc
Confidence 99999999999999999999998765433 33321 1 12 24466666644 44555445578899988665432
Q ss_pred EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEe--e-eCCeEEEecC
Q psy952 166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALT--L-FEDHIYWTDW 237 (573)
Q Consensus 166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia--~-~~~~lywtd~ 237 (573)
..+.. ...-..|.+..+|+.+.++|.+-...++|..++........++.....++|..++ . .+...+|+-.
T Consensus 163 ~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~ 236 (369)
T PF02239_consen 163 LKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATS 236 (369)
T ss_dssp EEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEE
T ss_pred cceee-ecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeec
Confidence 22110 2344678999999988889998888889999998876655554432255553333 2 3444666543
No 55
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.68 E-value=1.1e-08 Score=66.61 Aligned_cols=34 Identities=59% Similarity=1.333 Sum_probs=30.7
Q ss_pred CCCCCceecCCCcccCCCcccCCCCCCCCCCCCCC
Q psy952 410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 444 (573)
Q Consensus 410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~ 444 (573)
|.++ +|+|.++.|||..++|||..||.|+|||..
T Consensus 1 C~~~-~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 1 CPPN-EFRCANGRCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCCC-eEEcCCCCeeCHHHcCCCccCCCCCccccc
Confidence 3455 899999999999999999999999999964
No 56
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.64 E-value=8.7e-06 Score=78.59 Aligned_cols=215 Identities=17% Similarity=0.196 Sum_probs=142.3
Q ss_pred ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-----CCcceEEEc-C------CCCCcceeEEeecCC------
Q psy952 39 LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-----STEKERVIR-H------DSHGLEGLAVDWVGR------ 100 (573)
Q Consensus 39 ~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-----g~~~~~i~~-~------~~~~p~glavD~~~~------ 100 (573)
.+-+.+.++.||++.+ .+.+|++|...+....++.+ |.....++. . ....|.|+.+.....
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3456789999999997 66889999988888888876 433222222 1 135799999873222
Q ss_pred -------cEEEEeCCCCeEEEEEc--CCC---ceeEecc---CCCCcceEEEeCC--CceEEEEecCCcCeEEEEeccCC
Q psy952 101 -------KLYWLDRHSKQLDVAEL--DGT---NRKTLKT---AIQDPRGITLHPG--IGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 101 -------~LY~td~~~~~I~~~~l--dg~---~~~~l~~---~~~~P~~Iavdp~--~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
.||.+ +.++|..-+. +-. ...+++. ...-=+||||-.. ..+||-+|.. +.+|.+. |++
T Consensus 96 g~~~~a~Fif~t--EdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~-~g~IDVF--d~~ 170 (336)
T TIGR03118 96 GITGPSRFLFVT--EDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFR-QGRIDVF--KGS 170 (336)
T ss_pred CcccceeEEEEe--CCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccC-CCceEEe--cCc
Confidence 13333 3455654442 222 1112222 1223568888743 5789999974 7888877 444
Q ss_pred CcEEEEecCCC--------CCCCceEEEeccCCeEEEEeC-------------CCCeEEEEeCCCCcEEEEEeCCcccee
Q psy952 164 NFTRILTHEDD--------IAWPNALTLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKVPHV 222 (573)
Q Consensus 164 ~~~~l~~~~~~--------l~~P~glaiD~~~~~LYw~D~-------------~~~~I~~~~~dG~~~~~l~~~~~~~~p 222 (573)
..++.+ ... -..|.+|.. .+++||++=+ +.+.|-.++++|...+.+.++..|..|
T Consensus 171 f~~~~~--~g~F~DP~iPagyAPFnIqn--ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaP 246 (336)
T TIGR03118 171 FRPPPL--PGSFIDPALPAGYAPFNVQN--LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAP 246 (336)
T ss_pred cccccC--CCCccCCCCCCCCCCcceEE--ECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCC
Confidence 443322 111 123555554 4899999833 345899999999999988876669999
Q ss_pred EEEee-------eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCc
Q psy952 223 FALTL-------FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRP 263 (573)
Q Consensus 223 ~~ia~-------~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p 263 (573)
.||++ +.+.|.+.+.+.++|-.++..+|+-+-.|......|
T Consensus 247 WG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~p 294 (336)
T TIGR03118 247 WGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHP 294 (336)
T ss_pred ceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCe
Confidence 99997 467899999999999999988888766665544444
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.62 E-value=0.00012 Score=71.33 Aligned_cols=242 Identities=14% Similarity=0.062 Sum_probs=144.2
Q ss_pred ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952 8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH 85 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~ 85 (573)
+|........+|+.+. .+.|+.+++............ ..+..+.+.+.++.|+.+. ..+.|+.+++........+..
T Consensus 13 ~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~~~~i~i~~~~~~~~~~~~~~ 91 (289)
T cd00200 13 TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGS-SDKTIRLWDLETGECVRTLTG 91 (289)
T ss_pred EEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEc-CCCeEEEEEcCcccceEEEec
Confidence 4444433335666665 567888888755433322222 3345888987665666554 467888888876433223332
Q ss_pred CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952 86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 164 (573)
Q Consensus 86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~ 164 (573)
....+..+++... +.++++....+.|.+.++. +.....+......+..++++|.+.+|+... ....|...++....
T Consensus 92 ~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~~~~i~i~d~~~~~ 168 (289)
T cd00200 92 HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS--QDGTIKLWDLRTGK 168 (289)
T ss_pred cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc--CCCcEEEEEccccc
Confidence 3346777877764 5666666667889999987 333333333444588999999755555544 24567777776333
Q ss_pred cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceE
Q psy952 165 FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSIN 243 (573)
Q Consensus 165 ~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~ 243 (573)
....+ ...-.....+++.+.+..|+.+.. .+.|...++............ ...+..+++.. +.++++-...+.|.
T Consensus 169 ~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~i~ 244 (289)
T cd00200 169 CVATL--TGHTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGH-ENGVNSVAFSPDGYLLASGSEDGTIR 244 (289)
T ss_pred cceeE--ecCccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhc-CCceEEEEEcCCCcEEEEEcCCCcEE
Confidence 22222 222235678898876667777665 778888888754333222221 23556777754 55666655577787
Q ss_pred EEeccCCcceEEEc
Q psy952 244 RADKFNGRDYRVLR 257 (573)
Q Consensus 244 ~~~~~~g~~~~~l~ 257 (573)
..+..++.....+.
T Consensus 245 i~~~~~~~~~~~~~ 258 (289)
T cd00200 245 VWDLRTGECVQTLS 258 (289)
T ss_pred EEEcCCceeEEEcc
Confidence 77765555555444
No 58
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.56 E-value=7.7e-06 Score=81.53 Aligned_cols=154 Identities=21% Similarity=0.316 Sum_probs=99.2
Q ss_pred CCcceEEEEEEcCC-----CEEEEEECCCCeEEEEEcCCCcceEEEcCC-------------------CCCcceeEEee-
Q psy952 43 DLLNVVAMDFHYKE-----NRFYFADVAAKTIYRSRVGSTEKERVIRHD-------------------SHGLEGLAVDW- 97 (573)
Q Consensus 43 ~~~~~~~v~~d~~~-----~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-------------------~~~p~glavD~- 97 (573)
.......|++|... +.+|++|.....|.++++.......+.... .....|||+.+
T Consensus 59 ~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~ 138 (287)
T PF03022_consen 59 PDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPI 138 (287)
T ss_dssp TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TT
T ss_pred cccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCC
Confidence 44567888899855 589999999888999998764333232211 12356677765
Q ss_pred --cCCcEEEEeCCCCeEEEEEcC----CCc---------eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952 98 --VGRKLYWLDRHSKQLDVAELD----GTN---------RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG 162 (573)
Q Consensus 98 --~~~~LY~td~~~~~I~~~~ld----g~~---------~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG 162 (573)
.++.|||.-....+++++... ... .+.+........|+++|+ +|.||+++.. ...|.+.+.++
T Consensus 139 ~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~-~G~ly~~~~~-~~aI~~w~~~~ 216 (287)
T PF03022_consen 139 SPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDP-NGNLYFTDVE-QNAIGCWDPDG 216 (287)
T ss_dssp STTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEET-TTEEEEEECC-CTEEEEEETTT
T ss_pred CCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECC-CCcEEEecCC-CCeEEEEeCCC
Confidence 335799998777788887642 211 112222224568999999 9999999975 67899999998
Q ss_pred ----CCcEEEEecCCCCCCCceEEEec-cCCeEEEEeCCCC
Q psy952 163 ----SNFTRILTHEDDIAWPNALTLDY-FTERLYWADAHLD 198 (573)
Q Consensus 163 ----~~~~~l~~~~~~l~~P~glaiD~-~~~~LYw~D~~~~ 198 (573)
.+..+|+.....|.||.+|+|+. .++.||+......
T Consensus 217 ~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snrl~ 257 (287)
T PF03022_consen 217 PYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNRLQ 257 (287)
T ss_dssp SB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S--
T ss_pred CcCccchheeEEcCceeeccceeeeccccCceEEEEECcch
Confidence 45566665344499999999994 2689999875443
No 59
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.52 E-value=6.8e-08 Score=62.06 Aligned_cols=32 Identities=59% Similarity=1.265 Sum_probs=29.6
Q ss_pred CCCCCceecCCCcccCCCcccCCCCCCCCCCCC
Q psy952 410 CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442 (573)
Q Consensus 410 C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE 442 (573)
|... +|+|.++.|||..++||+++||.|+|||
T Consensus 2 C~~~-~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPG-EFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCC-eEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 4555 8999999999999999999999999998
No 60
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.47 E-value=1.6e-07 Score=83.92 Aligned_cols=79 Identities=34% Similarity=0.539 Sum_probs=60.0
Q ss_pred CCCcCCCCCCCccc-cCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcccccCCCCCCCcCCCceee
Q psy952 454 KGWERCPGKTNYRC-IPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKC 532 (573)
Q Consensus 454 ~~~~~C~~~~~~~c-~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~~~dC~dg~~~de~~~~C~~~~~C~~~~f~C 532 (573)
.+.|.|.. +..- |+..++.|+.-||+|||||+ + ..-|..+.|.|
T Consensus 35 ~~~f~Cl~--~~~~~I~~~~iNDdyCDC~DGSDEP---------G------------------------TsAC~~~~FyC 79 (176)
T PF12999_consen 35 NGKFTCLD--GSKIVIPFSQINDDYCDCPDGSDEP---------G------------------------TSACSNGKFYC 79 (176)
T ss_pred CCceEecC--CCCceecHHHccCcceeCCCCCCcc---------c------------------------cccCcCceEee
Confidence 45688875 2233 78888999999999988882 1 12345568999
Q ss_pred CCCC---ceecCCcCcCCCCC---CCCCCCCCCCCCCCCCCC
Q psy952 533 ANTN---ICVEPYWLCDGDND---CGDMSDEDPLHCQQRTCP 568 (573)
Q Consensus 533 ~~~~---~Ci~~~~~Cdg~~d---C~d~sDe~~~~c~~~~c~ 568 (573)
.|.+ .-||.++|=||+=| |=|||||....|++ +|.
T Consensus 80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~~~C~N-~C~ 120 (176)
T PF12999_consen 80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDESGGKCPN-TCA 120 (176)
T ss_pred ccCCCCCceeehhhhcCCcCcccccCCCCCCCCCCCcc-HHH
Confidence 8864 78999999999999 99999997667875 353
No 61
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.47 E-value=0.00015 Score=77.19 Aligned_cols=223 Identities=12% Similarity=0.099 Sum_probs=139.7
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+..+.+|.+...+......+..+.|.+.+++|+++... ...|+.+++.++..+.+.... .....+++.+.++.|
T Consensus 184 ~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~L 262 (429)
T PRK01742 184 YEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRL 262 (429)
T ss_pred EEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEE
Confidence 46777788887765544444457789999999999887543 347999999876554443221 223457787778888
Q ss_pred EEEeCCCC--eEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDRHSK--QLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~~~~--~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++-...+ .|+++++++...+.+..........++.|....|+++.. .....|++++.++...+.+. ... .
T Consensus 263 a~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~--~~~----~ 336 (429)
T PRK01742 263 AFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVG--GRG----Y 336 (429)
T ss_pred EEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEec--CCC----C
Confidence 88753333 578888887766666544444667889998777777642 33568999888877654432 221 2
Q ss_pred eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCC-CCceEEEeccCCcceEEEc
Q psy952 180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWN-TKSINRADKFNGRDYRVLR 257 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~-~~~I~~~~~~~g~~~~~l~ 257 (573)
.+++.++++.|+++.. ..|..+++.+...+.+.... .......+..+..|+++... ...+..+...+|...+.|.
T Consensus 337 ~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~~lt~~~-~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 337 SAQISADGKTLVMING--DNVVKQDLTSGSTEVLSSTF-LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CccCCCCCCEEEEEcC--CCEEEEECCCCCeEEecCCC-CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 3567778888888754 55777888766555443321 11112234456667776443 2333333335676666554
No 62
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.44 E-value=1.9e-07 Score=83.36 Aligned_cols=73 Identities=41% Similarity=0.645 Sum_probs=59.9
Q ss_pred ceecCCC-cc-cCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCC-CccccCCccccCCCCC---CCCCCCCCC
Q psy952 415 EFACRNG-HC-IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT-NYRCIPKWLFCDGKDD---CRDGSDELP 488 (573)
Q Consensus 415 ~f~C~~g-~c-i~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~-~~~c~~~~~~Cdg~~d---C~d~sDe~~ 488 (573)
.|+|.+| += |+.+++.|+.-||.|||||.. ...|..+.|.|.+.+ ...-||.+++-||+-| |-|||||..
T Consensus 37 ~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPG----TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~ 112 (176)
T PF12999_consen 37 KFTCLDGSKIVIPFSQINDDYCDCPDGSDEPG----TSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG 112 (176)
T ss_pred ceEecCCCCceecHHHccCcceeCCCCCCccc----cccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence 7999988 34 899999999999999999975 335888899998732 1346889999999999 999999954
Q ss_pred CCC
Q psy952 489 QNC 491 (573)
Q Consensus 489 ~~C 491 (573)
..|
T Consensus 113 ~~C 115 (176)
T PF12999_consen 113 GKC 115 (176)
T ss_pred CCC
Confidence 445
No 63
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00027 Score=74.95 Aligned_cols=224 Identities=8% Similarity=0.047 Sum_probs=136.1
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCE---EEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENR---FYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR 100 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~---ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~ 100 (573)
..|+.++.+|.+...+..........+|.+.++. +|++... ...|+.++++|+..+.+.... ......++.+.++
T Consensus 165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g~~~~p~wSPDG~ 243 (428)
T PRK01029 165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-GNQLMPTFSPRKK 243 (428)
T ss_pred ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-CCccceEECCCCC
Confidence 3788999999877665444333455678887764 3455443 458999999988776665322 2334567777788
Q ss_pred cEEEEeCC--CCeEEEE--EcCC---CceeEeccC-CCCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCC--cEEEE
Q psy952 101 KLYWLDRH--SKQLDVA--ELDG---TNRKTLKTA-IQDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSN--FTRIL 169 (573)
Q Consensus 101 ~LY~td~~--~~~I~~~--~ldg---~~~~~l~~~-~~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~--~~~l~ 169 (573)
+|.|+-.. ...|++. ++.+ ...+.+... .......++.|....|+|+.. .....|+++.+++.. .+.+.
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 88887633 3356554 4432 222333322 223456789998777777643 335679998886432 33332
Q ss_pred ecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecC--CCCceE
Q psy952 170 THEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDW--NTKSIN 243 (573)
Q Consensus 170 ~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~--~~~~I~ 243 (573)
.........++.+++++|+++... ...|+.+++++...+.+.... ......++ ++..||++-. ....|+
T Consensus 324 ---~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~ 398 (428)
T PRK01029 324 ---KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP--ENKESPSWAIDSLHLVYSAGNSNESELY 398 (428)
T ss_pred ---cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC--CCccceEECCCCCEEEEEECCCCCceEE
Confidence 222233466788889989887543 347999999988877765432 12233444 4566776532 345688
Q ss_pred EEeccCCcceE
Q psy952 244 RADKFNGRDYR 254 (573)
Q Consensus 244 ~~~~~~g~~~~ 254 (573)
.++..+++...
T Consensus 399 ~vdl~~g~~~~ 409 (428)
T PRK01029 399 LISLITKKTRK 409 (428)
T ss_pred EEECCCCCEEE
Confidence 88865554433
No 64
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.42 E-value=2.6e-05 Score=81.68 Aligned_cols=155 Identities=17% Similarity=0.211 Sum_probs=105.5
Q ss_pred EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec------c--CCCCcceEEEeCC------CceEEEE
Q psy952 82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK------T--AIQDPRGITLHPG------IGYVYFS 147 (573)
Q Consensus 82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~------~--~~~~P~~Iavdp~------~g~LYwt 147 (573)
++.++|..|.+|++.+ .++||++....++|.+++.++...+.+. . +...+.+||++|. +++||++
T Consensus 24 ~va~GL~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 24 VLLSGLNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEECCCCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 4567899999999987 4689999987789999887654433221 1 2344899999975 4678887
Q ss_pred ecC--------CcCeEEEEeccCC-----CcEEEEecC--CCCCCCceEEEeccCCeEEEE--eC---------------
Q psy952 148 SWN--------LQAYIGKIGMDGS-----NFTRILTHE--DDIAWPNALTLDYFTERLYWA--DA--------------- 195 (573)
Q Consensus 148 d~~--------~~~~I~r~~ldG~-----~~~~l~~~~--~~l~~P~glaiD~~~~~LYw~--D~--------------- 195 (573)
-.. ...+|.|+.++.. ..++|+... ...+.-..|++++ +++||++ |.
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgP-DG~LYVs~GD~g~~~~~n~~~~~~aQ 181 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGP-DGKIYYTIGEQGRNQGANFFLPNQAQ 181 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECC-CCcEEEEECCCCCCCcccccCcchhc
Confidence 421 2457999988632 234454201 1123445789986 5689996 22
Q ss_pred ---------------CCCeEEEEeCCCCc-----------EEEEEeCCccceeEEEeee-CCeEEEecCCCC
Q psy952 196 ---------------HLDYIASVDLDGKH-----------KHIVISGQKVPHVFALTLF-EDHIYWTDWNTK 240 (573)
Q Consensus 196 ---------------~~~~I~~~~~dG~~-----------~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~ 240 (573)
..++|.|++.||+. .++...+ +.+|.+|+++ .+.||.+|-+..
T Consensus 182 ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G--~RNp~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 182 HTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYG--HRNPQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred cccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEe--ccccceeEECCCCCEEEEecCCC
Confidence 13489999999962 2444445 7899999996 678999887653
No 65
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.42 E-value=1.4e-06 Score=69.57 Aligned_cols=72 Identities=19% Similarity=0.272 Sum_probs=59.0
Q ss_pred ceeEEeecCCcEEEEeCC-----------------CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC
Q psy952 91 EGLAVDWVGRKLYWLDRH-----------------SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA 153 (573)
Q Consensus 91 ~glavD~~~~~LY~td~~-----------------~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~ 153 (573)
++|+|+..++.|||||+. +|++.+.++.....++|+.+|..|+|||+++....|++++.. ..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~-~~ 79 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG-RY 79 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG-GT
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc-Cc
Confidence 368999777999999964 278999999999999999999999999999999999999965 67
Q ss_pred eEEEEeccCC
Q psy952 154 YIGKIGMDGS 163 (573)
Q Consensus 154 ~I~r~~ldG~ 163 (573)
+|.|..+.|.
T Consensus 80 Ri~rywl~Gp 89 (89)
T PF03088_consen 80 RILRYWLKGP 89 (89)
T ss_dssp EEEEEESSST
T ss_pred eEEEEEEeCC
Confidence 9999998873
No 66
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=7.6e-05 Score=79.68 Aligned_cols=185 Identities=11% Similarity=0.061 Sum_probs=121.4
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC--CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.+++.+.....+.........++|.+.+++|+++.... ..|++++++++..+.+... .......++.+.++.|
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSL 320 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEE
Confidence 368899988765544432222234678999899898864333 3699999987765554432 2344556777778888
Q ss_pred EEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++.. +...|+++++++...+.|........+.++.|...+||++... ....|+++++++...+.+. .... ..
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt--~~~~--d~ 396 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT--STRL--DE 396 (448)
T ss_pred EEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc--CCCC--CC
Confidence 88753 3357999999866655553222234456889988899888643 2347899999887665554 2222 12
Q ss_pred eEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEEE
Q psy952 180 ALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIVI 214 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l~ 214 (573)
..++.+.++.|+++.... ..|+.++.+|...+.+.
T Consensus 397 ~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~ 433 (448)
T PRK04792 397 SPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKARLP 433 (448)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCceEECc
Confidence 336777888888876543 35888899988776654
No 67
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=8.4e-05 Score=79.23 Aligned_cols=185 Identities=18% Similarity=0.100 Sum_probs=123.5
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|+.+++.+.....+........+.+|.+.+++|+++-.. ...|+.++++++....+.. ........++.+.++.|
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQI 304 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEE
Confidence 57888898776554443323345577899888888776433 3579999998876655443 22234456777777878
Q ss_pred EEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCc
Q psy952 103 YWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 103 Y~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~ 179 (573)
+++... ...|++++++|...+.+......-...++.|..++|+++... ....|...+++|...+.+. .. ....
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt--~~--~~~~ 380 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT--SG--FLVE 380 (435)
T ss_pred EEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc--CC--CCCC
Confidence 776532 347999999987766665332233456788988888887632 2357888898887765544 22 1345
Q ss_pred eEEEeccCCeEEEEeCCC-----CeEEEEeCCCCcEEEEE
Q psy952 180 ALTLDYFTERLYWADAHL-----DYIASVDLDGKHKHIVI 214 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~-----~~I~~~~~dG~~~~~l~ 214 (573)
.+++.+.++.||++-... ..|+.++++|...+.+.
T Consensus 381 ~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 381 GPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 678888888888864422 46999999988776554
No 68
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.35 E-value=1.1e-06 Score=60.44 Aligned_cols=38 Identities=39% Similarity=0.817 Sum_probs=35.7
Q ss_pred CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952 172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
...+..|+||++|+.+++|||+|.....|++++++|+.
T Consensus 5 ~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 5 SEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred ECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 46899999999999999999999999999999999975
No 69
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.32 E-value=0.00057 Score=66.85 Aligned_cols=207 Identities=11% Similarity=0.037 Sum_probs=131.6
Q ss_pred CEEEEEe--cccEEEEEcC-CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEc----------CCCc-----
Q psy952 17 PWLIFSN--KYYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV----------GSTE----- 78 (573)
Q Consensus 17 ~~l~~s~--~~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~----------~g~~----- 78 (573)
-.|.++. .+++..+.++ .....+....+..+.||+.. .++||++-.. .|+++.. .+..
T Consensus 18 ~Sla~sTYQagkL~~ig~~~~g~l~~~~r~F~r~MGl~~~--~~~l~~~t~~--qiw~f~~~~n~l~~~~~~~~~D~~yv 93 (335)
T TIGR03032 18 LSLAVTTYQAGKLFFIGLQPNGELDVFERTFPRPMGLAVS--PQSLTLGTRY--QLWRFANVDNLLPAGQTHPGYDRLYV 93 (335)
T ss_pred eEEEEEeeecceEEEEEeCCCCcEEEEeeccCccceeeee--CCeEEEEEcc--eeEEcccccccccccccCCCCCeEEe
Confidence 3456664 3567767655 33466666778889999886 6889997643 5666611 1111
Q ss_pred ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE----eccC-----CCCcceEEEeCCCceEEEEec
Q psy952 79 KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT----LKTA-----IQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 79 ~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~----l~~~-----~~~P~~Iavdp~~g~LYwtd~ 149 (573)
++....++--....||+ ..+.|++.++.-.-+-.++..-+.+.. +++. --+-+|||+.. ..--|+|-.
T Consensus 94 Pr~~~~TGdidiHdia~--~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~~-g~p~yVTa~ 170 (335)
T TIGR03032 94 PRASYVTGDIDAHDLAL--GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALDD-GEPRYVTAL 170 (335)
T ss_pred eeeeeeccCcchhheee--cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeecceeeeC-CeEEEEEEe
Confidence 11112233345667777 567888888777777777666555432 3332 23478999975 556777764
Q ss_pred CCc--CeEEEEec-cCC------CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952 150 NLQ--AYIGKIGM-DGS------NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP 220 (573)
Q Consensus 150 ~~~--~~I~r~~l-dG~------~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~ 220 (573)
+.. +.-+|-.. +|. .-++++ +++..|.+--.. +++||+.|++++.|.+++++.+..+.+..- -.
T Consensus 171 ~~sD~~~gWR~~~~~gG~vidv~s~evl~---~GLsmPhSPRWh--dgrLwvldsgtGev~~vD~~~G~~e~Va~v--pG 243 (335)
T TIGR03032 171 SQSDVADGWREGRRDGGCVIDIPSGEVVA---SGLSMPHSPRWY--QGKLWLLNSGRGELGYVDPQAGKFQPVAFL--PG 243 (335)
T ss_pred eccCCcccccccccCCeEEEEeCCCCEEE---cCccCCcCCcEe--CCeEEEEECCCCEEEEEcCCCCcEEEEEEC--CC
Confidence 421 22222221 111 123343 678888887776 899999999999999999985555555543 34
Q ss_pred eeEEEeeeCCeEEEecC
Q psy952 221 HVFALTLFEDHIYWTDW 237 (573)
Q Consensus 221 ~p~~ia~~~~~lywtd~ 237 (573)
.|.||++.++.+|++-.
T Consensus 244 ~~rGL~f~G~llvVgmS 260 (335)
T TIGR03032 244 FTRGLAFAGDFAFVGLS 260 (335)
T ss_pred CCcccceeCCEEEEEec
Confidence 89999999888888744
No 70
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.29 E-value=0.00016 Score=77.05 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=124.7
Q ss_pred EEEEEe----cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952 18 WLIFSN----KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLE 91 (573)
Q Consensus 18 ~l~~s~----~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~ 91 (573)
.|+|.. ...|+++++.+.....+........+++|.+.+++|+++-.. ...|+.++++++....+.. ......
T Consensus 217 ~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~ 295 (433)
T PRK04922 217 KLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDT 295 (433)
T ss_pred EEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCcc
Confidence 455543 246888998766554443222233467899988888876432 3479999998776554433 222334
Q ss_pred eeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEE
Q psy952 92 GLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRI 168 (573)
Q Consensus 92 glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l 168 (573)
..++.+.++.|+++... ...|+++++++...+.+.........++++|...+|+++... ....|+..++++...+.+
T Consensus 296 ~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~L 375 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTL 375 (433)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEEC
Confidence 56777777888876532 346999998876655554332335578999988899887632 234788889877665544
Q ss_pred EecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEEEe
Q psy952 169 LTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIVIS 215 (573)
Q Consensus 169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l~~ 215 (573)
. ... .....++.+.+..|+++... ...|+.++++|...+.+..
T Consensus 376 t--~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 376 T--PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred C--CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 3 221 23355778778888877543 4579999999877666543
No 71
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.29 E-value=3e-06 Score=67.70 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=58.2
Q ss_pred ceEEEeCCCceEEEEecCC----------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952 133 RGITLHPGIGYVYFSSWNL----------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 133 ~~Iavdp~~g~LYwtd~~~----------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~ 196 (573)
.+|+|++..|.|||||.+. .+++.+.++.....+++. ++|..|||+++.+++..|++++..
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~---~~L~fpNGVals~d~~~vlv~Et~ 77 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLL---DGLYFPNGVALSPDESFVLVAETG 77 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEE---EEESSEEEEEE-TTSSEEEEEEGG
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEeh---hCCCccCeEEEcCCCCEEEEEecc
Confidence 4789999779999999742 358999999888777777 789999999999999999999999
Q ss_pred CCeEEEEeCCC
Q psy952 197 LDYIASVDLDG 207 (573)
Q Consensus 197 ~~~I~~~~~dG 207 (573)
..+|.++-+.|
T Consensus 78 ~~Ri~rywl~G 88 (89)
T PF03088_consen 78 RYRILRYWLKG 88 (89)
T ss_dssp GTEEEEEESSS
T ss_pred CceEEEEEEeC
Confidence 99999998887
No 72
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=98.29 E-value=1.9e-06 Score=59.15 Aligned_cols=41 Identities=41% Similarity=0.771 Sum_probs=36.9
Q ss_pred EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952 81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~ 121 (573)
+++..++..|.|||+||.+++|||+|...+.|.+++++|..
T Consensus 2 ~~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~~ 42 (43)
T smart00135 2 TLLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGTN 42 (43)
T ss_pred EEEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCCC
Confidence 35556789999999999999999999999999999999875
No 73
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.25 E-value=0.00031 Score=74.08 Aligned_cols=189 Identities=9% Similarity=-0.007 Sum_probs=122.9
Q ss_pred CCEEEEEECC---CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc-EEEEeCC--CCeEEEEEcCCCceeEeccCC
Q psy952 56 ENRFYFADVA---AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK-LYWLDRH--SKQLDVAELDGTNRKTLKTAI 129 (573)
Q Consensus 56 ~~~ly~~d~~---~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~-LY~td~~--~~~I~~~~ldg~~~~~l~~~~ 129 (573)
+..+|++... ...|+.++.+|.+.+++...+ ......+.+.+++ +|++... ...|++.++.+..++.|...-
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~--~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~ 232 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGG--LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ 232 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCC--CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC
Confidence 6788888732 458999999999877666543 2233445555664 7776543 468999999887777766422
Q ss_pred CCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCC
Q psy952 130 QDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLD 206 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~d 206 (573)
......++.|....|.++.. .....|+.+++++...+.|. .... .-....+.+++.+||++.... ..|++++++
T Consensus 233 g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT--~~~~-~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~ 309 (419)
T PRK04043 233 GMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT--NYPG-IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLN 309 (419)
T ss_pred CcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcc--cCCC-ccCccEECCCCCEEEEEECCCCCceEEEEECC
Confidence 22334568887777877653 23578999999888766654 2211 112336778888999886543 379999999
Q ss_pred CCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--------CceEEEeccCCc
Q psy952 207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--------KSINRADKFNGR 251 (573)
Q Consensus 207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--------~~I~~~~~~~g~ 251 (573)
|+..+.+.... ...+ .+..++++|.++-... ..|+.++..+|.
T Consensus 310 ~g~~~rlt~~g-~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 310 SGSVEQVVFHG-KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CCCeEeCccCC-CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 88875555432 2233 5666777776664332 367777765554
No 74
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.21 E-value=0.0015 Score=63.61 Aligned_cols=217 Identities=15% Similarity=0.075 Sum_probs=126.1
Q ss_pred EEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952 18 WLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV 95 (573)
Q Consensus 18 ~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav 95 (573)
+|+.+. ...|+.+++..... ..+......+..+.+.+. +.++++....+.|..+++........+......+..+++
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 455444 56788888875332 222223335788999876 556666666788999998743333233323346788888
Q ss_pred eecCCcEEEEeCCCCeEEEEEcCCC-ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC
Q psy952 96 DWVGRKLYWLDRHSKQLDVAELDGT-NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD 174 (573)
Q Consensus 96 D~~~~~LY~td~~~~~I~~~~ldg~-~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~ 174 (573)
++.+ .++++-...+.|.+.++... ....+......+..|+++|....|+.+.. ...|...++........+ ...
T Consensus 144 ~~~~-~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~--~~~ 218 (289)
T cd00200 144 SPDG-TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTL--RGH 218 (289)
T ss_pred cCcC-CEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC--CCcEEEEECCCCceecch--hhc
Confidence 8764 44444445678999988743 33333333346889999997667777653 566777776543222222 122
Q ss_pred CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCC-eEEEecCCCCce
Q psy952 175 IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED-HIYWTDWNTKSI 242 (573)
Q Consensus 175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~-~lywtd~~~~~I 242 (573)
-..+..+++++. +.++++....+.|...++........+... ...+.++++..+ .++++-...+.|
T Consensus 219 ~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 219 ENGVNSVAFSPD-GYLLASGSEDGTIRVWDLRTGECVQTLSGH-TNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred CCceEEEEEcCC-CcEEEEEcCCCcEEEEEcCCceeEEEcccc-CCcEEEEEECCCCCEEEEecCCCeE
Confidence 235678888865 666666656788888887743332222221 234566776542 344443333333
No 75
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.21 E-value=0.00016 Score=69.69 Aligned_cols=167 Identities=14% Similarity=0.192 Sum_probs=112.1
Q ss_pred ccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE------E-Ec---CCCCCccee
Q psy952 25 YYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER------V-IR---HDSHGLEGL 93 (573)
Q Consensus 25 ~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~------i-~~---~~~~~p~gl 93 (573)
-.|..+++.|.-. ++++.+++.|.+|+|- .++..-++|...++++.+.++-..... + +. .....-+||
T Consensus 108 ~~iVElt~~GdlirtiPL~g~~DpE~Ieyi-g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGl 186 (316)
T COG3204 108 AAIVELTKEGDLIRTIPLTGFSDPETIEYI-GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGL 186 (316)
T ss_pred ceEEEEecCCceEEEecccccCChhHeEEe-cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceee
Confidence 4677788888655 4667788889999987 456666677777788887776432111 1 11 113467899
Q ss_pred EEeecCCcEEEEeCCC-CeEEEEEcCCCceeE--ec--c-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 94 AVDWVGRKLYWLDRHS-KQLDVAELDGTNRKT--LK--T-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 94 avD~~~~~LY~td~~~-~~I~~~~ldg~~~~~--l~--~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
|.|+..+.||++-..+ -.|+..+..-....+ .. + -+.+..|+.+++.++.|++-.. ....+...+++|.
T Consensus 187 A~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~-ESr~l~Evd~~G~ 265 (316)
T COG3204 187 AWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD-ESRRLLEVDLSGE 265 (316)
T ss_pred ecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec-CCceEEEEecCCC
Confidence 9999999999997543 245544432211111 11 1 1345789999999999998864 3567888888888
Q ss_pred CcEEEEe------cCCCCCCCceEEEeccCCeEEEEe
Q psy952 164 NFTRILT------HEDDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 164 ~~~~l~~------~~~~l~~P~glaiD~~~~~LYw~D 194 (573)
.+..+.. ...++..|.|||+| ..+.||++.
T Consensus 266 ~~~~lsL~~g~~gL~~dipqaEGiamD-d~g~lYIvS 301 (316)
T COG3204 266 VIELLSLTKGNHGLSSDIPQAEGIAMD-DDGNLYIVS 301 (316)
T ss_pred eeeeEEeccCCCCCcccCCCcceeEEC-CCCCEEEEe
Confidence 6555432 24567889999999 688899875
No 76
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.17 E-value=0.00051 Score=72.76 Aligned_cols=191 Identities=13% Similarity=0.053 Sum_probs=122.3
Q ss_pred EEEEEec----ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcc
Q psy952 18 WLIFSNK----YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLE 91 (573)
Q Consensus 18 ~l~~s~~----~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~ 91 (573)
+|+|+.. ..|+++++.+.....+........+++|.+.++.||++... ...|+.+++++...+.+.... ....
T Consensus 203 ~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~~~~ 281 (417)
T TIGR02800 203 KLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGP-GIDT 281 (417)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCC-CCCC
Confidence 4555432 46888888766544433322334568899888889887543 347999999876555443322 2223
Q ss_pred eeEEeecCCcEEEEeC--CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEE
Q psy952 92 GLAVDWVGRKLYWLDR--HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRI 168 (573)
Q Consensus 92 glavD~~~~~LY~td~--~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l 168 (573)
..++.+.++.|+++.. ....|+++++++...+.+.........++++|...+|+++.... ...|..+++++...+.+
T Consensus 282 ~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVL 361 (417)
T ss_pred CEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEc
Confidence 4566666778877653 23479999998776655554445567788999888899987432 34788888887655544
Q ss_pred EecCCCCCCCceEEEeccCCeEEEEeCCC--CeEEEEeCCCCcEEEE
Q psy952 169 LTHEDDIAWPNALTLDYFTERLYWADAHL--DYIASVDLDGKHKHIV 213 (573)
Q Consensus 169 ~~~~~~l~~P~glaiD~~~~~LYw~D~~~--~~I~~~~~dG~~~~~l 213 (573)
. ... .....++.+.++.|+++.... ..++.++.+|...+.+
T Consensus 362 ~--~~~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 362 T--DTG--LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred c--CCC--CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeEC
Confidence 4 221 223446777788898876644 3577777777665444
No 77
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.15 E-value=0.001 Score=70.79 Aligned_cols=192 Identities=11% Similarity=0.052 Sum_probs=122.8
Q ss_pred CCEEEEEECC----CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC--CCCeEEEEEcCCCceeEeccCC
Q psy952 56 ENRFYFADVA----AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR--HSKQLDVAELDGTNRKTLKTAI 129 (573)
Q Consensus 56 ~~~ly~~d~~----~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~--~~~~I~~~~ldg~~~~~l~~~~ 129 (573)
+..+|++... ...|+.++.+|.....+.... ......++.+.++.|.|+.. ....|++.++++...+.+....
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~-~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCC-CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC
Confidence 5556666532 237999999998877665433 45567788888888877642 3457999999877666555322
Q ss_pred CCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCC
Q psy952 130 QDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLD 206 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~d 206 (573)
.....++++|....|+++... ....|+..++++...+.+. ..-......++.+++++|+++-.. ...|+.++++
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt---~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~ 319 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVT---DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNIN 319 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEcc---CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECC
Confidence 334568899988889987532 2457999999877665554 222234567888888888665432 3479999999
Q ss_pred CCcEEEEEeCCccceeEEEeeeCCeEEEecCC--CCceEEEeccCCc
Q psy952 207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADKFNGR 251 (573)
Q Consensus 207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~~~I~~~~~~~g~ 251 (573)
+...+.+...........+..++.+|+++... ...|+.++..+|.
T Consensus 320 ~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 320 GGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 366 (429)
T ss_pred CCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 87766654432111112233456677665433 2357777765554
No 78
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.14 E-value=0.00065 Score=72.19 Aligned_cols=193 Identities=11% Similarity=0.046 Sum_probs=120.4
Q ss_pred CCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCCCCc
Q psy952 56 ENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAIQDP 132 (573)
Q Consensus 56 ~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~~~P 132 (573)
+.-+|++... ...|+.++.+|...+.+.... ......++.+.++.|+++... ...|++.++.+...+.+.......
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~ 242 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSN 242 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCc
Confidence 4455665432 357899999887766665433 344566777778888877643 346999999877665554322234
Q ss_pred ceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCc
Q psy952 133 RGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKH 209 (573)
Q Consensus 133 ~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~ 209 (573)
...++.|....|+++- ......|+++++++...+.+. ..-......++.+++.+|+++.. +...|+.+++++..
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLT---QSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECC---CCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 5788999888888763 233568999999887765554 21122345678888888887643 34478899988766
Q ss_pred EEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcc
Q psy952 210 KHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRD 252 (573)
Q Consensus 210 ~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~ 252 (573)
.+.+...........+..++.+|+++.... ..|+..+..++..
T Consensus 320 ~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 320 AQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred eEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 555443211111223444677787765433 3577777655543
No 79
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.13 E-value=0.0009 Score=71.24 Aligned_cols=192 Identities=12% Similarity=0.072 Sum_probs=120.3
Q ss_pred CCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccC
Q psy952 56 ENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTA 128 (573)
Q Consensus 56 ~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~ 128 (573)
+..+|++.... .+|+.++.+|.....+...+ ......++.+.++.|+++... ...|++.++++...+.+...
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~ 241 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF 241 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC
Confidence 45666654322 25888888887766665443 344566777778888776533 35799999987766655432
Q ss_pred CCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeC
Q psy952 129 IQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDL 205 (573)
Q Consensus 129 ~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~ 205 (573)
-......++.|...+|+++-.. ....|++.++++...+.+. ..-......++.+++++||++... ...|+.+++
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~ 318 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVT---NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNV 318 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcc---cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEEC
Confidence 2233467889987788876432 3468999999887766554 222223456777788888877543 347999998
Q ss_pred CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCc
Q psy952 206 DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGR 251 (573)
Q Consensus 206 dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~ 251 (573)
++...+.+...........+..++++|+++.... ..|+.++..+|.
T Consensus 319 ~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 319 NGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 8776655543221122223445677888875433 247777765554
No 80
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.12 E-value=0.00028 Score=68.40 Aligned_cols=182 Identities=11% Similarity=0.105 Sum_probs=111.6
Q ss_pred EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-----CCceeEec--c------CCCCcceEEEeCCCc------
Q psy952 82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-----GTNRKTLK--T------AIQDPRGITLHPGIG------ 142 (573)
Q Consensus 82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-----g~~~~~l~--~------~~~~P~~Iavdp~~g------ 142 (573)
.+...+..|.||++.+ ++.++++|..++.....+.+ |.....++ . ....|.||++....+
T Consensus 17 ~tDp~L~N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 17 IVDPGLRNAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred ccCccccccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 3445688999999987 56888899989888888877 43322222 1 234699999985443
Q ss_pred -------eEEEEecCCcCeEEEEe--ccCC---CcEEEEecCCCCCCCceEEEecc--CCeEEEEeCCCCeEEEEeCCCC
Q psy952 143 -------YVYFSSWNLQAYIGKIG--MDGS---NFTRILTHEDDIAWPNALTLDYF--TERLYWADAHLDYIASVDLDGK 208 (573)
Q Consensus 143 -------~LYwtd~~~~~~I~r~~--ldG~---~~~~l~~~~~~l~~P~glaiD~~--~~~LYw~D~~~~~I~~~~~dG~ 208 (573)
+||.|+.+ .|.--. ++-. ...+++........-.||||-.. ..+||-+|...++|.+++-.
T Consensus 96 g~~~~a~Fif~tEdG---TisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-- 170 (336)
T TIGR03118 96 GITGPSRFLFVTEDG---TLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-- 170 (336)
T ss_pred CcccceeEEEEeCCc---eEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc--
Confidence 36666533 332222 2222 11223311112333468888744 68999999999999998543
Q ss_pred cEEEEEeCC----c---cceeEEEeeeCCeEEEecCCC-------------CceEEEeccCCcceEEEcc--cCCCceee
Q psy952 209 HKHIVISGQ----K---VPHVFALTLFEDHIYWTDWNT-------------KSINRADKFNGRDYRVLRN--TTHRPYDI 266 (573)
Q Consensus 209 ~~~~l~~~~----~---~~~p~~ia~~~~~lywtd~~~-------------~~I~~~~~~~g~~~~~l~~--~~~~p~~i 266 (573)
..++.+.+. . -..|++|...+++||+|=... +.|-+++ .+|..++.+.. .+..|.+|
T Consensus 171 f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd-~~G~l~~r~as~g~LNaPWG~ 249 (336)
T TIGR03118 171 FRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFT-LNGQLLRRVASSGRLNAPWGL 249 (336)
T ss_pred cccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEc-CCCcEEEEeccCCcccCCcee
Confidence 332222211 0 236899999999999983322 3455554 46666665533 37789998
Q ss_pred eeee
Q psy952 267 HVYH 270 (573)
Q Consensus 267 ~v~~ 270 (573)
++-.
T Consensus 250 a~AP 253 (336)
T TIGR03118 250 AIAP 253 (336)
T ss_pred eeCh
Confidence 8743
No 81
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.11 E-value=0.0015 Score=69.36 Aligned_cols=188 Identities=9% Similarity=0.040 Sum_probs=119.3
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC--CCeEEEE--EcCC---CcceEEEcCCCCCcceeEEee
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA--AKTIYRS--RVGS---TEKERVIRHDSHGLEGLAVDW 97 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~--~~~I~~~--~~~g---~~~~~i~~~~~~~p~glavD~ 97 (573)
..|+.+++++.....+...-....+.+|.+.+++|.|+-.. ...|+.. ++.+ +....+...........++.+
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP 290 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP 290 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECC
Confidence 47999999877655554333344567899989898887532 2356654 4432 233334433223334567877
Q ss_pred cCCcEEEEeCC--CCeEEEEEcCC--CceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecC
Q psy952 98 VGRKLYWLDRH--SKQLDVAELDG--TNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHE 172 (573)
Q Consensus 98 ~~~~LY~td~~--~~~I~~~~ldg--~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~ 172 (573)
.++.|+|+... ...|+++++++ ...+.+..........+..|...+|+++... ....|++.++++...+.+. .
T Consensus 291 DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~ 368 (428)
T PRK01029 291 DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT--T 368 (428)
T ss_pred CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--C
Confidence 78888776532 34788888864 3233333333344677899988888887532 2457999999888776665 2
Q ss_pred CCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCCCCcEEEEEe
Q psy952 173 DDIAWPNALTLDYFTERLYWADA--HLDYIASVDLDGKHKHIVIS 215 (573)
Q Consensus 173 ~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~dG~~~~~l~~ 215 (573)
. .......++.+.+..||++.. +...|+.++++|...+.+..
T Consensus 369 ~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 369 S-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred C-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 2 223456778877888887644 34579999999877766654
No 82
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.99 E-value=0.0022 Score=65.41 Aligned_cols=193 Identities=20% Similarity=0.212 Sum_probs=100.1
Q ss_pred CCCEEEEE-e-cccEEEEEcCCCceeecccCCcceEEEEEEc--CCCE---EEEEECCC--Ce--EEEEEcCCCcceEE-
Q psy952 15 IKPWLIFS-N-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHY--KENR---FYFADVAA--KT--IYRSRVGSTEKERV- 82 (573)
Q Consensus 15 ~~~~l~~s-~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~--~~~~---ly~~d~~~--~~--I~~~~~~g~~~~~i- 82 (573)
+...|+++ + ...++.++|+|..+..+..+--+-+.|.|+. .+++ +..++... ++ |++++.+....+.+
T Consensus 66 p~kSlIigTdK~~GL~VYdL~Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~ 145 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLDGKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVT 145 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETTS-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-C
T ss_pred cccceEEEEeCCCCEEEEcCCCcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcC
Confidence 33444444 3 4679999999987655432222222333321 2222 24445432 33 45555432222222
Q ss_pred -----EcCCCCCcceeEEee--cCCcEEEE-eCCCCeEEEEEcC----CCceeEec---cCCCCcceEEEeCCCceEEEE
Q psy952 83 -----IRHDSHGLEGLAVDW--VGRKLYWL-DRHSKQLDVAELD----GTNRKTLK---TAIQDPRGITLHPGIGYVYFS 147 (573)
Q Consensus 83 -----~~~~~~~p~glavD~--~~~~LY~t-d~~~~~I~~~~ld----g~~~~~l~---~~~~~P~~Iavdp~~g~LYwt 147 (573)
+...+..|.||++-. ..+.+|.. ....+.++...|. |.....++ .....|.|+++|...|+||+.
T Consensus 146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LYvg 225 (381)
T PF02333_consen 146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLYVG 225 (381)
T ss_dssp BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEEEE
T ss_pred CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEEEe
Confidence 223456788999853 45666654 3344677665552 33222333 233579999999999999999
Q ss_pred ecCCcCeEEEEecc---CCCcEEEEe-cCCCC-CCCceEEEecc---CCeEEEEeCCCCeEEEEeCCCCc
Q psy952 148 SWNLQAYIGKIGMD---GSNFTRILT-HEDDI-AWPNALTLDYF---TERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 148 d~~~~~~I~r~~ld---G~~~~~l~~-~~~~l-~~P~glaiD~~---~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
+ ....|++...+ +..++.+.. ....| .-..||+|-+. .++|.+++.+.+....++..+.+
T Consensus 226 E--E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~ 293 (381)
T PF02333_consen 226 E--EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPN 293 (381)
T ss_dssp E--TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT-
T ss_pred c--CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCC
Confidence 9 35689999887 333443321 01223 23468888532 35677777777776666666543
No 83
>KOG4499|consensus
Probab=97.96 E-value=0.003 Score=58.84 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=79.4
Q ss_pred EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-----CCCcEEEEec----CCCCCCCceEEEecc
Q psy952 116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-----GSNFTRILTH----EDDIAWPNALTLDYF 186 (573)
Q Consensus 116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-----G~~~~~l~~~----~~~l~~P~glaiD~~ 186 (573)
.+-|..++.+...+.-|+||+-|.....+|++|. .+..|...+.| -+++++|+.. ...-..|.|++|| .
T Consensus 144 ~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs-ln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID-~ 221 (310)
T KOG4499|consen 144 WLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS-LNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID-T 221 (310)
T ss_pred eccCCCceeeehhccCCccccccccCcEEEEEcc-CceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc-c
Confidence 3445555566667777999999999999999995 35667555533 2456676642 1234568999999 5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeC---CeEEEec
Q psy952 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFE---DHIYWTD 236 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~---~~lywtd 236 (573)
++.||+|-+..++|.++++....+-.-+.-. .++..+.++-+ +.+|+|-
T Consensus 222 eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 222 EGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecCCCccEEEEEe
Confidence 9999999999999999998755542222211 34455666543 3467764
No 84
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.95 E-value=0.0015 Score=67.11 Aligned_cols=160 Identities=15% Similarity=0.096 Sum_probs=100.4
Q ss_pred CCCcceeEEeecCCcEEEEeCCC-------------CeEEEEE--------cCCCceeEeccCCCCcceEEEeCCCceEE
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRHS-------------KQLDVAE--------LDGTNRKTLKTAIQDPRGITLHPGIGYVY 145 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~~-------------~~I~~~~--------ldg~~~~~l~~~~~~P~~Iavdp~~g~LY 145 (573)
.+.-..|++++.+ +||++-... ++|.+.+ .++...++...++.+|.|++++|.+|.||
T Consensus 176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 3455679999876 999985333 3444433 44445455556889999999999999999
Q ss_pred EEecCC---cC-----eE-----------E-------EEeccCCCcEEEEe---cCCCCCCCceEEEeccC------CeE
Q psy952 146 FSSWNL---QA-----YI-----------G-------KIGMDGSNFTRILT---HEDDIAWPNALTLDYFT------ERL 190 (573)
Q Consensus 146 wtd~~~---~~-----~I-----------~-------r~~ldG~~~~~l~~---~~~~l~~P~glaiD~~~------~~L 190 (573)
.++.+. .+ .| + +..+++.....++. .......|.||++-.-+ +.|
T Consensus 255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~l 334 (399)
T COG2133 255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDL 334 (399)
T ss_pred EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcE
Confidence 999764 11 11 1 11112111111110 01122346788886222 689
Q ss_pred EEEeCCCCeEEEEeCCCCcEEE---EEeCCccceeEEEee-eCCeEEEecCC-CCceEEEec
Q psy952 191 YWADAHLDYIASVDLDGKHKHI---VISGQKVPHVFALTL-FEDHIYWTDWN-TKSINRADK 247 (573)
Q Consensus 191 Yw~D~~~~~I~~~~~dG~~~~~---l~~~~~~~~p~~ia~-~~~~lywtd~~-~~~I~~~~~ 247 (573)
|++.-+.-.+.+.+++|..+.+ ++....-.+|.+|++ .++.||+++-. +++|+|+..
T Consensus 335 fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~~~g~i~Rv~~ 396 (399)
T COG2133 335 FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQGDGRILRVSY 396 (399)
T ss_pred EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecCCCCeEEEecC
Confidence 9988777778889999974322 233211358999998 46788888665 779999863
No 85
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.88 E-value=0.0031 Score=67.06 Aligned_cols=189 Identities=13% Similarity=0.091 Sum_probs=118.9
Q ss_pred CCEEEEEECCC----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEeccCC
Q psy952 56 ENRFYFADVAA----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLKTAI 129 (573)
Q Consensus 56 ~~~ly~~d~~~----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~~~~ 129 (573)
+.-.|++.... ..|+.++.+|.....+.... .....+++.+.+++|+++... ...|++.++.+...+.+....
T Consensus 169 ~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~ 247 (429)
T PRK01742 169 TRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR 247 (429)
T ss_pred CEEEEEEEEcCCCceEEEEEECCCCCCceEeccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC
Confidence 33446665432 47888889988766554322 456778888888888887533 357999999876655554221
Q ss_pred CCcceEEEeCCCceEEEEec-CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC--CCCeEEEEeCC
Q psy952 130 QDPRGITLHPGIGYVYFSSW-NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA--HLDYIASVDLD 206 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~-~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~--~~~~I~~~~~d 206 (573)
..-..+++.|...+|+++.. .....|+..++++...+.+. ..-......++.+++.+|+++.. +.-.|+.++.+
T Consensus 248 g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt---~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 248 GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLT---SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeec---cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 22346789998788888743 22457899998877665554 22223456788888888887643 34478888888
Q ss_pred CCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcce
Q psy952 207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDY 253 (573)
Q Consensus 207 G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~ 253 (573)
+...+.+ ... .....+..++.+|+++.. ..|.+.+..+|..+
T Consensus 325 ~~~~~~l-~~~--~~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 325 GGGASLV-GGR--GYSAQISADGKTLVMING--DNVVKQDLTSGSTE 366 (429)
T ss_pred CCCeEEe-cCC--CCCccCCCCCCEEEEEcC--CCEEEEECCCCCeE
Confidence 8766554 221 111123335667766643 45666776666543
No 86
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.023 Score=54.97 Aligned_cols=217 Identities=12% Similarity=0.115 Sum_probs=120.4
Q ss_pred CCCEEEEEe-cccEEEEEcCCCceeecccC--C-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952 15 IKPWLIFSN-KYYVRNMSLDATQYSLVHQD--L-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL 90 (573)
Q Consensus 15 ~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~--~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p 90 (573)
.+.++++++ ...|+.+++.......+... . +...++ +..++.+|++|...+ +..+++.....-++ ......|
T Consensus 95 se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv--~vsGn~aYVadlddg-fLivdvsdpssP~l-agrya~~ 170 (370)
T COG5276 95 SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGV--YVSGNYAYVADLDDG-FLIVDVSDPSSPQL-AGRYALP 170 (370)
T ss_pred cccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEE--EecCCEEEEeeccCc-EEEEECCCCCCcee-eeeeccC
Confidence 345777776 35677777764432222111 1 233444 445899999998765 44455543322222 2222233
Q ss_pred ----ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC---CcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 91 ----EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ---DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 91 ----~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~---~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
+.++| .++.-|++....| +...+.......+|+.... ..+++.+. ..+.|.++.. ..+.-.+.++.
T Consensus 171 ~~d~~~v~I--SGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~sv~vs--dnr~y~vvy~--egvlivd~s~~ 243 (370)
T COG5276 171 GGDTHDVAI--SGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTYSVSVS--DNRAYLVVYD--EGVLIVDVSGP 243 (370)
T ss_pred CCCceeEEE--ecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceEEEEec--CCeeEEEEcc--cceEEEecCCC
Confidence 34566 4788999986544 5566666655566663221 23444444 4677877753 23555566666
Q ss_pred CcEEEEecCCCCCCCceE-EEeccCCeEEEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCC
Q psy952 164 NFTRILTHEDDIAWPNAL-TLDYFTERLYWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTK 240 (573)
Q Consensus 164 ~~~~l~~~~~~l~~P~gl-aiD~~~~~LYw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~ 240 (573)
...+++. .-.-..|.++ ++-..+++.|++|...+ .|-..+..+....--.... -.+..||.++++++|++|..++
T Consensus 244 ssp~~~g-syet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~-g~~a~gi~ay~~y~yiadkn~g 321 (370)
T COG5276 244 SSPTVFG-SYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA-GYQAAGIRAYGNYNYIADKNTG 321 (370)
T ss_pred CCceEee-ccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC-CccccceEEecCeeEeccCCce
Confidence 5445442 2233445444 23345899999997654 2333333332221111111 2367899999999999998877
Q ss_pred ceEE
Q psy952 241 SINR 244 (573)
Q Consensus 241 ~I~~ 244 (573)
.|.-
T Consensus 322 ~vV~ 325 (370)
T COG5276 322 AVVD 325 (370)
T ss_pred EEEe
Confidence 7643
No 87
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.74 E-value=0.032 Score=53.98 Aligned_cols=180 Identities=18% Similarity=0.176 Sum_probs=111.1
Q ss_pred CEEEEEec----ccEEEEEcCCCce--eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc
Q psy952 17 PWLIFSNK----YYVRNMSLDATQY--SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL 90 (573)
Q Consensus 17 ~~l~~s~~----~~I~~i~l~g~~~--~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p 90 (573)
..|+-+.. ..|+++++...++ ...++.--...||++- +++||..-+..+..++++.+.-....-+.-. ..-
T Consensus 56 g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EG 132 (264)
T PF05096_consen 56 GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEG 132 (264)
T ss_dssp TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS-
T ss_pred CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEEEEEecC-Ccc
Confidence 35555553 5899999986654 2334444457888887 8899999999999999999753322112211 467
Q ss_pred ceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEec-c----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952 91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLK-T----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 164 (573)
Q Consensus 91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~-~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~ 164 (573)
.||+.| +..||.+|. ..+|...++..-. .+.+. . .+..-+-|..- +|.||---|. ...|.++++.-..
T Consensus 133 WGLt~d--g~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~-td~I~~Idp~tG~ 206 (264)
T PF05096_consen 133 WGLTSD--GKRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQ-TDRIVRIDPETGK 206 (264)
T ss_dssp -EEEEC--SSCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETT-SSEEEEEETTT-B
T ss_pred eEEEcC--CCEEEEECC-ccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCC-CCeEEEEeCCCCe
Confidence 899976 778999985 5689988876432 22221 1 22233344443 6888766664 7789999987665
Q ss_pred cEEEEec--------CC-----CCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 165 FTRILTH--------ED-----DIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 165 ~~~l~~~--------~~-----~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
....+.. .. ....-||||.|+..++||++--.=.+++.+.+
T Consensus 207 V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l 260 (264)
T PF05096_consen 207 VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKL 260 (264)
T ss_dssp EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEEE
T ss_pred EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEE
Confidence 5555430 00 12234899999999999998766677777654
No 88
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=97.69 E-value=0.021 Score=53.94 Aligned_cols=240 Identities=16% Similarity=0.179 Sum_probs=124.4
Q ss_pred CCCEEEEEe--cccEEEEEcCCCceeecccCCcceEEEEEEcC--CCEEEE---EECCCCeEEEEEcCCC--cceE----
Q psy952 15 IKPWLIFSN--KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYK--ENRFYF---ADVAAKTIYRSRVGST--EKER---- 81 (573)
Q Consensus 15 ~~~~l~~s~--~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~--~~~ly~---~d~~~~~I~~~~~~g~--~~~~---- 81 (573)
|+..++++. ...+++++|+|.++..+..+--+-+.|-|+.. .+.|=+ +|.....|..+.+++. ..+.
T Consensus 65 P~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASdR~~~~i~~y~Idp~~~~L~sitD~ 144 (364)
T COG4247 65 PDKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASDRQNDKIVFYKIDPNPQYLESITDS 144 (364)
T ss_pred cCcceEEEeeccCCeEEEecCCCeeeecCCCcccccccccCcccCCeEEEEEecccccCCeEEEEEeCCCccceeeccCC
Confidence 444455544 35788999999876544332222222222211 111211 2333445555444442 2222
Q ss_pred --EEcCCCCCcceeEEee--cCCcE--EEEeCCCCeEEEEEc----CCCceeEeccCC---CCcceEEEeCCCceEEEEe
Q psy952 82 --VIRHDSHGLEGLAVDW--VGRKL--YWLDRHSKQLDVAEL----DGTNRKTLKTAI---QDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 82 --i~~~~~~~p~glavD~--~~~~L--Y~td~~~~~I~~~~l----dg~~~~~l~~~~---~~P~~Iavdp~~g~LYwtd 148 (573)
..++++..|.||++-. .++-. |+++ ..+.|..+.| +|.....++..+ ....|++.|-+.|.||+++
T Consensus 145 n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG~LYIae 223 (364)
T COG4247 145 NAPYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETGFLYIAE 223 (364)
T ss_pred CCccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccceEEEee
Confidence 2344577899999853 33333 3444 3467766665 233333344322 3478999999999999998
Q ss_pred cCCcCeEEEEecc---CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeC-CccceeEE
Q psy952 149 WNLQAYIGKIGMD---GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFA 224 (573)
Q Consensus 149 ~~~~~~I~r~~ld---G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~-~~~~~p~~ 224 (573)
..-.|++...+ |...+.|- .+..-..|+-|..+=.||+...+.+.+.. ...|.+....+.. ......-+
T Consensus 224 --EdvaiWK~~Aep~~G~~g~~id----r~~d~~~LtdDvEGltiYy~pnGkGYL~a-SSQGnNtya~y~ReG~N~YVgs 296 (364)
T COG4247 224 --EDVAIWKYEAEPNRGNTGRLID----RIKDLSYLTDDVEGLTIYYGPNGKGYLLA-SSQGNNTYAAYTREGNNDYVGS 296 (364)
T ss_pred --ccceeeecccCCCCCCccchhh----hhcCchhhcccccccEEEEcCCCcEEEEE-ecCCCceEEEEEeeCCCceEEE
Confidence 35578887765 33333322 22222456666666778887766665433 3345444433331 10111111
Q ss_pred EeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeeec
Q psy952 225 LTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHP 271 (573)
Q Consensus 225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~~ 271 (573)
..+- .++.|-.+...+|..+.-+..+...||++-|-+.
T Consensus 297 F~vt---------~n~~iDg~setDG~DV~~~~LGa~~p~G~FVaQD 334 (364)
T COG4247 297 FGVT---------NNGAIDGVSETDGADVVNVPLGANFPFGLFVAQD 334 (364)
T ss_pred Eeec---------cCCccccccccCCcceeccccCCCCcceeEEecc
Confidence 2211 1244555555566666555556677888776553
No 89
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.68 E-value=0.0024 Score=65.57 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=101.1
Q ss_pred CcceEEEEEEcCCCEEEEEECCC-------------CeEEEEEcCCC-------cceEEEcCCCCCcceeEEeecCCcEE
Q psy952 44 LLNVVAMDFHYKENRFYFADVAA-------------KTIYRSRVGST-------EKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~-------------~~I~~~~~~g~-------~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
.++-..|+|++.+ +||++--.. ++|.+++.++. ....|.+.++..|.||++++.++.||
T Consensus 176 ~H~g~~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 176 HHFGGRLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred CcCcccEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 4456689999866 999974322 56666665553 12336667889999999999999999
Q ss_pred EEeCCCCeE------EEE---------------EcCCC------ceeEecc------CCCCcceEEEeCC------CceE
Q psy952 104 WLDRHSKQL------DVA---------------ELDGT------NRKTLKT------AIQDPRGITLHPG------IGYV 144 (573)
Q Consensus 104 ~td~~~~~I------~~~---------------~ldg~------~~~~l~~------~~~~P~~Iavdp~------~g~L 144 (573)
.++.+...+ .+. +.+|. ....++. .-.-|.||++-.- ++.|
T Consensus 255 ~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~l 334 (399)
T COG2133 255 TTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDL 334 (399)
T ss_pred EEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcE
Confidence 999766222 111 01111 1111111 1122688888742 2678
Q ss_pred EEEecCCcCeEEEEeccCCCc---EEEEecCCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCC
Q psy952 145 YFSSWNLQAYIGKIGMDGSNF---TRILTHEDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDG 207 (573)
Q Consensus 145 Ywtd~~~~~~I~r~~ldG~~~---~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG 207 (573)
|++..+. ..+.+...+|..+ +.++. ...-..|.++++.+ ++-||+++.. .++|+|+.+.+
T Consensus 335 fV~~hgs-w~~~~~~~~g~~~~~~~~fl~-~d~~gR~~dV~v~~-DGallv~~D~~~g~i~Rv~~~~ 398 (399)
T COG2133 335 FVGAHGS-WPVLRLRPDGNYKVVLTGFLS-GDLGGRPRDVAVAP-DGALLVLTDQGDGRILRVSYAG 398 (399)
T ss_pred EEEeecc-eeEEEeccCCCcceEEEEEEe-cCCCCcccceEECC-CCeEEEeecCCCCeEEEecCCC
Confidence 8887553 3577788888833 33441 11225899999995 5666666555 77999998765
No 90
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.54 E-value=0.03 Score=57.27 Aligned_cols=172 Identities=15% Similarity=0.102 Sum_probs=111.7
Q ss_pred EEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee
Q psy952 18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW 97 (573)
Q Consensus 18 ~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~ 97 (573)
++.+.++...+.+...+.- .+.+..-..+.-.-+-...+.+.+.......|..++.+|+..+.+ ..+++.+..|+++.
T Consensus 334 ~ia~VSRGkaFi~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~ 411 (668)
T COG4946 334 YIALVSRGKAFIMRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSP 411 (668)
T ss_pred EEEEEecCcEEEECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcC
Confidence 3444445555555544332 222211112332233333445666666666899999988876654 45789999999998
Q ss_pred cCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCC
Q psy952 98 VGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDD 174 (573)
Q Consensus 98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~ 174 (573)
.+..+-+++ .+..|++++++....+.+- +.-.-..+++++|..++|-++-... ...|...+|+|...-.+. +.
T Consensus 412 dGK~~vvaN-dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT---T~ 487 (668)
T COG4946 412 DGKKVVVAN-DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT---TP 487 (668)
T ss_pred CCcEEEEEc-CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec---CC
Confidence 777788887 4568999999988877665 3334478888999877776664321 457889999987654444 33
Q ss_pred CCCCceEEEeccCCeEEEEeC
Q psy952 175 IAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 175 l~~P~glaiD~~~~~LYw~D~ 195 (573)
-..-.+-|+|+++..||+-..
T Consensus 488 ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 488 TAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cccccCcccCCCCcEEEEEec
Confidence 333445689999999999653
No 91
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.54 E-value=0.013 Score=60.00 Aligned_cols=194 Identities=19% Similarity=0.240 Sum_probs=102.8
Q ss_pred EEEEE---cCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEee---cCC----cEEEEeCC--CCeEEEEE
Q psy952 49 AMDFH---YKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDW---VGR----KLYWLDRH--SKQLDVAE 116 (573)
Q Consensus 49 ~v~~d---~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~---~~~----~LY~td~~--~~~I~~~~ 116 (573)
+|-++ +....|+-++.. +-++.++|+|.....+- ..+++.+.+-. +++ .+..++.. .++|.++.
T Consensus 58 AIWvnp~dp~kSlIigTdK~-~GL~VYdL~Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~ 133 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKK-GGLYVYDLDGKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFR 133 (381)
T ss_dssp EEE--SS-GGG-EEEEEETT-TEEEEEETTS-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEE
T ss_pred cEecCCCCcccceEEEEeCC-CCEEEEcCCCcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEE
Confidence 44444 334455556654 46889999998766442 23555444321 112 23455543 35666655
Q ss_pred cCCC--ceeEe-------ccCCCCcceEEE--eCCCceEEEEecCCcCeEEEEec--cCCC--cEEEEecCCCCCCCceE
Q psy952 117 LDGT--NRKTL-------KTAIQDPRGITL--HPGIGYVYFSSWNLQAYIGKIGM--DGSN--FTRILTHEDDIAWPNAL 181 (573)
Q Consensus 117 ldg~--~~~~l-------~~~~~~P~~Iav--dp~~g~LYwtd~~~~~~I~r~~l--dG~~--~~~l~~~~~~l~~P~gl 181 (573)
+++. ..+.+ .+.+..|+||++ ++..|.+|..-.+..+.++...| ++.. .-.++.....-..|.|+
T Consensus 134 id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGC 213 (381)
T PF02333_consen 134 IDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGC 213 (381)
T ss_dssp EETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEE
T ss_pred ecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEE
Confidence 5532 22222 235566999998 45567666554334455554444 3432 22233112233468899
Q ss_pred EEeccCCeEEEEeCCCCeEEEEeCC---CCcEEEEEe--CC-ccceeEEEeee-----CCeEEEecCCCCceEEEec
Q psy952 182 TLDYFTERLYWADAHLDYIASVDLD---GKHKHIVIS--GQ-KVPHVFALTLF-----EDHIYWTDWNTKSINRADK 247 (573)
Q Consensus 182 aiD~~~~~LYw~D~~~~~I~~~~~d---G~~~~~l~~--~~-~~~~p~~ia~~-----~~~lywtd~~~~~I~~~~~ 247 (573)
++|...++||+++... -|++++.+ +..++.+.. +. .....-||+++ .++|.+++.+.++....+.
T Consensus 214 VVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r 289 (381)
T PF02333_consen 214 VVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR 289 (381)
T ss_dssp EEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred EEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence 9999999999999764 68998876 344555533 21 23567899985 2579999988887666654
No 92
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.49 E-value=0.0039 Score=67.13 Aligned_cols=182 Identities=8% Similarity=-0.002 Sum_probs=104.0
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcceEEEc-CCCCCcceeEEe--ecCCc-----------------EEEEeCCCCeEEEE
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKERVIR-HDSHGLEGLAVD--WVGRK-----------------LYWLDRHSKQLDVA 115 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~-~~~~~p~glavD--~~~~~-----------------LY~td~~~~~I~~~ 115 (573)
..+||+-|..+.+|-|++++--....|+. .+.....|+.+. +.+++ |+.+....+.+.++
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvI 220 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAV 220 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEE
Confidence 67899999999999999998754444443 344566666665 23333 33333334556666
Q ss_pred EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
+.+...+..-+.-..+|+.++++|..+++|+|.... ...+..++..-....+++ .++...++-..++..|+.
T Consensus 221 D~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf------ni~~iea~vkdGK~~~V~ 294 (635)
T PRK02888 221 DAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF------NIARIEEAVKAGKFKTIG 294 (635)
T ss_pred ECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE------chHHHHHhhhCCCEEEEC
Confidence 555322211111223799999999999999996322 223333322211111222 222212222245566652
Q ss_pred eCCCCeEEEEeCCC-----CcE-EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccC
Q psy952 194 DAHLDYIASVDLDG-----KHK-HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFN 249 (573)
Q Consensus 194 D~~~~~I~~~~~dG-----~~~-~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~ 249 (573)
.++|..++... ... ..|..+ ..|.||++ ++.++|++...+..|..++...
T Consensus 295 ---gn~V~VID~~t~~~~~~~v~~yIPVG---KsPHGV~vSPDGkylyVanklS~tVSVIDv~k 352 (635)
T PRK02888 295 ---GSKVPVVDGRKAANAGSALTRYVPVP---KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRK 352 (635)
T ss_pred ---CCEEEEEECCccccCCcceEEEEECC---CCccceEECCCCCEEEEeCCCCCcEEEEEChh
Confidence 46677776543 222 223333 36777776 6789999999999998887543
No 93
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.018 Score=60.57 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=123.4
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC---CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA---KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK 101 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~---~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~ 101 (573)
..|+..+-+|.+...+.........-++-+...+|.+..... .+|+.++++.+....++... ..-...++-+.+++
T Consensus 173 ~~l~~~D~dg~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~-g~~~~P~fspDG~~ 251 (425)
T COG0823 173 YELALGDYDGYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN-GNNGAPAFSPDGSK 251 (425)
T ss_pred ceEEEEccCCcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC-CccCCccCCCCCCE
Confidence 455666666655544444333344445555566655554432 35888899887777666533 22233455556777
Q ss_pred EEEEeCCC--CeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEE-ecCCcCeEEEEeccCCCcEEEEecCCCCCCC
Q psy952 102 LYWLDRHS--KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFS-SWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178 (573)
Q Consensus 102 LY~td~~~--~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwt-d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P 178 (573)
|.++-... -.|++++++++....|......=..=.+.|...+|+++ |.+..+.|++++++|+..+.+. ......
T Consensus 252 l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT---~~~~~~ 328 (425)
T COG0823 252 LAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT---FSGGGN 328 (425)
T ss_pred EEEEECCCCCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee---ccCCCC
Confidence 77766443 47999999998866644322111133456666777666 4445779999999999876655 222222
Q ss_pred ceEEEeccCCeEEEEeCCCCe--EEEEeCCCCc-EEEEEeCCccceeEEEeeeCCe-EEEecCCCCceEEEeccCCcceE
Q psy952 179 NALTLDYFTERLYWADAHLDY--IASVDLDGKH-KHIVISGQKVPHVFALTLFEDH-IYWTDWNTKSINRADKFNGRDYR 254 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~~~--I~~~~~dG~~-~~~l~~~~~~~~p~~ia~~~~~-lywtd~~~~~I~~~~~~~g~~~~ 254 (573)
.--.+.+++.+|-+.....+. |...++.... .+.+.... ...+-..+..+.. +|.+....+.+...-..+|....
T Consensus 329 ~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~-~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~ 407 (425)
T COG0823 329 SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTY-LNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSR 407 (425)
T ss_pred cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccc-cCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEE
Confidence 233455566666665543343 5555543222 33333332 3334444444443 34444444554444344555443
No 94
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.44 E-value=0.015 Score=62.65 Aligned_cols=194 Identities=12% Similarity=0.077 Sum_probs=115.1
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC---------------------------------------
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA--------------------------------------- 66 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~--------------------------------------- 66 (573)
.+..|+.+.......+..-.+|..+++++.++.+|++..+.
T Consensus 216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 44555555433322222234788889999888888885211
Q ss_pred CeEEEEEcCC-----CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc---------eeEec---cCC
Q psy952 67 KTIYRSRVGS-----TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN---------RKTLK---TAI 129 (573)
Q Consensus 67 ~~I~~~~~~g-----~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~---------~~~l~---~~~ 129 (573)
+++..++... ......+..+ .+|.||++.+.+++||++....+.|.++++.... +.+++ .-.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 2233333222 1122223333 6999999999999999999999999999986522 12233 234
Q ss_pred CCcceEEEeCCCceEEEEecCCcCeEEEEecc-------CCCcEEEEecCCC------CCCCceEEEeccCCeEEEEeCC
Q psy952 130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-------GSNFTRILTHEDD------IAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-------G~~~~~l~~~~~~------l~~P~glaiD~~~~~LYw~D~~ 196 (573)
..|...++|+ +|+.|.|-.- .+.|.+-+++ |.....++..... +..+.|=+.++++++|+...-.
T Consensus 375 lGPLHTaFDg-~G~aytslf~-dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 375 LGPLHTAFDG-RGNAYTTLFL-DSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred CCcceEEECC-CCCEEEeEee-cceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcccc
Confidence 4699999998 5789888643 4566666655 3332233321112 2233444557777777665432
Q ss_pred C------------CeEEEEeCCCCcEEEEEeCCcccee
Q psy952 197 L------------DYIASVDLDGKHKHIVISGQKVPHV 222 (573)
Q Consensus 197 ~------------~~I~~~~~dG~~~~~l~~~~~~~~p 222 (573)
. ..-..+++.|...++|.....++.|
T Consensus 453 skdrfl~vgpl~pen~qlidIsgdkM~lv~d~p~~~EP 490 (635)
T PRK02888 453 SKDRFLPVGPLHPENDQLIDISGDKMKLVHDGPTFAEP 490 (635)
T ss_pred ccccccCCCCCCCCcceeEEccCCeeEEEecCCCCCCC
Confidence 1 1345567788888887765434555
No 95
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.43 E-value=0.021 Score=58.32 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=92.7
Q ss_pred EEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceE
Q psy952 102 LYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNAL 181 (573)
Q Consensus 102 LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~gl 181 (573)
+-+.......|.+.+.+|...+.+..++.+..++++++...++-+++ ....|+.++++..+.+.+- .+.-....++
T Consensus 374 ~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--dr~el~vididngnv~~id--kS~~~lItdf 449 (668)
T COG4946 374 DVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--DRFELWVIDIDNGNVRLID--KSEYGLITDF 449 (668)
T ss_pred eEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--CceEEEEEEecCCCeeEec--ccccceeEEE
Confidence 33444455689999999999999999999999999999777788887 4678999999988877765 3444445677
Q ss_pred EEeccCCeEEEEeC---CCCeEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEec
Q psy952 182 TLDYFTERLYWADA---HLDYIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTD 236 (573)
Q Consensus 182 aiD~~~~~LYw~D~---~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd 236 (573)
++.+...+|-++=. ....|..++++|....-+.+. ..+-++-|+ ++.+||+--
T Consensus 450 ~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 450 DWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcccCCCCcEEEEEe
Confidence 77766666644422 245788899998766554443 345566665 456788753
No 96
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.32 E-value=0.18 Score=48.85 Aligned_cols=196 Identities=13% Similarity=0.047 Sum_probs=120.6
Q ss_pred cCCcceEEEEEEcCCCEEEEEECCCC--eEEEEEcCCCcce-EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952 42 QDLLNVVAMDFHYKENRFYFADVAAK--TIYRSRVGSTEKE-RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118 (573)
Q Consensus 42 ~~~~~~~~v~~d~~~~~ly~~d~~~~--~I~~~~~~g~~~~-~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld 118 (573)
.......|+.|+ .++.||-+.-..+ +|++++++++... ..--..-..-+||++ .+++||..-...+...+.+.+
T Consensus 42 d~~aFTQGL~~~-~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~--~~d~l~qLTWk~~~~f~yd~~ 118 (264)
T PF05096_consen 42 DPTAFTQGLEFL-DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITI--LGDKLYQLTWKEGTGFVYDPN 118 (264)
T ss_dssp -TT-EEEEEEEE-ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEE--ETTEEEEEESSSSEEEEEETT
T ss_pred CCcccCccEEec-CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEE--ECCEEEEEEecCCeEEEEccc
Confidence 344456799995 3789999876544 8999999876432 222222246788888 489999999989999999987
Q ss_pred CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEE-Ee-cCCCCCCCceEEEeccCCeEEEEeC
Q psy952 119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRI-LT-HEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 119 g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l-~~-~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
.-....-++-.....||+-| ...||.+|. ..+|+..+...-.. +.+ |. ....+..-|-|.. .++.||---+
T Consensus 119 tl~~~~~~~y~~EGWGLt~d--g~~Li~SDG--S~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~--i~G~IyANVW 192 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGWGLTSD--GKRLIMSDG--SSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEY--INGKIYANVW 192 (264)
T ss_dssp TTEEEEEEE-SSS--EEEEC--SSCEEEE-S--SSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEE--ETTEEEEEET
T ss_pred cceEEEEEecCCcceEEEcC--CCEEEEECC--ccceEEECCcccceEEEEEEEECCEECCCcEeEEE--EcCEEEEEeC
Confidence 54332222223467899976 568999994 56788777653222 211 21 0111223344554 4899999999
Q ss_pred CCCeEEEEeCCCCcEEEEEeCCc--------------cceeEEEeee--CCeEEEecCCCCceEEEe
Q psy952 196 HLDYIASVDLDGKHKHIVISGQK--------------VPHVFALTLF--EDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 196 ~~~~I~~~~~dG~~~~~l~~~~~--------------~~~p~~ia~~--~~~lywtd~~~~~I~~~~ 246 (573)
..+.|.++++..+.+.-++.-.. ..-..|||.+ .+++|+|--.-..++.+.
T Consensus 193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~ 259 (264)
T PF05096_consen 193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPKLYEVK 259 (264)
T ss_dssp TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SEEEEEE
T ss_pred CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCceEEEE
Confidence 99999999998777766553100 1235799984 578999966666777664
No 97
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=97.27 E-value=0.00018 Score=46.80 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=24.3
Q ss_pred CcccccccccccCccceee-eccceeecCCCCC
Q psy952 274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNKE 305 (573)
Q Consensus 274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~~ 305 (573)
++|+|+|++.+ .+++| ||.||.|..|+++
T Consensus 6 GgC~h~C~~~~---g~~~C~C~~Gy~L~~D~~t 35 (36)
T PF14670_consen 6 GGCSHICVNTP---GSYRCSCPPGYKLAEDGRT 35 (36)
T ss_dssp GGSSSEEEEET---TSEEEE-STTEEE-TTSSS
T ss_pred CCcCCCCccCC---CceEeECCCCCEECcCCCC
Confidence 79999999998 57999 9999999998764
No 98
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.18 E-value=0.087 Score=53.75 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=97.7
Q ss_pred cCCcceEEEEEEcCCCEEEEEECCCCe------EEEEEcCC--C---cce-----EEEcC-C--C----CCcceeEEeec
Q psy952 42 QDLLNVVAMDFHYKENRFYFADVAAKT------IYRSRVGS--T---EKE-----RVIRH-D--S----HGLEGLAVDWV 98 (573)
Q Consensus 42 ~~~~~~~~v~~d~~~~~ly~~d~~~~~------I~~~~~~g--~---~~~-----~i~~~-~--~----~~p~glavD~~ 98 (573)
..++...||+|++..+. ||+=...+. ++++.+.. . ..+ .+... + + ..++||++ ..
T Consensus 17 ~~~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~ 94 (326)
T PF13449_consen 17 IPFGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PP 94 (326)
T ss_pred CccCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ec
Confidence 45667889999975554 444333333 77766654 1 111 01111 1 1 27789999 57
Q ss_pred CCcEEEEeCCC------CeEEEEEcCCCceeEe-c-cCC-------------CCcceEEEeCCCceEEEEecCC------
Q psy952 99 GRKLYWLDRHS------KQLDVAELDGTNRKTL-K-TAI-------------QDPRGITLHPGIGYVYFSSWNL------ 151 (573)
Q Consensus 99 ~~~LY~td~~~------~~I~~~~ldg~~~~~l-~-~~~-------------~~P~~Iavdp~~g~LYwtd~~~------ 151 (573)
.+.+||++... ..|.+++++|...+.+ + ..+ ....+||+.|....||.+..+.
T Consensus 95 ~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 95 DGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGP 174 (326)
T ss_pred CCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCc
Confidence 89999999988 9999999999886665 2 111 1278999999877688775431
Q ss_pred -c-------CeEEEEecc--CCCcEEEEecCC------CCCCCceEEEeccCCeEEEEeCC-------CCeEEEEeCCC
Q psy952 152 -Q-------AYIGKIGMD--GSNFTRILTHED------DIAWPNALTLDYFTERLYWADAH-------LDYIASVDLDG 207 (573)
Q Consensus 152 -~-------~~I~r~~ld--G~~~~~l~~~~~------~l~~P~glaiD~~~~~LYw~D~~-------~~~I~~~~~dG 207 (573)
. .+|.+.+.. |.....++...+ ....+..|+.- .+++||+.+.. ..+|+.+++.+
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al-~d~~lLvLER~~~~~~~~~~ri~~v~l~~ 252 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAAL-PDGRLLVLERDFSPGTGNYKRIYRVDLSD 252 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEE-CCCcEEEEEccCCCCccceEEEEEEEccc
Confidence 1 346666654 212222221122 23344444443 36778888765 23677887764
No 99
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.14 E-value=0.053 Score=53.39 Aligned_cols=177 Identities=19% Similarity=0.144 Sum_probs=102.1
Q ss_pred EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE----c------CCCceeEe------ccCCCCcceEEEeCCCceEE
Q psy952 82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE----L------DGTNRKTL------KTAIQDPRGITLHPGIGYVY 145 (573)
Q Consensus 82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~----l------dg~~~~~l------~~~~~~P~~Iavdp~~g~LY 145 (573)
+....+.+|-||++. .++||.+-. ..|+++. + .+..-+.. .++--+...||+ ..+.++
T Consensus 43 ~~~r~F~r~MGl~~~--~~~l~~~t~--~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~--~~~~l~ 116 (335)
T TIGR03032 43 VFERTFPRPMGLAVS--PQSLTLGTR--YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL--GAGRLL 116 (335)
T ss_pred EEeeccCccceeeee--CCeEEEEEc--ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee--cCCcEE
Confidence 333456789999985 688998863 4576661 1 12111111 145556788888 345666
Q ss_pred EEecCCcCeEEEEeccCCCc----EEEEe--cCCCCCCCceEEEeccCCeEEEEeCCCC---eEEEEe-CCCC------c
Q psy952 146 FSSWNLQAYIGKIGMDGSNF----TRILT--HEDDIAWPNALTLDYFTERLYWADAHLD---YIASVD-LDGK------H 209 (573)
Q Consensus 146 wtd~~~~~~I~r~~ldG~~~----~~l~~--~~~~l~~P~glaiD~~~~~LYw~D~~~~---~I~~~~-~dG~------~ 209 (573)
+.+. .-+-+-..+.+.+.. ..+++ ..++-=.=||||++ .++--|++--... .=+|-+ .+|+ .
T Consensus 117 fVNT-~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG~vidv~s 194 (335)
T TIGR03032 117 FVNT-LFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGGCVIDIPS 194 (335)
T ss_pred EEEC-cceeEEEECCCCccccccCCccccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCeEEEEeCC
Confidence 6663 234555555554432 22331 01221234899997 3444565532211 111211 1222 1
Q ss_pred EEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952 210 KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVY 269 (573)
Q Consensus 210 ~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~ 269 (573)
.++++++ +..|.+.-+++++||+.|++++.|.++++.+|+...+ ......|.||...
T Consensus 195 ~evl~~G--LsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~f~ 251 (335)
T TIGR03032 195 GEVVASG--LSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLAFA 251 (335)
T ss_pred CCEEEcC--ccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCccccee
Confidence 2445555 7788999999999999999999999999777865554 3334567776654
No 100
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.10 E-value=0.0011 Score=40.74 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.8
Q ss_pred CCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952 175 IAWPNALTLDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 175 l~~P~glaiD~~~~~LYw~D~~~~~I~~~ 203 (573)
+..|.||+++ .++.||++|.++++|..+
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4679999999 899999999999998764
No 101
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.04 E-value=0.33 Score=46.60 Aligned_cols=180 Identities=14% Similarity=0.148 Sum_probs=100.3
Q ss_pred CCEEEEEECCCCeEEEEEcC-CCcceEEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE-cCCCceeEe-cc----
Q psy952 56 ENRFYFADVAAKTIYRSRVG-STEKERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE-LDGTNRKTL-KT---- 127 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~-g~~~~~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~-ldg~~~~~l-~~---- 127 (573)
+++||+++ ..+.|+.++.. |...-.+- ...+..+ .++ .++.||+... .++|..++ .+|...-.+ ..
T Consensus 36 ~~~v~~~~-~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~-~~~l~~~d~~tG~~~W~~~~~~~~~ 109 (238)
T PF13360_consen 36 GGRVYVAS-GDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTS-DGSLYALDAKTGKVLWSIYLTSSPP 109 (238)
T ss_dssp TTEEEEEE-TTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEET-TSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred CCEEEEEc-CCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccc-eeeeEecccCCcceeeeeccccccc
Confidence 77888874 55678888874 43221111 1111122 123 4788888874 34888888 456555442 21
Q ss_pred -CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCC--------CceEEEeccCCeEEEEeCCC
Q psy952 128 -AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAW--------PNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 128 -~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~--------P~glaiD~~~~~LYw~D~~~ 197 (573)
.+..+...+++ .+.+|+... ...|..+++. |...-........... ...+.++ +++||++....
T Consensus 110 ~~~~~~~~~~~~--~~~~~~~~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~g 183 (238)
T PF13360_consen 110 AGVRSSSSPAVD--GDRLYVGTS--SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGDG 183 (238)
T ss_dssp CSTB--SEEEEE--TTEEEEEET--CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCTS
T ss_pred cccccccCceEe--cCEEEEEec--cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCCC
Confidence 12334555555 567777763 4577777754 4322222100000000 1223333 56999987655
Q ss_pred CeEEEEeCCCCcEEEEEeCCccceeEE-EeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952 198 DYIASVDLDGKHKHIVISGQKVPHVFA-LTLFEDHIYWTDWNTKSINRADKFNGRD 252 (573)
Q Consensus 198 ~~I~~~~~dG~~~~~l~~~~~~~~p~~-ia~~~~~lywtd~~~~~I~~~~~~~g~~ 252 (573)
. +..++.....+. . ... ...+.+ +...++.||+++ ..+.|+.+++.+|+.
T Consensus 184 ~-~~~~d~~tg~~~-w-~~~-~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 184 R-VVAVDLATGEKL-W-SKP-ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp S-EEEEETTTTEEE-E-EEC-SS-ECECEECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred e-EEEEECCCCCEE-E-Eec-CCCccCCceeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 4 555577766544 3 322 345555 667889999999 789999999988864
No 102
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=97.04 E-value=0.0014 Score=40.20 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCcceeEEeecCCcEEEEeCCCCeEEEE
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVA 115 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~~~~I~~~ 115 (573)
+..|.|||+| ..++||++|..+++|.++
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 3579999999 789999999999999874
No 103
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.17 Score=49.15 Aligned_cols=216 Identities=12% Similarity=0.067 Sum_probs=110.7
Q ss_pred CEEEEEe-cccEEEEEcCCCceeecccCCcceEE--EEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952 17 PWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVA--MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL 93 (573)
Q Consensus 17 ~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~--v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl 93 (573)
.++++++ .+.+..+++......++......+.+ -++...+++-|++....+ +..+++.....-+++..--..|.--
T Consensus 139 n~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~ISGn~AYvA~~d~G-L~ivDVSnp~sPvli~~~n~g~g~~ 217 (370)
T COG5276 139 NYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAISGNYAYVAWRDGG-LTIVDVSNPHSPVLIGSYNTGPGTY 217 (370)
T ss_pred CEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEecCeEEEEEeCCC-eEEEEccCCCCCeEEEEEecCCceE
Confidence 3556665 45566666654433333222111211 123344788899887765 4445554332223333222233333
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-c-CCCCcceE---EEeCCCceEEEEecCC-cCeEEEEeccCCCcEE
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-T-AIQDPRGI---TLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTR 167 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~-~~~~P~~I---avdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~ 167 (573)
.+-...++.|.++...+ +...+.++....+++ + ...+|.++ +|. ..+.|+++... -+.|...+..+.....
T Consensus 218 sv~vsdnr~y~vvy~eg-vlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs--~~~~Yvadga~gl~~idisnp~spfl~s 294 (370)
T COG5276 218 SVSVSDNRAYLVVYDEG-VLIVDVSGPSSPTVFGSYETSNPVSISTVPVS--GEYAYVADGAKGLPIIDISNPPSPFLSS 294 (370)
T ss_pred EEEecCCeeEEEEcccc-eEEEecCCCCCceEeeccccCCcccccceecc--cceeeeeccccCceeEeccCCCCCchhc
Confidence 33445788999997665 445566665544444 2 44556666 553 57899998532 2334444443333222
Q ss_pred EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCce
Q psy952 168 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSI 242 (573)
Q Consensus 168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I 242 (573)
-. ...-....||.+- ++.+|++|..++.|.-+. ..-.+.+. .... .....++.+....+|.+||..+..
T Consensus 295 s~--~t~g~~a~gi~ay--~~y~yiadkn~g~vV~~s~~s~m~~~~-g~~t-i~~s~~v~~~~q~~y~~d~~~gl~ 364 (370)
T COG5276 295 SL--DTAGYQAAGIRAY--GNYNYIADKNTGAVVDASPPSMMDKRP-GRPT-IGQSCDVSVDTQIIYSTDYNGGLS 364 (370)
T ss_pred cc--cCCCccccceEEe--cCeeEeccCCceEEEeCCChhhccccc-Ccce-EeeecceEEEeeEEEEeecCCCEE
Confidence 11 1222234577765 899999998776543322 11111100 0000 123345555556899999887654
No 104
>KOG0273|consensus
Probab=96.71 E-value=0.92 Score=46.75 Aligned_cols=152 Identities=13% Similarity=0.105 Sum_probs=100.4
Q ss_pred CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE
Q psy952 5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI 83 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~ 83 (573)
.+.||.+....-.+|..+. ...++.+..+|.....+...-+.+.+|-+...+.+|.=.+.. +.+..++.-.+.....+
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD-~ttilwd~~~g~~~q~f 314 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVD-GTTILWDAHTGTVKQQF 314 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCC-ccEEEEeccCceEEEee
Confidence 4677887775556777665 456777778888766666666668899998766666555544 45555554333333333
Q ss_pred cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-eccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEec
Q psy952 84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGM 160 (573)
Q Consensus 84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~l 160 (573)
.+....+|.|||+++.=|.+-...+.|.|..+++..... +...-....+|-.+| +|.|.-+-.. ..-+|+.+.-
T Consensus 315 --~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs~~~ 390 (524)
T KOG0273|consen 315 --EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWSMGQ 390 (524)
T ss_pred --eeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeeecCC
Confidence 234555899999999999999999999999998766533 434445578888898 5555555422 1335555433
No 105
>KOG0315|consensus
Probab=96.65 E-value=0.63 Score=44.15 Aligned_cols=205 Identities=14% Similarity=0.092 Sum_probs=117.8
Q ss_pred CCEEEEEecccEEEEEcCCCceee--cccC-CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952 16 KPWLIFSNKYYVRNMSLDATQYSL--VHQD-LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG 92 (573)
Q Consensus 16 ~~~l~~s~~~~I~~i~l~g~~~~~--~~~~-~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g 92 (573)
..+|..+....|+.+++...+... .+.+ -+++.+|.|.. .++-.++....+.+...++.......++... .-+..
T Consensus 52 k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~ 129 (311)
T KOG0315|consen 52 KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNT 129 (311)
T ss_pred cchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhccCC-CCcce
Confidence 456666667789999998765422 2233 36789999996 4555556677888888887664433344333 56677
Q ss_pred eEEeecCCcEEEEeCCCCeEEEEEcCCC-ceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEE
Q psy952 93 LAVDWVGRKLYWLDRHSKQLDVAELDGT-NRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRIL 169 (573)
Q Consensus 93 lavD~~~~~LY~td~~~~~I~~~~ldg~-~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~ 169 (573)
+.+.+....|+..|. .+.|.+-+|... ....++ +.....+.|+|+|...+|--++ ..+..++-.|-+ .....|.
T Consensus 130 vvlhpnQteLis~dq-sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n--nkG~cyvW~l~~~~~~s~l~ 206 (311)
T KOG0315|consen 130 VVLHPNQTELISGDQ-SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN--NKGNCYVWRLLNHQTASELE 206 (311)
T ss_pred EEecCCcceEEeecC-CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec--CCccEEEEEccCCCccccce
Confidence 888888888988885 568999898765 334455 4556688999999544443333 234444443332 2222222
Q ss_pred ecCCCCCCCc--e--EEEeccCCeEEEEeCCCCeEEEEeCCCC-cEEEEEeCCccceeEEEeee
Q psy952 170 THEDDIAWPN--A--LTLDYFTERLYWADAHLDYIASVDLDGK-HKHIVISGQKVPHVFALTLF 228 (573)
Q Consensus 170 ~~~~~l~~P~--g--laiD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~l~~~~~~~~p~~ia~~ 228 (573)
- ...+..-+ + .-+.| +.+...+-+....+...+.++. ..+..+.+. ...--+-++-
T Consensus 207 P-~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh-~rWvWdc~FS 267 (311)
T KOG0315|consen 207 P-VHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGH-QRWVWDCAFS 267 (311)
T ss_pred E-hhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecC-CceEEeeeec
Confidence 0 11222112 2 23333 3444444455566666677776 333334432 2344555553
No 106
>KOG0279|consensus
Probab=96.61 E-value=0.73 Score=44.41 Aligned_cols=205 Identities=12% Similarity=0.048 Sum_probs=131.8
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
..+..++..+ .+..+++-...+.++..++.++.....+...-..+.++||+..++.| ++-+...+|...+.-|...-+
T Consensus 64 H~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi-vSGSrDkTiklwnt~g~ck~t 141 (315)
T KOG0279|consen 64 HFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI-VSGSRDKTIKLWNTLGVCKYT 141 (315)
T ss_pred eEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee-ecCCCcceeeeeeecccEEEE
Confidence 3466777775 56666676777889999998865544444344688899999765555 677777889888888877777
Q ss_pred eccC--CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 125 LKTA--IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 125 l~~~--~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
+... -....-+.+.|.....|+...+....+..-++++-..+.-. ...-..-+.+++.+ ++.|...-...+.++.
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~--~gh~~~v~t~~vSp-DGslcasGgkdg~~~L 218 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTF--IGHSGYVNTVTVSP-DGSLCASGGKDGEAML 218 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcc--ccccccEEEEEECC-CCCEEecCCCCceEEE
Confidence 7654 45578888999765666665454566666677765543322 23334457888885 4556555556677888
Q ss_pred EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 203 ~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
-+++-+.. +..-.......++++..++++..-....+|..-+..++..+..|
T Consensus 219 wdL~~~k~--lysl~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 219 WDLNEGKN--LYSLEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEEL 270 (315)
T ss_pred EEccCCce--eEeccCCCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhc
Confidence 88874433 22211134556777666665555555556766666666544444
No 107
>KOG1446|consensus
Probab=96.57 E-value=0.85 Score=44.63 Aligned_cols=203 Identities=11% Similarity=0.096 Sum_probs=120.6
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-CcceEEEcCCCCCcceeEE-eecCCcEEEEeCCCCeEEEEEcC-CC
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-TEKERVIRHDSHGLEGLAV-DWVGRKLYWLDRHSKQLDVAELD-GT 120 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~i~~~~~~~p~glav-D~~~~~LY~td~~~~~I~~~~ld-g~ 120 (573)
-..+.+|+|+..+..|.. -.....|+.++... ....+|.... ..+.-+-+ ...+..||=+......|.-.+|. ..
T Consensus 14 ~~~i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNk 91 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNK 91 (311)
T ss_pred CCceeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEecCCceEEEccCCCCCceEEEEeecCc
Confidence 456889999965555544 45566788888654 4444443332 23333333 23344455555556788888874 45
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I 200 (573)
..+.+...-....+|.+.|.+ -.|.+-. ....|.--++.-.+-+.++ .+..+.-.|+|+ +|.||.+-.+...|
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~-d~FlS~S-~D~tvrLWDlR~~~cqg~l----~~~~~pi~AfDp-~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKD-DTFLSSS-LDKTVRLWDLRVKKCQGLL----NLSGRPIAAFDP-EGLIFALANGSELI 164 (311)
T ss_pred eEEEcCCCCceEEEEEecCCC-CeEEecc-cCCeEEeeEecCCCCceEE----ecCCCcceeECC-CCcEEEEecCCCeE
Confidence 555555666778999999955 7777763 2445665666555555555 344455678895 56666666666678
Q ss_pred EEEeCC----CCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 201 ASVDLD----GKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 201 ~~~~~d----G~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
..+|+. |......+.......-..|.+ ++..|.++. ..+.|+.++.++|.....+
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~~~~tf 225 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGTVKSTF 225 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCcEeeeE
Confidence 777753 222332232122345566666 345566665 4566888888888855444
No 108
>KOG2397|consensus
Probab=96.56 E-value=0.0022 Score=65.79 Aligned_cols=71 Identities=37% Similarity=0.550 Sum_probs=58.5
Q ss_pred ceecCCC-cccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCC-CccccCCccccCCCCCCCCCCCCCCC
Q psy952 415 EFACRNG-HCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT-NYRCIPKWLFCDGKDDCRDGSDELPQ 489 (573)
Q Consensus 415 ~f~C~~g-~ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~-~~~c~~~~~~Cdg~~dC~d~sDe~~~ 489 (573)
.|.|.+| .=|+..++-|+.-||.|||||.. +..|..+.|+|.+.+ ...=||.+.+=||+.||-|||||...
T Consensus 44 ~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPG----tsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~S 116 (480)
T KOG2397|consen 44 MFKCLDGSKTISFSQLNDDSCDCLDGSDEPG----TSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLS 116 (480)
T ss_pred ceeeccCCcccCHHHhccccccCCCCCCCCc----cccCCCCceeeeecCCCceeeechhccCcccccccCCCCccC
Confidence 7999988 78999999999999999999964 345889999998621 22357778889999999999999644
No 109
>KOG0291|consensus
Probab=96.55 E-value=1.6 Score=47.69 Aligned_cols=147 Identities=9% Similarity=0.014 Sum_probs=97.4
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCce
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNR 122 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~ 122 (573)
+..+..|+|.+ ++.+..+....++|..++...+--.+.+......+.++.+-. .++..++-+..|+|...++. ..+-
T Consensus 350 ~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 350 SDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred ccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeeccccee
Confidence 34578899986 677778888889999999876544334444556788888874 55666666777888887774 3444
Q ss_pred eEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCC
Q psy952 123 KTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAH 196 (573)
Q Consensus 123 ~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~ 196 (573)
+++. ....+-.-||+||. |.|..+-.-..-.|..-++-.....-++ .+-..| .+|++++.+..|+-+.|.
T Consensus 428 RTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiL---sGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDIL---SGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred eeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehh---cCCCCcceeeEEccccCeEEecccc
Confidence 4444 34445678999994 5555554334557777776543333333 444555 589999888877766553
No 110
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.52 E-value=0.22 Score=52.54 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=96.1
Q ss_pred EEEEEEcCCCEEEEEEC----CCCeEEEEEcCCCcceEEEcCC--CCCcceeEEeecCCcEEEEe---CCCCeEEEEEcC
Q psy952 48 VAMDFHYKENRFYFADV----AAKTIYRSRVGSTEKERVIRHD--SHGLEGLAVDWVGRKLYWLD---RHSKQLDVAELD 118 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~~~i~~~~--~~~p~glavD~~~~~LY~td---~~~~~I~~~~ld 118 (573)
.++........+|++.. ....|+..+.+|.....+.... +..|. .-+.+..|.+.. ....+|++.+++
T Consensus 150 t~~~g~~~~~i~~v~~~~~~~~~~~l~~~D~dg~~~~~l~~~~~~~~~p~---ws~~~~~~~y~~f~~~~~~~i~~~~l~ 226 (425)
T COG0823 150 TGIKGAFDTRIAYVAESDGGPLPYELALGDYDGYNQQKLTDSGSLILTPA---WSPDGKKLAYVSFELGGCPRIYYLDLN 226 (425)
T ss_pred cCCcceecceEEEEeecccCCCCceEEEEccCCcceeEecccCcceeccc---cCcCCCceEEEEEecCCCceEEEEecc
Confidence 34444444556665554 3346777777765444333222 11121 111233332222 222468899998
Q ss_pred CCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952 119 GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 119 g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~ 197 (573)
...+.++++-..+-...++.|...+|.++-.. ....|+.+++++.....|.. ...+.. .=.+.+++.+||++....
T Consensus 227 ~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~-~~gi~~--~Ps~spdG~~ivf~Sdr~ 303 (425)
T COG0823 227 TGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTN-GFGINT--SPSWSPDGSKIVFTSDRG 303 (425)
T ss_pred CCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceeccc-CCcccc--CccCCCCCCEEEEEeCCC
Confidence 88877777533344455677777777776543 36789999999998666542 222222 334567788888876554
Q ss_pred C--eEEEEeCCCCcEEEEEeC
Q psy952 198 D--YIASVDLDGKHKHIVISG 216 (573)
Q Consensus 198 ~--~I~~~~~dG~~~~~l~~~ 216 (573)
+ .|++++.+|+..+.+...
T Consensus 304 G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 304 GRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred CCcceEEECCCCCceeEeecc
Confidence 4 699999999987666543
No 111
>KOG0285|consensus
Probab=96.43 E-value=0.53 Score=46.84 Aligned_cols=192 Identities=15% Similarity=0.147 Sum_probs=110.7
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN- 121 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~- 121 (573)
.++.+..||+|+. +..|.+....+.|..+++..+.....+...+..++|++|....-.||-+- ..+.|---+|.-..
T Consensus 150 HlgWVr~vavdP~-n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nkv 227 (460)
T KOG0285|consen 150 HLGWVRSVAVDPG-NEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKV 227 (460)
T ss_pred ccceEEEEeeCCC-ceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhhh
Confidence 3566899999985 77788888889999999987766655555578999999987666665553 34566667775433
Q ss_pred eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeE
Q psy952 122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I 200 (573)
.+.....+...+.|+++|.-..|+ |- ++...|..-+|........+ .+-..| ..+...+.+..||-. +....|
T Consensus 228 IR~YhGHlS~V~~L~lhPTldvl~-t~-grDst~RvWDiRtr~~V~~l---~GH~~~V~~V~~~~~dpqvit~-S~D~tv 301 (460)
T KOG0285|consen 228 IRHYHGHLSGVYCLDLHPTLDVLV-TG-GRDSTIRVWDIRTRASVHVL---SGHTNPVASVMCQPTDPQVITG-SHDSTV 301 (460)
T ss_pred HHHhccccceeEEEeccccceeEE-ec-CCcceEEEeeecccceEEEe---cCCCCcceeEEeecCCCceEEe-cCCceE
Confidence 222335788899999999666554 43 23455555555444332222 233333 234444445555533 344455
Q ss_pred EEEeCC-CCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEE
Q psy952 201 ASVDLD-GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244 (573)
Q Consensus 201 ~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~ 244 (573)
..-++. |....++... -....+|++.-....++-...+.|..
T Consensus 302 rlWDl~agkt~~tlt~h--kksvral~lhP~e~~fASas~dnik~ 344 (460)
T KOG0285|consen 302 RLWDLRAGKTMITLTHH--KKSVRALCLHPKENLFASASPDNIKQ 344 (460)
T ss_pred EEeeeccCceeEeeecc--cceeeEEecCCchhhhhccCCcccee
Confidence 554543 3223333322 23455566543332233333334433
No 112
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.38 E-value=1.3 Score=48.89 Aligned_cols=190 Identities=11% Similarity=0.053 Sum_probs=105.1
Q ss_pred cceEEEEEEcCCCEEEEEEC-------CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC----------
Q psy952 45 LNVVAMDFHYKENRFYFADV-------AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR---------- 107 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~-------~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~---------- 107 (573)
..+..+++.+.++++.++.. ....|+.+...+.. ..+.... ....-.+++.++.|++...
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCC--CCCCceECCCCCceEEEecCcceEEEecc
Confidence 45677888888888777652 23478888875544 3343221 1223345555565655532
Q ss_pred -CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEE---EeccCCCcEEEEe---cCCCCCC-Cc
Q psy952 108 -HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGK---IGMDGSNFTRILT---HEDDIAW-PN 179 (573)
Q Consensus 108 -~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r---~~ldG~~~~~l~~---~~~~l~~-P~ 179 (573)
..+.|++..+++...+. ..-..+..+++.|...+|.+.-. .+|+. ...++.. ..+.. ....+.. +.
T Consensus 427 ~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~-~~l~~~~~l~~~l~~~~~ 500 (591)
T PRK13616 427 PATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQ-YALTNPREVGPGLGDTAV 500 (591)
T ss_pred CCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCc-eeecccEEeecccCCccc
Confidence 23455555555433322 11224888999998888877762 35554 2323332 22310 0233333 35
Q ss_pred eEEEeccCCeEEEEeCC-CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 180 ALTLDYFTERLYWADAH-LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
.++.- .++.|++.-.. ...++++.+||...+.+..+.......+|+-..+.||++|... +....
T Consensus 501 ~l~W~-~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~~iyv~~~~g--~~~l~ 565 (591)
T PRK13616 501 SLDWR-TGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPSTVYVTDARA--VLQLP 565 (591)
T ss_pred cceEe-cCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCceEEEEcCCc--eEEec
Confidence 55554 45557766443 3469999999988765433321333456666667899997543 44443
No 113
>KOG0266|consensus
Probab=96.30 E-value=1.5 Score=46.97 Aligned_cols=124 Identities=17% Similarity=0.199 Sum_probs=84.5
Q ss_pred ecccEEEEEc-CC-CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952 23 NKYYVRNMSL-DA-TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR 100 (573)
Q Consensus 23 ~~~~I~~i~l-~g-~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~ 100 (573)
....|+..++ +. ..+..+......+.+++|.+.. .++++-...+.|+..++.+......+...-..+.++++... +
T Consensus 223 ~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d-~ 300 (456)
T KOG0266|consen 223 DDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPD-G 300 (456)
T ss_pred CCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCC-C
Confidence 3567777777 33 3334444444557899999987 88888888889999999875444444444568889999864 5
Q ss_pred cEEEEeCCCCeEEEEEcCCCce--eEeccCCCCc---ceEEEeCCCceEEEEe
Q psy952 101 KLYWLDRHSKQLDVAELDGTNR--KTLKTAIQDP---RGITLHPGIGYVYFSS 148 (573)
Q Consensus 101 ~LY~td~~~~~I~~~~ldg~~~--~~l~~~~~~P---~~Iavdp~~g~LYwtd 148 (573)
+++++-+..+.|.+.++.+... ..++.....| ..+.++|...+|+..-
T Consensus 301 ~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 301 NLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred CEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec
Confidence 5556656788999999987773 2334444445 7888888665655543
No 114
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.30 E-value=0.33 Score=49.49 Aligned_cols=106 Identities=21% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCCCcceeEEeecCCcEEEEeCCCCe------EEEEEcCCC-----ceeE-----ecc----CC----CCcceEEEeCCC
Q psy952 86 DSHGLEGLAVDWVGRKLYWLDRHSKQ------LDVAELDGT-----NRKT-----LKT----AI----QDPRGITLHPGI 141 (573)
Q Consensus 86 ~~~~p~glavD~~~~~LY~td~~~~~------I~~~~ldg~-----~~~~-----l~~----~~----~~P~~Iavdp~~ 141 (573)
.++...||+++. .+..||+-+.++. ++.+.++.. .... |.. .+ .++.||++ +..
T Consensus 18 ~~GGlSgl~~~~-~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~-~~~ 95 (326)
T PF13449_consen 18 PFGGLSGLDYDP-DDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAV-PPD 95 (326)
T ss_pred ccCcEeeEEEeC-CCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEE-ecC
Confidence 356778898886 3445565444444 666665541 1111 111 11 26889999 668
Q ss_pred ceEEEEecCCc------CeEEEEeccCCCcEEEEecCCCC-------------CCCceEEEeccCCeEEEEeC
Q psy952 142 GYVYFSSWNLQ------AYIGKIGMDGSNFTRILTHEDDI-------------AWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 142 g~LYwtd~~~~------~~I~r~~ldG~~~~~l~~~~~~l-------------~~P~glaiD~~~~~LYw~D~ 195 (573)
|.+||++-+ . +.|.+++++|.....+.. ...+ ....|||+.+++.+||.+-.
T Consensus 96 g~~~is~E~-~~~~~~~p~I~~~~~~G~~~~~~~v-P~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E 166 (326)
T PF13449_consen 96 GSFWISSEG-GRTGGIPPRIRRFDLDGRVIRRFPV-PAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME 166 (326)
T ss_pred CCEEEEeCC-ccCCCCCCEEEEECCCCcccceEcc-ccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence 999999854 5 899999999988666521 2222 12248999988887888743
No 115
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.30 E-value=1.3 Score=44.58 Aligned_cols=183 Identities=15% Similarity=0.103 Sum_probs=105.7
Q ss_pred CCCEEEEEe---cccEEEEEcCCCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC--
Q psy952 15 IKPWLIFSN---KYYVRNMSLDATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-- 87 (573)
Q Consensus 15 ~~~~l~~s~---~~~I~~i~l~g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-- 87 (573)
...||++.+ ..+|.++++...++... .++- .+.|=..+.. |.+--..|++..+.++....+....+.+
T Consensus 105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC----~~iyP~~~~~-F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~ 179 (342)
T PF06433_consen 105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC----WLIYPSGNRG-FSMLCGDGSLLTVTLDADGKEAQKSTKVFD 179 (342)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE----EEEEEEETTE-EEEEETTSCEEEEEETSTSSEEEEEEEESS
T ss_pred CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE----EEEEecCCCc-eEEEecCCceEEEEECCCCCEeEeeccccC
Confidence 445777766 36788888887765322 2221 2223333344 5566678888888887433322211111
Q ss_pred --CCc--ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc----------CCCCcc---eEEEeCCCceEEEEecC
Q psy952 88 --HGL--EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT----------AIQDPR---GITLHPGIGYVYFSSWN 150 (573)
Q Consensus 88 --~~p--~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~----------~~~~P~---~Iavdp~~g~LYwtd~~ 150 (573)
..| ..=+++..++++||+.. .|.|+.+++.|...+.... .-..|- -+|+++..+.||+....
T Consensus 180 ~~~dp~f~~~~~~~~~~~~~F~Sy-~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~ 258 (342)
T PF06433_consen 180 PDDDPLFEHPAYSRDGGRLYFVSY-EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQ 258 (342)
T ss_dssp TTTS-B-S--EEETTTTEEEEEBT-TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE
T ss_pred CCCcccccccceECCCCeEEEEec-CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecC
Confidence 111 11123335668888764 6899999999887654321 111243 49999999999998631
Q ss_pred C--------cCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCC-eEEEEeCCCCeEEEEeCCC
Q psy952 151 L--------QAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTE-RLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 151 ~--------~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~-~LYw~D~~~~~I~~~~~dG 207 (573)
. ...|+.+++.-..+..-+ .|..| .+|+|..+.. +||-++...+.|..++.-.
T Consensus 259 g~~gsHKdpgteVWv~D~~t~krv~Ri----~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~t 321 (342)
T PF06433_consen 259 GGEGSHKDPGTEVWVYDLKTHKRVARI----PLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAAT 321 (342)
T ss_dssp --TT-TTS-EEEEEEEETTTTEEEEEE----EEEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT
T ss_pred CCCCCccCCceEEEEEECCCCeEEEEE----eCCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcC
Confidence 1 126888877655444333 22223 3677765544 6676777777888887653
No 116
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.29 E-value=1.9 Score=45.53 Aligned_cols=219 Identities=16% Similarity=0.259 Sum_probs=115.5
Q ss_pred ccEEEEEcCCCceeecccCCcce--EEEEEEcCCCEEEEEECCC----------CeEEEEEcCCCcce--EEEcCCCCCc
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNV--VAMDFHYKENRFYFADVAA----------KTIYRSRVGSTEKE--RVIRHDSHGL 90 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~--~~v~~d~~~~~ly~~d~~~----------~~I~~~~~~g~~~~--~i~~~~~~~p 90 (573)
..|+.+++.+.... ...+..+ .+|.|...+..||++.... ..|++..+.....+ .|+. ....+
T Consensus 150 ~~l~v~Dl~tg~~l--~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe-~~~~~ 226 (414)
T PF02897_consen 150 YTLRVFDLETGKFL--PDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFE-EPDEP 226 (414)
T ss_dssp EEEEEEETTTTEEE--EEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC--TTCT
T ss_pred EEEEEEECCCCcCc--CCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEe-ecCCC
Confidence 35777777655321 1122222 2388988878898887533 35888888654433 3443 32333
Q ss_pred c---eeEEeecCCcEEEEeC--CC-CeEEEEEcCCC-----ceeEeccCCCCcceEEEeCCCceEEE-EecC-CcCeEEE
Q psy952 91 E---GLAVDWVGRKLYWLDR--HS-KQLDVAELDGT-----NRKTLKTAIQDPRGITLHPGIGYVYF-SSWN-LQAYIGK 157 (573)
Q Consensus 91 ~---glavD~~~~~LY~td~--~~-~~I~~~~ldg~-----~~~~l~~~~~~P~~Iavdp~~g~LYw-td~~-~~~~I~r 157 (573)
. ++.+...++.|++.-. .. ..|+++++... ..+.|......-...+-+. ++.+|+ |+.+ ...+|.+
T Consensus 227 ~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~ 305 (414)
T PF02897_consen 227 FWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVA 305 (414)
T ss_dssp TSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEE
T ss_pred cEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEE
Confidence 3 5666666777776542 23 46888888764 3333444333333333333 555554 5543 2568999
Q ss_pred EeccCCCc----EEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCC-CCcEEEEEeCCccceeEEEee--e
Q psy952 158 IGMDGSNF----TRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIASVDLD-GKHKHIVISGQKVPHVFALTL--F 228 (573)
Q Consensus 158 ~~ldG~~~----~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~--~ 228 (573)
++++.... .+++. ...-..-.++.+ .+++|++.... ..+|..++++ +.....+.... .....++.. .
T Consensus 306 ~~l~~~~~~~~~~~l~~-~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~ 381 (414)
T PF02897_consen 306 VDLADPSPAEWWTVLIP-EDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFD 381 (414)
T ss_dssp EETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT
T ss_pred ecccccccccceeEEcC-CCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCC
Confidence 99887652 34551 111112345555 47888877554 3478889998 54444443322 233334432 3
Q ss_pred CCeEEEe--cCC-CCceEEEeccCCc
Q psy952 229 EDHIYWT--DWN-TKSINRADKFNGR 251 (573)
Q Consensus 229 ~~~lywt--d~~-~~~I~~~~~~~g~ 251 (573)
++.++++ .+. -..|++++..+++
T Consensus 382 ~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 382 SDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp -SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 4445443 332 2457777766554
No 117
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.26 E-value=1.5 Score=44.15 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=115.2
Q ss_pred EEEEEcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC--CCceeE-
Q psy952 49 AMDFHYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD--GTNRKT- 124 (573)
Q Consensus 49 ~v~~d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld--g~~~~~- 124 (573)
-+++...++.+|+.+.. ..+|-.+++.....-..+ ..|--.-+-+.++.=|.+-=+.|++..+.|+ |+..+.
T Consensus 99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei----~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~ 174 (342)
T PF06433_consen 99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEI----DTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS 174 (342)
T ss_dssp GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEE----EGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeee----cCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence 44666678999999975 568999999765432222 1222211222232234444456788877776 443321
Q ss_pred --eccCCCCcc--eEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC--------CCCCc---eEEEeccCCe
Q psy952 125 --LKTAIQDPR--GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--------IAWPN---ALTLDYFTER 189 (573)
Q Consensus 125 --l~~~~~~P~--~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~--------l~~P~---glaiD~~~~~ 189 (573)
+......|. .=++....+.+||... .+.|+.+++.|...+.... -+- -=.|. -+|++...++
T Consensus 175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy--~G~v~~~dlsg~~~~~~~~-~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r 251 (342)
T PF06433_consen 175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSY--EGNVYSADLSGDSAKFGKP-WSLLTDAEKADGWRPGGWQLIAYHAASGR 251 (342)
T ss_dssp EEESSTTTS-B-S--EEETTTTEEEEEBT--TSEEEEEEETTSSEEEEEE-EESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred ccccCCCCcccccccceECCCCeEEEEec--CCEEEEEeccCCcccccCc-ccccCccccccCcCCcceeeeeeccccCe
Confidence 111222221 1123344667887763 6789999999887554331 000 11243 3899999999
Q ss_pred EEEEeCC----C-----CeEEEEeCCCCcEEEEEeCCccceeE-EEeeeCC---eEEEecCCCCceEEEeccCCcceEEE
Q psy952 190 LYWADAH----L-----DYIASVDLDGKHKHIVISGQKVPHVF-ALTLFED---HIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 190 LYw~D~~----~-----~~I~~~~~dG~~~~~l~~~~~~~~p~-~ia~~~~---~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
||+.--. . ..|+.+++....|..-+. +.+|. +|++-.+ .||-++...+.|...+..+|+.+..+
T Consensus 252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~---l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~ 328 (342)
T PF06433_consen 252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIP---LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI 328 (342)
T ss_dssp EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEE---EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEe---CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence 9997321 1 158888887655432222 34554 7777432 57777888889999999999888877
Q ss_pred cccCCCc
Q psy952 257 RNTTHRP 263 (573)
Q Consensus 257 ~~~~~~p 263 (573)
...-..|
T Consensus 329 ~~lG~~~ 335 (342)
T PF06433_consen 329 EQLGETP 335 (342)
T ss_dssp ---SSS-
T ss_pred hccCCCc
Confidence 6533333
No 118
>PTZ00421 coronin; Provisional
Probab=96.26 E-value=2.2 Score=46.06 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=118.2
Q ss_pred cccEEEEEcCCCc--------eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952 24 KYYVRNMSLDATQ--------YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAV 95 (573)
Q Consensus 24 ~~~I~~i~l~g~~--------~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glav 95 (573)
...|+..++.... ...+......+..|+|++..+.++++-...+.|..+++........+......+.+|++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 4667777765321 11111223457789999877667777677788999998755433333333346788888
Q ss_pred eecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCC-CCcceEEEeCCCceEEEEecC--CcCeEEEEeccCCC-cEEEEe
Q psy952 96 DWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAI-QDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGSN-FTRILT 170 (573)
Q Consensus 96 D~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~-~~P~~Iavdp~~g~LYwtd~~--~~~~I~r~~ldG~~-~~~l~~ 170 (573)
.+. +.++++-...+.|.+.++.... ...+.... .....+...+..+.|+.+-.. ....|...++.... ...+..
T Consensus 177 spd-G~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~ 255 (493)
T PTZ00421 177 NLD-GSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD 255 (493)
T ss_pred ECC-CCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec
Confidence 764 5566666677899999986433 22232211 112334455545555544321 23455555554222 111110
Q ss_pred cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeeeCCeEEEecCCCCceEEEeccC
Q psy952 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLFEDHIYWTDWNTKSINRADKFN 249 (573)
Q Consensus 171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~~~~lywtd~~~~~I~~~~~~~ 249 (573)
........-..+|+....||.+-.+.+.|...++............ ...| .|+++.-.+. .|.....|.|+-|.+
T Consensus 256 -~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~-s~~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~ 331 (493)
T PTZ00421 256 -LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYS-SVEPHKGLCMMPKWS--LDTRKCEIARFYALT 331 (493)
T ss_pred -cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeecc-CCCCCcceEeccccc--ccccceeeeEEEEec
Confidence 0111111223567777788887666788888888654433322211 1222 4555433221 244445566665555
Q ss_pred Ccc
Q psy952 250 GRD 252 (573)
Q Consensus 250 g~~ 252 (573)
.+.
T Consensus 332 ~~~ 334 (493)
T PTZ00421 332 YHS 334 (493)
T ss_pred CCe
Confidence 443
No 119
>KOG1219|consensus
Probab=96.21 E-value=0.098 Score=62.93 Aligned_cols=88 Identities=20% Similarity=0.521 Sum_probs=61.9
Q ss_pred cccccccCccceee-eccceeecCCCCCCCcccCCccccCCCeeeec--ceeeCCcCCCCCCCCCCCCCC---CccccCC
Q psy952 279 AWLTAHRGSTTVAD-MIRSVYLGSGNKENSTCSSSQFRCNNGKCIDY--HLVCNKESDCEDDSDEPLHCN---VDECAKV 352 (573)
Q Consensus 279 lCl~~~~~~~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C~~g~Ci~~--~~~cd~~~~c~d~sde~~~c~---~~~C~~~ 352 (573)
.|...+ +.+|+| ||..|...+-......|.+++.. ..|.|||. .|.|++ +.+-.+. .|. +++|..
T Consensus 3877 ~C~~~~--~ggy~CkCpsqysG~~CEi~~epC~snPC~-~GgtCip~~n~f~CnC----~~gyTG~-~Ce~~Gi~eCs~- 3947 (4289)
T KOG1219|consen 3877 TCISQP--KGGYKCKCPSQYSGNHCEIDLEPCASNPCL-TGGTCIPFYNGFLCNC----PNGYTGK-RCEARGISECSK- 3947 (4289)
T ss_pred EecCCC--CCceEEeCcccccCcccccccccccCCCCC-CCCEEEecCCCeeEeC----CCCccCc-eeeccccccccc-
Confidence 455444 467999 99999876555557778776632 46789997 788964 4443333 443 456744
Q ss_pred CCCccCC--ccccCCCCccccCCCCce
Q psy952 353 ETNQCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 353 ~~~~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
..|.+ .|.+..++|.|.|.++|.
T Consensus 3948 --n~C~~gg~C~n~~gsf~CncT~g~~ 3972 (4289)
T KOG1219|consen 3948 --NVCGTGGQCINIPGSFHCNCTPGIL 3972 (4289)
T ss_pred --ccccCCceeeccCCceEeccChhHh
Confidence 56777 899999999999998876
No 120
>KOG0285|consensus
Probab=96.20 E-value=1.3 Score=44.28 Aligned_cols=238 Identities=16% Similarity=0.126 Sum_probs=138.6
Q ss_pred ceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952 8 TCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH 85 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~ 85 (573)
.|.+.+-...++.-+. .+.|..+++...++.+.+. ....+.+|++....-+||-+- ..+.|.-++|.-...-.-...
T Consensus 155 r~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-edk~VKCwDLe~nkvIR~YhG 233 (460)
T KOG0285|consen 155 RSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-EDKQVKCWDLEYNKVIRHYHG 233 (460)
T ss_pred EEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-CCCeeEEEechhhhhHHHhcc
Confidence 4777664445554433 5688899998887766666 355688999997777776553 456788888864432111223
Q ss_pred CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CC
Q psy952 86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GS 163 (573)
Q Consensus 86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~ 163 (573)
.+..+..|++.+.-+.| +|-.....|.+-++........+. .-.....+...|.+..+|-.. ....|.--++. |.
T Consensus 234 HlS~V~~L~lhPTldvl-~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S--~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 234 HLSGVYCLDLHPTLDVL-VTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS--HDSTVRLWDLRAGK 310 (460)
T ss_pred ccceeEEEeccccceeE-EecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec--CCceEEEeeeccCc
Confidence 46788889888755544 555555567776766554433333 222344555555444554332 12333333322 33
Q ss_pred CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC-CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCce
Q psy952 164 NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL-DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSI 242 (573)
Q Consensus 164 ~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~-dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I 242 (573)
...++. ..-....+|++.|. ..+| |.+..+.|....+ .|...+. +++. ......|++.++.+|++-..++.|
T Consensus 311 t~~tlt---~hkksvral~lhP~-e~~f-ASas~dnik~w~~p~g~f~~n-lsgh-~~iintl~~nsD~v~~~G~dng~~ 383 (460)
T KOG0285|consen 311 TMITLT---HHKKSVRALCLHPK-ENLF-ASASPDNIKQWKLPEGEFLQN-LSGH-NAIINTLSVNSDGVLVSGGDNGSI 383 (460)
T ss_pred eeEeee---cccceeeEEecCCc-hhhh-hccCCccceeccCCccchhhc-cccc-cceeeeeeeccCceEEEcCCceEE
Confidence 333333 22223467787753 3344 4455566666554 3443333 2222 335567788889999998888888
Q ss_pred EEEeccCCcceEEE
Q psy952 243 NRADKFNGRDYRVL 256 (573)
Q Consensus 243 ~~~~~~~g~~~~~l 256 (573)
..-+..+|-+.+.+
T Consensus 384 ~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 384 MFWDWKSGHNYQRG 397 (460)
T ss_pred EEEecCcCcccccc
Confidence 87777777665544
No 121
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=96.19 E-value=0.19 Score=54.54 Aligned_cols=141 Identities=20% Similarity=0.227 Sum_probs=81.2
Q ss_pred eEEEEE---EcCCCEEEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCC-
Q psy952 47 VVAMDF---HYKENRFYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGT- 120 (573)
Q Consensus 47 ~~~v~~---d~~~~~ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~- 120 (573)
-.++++ ++.+..+|.+|-. .+.|||+-.+......-. -....+ -..+.||++... .+.++-+.|.-.
T Consensus 246 HE~a~v~~~~~~~~vvY~gDD~~~~~lYkFVs~~~~~~~~~------~~~~~l-l~~GtLyaak~~~~g~~~Wv~L~~~~ 318 (524)
T PF05787_consen 246 HEAAAVVLADPGRVVVYMGDDGRNGYLYKFVSDKPWDPGDR------AANRDL-LDEGTLYAAKFNQDGTGEWVPLGHGQ 318 (524)
T ss_pred ccceeEEeecCCeEEEEEEecCCCCeEEEEecCCCCCCccc------chhhhh-hhCCEeceEEECCCCcEEEEECCCcc
Confidence 346666 7777889999754 568898877653221000 000000 024556655422 233443443211
Q ss_pred -----------ceeEe-----------ccCCCCcceEEEeCCCceEEEEecCCc------------------CeEEEEec
Q psy952 121 -----------NRKTL-----------KTAIQDPRGITLHPGIGYVYFSSWNLQ------------------AYIGKIGM 160 (573)
Q Consensus 121 -----------~~~~l-----------~~~~~~P~~Iavdp~~g~LYwtd~~~~------------------~~I~r~~l 160 (573)
...++ .+.+.+|.+|+++|.++.||++..... +.|+|...
T Consensus 319 ~~l~~~~~~~~~a~v~~~tr~aA~~~GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~ 398 (524)
T PF05787_consen 319 GGLTAKNGFADQADVLIETRRAADAVGATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDP 398 (524)
T ss_pred cccccCCCCCChHHhhhhhhhccccCccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecc
Confidence 01111 135677999999999999999964322 47999988
Q ss_pred cCC-------CcEEEEe--c-------------CCCCCCCceEEEeccCCeEEEEeC
Q psy952 161 DGS-------NFTRILT--H-------------EDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 161 dG~-------~~~~l~~--~-------------~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
++. .-.+++. . ...+..|.+|++|+ .++||+..-
T Consensus 399 ~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~~~~~~f~sPDNL~~d~-~G~LwI~eD 454 (524)
T PF05787_consen 399 DGNDHAATTFTWELFLVGGDPTDASGNGSNKCDDNGFASPDNLAFDP-DGNLWIQED 454 (524)
T ss_pred cCCccccceeEEEEEEEecCcccccccccCcccCCCcCCCCceEECC-CCCEEEEeC
Confidence 765 2222221 0 23477899999996 567777653
No 122
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.16 E-value=1 Score=46.13 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=97.6
Q ss_pred EEEEEe---cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCc-ce
Q psy952 18 WLIFSN---KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL-EG 92 (573)
Q Consensus 18 ~l~~s~---~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p-~g 92 (573)
+|+.++ ...++.++|.....+.+..+. .+..|..+.+.+..|||.. ....|+++++++...++|....-... .|
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e~~~vy~~p~~~~g~g 128 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK-NGRSLRRVDLDTLEERVVYEVPDDWKGYG 128 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE-TTTEEEEEETTT--EEEEEE--TTEEEEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE-CCCeEEEEECCcCcEEEEEECCccccccc
Confidence 444454 468999999988776664432 2233455667889988765 33589999998876555543221111 11
Q ss_pred e-EEeecCCcEEEEe----------------------CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCce-EEEEe
Q psy952 93 L-AVDWVGRKLYWLD----------------------RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGY-VYFSS 148 (573)
Q Consensus 93 l-avD~~~~~LY~td----------------------~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~-LYwtd 148 (573)
- .++. ...+++.- ....+|..+++.+..+++++..-.+..-+-..|.... |-+.-
T Consensus 129 t~v~n~-d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCH 207 (386)
T PF14583_consen 129 TWVANS-DCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCH 207 (386)
T ss_dssp EEEE-T-TSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE
T ss_pred ceeeCC-CccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEec
Confidence 1 1121 12222211 0124789999998888888865444445555554433 22322
Q ss_pred cC---C-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC-C---CCeEEEEeCCCCcEEEEEeCCccc
Q psy952 149 WN---L-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA-H---LDYIASVDLDGKHKHIVISGQKVP 220 (573)
Q Consensus 149 ~~---~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~-~---~~~I~~~~~dG~~~~~l~~~~~~~ 220 (573)
-| . ..+|+.++.||++.+.+.. .....+-.-=...+++.+|++... . ...|..++++...++.+....
T Consensus 208 EGpw~~Vd~RiW~i~~dg~~~~~v~~-~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p--- 283 (386)
T PF14583_consen 208 EGPWDLVDQRIWTINTDGSNVKKVHR-RMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMP--- 283 (386)
T ss_dssp -S-TTTSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE----
T ss_pred cCCcceeceEEEEEEcCCCcceeeec-CCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCC---
Confidence 12 2 3599999999999877652 111100000111233444444222 1 124777777765555544321
Q ss_pred eeEEEee-eCCeEEEecCCC
Q psy952 221 HVFALTL-FEDHIYWTDWNT 239 (573)
Q Consensus 221 ~p~~ia~-~~~~lywtd~~~ 239 (573)
.-.-+.. .++.|++.|...
T Consensus 284 ~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 284 WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp SEEEEEE-TTSSEEEEEE--
T ss_pred ceeeeEEcCCCCEEEecCCC
Confidence 1111222 467788887654
No 123
>PTZ00421 coronin; Provisional
Probab=95.95 E-value=3.1 Score=44.95 Aligned_cols=116 Identities=7% Similarity=0.016 Sum_probs=74.9
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-------ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-------KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE 116 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-------~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ 116 (573)
...+.+|+|++.++.++++-...+.|..+++.... ....+...-..+..|++.+..++++++-...+.|.+.+
T Consensus 75 ~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 75 EGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWD 154 (493)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEE
Confidence 34578999998666666666677888888875431 11122222356778888877767777777788899999
Q ss_pred cCCCcee-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 117 LDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 117 ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
+...... .+........+|+++|. |.++++-. ....|...++.
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spd-G~lLatgs-~Dg~IrIwD~r 198 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLD-GSLLCTTS-KDKKLNIIDPR 198 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECC-CCEEEEec-CCCEEEEEECC
Confidence 8754433 33234445789999995 45555542 35566666654
No 124
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.96 Score=41.93 Aligned_cols=180 Identities=17% Similarity=0.148 Sum_probs=86.7
Q ss_pred EEEEEe----cccEEEEEcCCCceee--ccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-CCC
Q psy952 18 WLIFSN----KYYVRNMSLDATQYSL--VHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-SHG 89 (573)
Q Consensus 18 ~l~~s~----~~~I~~i~l~g~~~~~--~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-~~~ 89 (573)
+++.+. ...|++.+|.+.+... .+. .-..-.|+. ..++.+|..-+..+.-++++.+.-. .+-... -+.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit--~~gd~~y~LTw~egvaf~~d~~t~~--~lg~~~y~Ge 132 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT--KLGDYFYQLTWKEGVAFKYDADTLE--ELGRFSYEGE 132 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCcccccccee--eccceEEEEEeccceeEEEChHHhh--hhcccccCCc
Confidence 455444 3578888887554321 111 111123333 3466777777777766776665321 111101 123
Q ss_pred cceeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEecc----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKT----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 90 p~glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
=.||+.| ..+|..+| ++..++..++.. ...++.++ .+.+-+- +-...|.||---|- ..+|.|+..+-.
T Consensus 133 GWgLt~d--~~~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNE--LE~VdG~lyANVw~-t~~I~rI~p~sG 206 (262)
T COG3823 133 GWGLTSD--DKNLIMSD-GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNE--LEWVDGELYANVWQ-TTRIARIDPDSG 206 (262)
T ss_pred ceeeecC--CcceEeeC-CceEEEecCHHHhhhcceEEEEECCeecccccc--eeeeccEEEEeeee-ecceEEEcCCCC
Confidence 4566666 34454444 233343333221 00111110 1111111 12234666644442 456777777644
Q ss_pred CcEEEEe----------cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 164 NFTRILT----------HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 164 ~~~~l~~----------~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
.....+. .......+||||.++..+++|++--.-..+..+.+++
T Consensus 207 rV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK~wp~lfEVk~~~ 260 (262)
T COG3823 207 RVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGKLWPLLFEVKLDE 260 (262)
T ss_pred cEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecCcCceeEEEEecC
Confidence 3333221 0223446899999999999999865555555555443
No 125
>KOG1446|consensus
Probab=95.81 E-value=2.1 Score=41.96 Aligned_cols=237 Identities=15% Similarity=0.107 Sum_probs=133.5
Q ss_pred CEEEEEe-cccEEEEEcC-CCceeecccCCcceEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952 17 PWLIFSN-KYYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL 93 (573)
Q Consensus 17 ~~l~~s~-~~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl 93 (573)
.+|+.+. ...|+.++.. |.+...+...-..+.-+-|-..... ||=+...+..|+-+++.....-..+...-..+.+|
T Consensus 27 ~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL 106 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSL 106 (311)
T ss_pred CEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEE
Confidence 4555544 4477777764 5554444332222333344444444 44444456678887775543333333334688899
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec---cCCCcEEEEe
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM---DGSNFTRILT 170 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l---dG~~~~~l~~ 170 (573)
.+-+.+ ..|.+-+..+.|..-++.-.....++.. ..+--+|+|| .|.+|.+-.+.. .|.-.++ |..-.+++.-
T Consensus 107 ~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~-~~~pi~AfDp-~GLifA~~~~~~-~IkLyD~Rs~dkgPF~tf~i 182 (311)
T KOG1446|consen 107 SVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNL-SGRPIAAFDP-EGLIFALANGSE-LIKLYDLRSFDKGPFTTFSI 182 (311)
T ss_pred EecCCC-CeEEecccCCeEEeeEecCCCCceEEec-CCCcceeECC-CCcEEEEecCCC-eEEEEEecccCCCCceeEcc
Confidence 999876 7888887777888888875544444432 3355678999 678877765432 5554443 3333333321
Q ss_pred cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEe-CCCCcEEEEEeCC-ccceeEEEee-eCCeEEEecCCCCceEEEec
Q psy952 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-LDGKHKHIVISGQ-KVPHVFALTL-FEDHIYWTDWNTKSINRADK 247 (573)
Q Consensus 171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~-~dG~~~~~l~~~~-~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~ 247 (573)
.......-+.|.+.+.++.|.++.. .+.|+.++ ++|.....+.... ...-|.+-++ -++..+.+-...++|..-+.
T Consensus 183 ~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 183 TDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred CCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc
Confidence 1233444467888877777776654 34444444 5676554443211 0223433333 35555556567788887777
Q ss_pred cCCcceEEEcc
Q psy952 248 FNGRDYRVLRN 258 (573)
Q Consensus 248 ~~g~~~~~l~~ 258 (573)
.+|..+.++..
T Consensus 262 ~tg~~v~~~~~ 272 (311)
T KOG1446|consen 262 ETGKKVAVLRG 272 (311)
T ss_pred CCCcEeeEecC
Confidence 88877766654
No 126
>PHA02713 hypothetical protein; Provisional
Probab=95.77 E-value=2.1 Score=47.16 Aligned_cols=210 Identities=7% Similarity=0.067 Sum_probs=104.9
Q ss_pred EEEEEcCCCceeecccCCc--ceEEEEEEcCCCEEEEEECC------CCeEEEEEcCCCcceEEEcCCCCCcc-eeEEee
Q psy952 27 VRNMSLDATQYSLVHQDLL--NVVAMDFHYKENRFYFADVA------AKTIYRSRVGSTEKERVIRHDSHGLE-GLAVDW 97 (573)
Q Consensus 27 I~~i~l~g~~~~~~~~~~~--~~~~v~~d~~~~~ly~~d~~------~~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~ 97 (573)
+.++++.......+.+... ...+++. .++.||++... ...++++++.......+. .+..|+ +.++-.
T Consensus 274 v~~yd~~~~~W~~l~~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~--~m~~~R~~~~~~~ 349 (557)
T PHA02713 274 ILVYNINTMEYSVISTIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELP--PMIKNRCRFSLAV 349 (557)
T ss_pred EEEEeCCCCeEEECCCCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCC--CCcchhhceeEEE
Confidence 5556665544433322111 1124443 37899998542 145788887655443322 222232 222233
Q ss_pred cCCcEEEEeCC-----CCeEEEEEcCCCceeEeccCCCCcc-eEEEeCCCceEEEEecCC--------------------
Q psy952 98 VGRKLYWLDRH-----SKQLDVAELDGTNRKTLKTAIQDPR-GITLHPGIGYVYFSSWNL-------------------- 151 (573)
Q Consensus 98 ~~~~LY~td~~-----~~~I~~~~ldg~~~~~l~~~~~~P~-~Iavdp~~g~LYwtd~~~-------------------- 151 (573)
.+++||+.-.. ...++++++....-..+. .+..|+ +.++-..+|.||+.-...
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~-~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP-DMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCCeEEECC-CCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccc
Confidence 57999998643 245888887654433322 222222 111112368999975221
Q ss_pred --cCeEEEEeccCCCcEEEEecCCCCCCC---ceEEEeccCCeEEEEeCCC------CeEEEEeCCC-CcEEEEEeCCcc
Q psy952 152 --QAYIGKIGMDGSNFTRILTHEDDIAWP---NALTLDYFTERLYWADAHL------DYIASVDLDG-KHKHIVISGQKV 219 (573)
Q Consensus 152 --~~~I~r~~ldG~~~~~l~~~~~~l~~P---~glaiD~~~~~LYw~D~~~------~~I~~~~~dG-~~~~~l~~~~~~ 219 (573)
...+++.++.-..=..+ ..+..| .++++ .+++||+.-... ..|+++++.. ..=+.+..-..-
T Consensus 429 ~~~~~ve~YDP~td~W~~v----~~m~~~r~~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETL----PNFWTGTIRPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred cccceEEEECCCCCeEeec----CCCCcccccCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 12455555543221111 222222 24443 378999985322 3477888776 232322221101
Q ss_pred ceeEEEeeeCCeEEEecCCCC--ceEEEec
Q psy952 220 PHVFALTLFEDHIYWTDWNTK--SINRADK 247 (573)
Q Consensus 220 ~~p~~ia~~~~~lywtd~~~~--~I~~~~~ 247 (573)
..-.++++.+++||++-...+ .|.+.|.
T Consensus 503 r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 503 LSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred cccceeEEECCEEEEEeeecceeehhhcCc
Confidence 123688889999999854333 3444443
No 127
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.76 E-value=0.03 Score=44.54 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=30.3
Q ss_pred CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
.+++..|+||++++..+.||+++...+.|..+..
T Consensus 50 a~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~ 83 (86)
T PF01731_consen 50 ASGFSFANGIAISPDKKYLYVASSLAHSIHVYKR 83 (86)
T ss_pred eccCCCCceEEEcCCCCEEEEEeccCCeEEEEEe
Confidence 3789999999999999999999999998887754
No 128
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=95.67 E-value=0.0055 Score=39.90 Aligned_cols=31 Identities=48% Similarity=1.070 Sum_probs=25.8
Q ss_pred CCCccCCccccCCCCccccCCCCceecCCCc
Q psy952 353 ETNQCGHKCVDTLTGYYCECNTGYKLLEDGK 383 (573)
Q Consensus 353 ~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~~ 383 (573)
++..|++.|.+..+++.|+|+.+|++..+++
T Consensus 4 ~NGgC~h~C~~~~g~~~C~C~~Gy~L~~D~~ 34 (36)
T PF14670_consen 4 NNGGCSHICVNTPGSYRCSCPPGYKLAEDGR 34 (36)
T ss_dssp GGGGSSSEEEEETTSEEEE-STTEEE-TTSS
T ss_pred CCCCcCCCCccCCCceEeECCCCCEECcCCC
Confidence 5678999999999999999999999988765
No 129
>KOG0268|consensus
Probab=95.63 E-value=0.26 Score=49.05 Aligned_cols=156 Identities=10% Similarity=0.099 Sum_probs=94.3
Q ss_pred CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~ 166 (573)
......+.+.++.-.|.-+-...+.|..+|+.......-+.-...+++|+..| +++.|++-. ....|+..+|--..+.
T Consensus 187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~a~-ED~nlY~~DmR~l~~p 264 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFVAAN-EDHNLYTYDMRNLSRP 264 (433)
T ss_pred CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-cccceeecc-ccccceehhhhhhccc
Confidence 33445566666666666666666778888875443322222334689999999 899998863 3566887777544433
Q ss_pred EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEE-Ee--cCCCCceE
Q psy952 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIY-WT--DWNTKSIN 243 (573)
Q Consensus 167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~ly-wt--d~~~~~I~ 243 (573)
+-+- ..-......+.+. ..|.=|++-+....|..+..+.+..+-++...+..+.+++.+--+.-| ++ |-++-+++
T Consensus 265 ~~v~-~dhvsAV~dVdfs-ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 265 LNVH-KDHVSAVMDVDFS-PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred chhh-cccceeEEEeccC-CCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeee
Confidence 3220 1111111233333 356667787788889999988777776666555789999998544333 33 33344444
Q ss_pred EEe
Q psy952 244 RAD 246 (573)
Q Consensus 244 ~~~ 246 (573)
+++
T Consensus 343 ka~ 345 (433)
T KOG0268|consen 343 KAK 345 (433)
T ss_pred ecc
Confidence 443
No 130
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.60 E-value=6 Score=45.71 Aligned_cols=196 Identities=11% Similarity=0.007 Sum_probs=107.1
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-----cc--eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-----EK--ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-----~~--~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
..+.+|+|++.++ ++.+-...+.|..+++... .. ..+...+...+.++++.+..+.+..+-...+.|.+.++
T Consensus 484 ~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 484 NLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred CcEEEEEECCCCC-EEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 3478899997554 4555556677888776431 10 01111112345566665544555555556788888888
Q ss_pred CCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952 118 DGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 118 dg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~ 196 (573)
..... ..+........+|+++|..+.++++-. ....|...++........+ .. ......+.+.+..+.++++-..
T Consensus 563 ~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~Dg~v~iWd~~~~~~~~~~--~~-~~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 563 ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-DDGSVKLWSINQGVSIGTI--KT-KANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-CCCEEEEEECCCCcEEEEE--ec-CCCeEEEEEeCCCCCEEEEEeC
Confidence 75433 333334455789999986777776653 3556666666533322222 11 1233455554455666666667
Q ss_pred CCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 197 LDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 197 ~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
.+.|...++..... .....+. ......|.+..+..+++-...+.|...+
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h-~~~V~~v~f~~~~~lvs~s~D~~ikiWd 688 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGH-SKTVSYVRFVDSSTLVSSSTDNTLKLWD 688 (793)
T ss_pred CCeEEEEECCCCCccceEecCC-CCCEEEEEEeCCCEEEEEECCCEEEEEe
Confidence 78888888754332 1112221 1234455555555555544555555444
No 131
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=95.49 E-value=0.12 Score=55.94 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=46.9
Q ss_pred cCCcceEEEEEEcCCCEEEEEECCC-------------------CeEEEEEcCCC-------cceEEEc-----------
Q psy952 42 QDLLNVVAMDFHYKENRFYFADVAA-------------------KTIYRSRVGST-------EKERVIR----------- 84 (573)
Q Consensus 42 ~~~~~~~~v~~d~~~~~ly~~d~~~-------------------~~I~~~~~~g~-------~~~~i~~----------- 84 (573)
..+.++.+|++++.++.||++-... +.|+|+...+. ..+.++.
T Consensus 347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~ 426 (524)
T PF05787_consen 347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG 426 (524)
T ss_pred ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence 3567799999999999999986433 48999998765 2233222
Q ss_pred ------CCCCCcceeEEeecCCcEEEE-eCC
Q psy952 85 ------HDSHGLEGLAVDWVGRKLYWL-DRH 108 (573)
Q Consensus 85 ------~~~~~p~glavD~~~~~LY~t-d~~ 108 (573)
..+..|.+|+||.. ++||+. |..
T Consensus 427 ~~~~~~~~f~sPDNL~~d~~-G~LwI~eD~~ 456 (524)
T PF05787_consen 427 SNKCDDNGFASPDNLAFDPD-GNLWIQEDGG 456 (524)
T ss_pred cCcccCCCcCCCCceEECCC-CCEEEEeCCC
Confidence 12679999999985 556664 443
No 132
>KOG4441|consensus
Probab=95.36 E-value=1.7 Score=47.86 Aligned_cols=183 Identities=10% Similarity=0.108 Sum_probs=112.3
Q ss_pred eEEEEEEcCCCEEEEEECCC------CeEEEEEcCCCcceEEEcCCCCCc-ceeEEeecCCcEEEEeCCC-----CeEEE
Q psy952 47 VVAMDFHYKENRFYFADVAA------KTIYRSRVGSTEKERVIRHDSHGL-EGLAVDWVGRKLYWLDRHS-----KQLDV 114 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~------~~I~~~~~~g~~~~~i~~~~~~~p-~glavD~~~~~LY~td~~~-----~~I~~ 114 (573)
..++++- ++.||++--.+ ..+++++........+. .+..+ .++++-...+.||..-... ..|++
T Consensus 325 ~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~ 400 (571)
T KOG4441|consen 325 RVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVEC 400 (571)
T ss_pred cccEEEE--CCEEEEEccccCCCcccceEEEecCCCCceeccC--CccCccccceeEEECCEEEEEeccccccccccEEE
Confidence 3455554 78999986544 46788888766554432 22222 2445555789999986433 46888
Q ss_pred EEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCC
Q psy952 115 AELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTE 188 (573)
Q Consensus 115 ~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~ 188 (573)
.+.....-..+..-...-.+.++-..+|.||.+-... -.++++.+.....=+.+ ..+..+. ++.+-..++
T Consensus 401 YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~----~~M~~~R~~~g~a~~~~ 476 (571)
T KOG4441|consen 401 YDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI----APMNTRRSGFGVAVLNG 476 (571)
T ss_pred ecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeec----CCcccccccceEEEECC
Confidence 8888766555543333334555555689999986322 24677776654432222 2333332 333444599
Q ss_pred eEEEEeCC-----CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952 189 RLYWADAH-----LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW 237 (573)
Q Consensus 189 ~LYw~D~~-----~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~ 237 (573)
+||+.-.. ...|+++++....-..+..-..-....|+++.++.||+.-.
T Consensus 477 ~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 477 KIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred EEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEec
Confidence 99998443 34588999887766666432213345788999999999854
No 133
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.35 E-value=7.3 Score=45.04 Aligned_cols=156 Identities=3% Similarity=-0.065 Sum_probs=90.5
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
..+.+++|++..+.+..+-...+.|..+++........+......+.+|++.+..+.++++-...+.|.+.++.......
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 44678888876555556666678888888875443333333335677888876677888888888899999886443222
Q ss_pred eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc--EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 125 LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF--TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 125 l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~--~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
.+........+++.+..+.++.+-. ..+.|...++..... ..+. ..-.....+.+. .+..+++-...+.|..
T Consensus 613 ~~~~~~~v~~v~~~~~~g~~latgs-~dg~I~iwD~~~~~~~~~~~~---~h~~~V~~v~f~--~~~~lvs~s~D~~iki 686 (793)
T PLN00181 613 TIKTKANICCVQFPSESGRSLAFGS-ADHKVYYYDLRNPKLPLCTMI---GHSKTVSYVRFV--DSSTLVSSSTDNTLKL 686 (793)
T ss_pred EEecCCCeEEEEEeCCCCCEEEEEe-CCCeEEEEECCCCCccceEec---CCCCCEEEEEEe--CCCEEEEEECCCEEEE
Confidence 2222234566666655666666553 355677666643321 1222 111122345553 3444445455666666
Q ss_pred EeCC
Q psy952 203 VDLD 206 (573)
Q Consensus 203 ~~~d 206 (573)
.++.
T Consensus 687 Wd~~ 690 (793)
T PLN00181 687 WDLS 690 (793)
T ss_pred EeCC
Confidence 6654
No 134
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=95.25 E-value=2.5 Score=40.42 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=62.9
Q ss_pred EeCCCCeEEEEEcCCCce--eEec-------cCCCCcceEEEe--CCCceEEEEecCCcCeEEEEec-c---CCCcEEEE
Q psy952 105 LDRHSKQLDVAELDGTNR--KTLK-------TAIQDPRGITLH--PGIGYVYFSSWNLQAYIGKIGM-D---GSNFTRIL 169 (573)
Q Consensus 105 td~~~~~I~~~~ldg~~~--~~l~-------~~~~~P~~Iavd--p~~g~LYwtd~~~~~~I~r~~l-d---G~~~~~l~ 169 (573)
+|..+..|.++..++..+ +.+. +++..|.|+++. |..|-+|+--.+..+.|....+ | |.....++
T Consensus 119 SdR~~~~i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~v 198 (364)
T COG4247 119 SDRQNDKIVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLV 198 (364)
T ss_pred ccccCCeEEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceee
Confidence 345566777776665432 2222 466779999985 5556566544344566665554 2 33333333
Q ss_pred ecCCCCCCC---ceEEEeccCCeEEEEeCCCCeEEEEeCC---CCcEEEEEe
Q psy952 170 THEDDIAWP---NALTLDYFTERLYWADAHLDYIASVDLD---GKHKHIVIS 215 (573)
Q Consensus 170 ~~~~~l~~P---~glaiD~~~~~LYw~D~~~~~I~~~~~d---G~~~~~l~~ 215 (573)
..+..| .|+..|-..+.||+++.. -.||.+..+ |...++|.+
T Consensus 199 ---R~fk~~tQTEG~VaDdEtG~LYIaeEd-vaiWK~~Aep~~G~~g~~idr 246 (364)
T COG4247 199 ---RQFKIPTQTEGMVADDETGFLYIAEED-VAIWKYEAEPNRGNTGRLIDR 246 (364)
T ss_pred ---EeeecCCcccceeeccccceEEEeecc-ceeeecccCCCCCCccchhhh
Confidence 233333 599999999999999753 457776654 444454443
No 135
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.23 E-value=3 Score=39.87 Aligned_cols=175 Identities=13% Similarity=0.084 Sum_probs=81.9
Q ss_pred CEEEEE-ecccEEEEEcCCCce--eeccc-CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEE-EcC--C--
Q psy952 17 PWLIFS-NKYYVRNMSLDATQY--SLVHQ-DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERV-IRH--D-- 86 (573)
Q Consensus 17 ~~l~~s-~~~~I~~i~l~g~~~--~~~~~-~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i-~~~--~-- 86 (573)
..|+++ ..+.|+.++....+. +.... .+..+ ... ..+.||+.... +.|+.+++. |...-.+ ... .
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~~~--~~~~v~v~~~~-~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--PVV--DGGRVYVGTSD-GSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--EEE--ETTEEEEEETT-SEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--eee--cccccccccce-eeeEecccCCcceeeeeccccccccc
Confidence 455555 567888888743332 11111 11222 122 36777777633 378888743 3332221 111 1
Q ss_pred CCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEec-cC--CCC--------cceEEEeCCCceEEEEecCCcCe
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLK-TA--IQD--------PRGITLHPGIGYVYFSSWNLQAY 154 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~-~~--~~~--------P~~Iavdp~~g~LYwtd~~~~~~ 154 (573)
+..+..++++ ++.||+... .+.|..+++. |..+-... .. ... ...+.++ .+.||++... ..
T Consensus 112 ~~~~~~~~~~--~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~--g~ 184 (238)
T PF13360_consen 112 VRSSSSPAVD--GDRLYVGTS-SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS--DGRVYVSSGD--GR 184 (238)
T ss_dssp TB--SEEEEE--TTEEEEEET-CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC--TTEEEEECCT--SS
T ss_pred cccccCceEe--cCEEEEEec-cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE--CCEEEEEcCC--Ce
Confidence 1223334443 677777765 5678888865 43322221 11 000 1122222 4577777632 22
Q ss_pred EEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952 155 IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 155 I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
+..+++....+. .. ..+..+.++ ....++.||+.+ ..++|..+++....
T Consensus 185 ~~~~d~~tg~~~--w~--~~~~~~~~~-~~~~~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 185 VVAVDLATGEKL--WS--KPISGIYSL-PSVDGGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp EEEEETTTTEEE--EE--ECSS-ECEC-EECCCTEEEEEE-TTTEEEEEETTTTE
T ss_pred EEEEECCCCCEE--EE--ecCCCccCC-ceeeCCEEEEEe-CCCEEEEEECCCCC
Confidence 333344433322 21 123333332 233577777777 56777777765543
No 136
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.13 E-value=1.1 Score=43.64 Aligned_cols=146 Identities=14% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcce-EEEcCC--C----------CCcceeEEeecCCc-EEEEeCCCCeEEEEEcCCCc
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKE-RVIRHD--S----------HGLEGLAVDWVGRK-LYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~--~----------~~p~glavD~~~~~-LY~td~~~~~I~~~~ldg~~ 121 (573)
++.||+--.....|.|+++...... .....+ . ..-..+|+|..+=. ||-+....+.|.+..||-..
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~t 157 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPET 157 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCccc
Confidence 6889999888899999999876544 222111 1 12256899843211 34445556679888888655
Q ss_pred eeEec---cCCCCcceEEEeCCCceEEEEecCCc--CeE-EEEecc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952 122 RKTLK---TAIQDPRGITLHPGIGYVYFSSWNLQ--AYI-GKIGMD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 122 ~~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~--~~I-~r~~ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D 194 (573)
..+.. +.+..+..-..--.=|.||.++.... .+| ...++. +....+-+.-.........|..+|.+++||.=|
T Consensus 158 L~v~~tw~T~~~k~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 158 LSVEQTWNTSYPKRSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred CceEEEEEeccCchhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 44432 33433321111112589999986532 233 233333 211111110023334456799999999999977
Q ss_pred CCCCeEE
Q psy952 195 AHLDYIA 201 (573)
Q Consensus 195 ~~~~~I~ 201 (573)
.+.-.++
T Consensus 238 ~G~~v~Y 244 (250)
T PF02191_consen 238 NGYQVTY 244 (250)
T ss_pred CCeEEEE
Confidence 5443333
No 137
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.12 E-value=1.7 Score=44.77 Aligned_cols=160 Identities=10% Similarity=0.136 Sum_probs=90.1
Q ss_pred cEEEEEcCCCcee-ec-----ccCCcceEEEEEEcCCCEEEEE--ECCCC--eEEEEEcCCCcceEEEcC---C-CCCcc
Q psy952 26 YVRNMSLDATQYS-LV-----HQDLLNVVAMDFHYKENRFYFA--DVAAK--TIYRSRVGSTEKERVIRH---D-SHGLE 91 (573)
Q Consensus 26 ~I~~i~l~g~~~~-~~-----~~~~~~~~~v~~d~~~~~ly~~--d~~~~--~I~~~~~~g~~~~~i~~~---~-~~~p~ 91 (573)
.|..+++.+.... +. ......+..+.|...+++|++. +...+ .|..+++..+..++++.. + +....
T Consensus 159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~ 238 (353)
T PF00930_consen 159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD 238 (353)
T ss_dssp EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence 4555666654432 11 1233346677787666645544 44443 456666655444444322 1 22223
Q ss_pred eeEEe-ecCCcEEEEeCCC--CeEEEEEcCCCceeEeccCCCCc-ceEEEeCCCceEEEEecC---CcCeEEEEecc-CC
Q psy952 92 GLAVD-WVGRKLYWLDRHS--KQLDVAELDGTNRKTLKTAIQDP-RGITLHPGIGYVYFSSWN---LQAYIGKIGMD-GS 163 (573)
Q Consensus 92 glavD-~~~~~LY~td~~~--~~I~~~~ldg~~~~~l~~~~~~P-~~Iavdp~~g~LYwtd~~---~~~~I~r~~ld-G~ 163 (573)
.+.+- ..++.++|.-... .+|..++++|...+.|..+-... .-+++|+.++.||++-.. ....|++++++ |.
T Consensus 239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~ 318 (353)
T PF00930_consen 239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG 318 (353)
T ss_dssp EEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT
T ss_pred ccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC
Confidence 33332 3455555554333 48999999998877665554444 357889999999999754 25689999999 66
Q ss_pred CcEEEEecCCCCCCCc-eEEEeccCCe
Q psy952 164 NFTRILTHEDDIAWPN-ALTLDYFTER 189 (573)
Q Consensus 164 ~~~~l~~~~~~l~~P~-glaiD~~~~~ 189 (573)
..+.|. ...... .+++.+.++.
T Consensus 319 ~~~~LT----~~~~~~~~~~~Spdg~y 341 (353)
T PF00930_consen 319 EPKCLT----CEDGDHYSASFSPDGKY 341 (353)
T ss_dssp EEEESS----TTSSTTEEEEE-TTSSE
T ss_pred CeEecc----CCCCCceEEEECCCCCE
Confidence 655543 222233 6677654443
No 138
>KOG0289|consensus
Probab=95.02 E-value=4.9 Score=41.25 Aligned_cols=197 Identities=12% Similarity=0.042 Sum_probs=113.7
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR 122 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~ 122 (573)
-..+.++..++.+.+|.|++...--++.---.|....++... .--....++|.+ .+.||-+-...+.|.+.++.....
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc
Confidence 344678999999999999876654444333344443333221 112356677875 678999988888888888865442
Q ss_pred e-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952 123 K-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 123 ~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I 200 (573)
. .+-..-.....|++.. +||...+... ...|.--+|.- .+.+++. .......+.+.+|..+..|-.+ ...-+|
T Consensus 382 ~a~Fpght~~vk~i~FsE-NGY~Lat~ad-d~~V~lwDLRKl~n~kt~~--l~~~~~v~s~~fD~SGt~L~~~-g~~l~V 456 (506)
T KOG0289|consen 382 VAKFPGHTGPVKAISFSE-NGYWLATAAD-DGSVKLWDLRKLKNFKTIQ--LDEKKEVNSLSFDQSGTYLGIA-GSDLQV 456 (506)
T ss_pred cccCCCCCCceeEEEecc-CceEEEEEec-CCeEEEEEehhhcccceee--ccccccceeEEEcCCCCeEEee-cceeEE
Confidence 2 2223344478899986 7877776633 33354444432 1344444 3444456789999777666655 333355
Q ss_pred EEEeCCCCcEEEEEe-CCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 201 ASVDLDGKHKHIVIS-GQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 201 ~~~~~dG~~~~~l~~-~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
+.+......=+.+.. ........++.+-+...|..+....+++++-
T Consensus 457 y~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 457 YICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred EEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 555543333222222 1112234566666666777777777776553
No 139
>KOG4328|consensus
Probab=94.99 E-value=1.8 Score=44.60 Aligned_cols=157 Identities=16% Similarity=0.148 Sum_probs=90.8
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCcceeEEeecCCcEEEEeCCCCeEEEEEc--CCCc
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL--DGTN 121 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p~glavD~~~~~LY~td~~~~~I~~~~l--dg~~ 121 (573)
.+.+|.|.+.+-.-+++-...|.|...++++...+.++.. .-....++.+-...+.+|+.+... ...++++ +|+.
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSE 314 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCcc
Confidence 3567777776665555556667888888877666655544 223445666666778888887543 5555555 4443
Q ss_pred eeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEe-ccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952 122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIG-MDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY 199 (573)
Q Consensus 122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~-ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~ 199 (573)
...+.-.-....+|+++|...+++.|-.-+ ..+|+=+. |.+.... ++.....-...++..+.|.+++|. +....+.
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp-~lst~~HrrsV~sAyFSPs~gtl~-TT~~D~~ 392 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP-FLSTLPHRRSVNSAYFSPSGGTLL-TTCQDNE 392 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc-ceecccccceeeeeEEcCCCCceE-eeccCCc
Confidence 333333334789999999988887775332 33465332 2232211 221012222335666777788844 4445566
Q ss_pred EEEEeC
Q psy952 200 IASVDL 205 (573)
Q Consensus 200 I~~~~~ 205 (573)
|..++.
T Consensus 393 IRv~ds 398 (498)
T KOG4328|consen 393 IRVFDS 398 (498)
T ss_pred eEEeec
Confidence 666554
No 140
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.94 E-value=1.9 Score=44.21 Aligned_cols=157 Identities=13% Similarity=0.184 Sum_probs=76.7
Q ss_pred CCCE-EEEEECC-CCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc--CCC
Q psy952 55 KENR-FYFADVA-AKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQ 130 (573)
Q Consensus 55 ~~~~-ly~~d~~-~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~--~~~ 130 (573)
.+++ ||.++.. ...++.++|++...+.|....-....|..+-...+.||+.... ..+.+++|+....++|.. ...
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-~~l~~vdL~T~e~~~vy~~p~~~ 124 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-RSLRRVDLDTLEERVVYEVPDDW 124 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-TEEEEEETTT--EEEEEE--TTE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-CeEEEEECCcCcEEEEEECCccc
Confidence 3444 5555543 4579999998877766654322233356666778888776533 578999999877666553 222
Q ss_pred CcceEEEeCCCceEEEE------------ecC---------CcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC-
Q psy952 131 DPRGITLHPGIGYVYFS------------SWN---------LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE- 188 (573)
Q Consensus 131 ~P~~Iavdp~~g~LYwt------------d~~---------~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~- 188 (573)
...+..+-...+.+++. +|. ...+|.++++.+...++++. + -.|-.-+-+.|.+.
T Consensus 125 ~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~-~~wlgH~~fsP~dp~ 201 (386)
T PF14583_consen 125 KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--D-TDWLGHVQFSPTDPT 201 (386)
T ss_dssp EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--E-SS-EEEEEEETTEEE
T ss_pred ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--c-CccccCcccCCCCCC
Confidence 23333332223333322 110 12479999999888888873 2 22223333333332
Q ss_pred eEEEEe-----CCCCeEEEEeCCCCcEEEEEe
Q psy952 189 RLYWAD-----AHLDYIASVDLDGKHKHIVIS 215 (573)
Q Consensus 189 ~LYw~D-----~~~~~I~~~~~dG~~~~~l~~ 215 (573)
.|-++- .-..+|+.++.||++.+.+..
T Consensus 202 li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 202 LIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp EEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred EEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 223322 123589999999999877654
No 141
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.92 E-value=6 Score=41.71 Aligned_cols=193 Identities=12% Similarity=0.143 Sum_probs=111.4
Q ss_pred EEEEEcCCCEEEEE-ECCC---CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC--cEEEEeCC----------CCeE
Q psy952 49 AMDFHYKENRFYFA-DVAA---KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR--KLYWLDRH----------SKQL 112 (573)
Q Consensus 49 ~v~~d~~~~~ly~~-d~~~---~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~--~LY~td~~----------~~~I 112 (573)
++.+.+.+++|-++ +... ..|+..++.++. ++...+..+.+-.+-|..+ .||++... ...|
T Consensus 128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~---~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v 204 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK---FLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV 204 (414)
T ss_dssp EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE---EEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred eeeECCCCCEEEEEecCCCCceEEEEEEECCCCc---CcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence 66777778877776 3332 257888887652 2222333333322445444 67777632 3357
Q ss_pred EEEEcCCCcee--EeccCCCCcc---eEEEeCCCceEEEEecCC-c-CeEEEEeccCC-----CcEEEEecCCCCCCCce
Q psy952 113 DVAELDGTNRK--TLKTAIQDPR---GITLHPGIGYVYFSSWNL-Q-AYIGKIGMDGS-----NFTRILTHEDDIAWPNA 180 (573)
Q Consensus 113 ~~~~ldg~~~~--~l~~~~~~P~---~Iavdp~~g~LYwtd~~~-~-~~I~r~~ldG~-----~~~~l~~~~~~l~~P~g 180 (573)
++..+...... .|......+. ++.+.+..++|+++-... . ..|+.++++.. ..+.|. .... ...
T Consensus 205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~---~~~~-~~~ 280 (414)
T PF02897_consen 205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS---PRED-GVE 280 (414)
T ss_dssp EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE---ESSS-S-E
T ss_pred EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe---CCCC-ceE
Confidence 77788765544 4444444444 788899889999875443 3 57888888764 333333 2221 122
Q ss_pred EEEeccCCeEEEE-eC--CCCeEEEEeCCCCc---EE-EEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEecc
Q psy952 181 LTLDYFTERLYWA-DA--HLDYIASVDLDGKH---KH-IVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKF 248 (573)
Q Consensus 181 laiD~~~~~LYw~-D~--~~~~I~~~~~dG~~---~~-~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~ 248 (573)
-.++..++.+|+. +. ..++|.+++++... .. +|+....-....++.+++++|++....+ .+|...+..
T Consensus 281 ~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 281 YYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 2345568888874 32 35689999988655 23 5554331236788889999999886554 356666644
No 142
>KOG0268|consensus
Probab=94.90 E-value=0.62 Score=46.45 Aligned_cols=235 Identities=12% Similarity=0.092 Sum_probs=129.4
Q ss_pred CCCceeeCCCCCC-EEEEEe--cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952 5 DESTCKRRDSIKP-WLIFSN--KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE 80 (573)
Q Consensus 5 dg~~C~~~~~~~~-~l~~s~--~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 80 (573)
||..|-+.. +.. ..+++. .+.|+..+|...... .+....+.+.||.++. +..+++.| ...|.++.++|....
T Consensus 67 dGV~~lakh-p~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~-~~~~tvgd--DKtvK~wk~~~~p~~ 142 (433)
T KOG0268|consen 67 DGVSCLAKH-PNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ-TSFFTVGD--DKTVKQWKIDGPPLH 142 (433)
T ss_pred cccchhhcC-cchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc-cceEEecC--CcceeeeeccCCcce
Confidence 788898754 333 333332 467888888765432 2223345578999985 55555554 446777777776555
Q ss_pred EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952 81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG 159 (573)
Q Consensus 81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ 159 (573)
+++... ...||.-.| .+.+|.|-.. .|...++.-.... .+-.+......|.+.|..-.|.-+- +....|...+
T Consensus 143 tilg~s--~~~gIdh~~-~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~-~sDrsIvLyD 216 (433)
T KOG0268|consen 143 TILGKS--VYLGIDHHR-KNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC-ASDRSIVLYD 216 (433)
T ss_pred eeeccc--ccccccccc-ccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeee-ccCCceEEEe
Confidence 555432 444554443 3456666533 3444444322221 1212333345666666554454443 2344566665
Q ss_pred ccCCC--cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEec
Q psy952 160 MDGSN--FTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTD 236 (573)
Q Consensus 160 ldG~~--~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd 236 (573)
+--.. .++++ -..+|+|+..| +...|++-.....++.+++.-..+-+-+..........+++ .-|.=|++-
T Consensus 217 ~R~~~Pl~KVi~-----~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsg 290 (433)
T KOG0268|consen 217 LRQASPLKKVIL-----TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSG 290 (433)
T ss_pred cccCCccceeee-----eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccc
Confidence 54322 22222 23689999998 88888887777788888775443322221111233344444 235567777
Q ss_pred CCCCceEEEeccCCcceEE
Q psy952 237 WNTKSINRADKFNGRDYRV 255 (573)
Q Consensus 237 ~~~~~I~~~~~~~g~~~~~ 255 (573)
....+|..+....|..+.+
T Consensus 291 syDksIRIf~~~~~~SRdi 309 (433)
T KOG0268|consen 291 SYDKSIRIFPVNHGHSRDI 309 (433)
T ss_pred cccceEEEeecCCCcchhh
Confidence 7777777666555554443
No 143
>KOG4378|consensus
Probab=94.87 E-value=2.3 Score=44.21 Aligned_cols=198 Identities=13% Similarity=0.127 Sum_probs=116.0
Q ss_pred CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCc-eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952 5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQ-YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV 82 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~-~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i 82 (573)
|...|.+......|++-.. .+.|...+|.... ...+......+.+|+|...+.+|--+. ..+-|....+......+-
T Consensus 80 d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs-~gGdiiih~~~t~~~tt~ 158 (673)
T KOG4378|consen 80 DNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS-DGGDIIIHGTKTKQKTTT 158 (673)
T ss_pred chHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec-cCCcEEEEecccCccccc
Confidence 3445665443333333222 3444555554321 122333345688999986655443332 234455555544333322
Q ss_pred EcCC-CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952 83 IRHD-SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIG 159 (573)
Q Consensus 83 ~~~~-~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ 159 (573)
+..+ -..++-|.+.+..+.|..+-+..|.|.+.+..|....--. ..-.--+||.+.|.+..|+++- |-..+|...+
T Consensus 159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV-G~Dkki~~yD 237 (673)
T KOG4378|consen 159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV-GYDKKINIYD 237 (673)
T ss_pred eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe-cccceEEEee
Confidence 2222 2345567778888888888888899999888886643322 2333468999999999998886 4566777776
Q ss_pred ccCCCc-EEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952 160 MDGSNF-TRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHK 210 (573)
Q Consensus 160 ldG~~~-~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~ 210 (573)
...... ..|+ ...| ..+++- +.+.+..+-...++|+.+++.+...
T Consensus 238 ~~s~~s~~~l~-----y~~Plstvaf~-~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 238 IRSQASTDRLT-----YSHPLSTVAFS-ECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cccccccceee-----ecCCcceeeec-CCceEEEeecCCceEEEEecccCCC
Confidence 543221 1222 1233 466665 4666667777788999999988654
No 144
>PTZ00420 coronin; Provisional
Probab=94.86 E-value=7.6 Score=42.64 Aligned_cols=118 Identities=5% Similarity=0.037 Sum_probs=75.8
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ce------EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEE
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KE------RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA 115 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~------~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~ 115 (573)
...+..|+|.+..+.++++-...+.|..+++.... .. ..+......+..|++.+.+..|+.+-...+.|.+.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 34578999998766677777777888888875321 11 12222235678899988777777776677889999
Q ss_pred EcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 116 ELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 116 ~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
++........+........|+++|. |.++.+.. ....|...++...
T Consensus 154 Dl~tg~~~~~i~~~~~V~Slswspd-G~lLat~s-~D~~IrIwD~Rsg 199 (568)
T PTZ00420 154 DIENEKRAFQINMPKKLSSLKWNIK-GNLLSGTC-VGKHMHIIDPRKQ 199 (568)
T ss_pred ECCCCcEEEEEecCCcEEEEEECCC-CCEEEEEe-cCCEEEEEECCCC
Confidence 9875543222223345788999995 55555442 2455666666543
No 145
>KOG2048|consensus
Probab=94.83 E-value=4.8 Score=43.53 Aligned_cols=201 Identities=11% Similarity=0.135 Sum_probs=120.3
Q ss_pred CCCCCceeeCCCCCCEEEEEe--cccEEEEEcCCCceeeccc----CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952 3 GWDESTCKRRDSIKPWLIFSN--KYYVRNMSLDATQYSLVHQ----DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76 (573)
Q Consensus 3 g~dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~~~~~~----~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g 76 (573)
+...-+|.+.......|.++. +-.|+++..++......+. .......+.|-...++||++......+..+.+++
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ 460 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELET 460 (691)
T ss_pred CccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecC
Confidence 344566776653344566665 4567777776632211111 1223456667767888888877777788888876
Q ss_pred CcceEE---EcC-CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCC-CcceEEEe-CCCceEEEEecC
Q psy952 77 TEKERV---IRH-DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ-DPRGITLH-PGIGYVYFSSWN 150 (573)
Q Consensus 77 ~~~~~i---~~~-~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~-~P~~Iavd-p~~g~LYwtd~~ 150 (573)
...+.+ ..+ ....+.-|++.+.+++|-+++ ..+.|.+++|.+...+.|...+. ..++.++. +..+.|-++..
T Consensus 461 ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats- 538 (691)
T KOG2048|consen 461 PSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-TRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATS- 538 (691)
T ss_pred cchhhhhccccccCCCcceeEEEcCCCCEEEEEe-ccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEec-
Confidence 433322 222 234667788888888888887 67899999999888777764433 34566666 44566766663
Q ss_pred CcCeEEEEeccCCCcEEEEec---------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 151 LQAYIGKIGMDGSNFTRILTH---------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 151 ~~~~I~r~~ldG~~~~~l~~~---------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
+..++-.++..++....... .+-...-.|+.+|+.+...+|.= ..+.+..++.++
T Consensus 539 -~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n~s~~~~~-~a~w~~~id~~~ 602 (691)
T KOG2048|consen 539 -NNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKNSSRFIVY-DAHWSCLIDFSL 602 (691)
T ss_pred -CCeEEEEecchhhhhhhhhccccccccChhhcCCCCceEEeCCCCccEEEEE-cCcEEEEEecCC
Confidence 45666666633221111100 11122336999997777666653 345566666665
No 146
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.82 E-value=3.8 Score=42.24 Aligned_cols=93 Identities=15% Similarity=0.188 Sum_probs=57.7
Q ss_pred cceEEEe--CCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC----CCeEEEEeC
Q psy952 132 PRGITLH--PGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH----LDYIASVDL 205 (573)
Q Consensus 132 P~~Iavd--p~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~----~~~I~~~~~ 205 (573)
...+.+- ...++|++++...-.+|+.++++|...+.|. ......-.-+.+|..+++||++-.. ...|+++++
T Consensus 237 ~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT--~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 237 YDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLT--SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS---SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred ecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccc--cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 3445443 3344555555333568999999998765443 2322222357889999999998765 458999999
Q ss_pred C-CCcEEEEEeCCccceeEEEeee
Q psy952 206 D-GKHKHIVISGQKVPHVFALTLF 228 (573)
Q Consensus 206 d-G~~~~~l~~~~~~~~p~~ia~~ 228 (573)
+ |...+.|.... ..+ +.+++.
T Consensus 315 ~~~~~~~~LT~~~-~~~-~~~~~S 336 (353)
T PF00930_consen 315 DSGGEPKCLTCED-GDH-YSASFS 336 (353)
T ss_dssp TETTEEEESSTTS-STT-EEEEE-
T ss_pred CCCCCeEeccCCC-CCc-eEEEEC
Confidence 9 77776665543 233 455553
No 147
>KOG0318|consensus
Probab=94.81 E-value=6.3 Score=41.48 Aligned_cols=188 Identities=12% Similarity=0.083 Sum_probs=109.0
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~ 121 (573)
..+.+.+|++.+.+..||=.+ ..+.|...+...+....+. ...-..+.+|+... .+.||- -...+++.+.++.+..
T Consensus 319 HnK~ITaLtv~~d~~~i~Sgs-yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~-~~~~~t-~g~Dd~l~~~~~~~~~ 395 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIYSGS-YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE-SGELFT-IGWDDTLRVISLKDNG 395 (603)
T ss_pred cccceeEEEEcCCCCEEEeec-cCceEEEEecCCccccccccccccceEEEEeecC-CCcEEE-EecCCeEEEEecccCc
Confidence 345688999998776666554 5678888887654433343 22235778888763 355544 4456788888875433
Q ss_pred e--eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952 122 R--KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY 199 (573)
Q Consensus 122 ~--~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~ 199 (573)
. ...+.-..+|.+||+.+..+.+.++..+ .|.... +... ...+ .-...|.++|+.+....+-+. ...++
T Consensus 396 ~t~~~~~~lg~QP~~lav~~d~~~avv~~~~---~iv~l~-~~~~-~~~~---~~~y~~s~vAv~~~~~~vaVG-G~Dgk 466 (603)
T KOG0318|consen 396 YTKSEVVKLGSQPKGLAVLSDGGTAVVACIS---DIVLLQ-DQTK-VSSI---PIGYESSAVAVSPDGSEVAVG-GQDGK 466 (603)
T ss_pred ccccceeecCCCceeEEEcCCCCEEEEEecC---cEEEEe-cCCc-ceee---ccccccceEEEcCCCCEEEEe-cccce
Confidence 2 2233455679999999977788777632 233322 1111 1111 234568899998766555443 34567
Q ss_pred EEEEeCCCCcEEEEEe-CCccceeEEEeee--CCeEEEecCCCCce
Q psy952 200 IASVDLDGKHKHIVIS-GQKVPHVFALTLF--EDHIYWTDWNTKSI 242 (573)
Q Consensus 200 I~~~~~dG~~~~~l~~-~~~~~~p~~ia~~--~~~lywtd~~~~~I 242 (573)
|..+.+.|........ ......+..|++- +.+|-.+|.....|
T Consensus 467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv 512 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVV 512 (603)
T ss_pred EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEE
Confidence 8888888865432221 1112345566663 34455556554433
No 148
>KOG2397|consensus
Probab=94.78 E-value=0.034 Score=57.41 Aligned_cols=44 Identities=34% Similarity=0.598 Sum_probs=34.3
Q ss_pred CcCCCceeeCCCC---ceecCCcCcCCCCCCCCCCCCCCC--CCCCCCCC
Q psy952 524 TCPPHHLKCANTN---ICVEPYWLCDGDNDCGDMSDEDPL--HCQQRTCP 568 (573)
Q Consensus 524 ~C~~~~f~C~~~~---~Ci~~~~~Cdg~~dC~d~sDe~~~--~c~~~~c~ 568 (573)
.|..+.|+|.|.+ .=||.+.+=||+-||-|||||... .|++ +|.
T Consensus 77 ACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c~n-tC~ 125 (480)
T KOG2397|consen 77 ACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDCPN-TCI 125 (480)
T ss_pred cCCCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCCcc-hHH
Confidence 4567889997642 578999999999999999999865 5654 453
No 149
>KOG3509|consensus
Probab=94.68 E-value=0.036 Score=62.63 Aligned_cols=106 Identities=31% Similarity=0.633 Sum_probs=84.5
Q ss_pred ccCCCcccCCCCCCCCCCCCCCCccCCcCCCCCCcCCCCCCCccccCCccccCCCCCCCCCCCCCCCCCCCCCCCCccCC
Q psy952 423 CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNG 502 (573)
Q Consensus 423 ci~~~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d~sDe~~~~C~~c~~~~~Cd~ 502 (573)
|......|++..+|.+.+|+.+..+....+.+.+++|. ++++.-..+.||....|..++++ .+|.
T Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~---------- 67 (964)
T KOG3509|consen 3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCN---NPRCVQPEALLDADSTCGPNSTP--SGCN---------- 67 (964)
T ss_pred hhhhhhhhccchhhHhhcccCCCccccccCCcchhccC---CccccCchhhhccccccCCCCCc--CCcc----------
Confidence 55667789999999999999876666677888999998 67888888899999889888755 2220
Q ss_pred CCCCCCCCCCcccccCCCCCCCcCCCceeeCCCCceecCCcCcCCCCCCCCCCCCC
Q psy952 503 VNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558 (573)
Q Consensus 503 ~~dC~dg~~~de~~~~C~~~~~C~~~~f~C~~~~~Ci~~~~~Cdg~~dC~d~sDe~ 558 (573)
-+ +....|.+.++.|.+-.+|.+.+..|||.+||.|+++|.
T Consensus 68 ----------~~-----~~~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~ 108 (964)
T KOG3509|consen 68 ----------AK-----PSASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEV 108 (964)
T ss_pred ----------cc-----ccccccCCcccccccchhcCCccccccCCCCCCccchhc
Confidence 00 023346788899998879999999999999999999997
No 150
>PTZ00420 coronin; Provisional
Probab=94.65 E-value=8.5 Score=42.25 Aligned_cols=220 Identities=10% Similarity=0.032 Sum_probs=113.9
Q ss_pred cccEEEEEcCCCc--ee-------ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952 24 KYYVRNMSLDATQ--YS-------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA 94 (573)
Q Consensus 24 ~~~I~~i~l~g~~--~~-------~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla 94 (573)
...|+..++.... .. .+......+..|+|++....|+.+-...+.|..+++........+... ..+..|+
T Consensus 96 DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~~V~Sls 174 (568)
T PTZ00420 96 DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-KKLSSLK 174 (568)
T ss_pred CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-CcEEEEE
Confidence 4677777775321 11 111223457899999987777777667788999998754432222222 4677888
Q ss_pred EeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCC--cceEEE---eCCCceEEEEecCC--cCeEEEEeccCCC-c
Q psy952 95 VDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQD--PRGITL---HPGIGYVYFSSWNL--QAYIGKIGMDGSN-F 165 (573)
Q Consensus 95 vD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~--P~~Iav---dp~~g~LYwtd~~~--~~~I~r~~ldG~~-~ 165 (573)
+++.+ .++.+-...+.|.+.++..... ..+...... -+.+.+ .+..++|.-+.... ...|..-++.... .
T Consensus 175 wspdG-~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p 253 (568)
T PTZ00420 175 WNIKG-NLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA 253 (568)
T ss_pred ECCCC-CEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc
Confidence 88754 4555555567899999875432 222221111 111221 24445555444321 1235544544211 1
Q ss_pred EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeeeCCeEEEecCCCCceEE
Q psy952 166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLFEDHIYWTDWNTKSINR 244 (573)
Q Consensus 166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~~~~lywtd~~~~~I~~ 244 (573)
...+. ...-..+--...|+..+.||++-.+.+.|..+++.......+.... ...| .|+++.-.+. .|.....|.|
T Consensus 254 l~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-s~~p~~g~~f~Pkr~--~dv~~cEi~R 329 (568)
T PTZ00420 254 LVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-SCSPFRSFGFLPKQI--CDVYKCEIGR 329 (568)
T ss_pred eEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-cCCCccceEEccccc--cCchhhhHhH
Confidence 11110 1111111112557778999999888899999888654444333321 2222 4566544332 2333344555
Q ss_pred EeccC
Q psy952 245 ADKFN 249 (573)
Q Consensus 245 ~~~~~ 249 (573)
+-+.+
T Consensus 330 ~~kl~ 334 (568)
T PTZ00420 330 VYKNE 334 (568)
T ss_pred Hhhhc
Confidence 44443
No 151
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=94.65 E-value=0.021 Score=33.37 Aligned_cols=24 Identities=54% Similarity=1.241 Sum_probs=19.9
Q ss_pred CccccCCCCceecCCCcccccccc
Q psy952 367 GYYCECNTGYKLLEDGKACTDIDE 390 (573)
Q Consensus 367 ~~~C~C~~~f~c~~~~~c~~~~~~ 390 (573)
+|.|.|+.||++..+++.|.|++|
T Consensus 1 sy~C~C~~Gy~l~~d~~~C~DIdE 24 (24)
T PF12662_consen 1 SYTCSCPPGYQLSPDGRSCEDIDE 24 (24)
T ss_pred CEEeeCCCCCcCCCCCCccccCCC
Confidence 478999999999887777887765
No 152
>KOG4328|consensus
Probab=94.63 E-value=1.6 Score=44.96 Aligned_cols=198 Identities=11% Similarity=0.085 Sum_probs=109.0
Q ss_pred CcceEEEEEEcCCC-EEEEEECCCCeEEEEEcCCC--cce-EEE-cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952 44 LLNVVAMDFHYKEN-RFYFADVAAKTIYRSRVGST--EKE-RVI-RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118 (573)
Q Consensus 44 ~~~~~~v~~d~~~~-~ly~~d~~~~~I~~~~~~g~--~~~-~i~-~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld 118 (573)
.+.+..|+|++..+ +|..+....|.|...++++. ... +++ ...-..+.+|.+-+.+-.-+++-+..|.|.-.++.
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~ 265 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFE 265 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeec
Confidence 45688999999998 77777777789999998642 222 222 22223456677766555444444556777777777
Q ss_pred CCceeEecc---CCCCcceEEEeCCCceEEEEe-cCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952 119 GTNRKTLKT---AIQDPRGITLHPGIGYVYFSS-WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 119 g~~~~~l~~---~~~~P~~Iavdp~~g~LYwtd-~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D 194 (573)
+...+++++ .-..-.++-+..+++.+|+.+ ++ .-.+.-..++|+....+. .... ...+|++.|....++.+-
T Consensus 266 ~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G-~f~~iD~R~~~s~~~~~~--lh~k-KI~sv~~NP~~p~~laT~ 341 (498)
T KOG4328|consen 266 GNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVG-NFNVIDLRTDGSEYENLR--LHKK-KITSVALNPVCPWFLATA 341 (498)
T ss_pred chhhHHHhhcCccceeeeeccccCCCccEEEeeccc-ceEEEEeecCCccchhhh--hhhc-ccceeecCCCCchheeec
Confidence 766555553 222345555666666666554 44 334444556676544433 1221 568999998888777766
Q ss_pred CCCC--eEEEEeCCCCcEEEEEeCCccceeEEEeee---CCeEEEecCCCCceEEEe
Q psy952 195 AHLD--YIASVDLDGKHKHIVISGQKVPHVFALTLF---EDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 195 ~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~---~~~lywtd~~~~~I~~~~ 246 (573)
...+ +|+=++-=+....-++......++..-|.| ++. .+|.-....|...+
T Consensus 342 s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~d 397 (498)
T KOG4328|consen 342 SLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFD 397 (498)
T ss_pred ccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEee
Confidence 5444 455443222222212222112234444443 455 33433445555443
No 153
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=94.47 E-value=0.02 Score=38.92 Aligned_cols=34 Identities=41% Similarity=0.997 Sum_probs=27.9
Q ss_pred CccccCCCCCccCC--ccccCCCCccccCCCCceecC
Q psy952 346 VDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLE 380 (573)
Q Consensus 346 ~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~ 380 (573)
++||.. ....|.. .|.|+.|+|.|.|+.+|+...
T Consensus 2 idEC~~-~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~ 37 (42)
T PF07645_consen 2 IDECAE-GPHNCPENGTCVNTEGSYSCSCPPGYELND 37 (42)
T ss_dssp SSTTTT-TSSSSSTTSEEEEETTEEEEEESTTEEECT
T ss_pred ccccCC-CCCcCCCCCEEEcCCCCEEeeCCCCcEECC
Confidence 677877 5577874 899999999999999998543
No 154
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.34 E-value=0.15 Score=34.12 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=30.5
Q ss_pred cCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEe
Q psy952 98 VGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLH 138 (573)
Q Consensus 98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavd 138 (573)
.+++||+++...+.|.++++.......-+.....|++|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence 36789999999999999998654433333445789999874
No 155
>KOG0270|consensus
Probab=94.24 E-value=6.5 Score=40.48 Aligned_cols=146 Identities=12% Similarity=0.046 Sum_probs=92.7
Q ss_pred EEEEEe--cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC---CcceEEEcCCCCCcc
Q psy952 18 WLIFSN--KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS---TEKERVIRHDSHGLE 91 (573)
Q Consensus 18 ~l~~s~--~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g---~~~~~i~~~~~~~p~ 91 (573)
-||++. ...|...+++..+....+ ...+.+..|+|++.+..+.++....+++...+... ...+ +- -.+.++
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~-wk--~~g~VE 333 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE-WK--FDGEVE 333 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce-EE--eccceE
Confidence 344443 367777888765544333 34567889999999999999888888887777642 1111 11 124677
Q ss_pred eeEEeecCCcEEEEeCCCCeEEEEEcCC--CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952 92 GLAVDWVGRKLYWLDRHSKQLDVAELDG--TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 167 (573)
Q Consensus 92 glavD~~~~~LY~td~~~~~I~~~~ldg--~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~ 167 (573)
-++.++..-+.|+.-...|.++-+++.. .-.-++...-....||.+.+..-.|..|.. ....+..-++++...+.
T Consensus 334 kv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s-~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 334 KVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS-TDKVVKLWKFDVDSPKS 410 (463)
T ss_pred EEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc-ccceEEEEeecCCCCcc
Confidence 7888887777777777777777777643 333334444445788888887777777753 34444444555554433
No 156
>KOG0291|consensus
Probab=94.08 E-value=11 Score=41.43 Aligned_cols=208 Identities=10% Similarity=0.022 Sum_probs=119.3
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
..+.+.+|++ +-.|.+++..++.++.+.+-+-..--.+..+-..+..+++...++.|-+.-+..+.+.|-...... -+
T Consensus 266 ~kvtaa~fH~-~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs-YV 343 (893)
T KOG0291|consen 266 SKVTAAAFHK-GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES-YV 343 (893)
T ss_pred cceeeeeccC-CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc-ee
Confidence 3456666764 344555666666665555543221111222224666777777777777777777788777765432 12
Q ss_pred ec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 125 LK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 125 l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
+- ........|++.| .|.+..|- +..++|..-++.-..-.+-+ ++.-....++.+. ..++..++-+-.++|..
T Consensus 344 lKQQgH~~~i~~l~YSp-Dgq~iaTG-~eDgKVKvWn~~SgfC~vTF--teHts~Vt~v~f~-~~g~~llssSLDGtVRA 418 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSP-DGQLIATG-AEDGKVKVWNTQSGFCFVTF--TEHTSGVTAVQFT-ARGNVLLSSSLDGTVRA 418 (893)
T ss_pred eeccccccceeeEEECC-CCcEEEec-cCCCcEEEEeccCceEEEEe--ccCCCceEEEEEE-ecCCEEEEeecCCeEEe
Confidence 22 3466678999999 45555554 34667776666544433333 3444445677776 44555555555666666
Q ss_pred EeCC-CCcEEEEEeCCccceeEEEeee--CCeEEEecCCCCceEEEeccCCcceEEEcccC
Q psy952 203 VDLD-GKHKHIVISGQKVPHVFALTLF--EDHIYWTDWNTKSINRADKFNGRDYRVLRNTT 260 (573)
Q Consensus 203 ~~~d-G~~~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~ 260 (573)
.|+. +.+-+++.... -.+..-||++ ++-+.-.....-.|+..+..+|+...+|....
T Consensus 419 wDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHE 478 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHE 478 (893)
T ss_pred eeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCC
Confidence 6653 23334433221 2234567775 44444456666678888888898777775543
No 157
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.00 E-value=4.5 Score=44.71 Aligned_cols=160 Identities=10% Similarity=0.120 Sum_probs=88.2
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECC-----------CCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVA-----------AKTIYRSRVGSTEKERVIRHDSHGLEGLA 94 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~-----------~~~I~~~~~~g~~~~~i~~~~~~~p~gla 94 (573)
.|+.++..+.. ..+..+. ......|++..+.||++... .+.|+.+.+++..... .. -..+..|+
T Consensus 380 ~Lwv~~~gg~~-~~lt~g~-~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~--~~-~g~Issl~ 454 (591)
T PRK13616 380 SLWVGPLGGVA-VQVLEGH-SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS--RV-PGPISELQ 454 (591)
T ss_pred EEEEEeCCCcc-eeeecCC-CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh--cc-CCCcCeEE
Confidence 56666664443 2222221 23445688776777766322 2456655565543332 11 13578888
Q ss_pred EeecCCcEEEEeCCCCeEEE---EEcCCCceeE-----eccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEeccCCCc
Q psy952 95 VDWVGRKLYWLDRHSKQLDV---AELDGTNRKT-----LKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF 165 (573)
Q Consensus 95 vD~~~~~LY~td~~~~~I~~---~~ldg~~~~~-----l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~ 165 (573)
+-+.+.+|.+.-. ++|++ ...++...+. |...+.. +..++=-. .+.|++...+....++++.+||...
T Consensus 455 wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~-~~~L~V~~~~~~~~v~~v~vDG~~~ 531 (591)
T PRK13616 455 LSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT-GDSLVVGRSDPEHPVWYVNLDGSNS 531 (591)
T ss_pred ECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCCccccceEec-CCEEEEEecCCCCceEEEecCCccc
Confidence 8888888877653 56776 4433333222 2234443 35554333 3446666544456789999999886
Q ss_pred EEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952 166 TRILTHEDDIAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 166 ~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~ 196 (573)
+.+. ..++..| ..+|......||++|..
T Consensus 532 ~~~~--~~n~~~~-v~~vaa~~~~iyv~~~~ 559 (591)
T PRK13616 532 DALP--SRNLSAP-VVAVAASPSTVYVTDAR 559 (591)
T ss_pred cccC--CCCccCc-eEEEecCCceEEEEcCC
Confidence 6533 3444444 34444445679988754
No 158
>KOG0286|consensus
Probab=93.96 E-value=6.7 Score=38.33 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=91.9
Q ss_pred CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEE
Q psy952 67 KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVY 145 (573)
Q Consensus 67 ~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LY 145 (573)
......++..+.....+......+-+|++-+...+.|++-.-......-++. |..+..+...-...+.|.+.| .|+-|
T Consensus 166 ~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP-~G~af 244 (343)
T KOG0286|consen 166 MTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFP-SGDAF 244 (343)
T ss_pred ceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEcc-CCCee
Confidence 3444555554444444444456788888888789999997665555555543 455566666777889999999 78888
Q ss_pred EEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEE
Q psy952 146 FSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFAL 225 (573)
Q Consensus 146 wtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~i 225 (573)
.|-. ..+...-.++.......+......+...+++++. ..+||.++-.....+.+-+.--..+.-++.+. -.+...|
T Consensus 245 atGS-DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GH-eNRvScl 321 (343)
T KOG0286|consen 245 ATGS-DDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGH-ENRVSCL 321 (343)
T ss_pred eecC-CCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecCCceeEeeccccceEEEeecc-CCeeEEE
Confidence 8863 3555555555543333333222333444688887 56777776555555555443333333333332 2344444
Q ss_pred ee
Q psy952 226 TL 227 (573)
Q Consensus 226 a~ 227 (573)
.+
T Consensus 322 ~~ 323 (343)
T KOG0286|consen 322 GV 323 (343)
T ss_pred EE
Confidence 44
No 159
>KOG0270|consensus
Probab=93.93 E-value=8.7 Score=39.60 Aligned_cols=155 Identities=12% Similarity=0.102 Sum_probs=99.0
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC---Cc---
Q psy952 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG---TN--- 121 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg---~~--- 121 (573)
.+|++......|..+-.....|...+++......++...-..+..|++.+....+..+-+..+++...+..- ..
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w 326 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW 326 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE
Confidence 467777777788888888889999999987776666644478888999888888888887778887777641 11
Q ss_pred -----eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952 122 -----RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 122 -----~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~ 196 (573)
++.+.-....|..+.+....|.|||.|.+.. |.-.-.+..... ...||.+......|..+...
T Consensus 327 k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~---------~~~vwt~~AHd~---~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 327 KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP---------GKPVWTLKAHDD---EISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred EeccceEEEEecCCCceeEEEecCCceEEeeecCCC---------CCceeEEEeccC---CcceEEecCCCCcceeeccc
Confidence 1112223334566666666777777775432 111122221122 23577777666677777666
Q ss_pred CCeEEEEeCCCCcEEEEE
Q psy952 197 LDYIASVDLDGKHKHIVI 214 (573)
Q Consensus 197 ~~~I~~~~~dG~~~~~l~ 214 (573)
.+.+..-++++.+.+.+.
T Consensus 395 d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred cceEEEEeecCCCCcccc
Confidence 666666666666654444
No 160
>KOG0266|consensus
Probab=93.86 E-value=11 Score=40.43 Aligned_cols=202 Identities=13% Similarity=0.143 Sum_probs=114.2
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEc-CC-CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-Cc
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRV-GS-TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TN 121 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~-~g-~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~ 121 (573)
..+..++|-+.. .+.++-.....|+..++ +. ....++. .....+..++|.+.+ +++++-...+.|.+-++.+ ..
T Consensus 204 ~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~ 280 (456)
T KOG0266|consen 204 RGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGEC 280 (456)
T ss_pred cceeeeEECCCC-cEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeE
Confidence 347789998744 45556566677777777 33 3334333 334678999999988 7888877888999988875 45
Q ss_pred eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE--EEEecCCCCCC--C-ceEEEeccCCeEEEEeCC
Q psy952 122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT--RILTHEDDIAW--P-NALTLDYFTERLYWADAH 196 (573)
Q Consensus 122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~--~l~~~~~~l~~--P-~glaiD~~~~~LYw~D~~ 196 (573)
.++|...-....++++.+. +.++++- +....|...++...... ..+ ..... | .-+.+++ +++..|+-..
T Consensus 281 ~~~l~~hs~~is~~~f~~d-~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~---~~~~~~~~~~~~~fsp-~~~~ll~~~~ 354 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPD-GNLLVSA-SYDGTIRVWDLETGSKLCLKLL---SGAENSAPVTSVQFSP-NGKYLLSASL 354 (456)
T ss_pred EEeeeccCCceEEEEECCC-CCEEEEc-CCCccEEEEECCCCceeeeecc---cCCCCCCceeEEEECC-CCcEEEEecC
Confidence 5555555556788999984 5555555 33667777777665522 222 22222 3 4555554 4444444445
Q ss_pred CCeEEEEeCCCCcEEEEEeCCccc--eeEEEeee-CCeEEEecCCCCceEEEeccCCcceEE
Q psy952 197 LDYIASVDLDGKHKHIVISGQKVP--HVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRV 255 (573)
Q Consensus 197 ~~~I~~~~~dG~~~~~l~~~~~~~--~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~ 255 (573)
.+.+...++..........+.... -.+..... ++.+..+-.....|+..+..++..+..
T Consensus 355 d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~ 416 (456)
T KOG0266|consen 355 DRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQR 416 (456)
T ss_pred CCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhh
Confidence 556666666633222222211011 12222222 344444444555666666555443333
No 161
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.81 E-value=6.6 Score=42.89 Aligned_cols=50 Identities=16% Similarity=0.089 Sum_probs=27.8
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe
Q psy952 49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD 106 (573)
Q Consensus 49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td 106 (573)
.++||++.+.|||.--+..- ..+..+ -..++..-.=||+|..++++-|.-
T Consensus 238 ~~s~D~~~~lvy~~tGnp~p-----~~~~~r---~gdnl~~~s~vAld~~TG~~~W~~ 287 (527)
T TIGR03075 238 TGSYDPETNLIYFGTGNPSP-----WNSHLR---PGDNLYTSSIVARDPDTGKIKWHY 287 (527)
T ss_pred ceeEcCCCCeEEEeCCCCCC-----CCCCCC---CCCCccceeEEEEccccCCEEEee
Confidence 56899999999986533211 111111 011122223377888888888864
No 162
>KOG4378|consensus
Probab=93.70 E-value=6.4 Score=41.16 Aligned_cols=194 Identities=8% Similarity=0.025 Sum_probs=112.3
Q ss_pred CCEEEEEECCCC-eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEe-CCCCeEEEEEcCCCceeEec--cCCCC
Q psy952 56 ENRFYFADVAAK-TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD-RHSKQLDVAELDGTNRKTLK--TAIQD 131 (573)
Q Consensus 56 ~~~ly~~d~~~~-~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td-~~~~~I~~~~ldg~~~~~l~--~~~~~ 131 (573)
...+|....+.+ .+..+++...-....+......+.++.+.|... |++. +..|.|.+..+....+.+-+ .....
T Consensus 89 s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~De--yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqs 166 (673)
T KOG4378|consen 89 SQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDE--YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQS 166 (673)
T ss_pred hcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcc--eeEEeccCCcEEEEecccCccccceecCCCCe
Confidence 445787766544 444455553222223333345677777776544 4443 33456777776655544433 22334
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHK 210 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~ 210 (573)
.|-|-.+|.++.|..+- +..+.+...+..|.....-. .+.-..| .||.+.+.+..|+++-....+|..++......
T Consensus 167 vRll~ys~skr~lL~~a-sd~G~VtlwDv~g~sp~~~~--~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s 243 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIA-SDKGAVTLWDVQGMSPIFHA--SEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS 243 (673)
T ss_pred EEEeecccccceeeEee-ccCCeEEEEeccCCCcccch--hhhccCCcCcceecCCccceEEEecccceEEEeecccccc
Confidence 56777788787777665 34566666666665543333 3334455 59999999999999998888999888763222
Q ss_pred EEEEeCCccceeE-EEeee-CCeEEEecCCCCceEEEeccCC-cceEEEc
Q psy952 211 HIVISGQKVPHVF-ALTLF-EDHIYWTDWNTKSINRADKFNG-RDYRVLR 257 (573)
Q Consensus 211 ~~l~~~~~~~~p~-~ia~~-~~~lywtd~~~~~I~~~~~~~g-~~~~~l~ 257 (573)
..-+. ..+|+ .|++- .+.+..+-..+++|+..+...- ..+.++.
T Consensus 244 ~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 244 TDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred cceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 11111 23564 45553 4556666666777777664332 2344443
No 163
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=93.43 E-value=6.7 Score=36.60 Aligned_cols=130 Identities=9% Similarity=0.077 Sum_probs=77.9
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC-CCCeEEEEEcCCCceeEeccCCCCcce
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR-HSKQLDVAELDGTNRKTLKTAIQDPRG 134 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~-~~~~I~~~~ldg~~~~~l~~~~~~P~~ 134 (573)
+++-|+.. ..|++++..+.....+-...-..+..++..+.++.+.+... ....|...++.+.....+.. .....
T Consensus 31 ~~ks~~~~---~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~--~~~n~ 105 (194)
T PF08662_consen 31 SGKSYYGE---FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT--QPRNT 105 (194)
T ss_pred CcceEEee---EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC--CCceE
Confidence 44445433 35777776665554443222234778888888888776643 34578888887555444432 23567
Q ss_pred EEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEe
Q psy952 135 ITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 135 Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D 194 (573)
|..+|...+|..+..+. .+.|...++. ..+.+. .........++.+|++..|..+.
T Consensus 106 i~wsP~G~~l~~~g~~n~~G~l~~wd~~--~~~~i~--~~~~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGNLNGDLEFWDVR--KKKKIS--TFEHSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEECCCCCEEEEEEccCCCcEEEEEECC--CCEEee--ccccCcEEEEEEcCCCCEEEEEE
Confidence 99999777777776443 3557666665 444444 23333456777777666665554
No 164
>KOG0281|consensus
Probab=93.20 E-value=0.8 Score=45.37 Aligned_cols=193 Identities=15% Similarity=0.101 Sum_probs=114.6
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCce
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNR 122 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~ 122 (573)
...+.-|.||- ...++....+.|...+.+...-..++....+.+--|.+| ++|.++-+...+|.+-+.+ |...
T Consensus 197 skgVYClQYDD---~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 197 SKGVYCLQYDD---EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred CCceEEEEecc---hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEeccCCchh
Confidence 34455666652 233444455566666665433222333333455555555 4588888888888888875 5556
Q ss_pred eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC----cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN----FTRILTHEDDIAWPNALTLDYFTERLYWADAHLD 198 (573)
Q Consensus 123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~----~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~ 198 (573)
++++..-...-++.+. +|+|.-.. ....|.+-+|+... +.+++ ......+- +|++ .++.++-++..
T Consensus 271 ~tlihHceaVLhlrf~--ng~mvtcS--kDrsiaVWdm~sps~it~rrVLv---GHrAaVNv--Vdfd-~kyIVsASgDR 340 (499)
T KOG0281|consen 271 NTLIHHCEAVLHLRFS--NGYMVTCS--KDRSIAVWDMASPTDITLRRVLV---GHRAAVNV--VDFD-DKYIVSASGDR 340 (499)
T ss_pred hHHhhhcceeEEEEEe--CCEEEEec--CCceeEEEeccCchHHHHHHHHh---hhhhheee--eccc-cceEEEecCCc
Confidence 6677666667788776 46654333 35567777776544 23333 22222333 4433 44556666677
Q ss_pred eEEEEeCCCCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 199 YIASVDLDGKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
+|..-+.+...-..++ ..|-.|||- +.+++.++-...++|...+...|.-.++|
T Consensus 341 TikvW~~st~efvRtl----~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvL 396 (499)
T KOG0281|consen 341 TIKVWSTSTCEFVRTL----NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL 396 (499)
T ss_pred eEEEEeccceeeehhh----hcccccceehhccCeEEEecCCCceEEEEeccccHHHHHH
Confidence 7777666544332222 236677775 78999999988889888887777644443
No 165
>smart00284 OLF Olfactomedin-like domains.
Probab=93.00 E-value=5.3 Score=38.81 Aligned_cols=140 Identities=13% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcce--EEEcC-C----------CCCcceeEEeecCC-cEEEEeCCCCeEEEEEcCCCc
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKE--RVIRH-D----------SHGLEGLAVDWVGR-KLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~--~i~~~-~----------~~~p~glavD~~~~-~LY~td~~~~~I~~~~ldg~~ 121 (573)
++.||+.-.....|.|+++...... .++.. + -..-..||+|..+= -||-|....+.|.+..|+-..
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~t 162 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPAT 162 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCccc
Confidence 5899998888889999999876543 33321 1 11224688885332 245556667889998888655
Q ss_pred eeEec---cCCCCcc-eEEEeCCCceEEEEecCC--cCeEE-EEeccCCCcEEE-EecCCCCCCCceEEEeccCCeEEEE
Q psy952 122 RKTLK---TAIQDPR-GITLHPGIGYVYFSSWNL--QAYIG-KIGMDGSNFTRI-LTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 122 ~~~l~---~~~~~P~-~Iavdp~~g~LYwtd~~~--~~~I~-r~~ldG~~~~~l-~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
..+.. +....+. +=|+- .=|.||.++... ..+|. ..+........+ +.-......-..|...|.+++||.=
T Consensus 163 L~ve~tW~T~~~k~sa~naFm-vCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 163 LTIENTWITTYNKRSASNAFM-ICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred ceEEEEEEcCCCcccccccEE-EeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeeccccccceeceeCCCCCeEEEE
Confidence 54433 2333222 11222 158999998522 33443 334443322211 1001112222458888999999986
Q ss_pred eCC
Q psy952 194 DAH 196 (573)
Q Consensus 194 D~~ 196 (573)
|.+
T Consensus 242 dng 244 (255)
T smart00284 242 NNG 244 (255)
T ss_pred eCC
Confidence 643
No 166
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=92.93 E-value=13 Score=38.53 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=40.6
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcc
Q psy952 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~ 252 (573)
+++||++.. .+.++.++........-.. ......+++.+++||+.. ..+.|+.+++.+|+.
T Consensus 241 ~~~vy~~~~-~g~l~a~d~~tG~~~W~~~---~~~~~~p~~~~~~vyv~~-~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 241 GGQVYAVSY-QGRVAALDLRSGRVLWKRD---ASSYQGPAVDDNRLYVTD-ADGVVVALDRRSGSE 301 (377)
T ss_pred CCEEEEEEc-CCEEEEEECCCCcEEEeec---cCCccCceEeCCEEEEEC-CCCeEEEEECCCCcE
Confidence 678998764 4678888875333222111 233445667889999986 457899999878764
No 167
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=92.91 E-value=11 Score=37.62 Aligned_cols=158 Identities=13% Similarity=0.065 Sum_probs=92.1
Q ss_pred EEeecCCcEEEEe----CCCCeEEEEEcCCCceeE--eccCCCCcceEEEeCCCceEEEEecCC--c-------------
Q psy952 94 AVDWVGRKLYWLD----RHSKQLDVAELDGTNRKT--LKTAIQDPRGITLHPGIGYVYFSSWNL--Q------------- 152 (573)
Q Consensus 94 avD~~~~~LY~td----~~~~~I~~~~ldg~~~~~--l~~~~~~P~~Iavdp~~g~LYwtd~~~--~------------- 152 (573)
+|...++.||.|+ .+.+.|.|.+.....+++ +-+....|..|.+.|....|.+++.+. .
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM 136 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTM 136 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhc
Confidence 3555688899986 456899999998555443 336677899999999777999998652 1
Q ss_pred -CeEEEE-eccCCCcEEEEecCCCC--CCCceEEEeccCCeEEEEeCCCC-------eEEEEeCCCCcEEEEEeCC----
Q psy952 153 -AYIGKI-GMDGSNFTRILTHEDDI--AWPNALTLDYFTERLYWADAHLD-------YIASVDLDGKHKHIVISGQ---- 217 (573)
Q Consensus 153 -~~I~r~-~ldG~~~~~l~~~~~~l--~~P~glaiD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~l~~~~---- 217 (573)
+.|..+ ..+|....... ....+ ..-.-|+++. .+.++++....+ .|...+.++. .+.+....
T Consensus 137 ~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~ 213 (305)
T PF07433_consen 137 QPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWR 213 (305)
T ss_pred CCceEEEecCCCceeeeee-cCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHH
Confidence 122222 22233222211 01111 1235678874 566666644332 2333333332 22221110
Q ss_pred -ccceeEEEeeeC--CeEEEecCCCCceEEEeccCCcceE
Q psy952 218 -KVPHVFALTLFE--DHIYWTDWNTKSINRADKFNGRDYR 254 (573)
Q Consensus 218 -~~~~p~~ia~~~--~~lywtd~~~~~I~~~~~~~g~~~~ 254 (573)
.-.+.-+|++.. +.+.+|-...+.+...+..+|..+.
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence 024566788854 4688999898999888877776444
No 168
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=92.81 E-value=0.48 Score=31.61 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=30.2
Q ss_pred CCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952 55 KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD 96 (573)
Q Consensus 55 ~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD 96 (573)
.+++||+++...+.|..+++........+..+ ..|.+|+++
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 57889999999999999998654433334444 689998874
No 169
>KOG1539|consensus
Probab=92.72 E-value=17 Score=40.53 Aligned_cols=156 Identities=17% Similarity=0.057 Sum_probs=84.2
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc---CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR---HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~---~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~ 120 (573)
..++.+|+++.=++..|+ ....+.|-++++.++-...-.. ..-..+.|||+|-.+ ++.++-...|.+..-++.+.
T Consensus 448 ~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred CcceEEEEEeccCceEEE-eccCCeEEEEEcccCeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCc
Confidence 355788888877766665 4567789999997653322221 112578999999654 45565555666766666655
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I 200 (573)
....-+.-...+.+|..+-..+.+-.+- ..-.|..+++--......+ ...-..-+.+++.+++++|..+. ..++|
T Consensus 526 ~l~~~l~l~~~~~~iv~hr~s~l~a~~~--ddf~I~vvD~~t~kvvR~f--~gh~nritd~~FS~DgrWlisas-mD~tI 600 (910)
T KOG1539|consen 526 VLKKSLRLGSSITGIVYHRVSDLLAIAL--DDFSIRVVDVVTRKVVREF--WGHGNRITDMTFSPDGRWLISAS-MDSTI 600 (910)
T ss_pred ceeeeeccCCCcceeeeeehhhhhhhhc--CceeEEEEEchhhhhhHHh--hccccceeeeEeCCCCcEEEEee-cCCcE
Confidence 4211111112234444433322221111 1234444443221111111 12334457899998888777765 44667
Q ss_pred EEEeCC
Q psy952 201 ASVDLD 206 (573)
Q Consensus 201 ~~~~~d 206 (573)
...|+-
T Consensus 601 r~wDlp 606 (910)
T KOG1539|consen 601 RTWDLP 606 (910)
T ss_pred EEEecc
Confidence 776654
No 170
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=92.67 E-value=0.32 Score=38.69 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=36.6
Q ss_pred CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC
Q psy952 33 DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG 75 (573)
Q Consensus 33 ~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~ 75 (573)
++++...++.++..|.||++++.++.||+++...+.|+.+...
T Consensus 42 d~~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 42 DGKEVKVVASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred eCCEeEEeeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 4455667788899999999999999999999999999887753
No 171
>KOG0277|consensus
Probab=92.67 E-value=9.9 Score=36.49 Aligned_cols=165 Identities=10% Similarity=0.116 Sum_probs=92.4
Q ss_pred CCCCCCCceeeCCCCCCEEEEEe--------cccEEEEEcC-CCceeec--ccCCcceEEEEEEcCCCEEEEEECCCCeE
Q psy952 1 MPGWDESTCKRRDSIKPWLIFSN--------KYYVRNMSLD-ATQYSLV--HQDLLNVVAMDFHYKENRFYFADVAAKTI 69 (573)
Q Consensus 1 ~~g~dg~~C~~~~~~~~~l~~s~--------~~~I~~i~l~-g~~~~~~--~~~~~~~~~v~~d~~~~~ly~~d~~~~~I 69 (573)
+||+.|-+=+-..-.+..|.+|. ..+|+.++++ +...... ........+|++......+.++-.+.+++
T Consensus 6 tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 6 TPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred cCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceE
Confidence 57887777766554555566554 3466777764 2222211 22234467888888777777777888888
Q ss_pred EEEEcCCCcceEEEcCCCCCcceeEEee--cCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEE
Q psy952 70 YRSRVGSTEKERVIRHDSHGLEGLAVDW--VGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYF 146 (573)
Q Consensus 70 ~~~~~~g~~~~~i~~~~~~~p~glavD~--~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYw 146 (573)
+..++.-.. ..|..-.-+.-+=.++|| +.+..+++.+..++|..-+.+- ..+.++...-.-..+.+.+|....||-
T Consensus 86 rl~d~~~~s-~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfa 164 (311)
T KOG0277|consen 86 RLFDLTMPS-KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFA 164 (311)
T ss_pred EEeccCCCC-cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEE
Confidence 877743221 122211112333345554 5677888888888776555442 233333333333666777777777776
Q ss_pred EecCC-cCeEEEEeccCCCcE
Q psy952 147 SSWNL-QAYIGKIGMDGSNFT 166 (573)
Q Consensus 147 td~~~-~~~I~r~~ldG~~~~ 166 (573)
+-.+. .-+|+-+...|+...
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~ 185 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMS 185 (311)
T ss_pred EccCCceEEEEEecCCCceeE
Confidence 65442 234554444454433
No 172
>KOG2106|consensus
Probab=92.07 E-value=16 Score=38.49 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=32.7
Q ss_pred EEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEE
Q psy952 18 WLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR 73 (573)
Q Consensus 18 ~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~ 73 (573)
+++-+.++.|..-.+...-...+.-......|++.++ ...+|.+-...+.+...+
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-s~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-SKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-ChhheeeccCcceEEEcc
Confidence 5555667888877776542222222233578999987 455666665555554444
No 173
>KOG0293|consensus
Probab=92.06 E-value=16 Score=37.48 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=115.1
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~ 123 (573)
..+..|.|.|...+|.-.. ....+...+.+.+........++ ..+...+--+.+ .=+++-+..+.|...++||....
T Consensus 270 ~~V~yi~wSPDdryLlaCg-~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~ 347 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACG-FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILG 347 (519)
T ss_pred CceEEEEECCCCCeEEecC-chHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhh
Confidence 3456788888777665443 23357777777665544444331 244444444433 33677777889999999997633
Q ss_pred Eec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 124 TLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 124 ~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
.-- ........||+.+...+|+... ...+|.-.+.....-+.++. .-..-..+.|. .++++..+.-....|..
T Consensus 348 ~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lis---e~~~its~~iS-~d~k~~LvnL~~qei~L 421 (519)
T KOG0293|consen 348 NWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGLIS---EEQPITSFSIS-KDGKLALVNLQDQEIHL 421 (519)
T ss_pred cccccccceeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcccc---ccCceeEEEEc-CCCcEEEEEcccCeeEE
Confidence 221 1234467999999888888776 35566666655444333441 11223577776 56777777777777777
Q ss_pred EeCCCCcEEEEE--eCCccceeEEEe-eeC---CeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952 203 VDLDGKHKHIVI--SGQKVPHVFALT-LFE---DHIYWTDWNTKSINRADKFNGRDYRVLRN 258 (573)
Q Consensus 203 ~~~dG~~~~~l~--~~~~~~~p~~ia-~~~---~~lywtd~~~~~I~~~~~~~g~~~~~l~~ 258 (573)
-++. ..+++. .+... .-+-|- -|+ +.+.-+-...+.|+.-++.+|+...+|..
T Consensus 422 WDl~--e~~lv~kY~Ghkq-~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG 480 (519)
T KOG0293|consen 422 WDLE--ENKLVRKYFGHKQ-GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG 480 (519)
T ss_pred eecc--hhhHHHHhhcccc-cceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC
Confidence 6665 111111 11101 111111 122 23444455666777777777776666544
No 174
>KOG0282|consensus
Probab=91.91 E-value=7.7 Score=40.39 Aligned_cols=195 Identities=11% Similarity=0.051 Sum_probs=102.2
Q ss_pred CCCceeeCCCCCCEEEEEe--cccEEEEEcCC--CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952 5 DESTCKRRDSIKPWLIFSN--KYYVRNMSLDA--TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE 80 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g--~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 80 (573)
+|.++...--....|+.+. ...|+...+-+ .-++.....-..+..+.|.. .+.-|.+-.-...|.-.+++.+...
T Consensus 215 kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~-~g~~fLS~sfD~~lKlwDtETG~~~ 293 (503)
T KOG0282|consen 215 KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN-CGTSFLSASFDRFLKLWDTETGQVL 293 (503)
T ss_pred cccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc-cCCeeeeeecceeeeeeccccceEE
Confidence 4555554432244555554 35566555533 22222211122245666664 4444444444556666666655443
Q ss_pred EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcC-eEEEE
Q psy952 81 RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA-YIGKI 158 (573)
Q Consensus 81 ~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~-~I~r~ 158 (573)
.-+..+ ..|.-+.+.+.+.++|++-...++|...+..... +......+.....|.+-+ .|.=|++...... +|+-.
T Consensus 294 ~~f~~~-~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~ 371 (503)
T KOG0282|consen 294 SRFHLD-KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVD-EGRRFISSSDDKSVRIWEN 371 (503)
T ss_pred EEEecC-CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEcc-CCceEeeeccCccEEEEEc
Confidence 334333 4677778887788999999888999888875433 222334666677788776 4445555422211 22211
Q ss_pred eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952 159 GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD 206 (573)
Q Consensus 159 ~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d 206 (573)
.. +...+.++ ......--.|++. .++..+.+....+.|..+...
T Consensus 372 ~~-~v~ik~i~--~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs~~ 415 (503)
T KOG0282|consen 372 RI-PVPIKNIA--DPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFSTV 415 (503)
T ss_pred CC-Cccchhhc--chhhccCcceecC-CCCCeehhhccCceEEEEecc
Confidence 11 11112222 1222222246665 456667777777777776543
No 175
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=2.6 Score=39.16 Aligned_cols=66 Identities=15% Similarity=0.210 Sum_probs=43.3
Q ss_pred EeecCCcEEEEeCCCCeEEEEEcCCCceeEec--c-----------CCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 95 VDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK--T-----------AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 95 vD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~-----------~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
+.|+.+.||---..+.+|.+++++...+...+ + ...-++|||.+|..+++|+|-. .-+.+.-+.++
T Consensus 181 LE~VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK-~wp~lfEVk~~ 259 (262)
T COG3823 181 LEWVDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK-LWPLLFEVKLD 259 (262)
T ss_pred eeeeccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC-cCceeEEEEec
Confidence 34667777765555678888888755544322 1 2223899999999999999963 24555555444
No 176
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.70 E-value=15 Score=36.58 Aligned_cols=224 Identities=11% Similarity=0.047 Sum_probs=131.6
Q ss_pred CCEEEEEec--ccEEEEEcCCCcee-eccc-CCcceEE-EEEEcCCCEEEEEEC----CCCeEEEEEcCCCcc--eEEEc
Q psy952 16 KPWLIFSNK--YYVRNMSLDATQYS-LVHQ-DLLNVVA-MDFHYKENRFYFADV----AAKTIYRSRVGSTEK--ERVIR 84 (573)
Q Consensus 16 ~~~l~~s~~--~~I~~i~l~g~~~~-~~~~-~~~~~~~-v~~d~~~~~ly~~d~----~~~~I~~~~~~g~~~--~~i~~ 84 (573)
...++|+.+ ....+++..+.... .+.. ......| -+|.+....||-+.. ..+.|.+++...+.. ..+-+
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s 96 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPS 96 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecC
Confidence 457778875 56777888655443 2222 2222222 347888888999854 357899999873322 22333
Q ss_pred CCCCCcceeEEeecCCcEEEEeCCC------C-----------eEEEE-EcCCCceeE--ecc--CCCCcceEEEeCCCc
Q psy952 85 HDSHGLEGLAVDWVGRKLYWLDRHS------K-----------QLDVA-ELDGTNRKT--LKT--AIQDPRGITLHPGIG 142 (573)
Q Consensus 85 ~~~~~p~glavD~~~~~LY~td~~~------~-----------~I~~~-~ldg~~~~~--l~~--~~~~P~~Iavdp~~g 142 (573)
.+ -.|.-|.+.+.+..|-+++.+- + .+..+ ..+|..... |-. .....|.||+++ .|
T Consensus 97 ~G-IGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~-~G 174 (305)
T PF07433_consen 97 HG-IGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG-DG 174 (305)
T ss_pred CC-cChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC-CC
Confidence 44 4799999998888999987431 1 12223 223443333 111 223589999998 57
Q ss_pred eEEEEecCC------cCeEEEEeccCCCcEEEEecCC----CC-CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEE
Q psy952 143 YVYFSSWNL------QAYIGKIGMDGSNFTRILTHED----DI-AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKH 211 (573)
Q Consensus 143 ~LYwtd~~~------~~~I~r~~ldG~~~~~l~~~~~----~l-~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~ 211 (573)
.+.+...-. .+-|.....++. .+.+-. .. .+ ..--.|+++...+.+.++....+.+...+.....
T Consensus 175 ~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~-p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-- 250 (305)
T PF07433_consen 175 TVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPA-PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-- 250 (305)
T ss_pred cEEEEEecCCCCCccCCeEEEEcCCCc-ceeccC-ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC--
Confidence 777765321 234444444433 222210 11 11 2334799997778888998888888888654332
Q ss_pred EEEeCCccceeEEEeeeCCeEEEecCCCCceEEEec
Q psy952 212 IVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADK 247 (573)
Q Consensus 212 ~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~ 247 (573)
.+.... ++...||+...+.+.||. +.+.|.+...
T Consensus 251 ~~~~~~-l~D~cGva~~~~~f~~ss-G~G~~~~~~~ 284 (305)
T PF07433_consen 251 LLGSVP-LPDACGVAPTDDGFLVSS-GQGQLIRLSP 284 (305)
T ss_pred Eeeccc-cCceeeeeecCCceEEeC-CCccEEEccC
Confidence 233222 678899998777744554 5667766653
No 177
>KOG0315|consensus
Probab=91.64 E-value=13 Score=35.61 Aligned_cols=182 Identities=11% Similarity=0.069 Sum_probs=113.2
Q ss_pred CCEEEEEec--ccEEEEEcC-CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC--CCCCc
Q psy952 16 KPWLIFSNK--YYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH--DSHGL 90 (573)
Q Consensus 16 ~~~l~~s~~--~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~--~~~~p 90 (573)
.+.||++.. +.|+-..+. |.=...+-..-..+..|.+-+..+.|-. .....|+.++++.++...+.+- .-+.+
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAa--a~~qhvRlyD~~S~np~Pv~t~e~h~kNV 86 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAA--AGNQHVRLYDLNSNNPNPVATFEGHTKNV 86 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhh--ccCCeeEEEEccCCCCCceeEEeccCCce
Confidence 345666553 567666554 4333444344456778888776655544 3556788888887765444322 23577
Q ss_pred ceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEE
Q psy952 91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRIL 169 (573)
Q Consensus 91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~ 169 (573)
..+.|...++.+| |-+..+.+.+-++.......+.+...-.+.|.++|..+.|+..|. .+.|..-++.... ...++
T Consensus 87 taVgF~~dgrWMy-TgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dq--sg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 87 TAVGFQCDGRWMY-TGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQ--SGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEEeecCeEEE-ecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecC--CCcEEEEEccCCccccccC
Confidence 7888886665555 556778777777766554445554456789999999999999995 4566666664332 23344
Q ss_pred ecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 170 ~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
.+....-..|++++++.+|--+. ..+..+.-++
T Consensus 164 --Pe~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l 196 (311)
T KOG0315|consen 164 --PEDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRL 196 (311)
T ss_pred --CCCCcceeeEEEcCCCcEEEEec-CCccEEEEEc
Confidence 45556667899997666554443 4444444443
No 178
>KOG0286|consensus
Probab=91.52 E-value=15 Score=36.03 Aligned_cols=209 Identities=13% Similarity=0.128 Sum_probs=116.7
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCC-eEEEEEcC---CCc-ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAK-TIYRSRVG---STE-KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~-~I~~~~~~---g~~-~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
.-..+...||.|.++.|--....+. .||.+... |.. +...+...-.......| +.+...+|-++..+...-++
T Consensus 96 ~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f--~dD~~ilT~SGD~TCalWDi 173 (343)
T KOG0286|consen 96 PSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRF--LDDNHILTGSGDMTCALWDI 173 (343)
T ss_pred CceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEE--cCCCceEecCCCceEEEEEc
Confidence 3455778888887766554443332 45555532 111 11112111122333333 22445566666666666666
Q ss_pred CCCc-eeEeccCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952 118 DGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 118 dg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
.... ..++........+|+|.|.+++.|++-.-. ..+|+=+ .+|.-++.+...+.++ +.+.+- .++.-|.+-+
T Consensus 174 e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~-R~~~c~qtF~ghesDI---Nsv~ff-P~G~afatGS 248 (343)
T KOG0286|consen 174 ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDV-RSGQCVQTFEGHESDI---NSVRFF-PSGDAFATGS 248 (343)
T ss_pred ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeec-cCcceeEeeccccccc---ceEEEc-cCCCeeeecC
Confidence 5443 444556777899999999999999996432 3344433 2345555555323333 566654 3455566666
Q ss_pred CCCeEEEEeCCCCcEEEEEeCC-ccceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952 196 HLDYIASVDLDGKHKHIVISGQ-KVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVLRN 258 (573)
Q Consensus 196 ~~~~I~~~~~dG~~~~~l~~~~-~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~ 258 (573)
.......+++.......+++.. ......++++ ..++|.++-.....+.+=+...++.+.+|..
T Consensus 249 DD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~G 313 (343)
T KOG0286|consen 249 DDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAG 313 (343)
T ss_pred CCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeec
Confidence 6777777777654444444422 1334467776 4677777766666666666566665555543
No 179
>KOG0293|consensus
Probab=91.47 E-value=16 Score=37.54 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=50.2
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
..+...+|-+...+ |++....+.|...++||......-......+..||+-+.+..||.... ..+|..++...
T Consensus 313 ~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~-d~~i~l~~~e~ 385 (519)
T KOG0293|consen 313 FSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV-DKKIRLYNREA 385 (519)
T ss_pred CCcceeEEccCCce-eEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec-ccceeeechhh
Confidence 34678888875544 777777889999999997544333333457788998888888887763 34565555544
No 180
>KOG0646|consensus
Probab=91.39 E-value=20 Score=37.28 Aligned_cols=196 Identities=12% Similarity=0.044 Sum_probs=102.0
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC------CC
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD------GT 120 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld------g~ 120 (573)
+.+|+-++ .+...++....+.||-..+..+..-.++......+.-|.|- ..+.+++|-+..+.|.+-.+- ..
T Consensus 84 v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~ 161 (476)
T KOG0646|consen 84 VHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADND 161 (476)
T ss_pred eeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccC
Confidence 45777665 45555555567789999987765433344344556666665 467788888777777654331 11
Q ss_pred -ceeEe---ccCCCCcceEEEeC--CCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 121 -NRKTL---KTAIQDPRGITLHP--GIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 121 -~~~~l---~~~~~~P~~Iavdp--~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
..+.+ ........+|.+.+ .+.+||-+.. ...|...++.+.. ...++ .-..++++++|+.+.++|+.
T Consensus 162 ~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~----fp~si~av~lDpae~~~yiG 235 (476)
T KOG0646|consen 162 HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTIT----FPSSIKAVALDPAERVVYIG 235 (476)
T ss_pred CCccceeeeccCcceeEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEe----cCCcceeEEEcccccEEEec
Confidence 11111 12222244444443 2345554432 2223333333221 11111 12345799999988888876
Q ss_pred eCCCCeEEEEeCCCCc-----------------EEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEeccCCc
Q psy952 194 DAHLDYIASVDLDGKH-----------------KHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGR 251 (573)
Q Consensus 194 D~~~~~I~~~~~dG~~-----------------~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~ 251 (573)
. ..+.|+..++.+.. +..+..+..-....-|++ .++.|..+-...+.|..-+..+-.
T Consensus 236 t-~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 236 T-EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred C-CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 4 45677777665432 111211110013344566 566777776666666655544433
No 181
>KOG1274|consensus
Probab=91.25 E-value=30 Score=39.10 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=92.5
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCC--CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGS--TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
...|.||+.+..|+..+... .|.+++... ..+++|-..+ ..+.++|.+ .+.|.+-+..+.|.++..+......
T Consensus 16 ~t~i~~d~~gefi~tcgsdg-~ir~~~~~sd~e~P~ti~~~g-~~v~~ia~~---s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDG-DIRKWKTNSDEEEPETIDISG-ELVSSIACY---SNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred eEEEEEcCCCCEEEEecCCC-ceEEeecCCcccCCchhhccC-ceeEEEeec---ccceEEeeccceEEEeeCCCCCccc
Confidence 57889999999888887543 466555433 3445444233 355666664 3467777888999999988777666
Q ss_pred eccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEE
Q psy952 125 LKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 125 l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~ 201 (573)
|+..+.- .+.++|+. .|.+..+- +..-.|...+++ ++..+++ ..+..| .+|.+|+.+..|-++ ..+|.|.
T Consensus 91 iL~Rftlp~r~~~v~g-~g~~iaag-sdD~~vK~~~~~D~s~~~~l----rgh~apVl~l~~~p~~~fLAvs-s~dG~v~ 163 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSG-SGKMIAAG-SDDTAVKLLNLDDSSQEKVL----RGHDAPVLQLSYDPKGNFLAVS-SCDGKVQ 163 (933)
T ss_pred eeeeeeccceEEEEec-CCcEEEee-cCceeEEEEeccccchheee----cccCCceeeeeEcCCCCEEEEE-ecCceEE
Confidence 6655544 57788887 45554444 234456666655 4444443 344455 478888655555444 3566777
Q ss_pred EEeCC
Q psy952 202 SVDLD 206 (573)
Q Consensus 202 ~~~~d 206 (573)
..+++
T Consensus 164 iw~~~ 168 (933)
T KOG1274|consen 164 IWDLQ 168 (933)
T ss_pred EEEcc
Confidence 77665
No 182
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=91.05 E-value=21 Score=36.94 Aligned_cols=106 Identities=16% Similarity=0.150 Sum_probs=60.9
Q ss_pred CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952 141 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP 220 (573)
Q Consensus 141 ~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~ 220 (573)
.+.||++.. ...++..++.... ++. ......+..++++ +++||+.+ ..+.|..++.+......-.....-.
T Consensus 241 ~~~vy~~~~--~g~l~a~d~~tG~--~~W--~~~~~~~~~p~~~--~~~vyv~~-~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 241 GGQVYAVSY--QGRVAALDLRSGR--VLW--KRDASSYQGPAVD--DNRLYVTD-ADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred CCEEEEEEc--CCEEEEEECCCCc--EEE--eeccCCccCceEe--CCEEEEEC-CCCeEEEEECCCCcEEEccccccCC
Confidence 578888774 4567777764222 222 1223334455555 78999986 4678889888543321111110001
Q ss_pred eeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 221 HVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
...+.++.++.||..+ .++.|+.++..+|+....+
T Consensus 312 ~~ssp~i~g~~l~~~~-~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 312 QLTAPAVVGGYLVVGD-FEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ccccCEEECCEEEEEe-CCCEEEEEECCCCCEEEEE
Confidence 1123345688899886 4578888888888765443
No 183
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.01 E-value=26 Score=37.91 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=22.0
Q ss_pred EEeeeCCeEEEecCCCCceEEEeccCCcceE
Q psy952 224 ALTLFEDHIYWTDWNTKSINRADKFNGRDYR 254 (573)
Q Consensus 224 ~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~ 254 (573)
.+++.++.||+.+ ..+.|+.+++.+|+.+-
T Consensus 401 ~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW 430 (488)
T cd00216 401 SLATAGNLVFAGA-ADGYFRAFDATTGKELW 430 (488)
T ss_pred ceEecCCeEEEEC-CCCeEEEEECCCCceee
Confidence 3556778888877 56788888888887553
No 184
>KOG0650|consensus
Probab=91.01 E-value=8.7 Score=41.17 Aligned_cols=72 Identities=13% Similarity=0.230 Sum_probs=51.7
Q ss_pred CCcceEEEeCCCceEEEEecCCcCeEEEEeccCC-CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC
Q psy952 130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS-NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGK 208 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~-~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~ 208 (573)
..|..+.++|..-+||++.. ..|...++.-. ..+.+. ++..|-..|+|++.+++|+... ..+++-.+++|-+
T Consensus 567 G~vq~v~FHPs~p~lfVaTq---~~vRiYdL~kqelvKkL~---tg~kwiS~msihp~GDnli~gs-~d~k~~WfDldls 639 (733)
T KOG0650|consen 567 GLVQRVKFHPSKPYLFVATQ---RSVRIYDLSKQELVKKLL---TGSKWISSMSIHPNGDNLILGS-YDKKMCWFDLDLS 639 (733)
T ss_pred CceeEEEecCCCceEEEEec---cceEEEehhHHHHHHHHh---cCCeeeeeeeecCCCCeEEEec-CCCeeEEEEcccC
Confidence 34889999999999999983 33444444322 223333 6778889999999888888764 5677888888854
No 185
>KOG0279|consensus
Probab=90.85 E-value=17 Score=35.43 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=125.0
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-----eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCC-
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-----ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT- 120 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-----~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~- 120 (573)
+.+++.-.....+|++-.....|...++...+. ...+...-+.+.++++-. .++.+++-+..+.+..-++.+.
T Consensus 18 Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~ 96 (315)
T KOG0279|consen 18 VTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGE 96 (315)
T ss_pred EEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEcc-CCceEEeccccceEEEEEecCCc
Confidence 455665555556666666666666666654321 112222245677788764 4566777777788888898764
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCC-CCCCceEEEeccCCeEEEEeCCC-C
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD-IAWPNALTLDYFTERLYWADAHL-D 198 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~-l~~P~glaiD~~~~~LYw~D~~~-~ 198 (573)
..+.+........++||++.+..| ++-. +...|.-.+.-|.-..++. ... -.|.+-+.+.|.+...|++.... +
T Consensus 97 ~t~~f~GH~~dVlsva~s~dn~qi-vSGS-rDkTiklwnt~g~ck~t~~--~~~~~~WVscvrfsP~~~~p~Ivs~s~Dk 172 (315)
T KOG0279|consen 97 STRRFVGHTKDVLSVAFSTDNRQI-VSGS-RDKTIKLWNTLGVCKYTIH--EDSHREWVSCVRFSPNESNPIIVSASWDK 172 (315)
T ss_pred EEEEEEecCCceEEEEecCCCcee-ecCC-CcceeeeeeecccEEEEEe--cCCCcCcEEEEEEcCCCCCcEEEEccCCc
Confidence 444555677788999999966554 4442 3456766666666655665 333 67778888888776666666654 4
Q ss_pred eEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 199 YIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
.+..-++++-..+.-..+. ......+++ .++.|-.+-.+.+.++--+...++....+
T Consensus 173 tvKvWnl~~~~l~~~~~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTFIGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred eEEEEccCCcchhhccccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 5666677775544333232 345556666 34556555555666666666666654443
No 186
>KOG1407|consensus
Probab=90.79 E-value=16 Score=35.20 Aligned_cols=208 Identities=10% Similarity=0.133 Sum_probs=108.9
Q ss_pred eeeCCCCCCEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-
Q psy952 9 CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS- 87 (573)
Q Consensus 9 C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~- 87 (573)
|.+ +.+..|...+....|++.+.-.......+..-..-+-+.|-+.++++-+.+... .|.-++.... ..+....+
T Consensus 72 w~~-~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD-~it~id~r~~--~~~~~~~~~ 147 (313)
T KOG1407|consen 72 WDP-KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDD-RITFIDARTY--KIVNEEQFK 147 (313)
T ss_pred eCC-CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcc-cEEEEEeccc--ceeehhccc
Confidence 443 345556665667788888886555444333333334566777777777766544 3443333221 11111111
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~ 166 (573)
....-++.. ..+.|||...+.|.|+++......+ ..|-....+-.-|.+||.++++ +-.+..+.+.--+++-..-.
T Consensus 148 ~e~ne~~w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~Gryf--A~GsADAlvSLWD~~ELiC~ 224 (313)
T KOG1407|consen 148 FEVNEISWN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYF--ATGSADALVSLWDVDELICE 224 (313)
T ss_pred ceeeeeeec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceE--eeccccceeeccChhHhhhh
Confidence 233445554 6788999999999999988653222 2233344566789999965543 32222222222223322222
Q ss_pred EEEecCCCCCCCc-eEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeCC
Q psy952 167 RILTHEDDIAWPN-ALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFED 230 (573)
Q Consensus 167 ~l~~~~~~l~~P~-glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~ 230 (573)
..+ +.+.||. .|.+.+. +++.-+-+....|-.+... |.....|.... .-+.+|....
T Consensus 225 R~i---sRldwpVRTlSFS~d-g~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk 283 (313)
T KOG1407|consen 225 RCI---SRLDWPVRTLSFSHD-GRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPK 283 (313)
T ss_pred eee---ccccCceEEEEeccC-cceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCC
Confidence 233 5788884 6777754 4444333444556555554 44344443321 2355665543
No 187
>KOG3509|consensus
Probab=90.44 E-value=0.39 Score=54.65 Aligned_cols=79 Identities=33% Similarity=0.759 Sum_probs=64.2
Q ss_pred CCCCCCCCCCceecCCCcccCCCcccCCCCCCCCCCCCCCCccC--CcCCCCCCcCCCCCCCccccCCccccCCCCCCCC
Q psy952 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR--QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRD 482 (573)
Q Consensus 405 C~~~~C~~~~~f~C~~g~ci~~~~~Cd~~~dC~d~sDE~~~~C~--~~~C~~~~~~C~~~~~~~c~~~~~~Cdg~~dC~d 482 (573)
+..+.++++ +|+|.++++.-.-+.||....|+.++.+....+. ...|.+.++.|.. ..++.+.+..|+|.++|.+
T Consensus 27 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~--~~~~~~~~~~~~g~~~~~~ 103 (964)
T KOG3509|consen 27 AIGSACSPN-EFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRD--RLRCNPQSFQCDGTNDCKD 103 (964)
T ss_pred cccccCCcc-hhccCCccccCchhhhccccccCCCCCcCCccccccccccCCccccccc--chhcCCccccccCCCCCCc
Confidence 334567788 9999999999999999999999999966552222 2347788899985 3478889999999999999
Q ss_pred CCCC
Q psy952 483 GSDE 486 (573)
Q Consensus 483 ~sDe 486 (573)
+++|
T Consensus 104 ~~~~ 107 (964)
T KOG3509|consen 104 GSDE 107 (964)
T ss_pred cchh
Confidence 9999
No 188
>KOG4649|consensus
Probab=90.38 E-value=18 Score=34.98 Aligned_cols=125 Identities=13% Similarity=0.066 Sum_probs=69.3
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC-eEEEEEcCCCceeEe
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK-QLDVAELDGTNRKTL 125 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~-~I~~~~ldg~~~~~l 125 (573)
-.-.++|++.++|||-.+-..+|.-.. ++...+ +.+--.++.|||.+..+| .|+.+..-+....
T Consensus 33 ~~~~avd~~sG~~~We~ilg~RiE~sa--------~vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~-- 97 (354)
T KOG4649|consen 33 GIVIAVDPQSGNLIWEAILGVRIECSA--------IVVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV-- 97 (354)
T ss_pred ceEEEecCCCCcEEeehhhCceeeeee--------EEECCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc--
Confidence 345678899999999876655554321 222221 555667899999998777 6666554432210
Q ss_pred ccCCCCcceEEEeCCCceEEEE---------ecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC
Q psy952 126 KTAIQDPRGITLHPGIGYVYFS---------SWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH 196 (573)
Q Consensus 126 ~~~~~~P~~Iavdp~~g~LYwt---------d~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~ 196 (573)
.-.+|+..|.||.. |..+...|++....|+. + .+-+|++-.+.||+|-.
T Consensus 98 --------~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~---f----------~sP~i~~g~~sly~a~t- 155 (354)
T KOG4649|consen 98 --------RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT---F----------VSPVIAPGDGSLYAAIT- 155 (354)
T ss_pred --------ceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce---e----------ccceecCCCceEEEEec-
Confidence 11244445555544 33333344443333321 1 12356766788998864
Q ss_pred CCeEEEEeCCCC
Q psy952 197 LDYIASVDLDGK 208 (573)
Q Consensus 197 ~~~I~~~~~dG~ 208 (573)
.+.+.++...-.
T Consensus 156 ~G~vlavt~~~~ 167 (354)
T KOG4649|consen 156 AGAVLAVTKNPY 167 (354)
T ss_pred cceEEEEccCCC
Confidence 455555555433
No 189
>KOG0289|consensus
Probab=90.25 E-value=25 Score=36.39 Aligned_cols=178 Identities=10% Similarity=0.065 Sum_probs=96.4
Q ss_pred CEEEEEecccEEEEEc--CCCceeecccC--CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcce
Q psy952 17 PWLIFSNKYYVRNMSL--DATQYSLVHQD--LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEG 92 (573)
Q Consensus 17 ~~l~~s~~~~I~~i~l--~g~~~~~~~~~--~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~g 92 (573)
.||+.++...-+.+.. +|..+..+... .-.....+|++ ++.||-+-..++.|..+++.......-+...-+.+..
T Consensus 316 eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 316 EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 5777766544444433 35555544332 22367888996 8899999999999999998764422222223356778
Q ss_pred eEEeecCCcEEEEeCCCCeEEEEEcCCC-ceeEe-ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC-CCcEEEE
Q psy952 93 LAVDWVGRKLYWLDRHSKQLDVAELDGT-NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG-SNFTRIL 169 (573)
Q Consensus 93 lavD~~~~~LY~td~~~~~I~~~~ldg~-~~~~l-~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG-~~~~~l~ 169 (573)
|+|.. +|+...+....+.|...||.-. +.+++ +........+.+|....+|-.. +..-.|+...-.- +......
T Consensus 395 i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~k~~k~W~~~~~ 471 (506)
T KOG0289|consen 395 ISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA--GSDLQVYICKKKTKSWTEIKE 471 (506)
T ss_pred EEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee--cceeEEEEEecccccceeeeh
Confidence 88852 3333334445566777776532 22222 3444457889999866666544 3333444443222 1222211
Q ss_pred ecCCCCC-CCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 170 THEDDIA-WPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 170 ~~~~~l~-~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
..... ..+++.+- +.-.|.++...++|.+
T Consensus 472 --~~~~sg~st~v~Fg--~~aq~l~s~smd~~l~ 501 (506)
T KOG0289|consen 472 --LADHSGLSTGVRFG--EHAQYLASTSMDAILR 501 (506)
T ss_pred --hhhcccccceeeec--ccceEEeeccchhheE
Confidence 11221 23344433 5556666665555533
No 190
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=90.17 E-value=32 Score=37.60 Aligned_cols=20 Identities=15% Similarity=0.323 Sum_probs=15.9
Q ss_pred CcceEEEeCCCceEEEEecC
Q psy952 131 DPRGITLHPGIGYVYFSSWN 150 (573)
Q Consensus 131 ~P~~Iavdp~~g~LYwtd~~ 150 (573)
+=.++|+||.++.||+-...
T Consensus 388 ~W~~~A~Dp~~g~~yvp~~~ 407 (527)
T TIGR03075 388 NWQPMAYSPKTGLFYVPANE 407 (527)
T ss_pred CCCCceECCCCCEEEEeccc
Confidence 34579999999999988643
No 191
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=90.10 E-value=27 Score=36.54 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=61.0
Q ss_pred CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccc
Q psy952 141 IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVP 220 (573)
Q Consensus 141 ~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~ 220 (573)
.+.||++.. ...+..+++.... ++- ...+..+..++++ +++||+... .++|+.++.......--.....-.
T Consensus 256 ~~~vy~~~~--~g~l~ald~~tG~--~~W--~~~~~~~~~~~~~--~~~vy~~~~-~g~l~ald~~tG~~~W~~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAY--NGNLVALDLRSGQ--IVW--KREYGSVNDFAVD--GGRIYLVDQ-NDRVYALDTRGGVELWSQSDLLHR 326 (394)
T ss_pred CCEEEEEEc--CCeEEEEECCCCC--EEE--eecCCCccCcEEE--CCEEEEEcC-CCeEEEEECCCCcEEEcccccCCC
Confidence 578888773 4567777664322 233 2233334455554 889999874 578888888644331111110001
Q ss_pred eeEEEeeeCCeEEEecCCCCceEEEeccCCcceE
Q psy952 221 HVFALTLFEDHIYWTDWNTKSINRADKFNGRDYR 254 (573)
Q Consensus 221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~ 254 (573)
...+.++.+++||+.+. .+.|+.++..+|+.+-
T Consensus 327 ~~~sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 327 LLTAPVLYNGYLVVGDS-EGYLHWINREDGRFVA 359 (394)
T ss_pred cccCCEEECCEEEEEeC-CCEEEEEECCCCCEEE
Confidence 12334567899998864 4678888888886543
No 192
>KOG0281|consensus
Probab=89.77 E-value=4.6 Score=40.24 Aligned_cols=208 Identities=11% Similarity=0.090 Sum_probs=118.9
Q ss_pred cccEEEEEcCCCcee-ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCcceeEEeecCCc
Q psy952 24 KYYVRNMSLDATQYS-LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGLEGLAVDWVGRK 101 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~-~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p~glavD~~~~~ 101 (573)
.+.|+..+.....-. ++....+.+.-+.||. +|.++......|...+.+.+.. .+++. .-..+-+|.| ++.
T Consensus 216 DnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlih-HceaVLhlrf---~ng 288 (499)
T KOG0281|consen 216 DNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIH-HCEAVLHLRF---SNG 288 (499)
T ss_pred cCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhh-hcceeEEEEE---eCC
Confidence 355666655543322 2223344567777773 4888888888898888876543 33332 2245556665 456
Q ss_pred EEEEeCCCCeEEEEEcCCCc----eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCC
Q psy952 102 LYWLDRHSKQLDVAELDGTN----RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIA 176 (573)
Q Consensus 102 LY~td~~~~~I~~~~ldg~~----~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~ 176 (573)
+.+|-+..+.|.|-+++... +++|+......+.+-+|. . +.++-.+ ...|..-+++.-. .++|. .
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--k-yIVsASg-DRTikvW~~st~efvRtl~------g 358 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--K-YIVSASG-DRTIKVWSTSTCEFVRTLN------G 358 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--c-eEEEecC-CceEEEEeccceeeehhhh------c
Confidence 77788888899998887654 333444555555555553 3 3344333 4566666665332 22222 2
Q ss_pred CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952 177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250 (573)
Q Consensus 177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g 250 (573)
.-.|||--...++|.++-+..++|...+..-+.--.++.+. ..-..-|. |+++=.++-.+.++|..-+..++
T Consensus 359 HkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGH-EeLvRciR-Fd~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 359 HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH-EELVRCIR-FDNKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred ccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhch-HHhhhhee-ecCceeeeccccceEEEEecccc
Confidence 34688887789999999988899988887643322222221 01112222 34444455556666665554444
No 193
>KOG0263|consensus
Probab=89.76 E-value=24 Score=38.94 Aligned_cols=182 Identities=10% Similarity=0.092 Sum_probs=103.2
Q ss_pred CEEEEEec-ccEEEEEcCCCceeecccCCcce-EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952 17 PWLIFSNK-YYVRNMSLDATQYSLVHQDLLNV-VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA 94 (573)
Q Consensus 17 ~~l~~s~~-~~I~~i~l~g~~~~~~~~~~~~~-~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla 94 (573)
.||+-+.. ..|+-..|+.....+...+...| ..|.|.|. +.-|.+-...+.-..+..+-..+..|+...+..+.-++
T Consensus 464 rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~ 542 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVS 542 (707)
T ss_pred cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC-ceEEEecCCCceeeeeecccCCchhhhcccccccceEE
Confidence 45554443 46666666655444444444444 45777754 44444443444444444555566667777778888899
Q ss_pred EeecCCcEEEEeCCCCeEEEEEc-CCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecC
Q psy952 95 VDWVGRKLYWLDRHSKQLDVAEL-DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHE 172 (573)
Q Consensus 95 vD~~~~~LY~td~~~~~I~~~~l-dg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~ 172 (573)
|.+... .-.|.+...++..-+. .|..++++........+|++.|...+|- ..+....|..-++.+.. ...+.
T Consensus 543 FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La--Sg~ed~~I~iWDl~~~~~v~~l~--- 616 (707)
T KOG0263|consen 543 FHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA--SGDEDGLIKIWDLANGSLVKQLK--- 616 (707)
T ss_pred ECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe--ecccCCcEEEEEcCCCcchhhhh---
Confidence 998443 3334455556665554 4555565555556678999999665553 32345566666665533 33333
Q ss_pred CCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952 173 DDIAWPNALTLDYFTERLYWADAHLDYIASVDLD 206 (573)
Q Consensus 173 ~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d 206 (573)
..-.....|++. .++.+.++....+.|..-++.
T Consensus 617 ~Ht~ti~SlsFS-~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 617 GHTGTIYSLSFS-RDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cccCceeEEEEe-cCCCEEEecCCCCeEEEEEch
Confidence 112334567776 456666666666666555543
No 194
>KOG0308|consensus
Probab=89.72 E-value=19 Score=39.13 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=113.1
Q ss_pred CCCceeeCCCCCCEEEEEe--cccEEEEEcCCCce-------eecc-----cCCcceEEEEEEcCCCEEEEEECCCCeEE
Q psy952 5 DESTCKRRDSIKPWLIFSN--KYYVRNMSLDATQY-------SLVH-----QDLLNVVAMDFHYKENRFYFADVAAKTIY 70 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~-------~~~~-----~~~~~~~~v~~d~~~~~ly~~d~~~~~I~ 70 (573)
|-..|.+......+|+.+. .+.|+..+++.... .+.. .....+.++|.. .++.++++....+-|+
T Consensus 118 DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N-~t~t~ivsGgtek~lr 196 (735)
T KOG0308|consen 118 DYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMN-QTGTIIVSGGTEKDLR 196 (735)
T ss_pred chheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecC-CcceEEEecCcccceE
Confidence 4566777644455666554 47888888873311 1111 122346778766 4667888877777777
Q ss_pred EEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEec
Q psy952 71 RSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 71 ~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~ 149 (573)
.++........-+...-..++.|-++..+.+|.-+ +..+.|.+-+|.-..- .+++-.-....++..+|.-..+|..+
T Consensus 197 ~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~-sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~- 274 (735)
T KOG0308|consen 197 LWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSA-SSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGG- 274 (735)
T ss_pred EeccccccceeeeeccccceEEEEEcCCCCeEeec-CCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecC-
Confidence 77776543332233333577778887766666444 4567888888764332 23333333478889999888888876
Q ss_pred CCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952 150 NLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 150 ~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~ 203 (573)
+...|+|.+|.-....+++ -..-..-.-|.++..+.-+ |+-.....|.+-
T Consensus 275 -rd~~i~~Tdl~n~~~~tli--ck~daPv~~l~~~~~~~~~-WvtTtds~I~rW 324 (735)
T KOG0308|consen 275 -RDGNIYRTDLRNPAKSTLI--CKEDAPVLKLHLHEHDNSV-WVTTTDSSIKRW 324 (735)
T ss_pred -CCCcEEecccCCchhheEe--ecCCCchhhhhhccccCCc-eeeeccccceec
Confidence 4678999999874434443 1211112345554334444 555555555553
No 195
>KOG0772|consensus
Probab=89.71 E-value=23 Score=37.44 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=109.8
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-----ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-----KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-----~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
+-..+.++++|+.+-++| +..-...|..+++.|.. ...|....-+.++.|++...++.|.+.. +...+.+++-
T Consensus 166 gtk~Vsal~~Dp~GaR~~-sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs-g~aqakl~DR 243 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFV-SGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVS-GSAQAKLLDR 243 (641)
T ss_pred CceEEEEeeecCCCceee-eccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEe-cCcceeEEcc
Confidence 334477999998665554 55555678888887743 2233344456788899987777766664 4557778888
Q ss_pred CCCceeEeccC------CCC-------cceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCC--CCCceE
Q psy952 118 DGTNRKTLKTA------IQD-------PRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDI--AWPNAL 181 (573)
Q Consensus 118 dg~~~~~l~~~------~~~-------P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l--~~P~gl 181 (573)
+|........+ +.+ ...-..+|.+...|.|-... .-+|+-.+---+..++|.....+. ..|..-
T Consensus 244 dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC 323 (641)
T KOG0772|consen 244 DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC 323 (641)
T ss_pred CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee
Confidence 88776554432 221 22233477777778776322 235554443344455555211111 234566
Q ss_pred EEeccCCeEEEEeCCCCeEEEEeCCCCcEE--EEEeCCccc--eeEEEee-eCCeEEEecCCCCceEE
Q psy952 182 TLDYFTERLYWADAHLDYIASVDLDGKHKH--IVISGQKVP--HVFALTL-FEDHIYWTDWNTKSINR 244 (573)
Q Consensus 182 aiD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~l~~~~~~~--~p~~ia~-~~~~lywtd~~~~~I~~ 244 (573)
++++ ++.++-+--..+.|..-++.+..++ ..+....++ ....|++ +.+.+..+....+++..
T Consensus 324 ~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 324 AWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred ecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 6664 4445544445677766665332222 222211122 4466666 45555556555555443
No 196
>KOG0272|consensus
Probab=89.57 E-value=27 Score=35.91 Aligned_cols=193 Identities=9% Similarity=0.049 Sum_probs=103.9
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTN-RK 123 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~-~~ 123 (573)
.|+....-...+.++.+-.-.|.....+...-.....+......+.++.+.+.. +.=..|-+..+.+....+++.. ..
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ 255 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh
Confidence 354444444678888888888877777765544444444445788888888873 4444455566666666666642 22
Q ss_pred EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEE
Q psy952 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIA 201 (573)
Q Consensus 124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~ 201 (573)
.|...+.....++++|...+|--+..-..-+|+=+. +..+.+.. ...-....+|++.+ +|-|-.+-.. .++|+
T Consensus 256 ~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~---tk~ElL~Q-EGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvW 330 (459)
T KOG0272|consen 256 DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLE---TKSELLLQ-EGHSKGVFSIAFQP-DGSLAATGGLDSLGRVW 330 (459)
T ss_pred hhhcchhhheeeeecCCCceeeecccccchhhcccc---cchhhHhh-cccccccceeEecC-CCceeeccCccchhhee
Confidence 233466678899999965555333221122232111 11122221 22223335777774 4444443222 12333
Q ss_pred EEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEe
Q psy952 202 SVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 202 ~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~ 246 (573)
|+......+++.+. +...++|++. +|+..-|-...+.+..=+
T Consensus 331 --DlRtgr~im~L~gH-~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 331 --DLRTGRCIMFLAGH-IKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred --ecccCcEEEEeccc-ccceeeEeECCCceEEeecCCCCcEEEee
Confidence 33333333444443 6677888884 566777766555544333
No 197
>KOG0303|consensus
Probab=89.57 E-value=12 Score=38.03 Aligned_cols=159 Identities=13% Similarity=0.107 Sum_probs=92.5
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-ee
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RK 123 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~ 123 (573)
..+.-|+|++.-..+..+-...+.|...++..+..-.-+. .-..+..|.+.+ .+.++.|-....+|.+.+..... +.
T Consensus 132 rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 132 RRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred eeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEee
Confidence 3456688999888888888888889888886544322222 224567778875 56677777777889998875433 22
Q ss_pred Eec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEecCCCCCCCceEE---EeccCCeEEEEeCCC
Q psy952 124 TLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILTHEDDIAWPNALT---LDYFTERLYWADAHL 197 (573)
Q Consensus 124 ~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~~~~~l~~P~gla---iD~~~~~LYw~D~~~ 197 (573)
.-. .+...++.|-+- +|.|+-|-.+..+.-..+-.|-.+. +.+. ...|..-+|+- +|++.+.||.+--+.
T Consensus 210 e~~~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~eP~~--~~elDtSnGvl~PFyD~dt~ivYl~GKGD 285 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLEEPIA--LQELDTSNGVLLPFYDPDTSIVYLCGKGD 285 (472)
T ss_pred ecccccCCCcceeEEec--cCceeeeccccccccceeccCcccccCcce--eEEeccCCceEEeeecCCCCEEEEEecCC
Confidence 221 355557777775 4556666543211111111111110 0111 22333334443 367778888888777
Q ss_pred CeEEEEeCCCCc
Q psy952 198 DYIASVDLDGKH 209 (573)
Q Consensus 198 ~~I~~~~~dG~~ 209 (573)
+.|..+.+.-..
T Consensus 286 ~~IRYyEit~d~ 297 (472)
T KOG0303|consen 286 SSIRYFEITNEP 297 (472)
T ss_pred cceEEEEecCCC
Confidence 878777765544
No 198
>KOG0294|consensus
Probab=89.56 E-value=23 Score=35.08 Aligned_cols=222 Identities=13% Similarity=0.080 Sum_probs=116.3
Q ss_pred ceeeCCCCCCEEEEE-ecccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcceEE--
Q psy952 8 TCKRRDSIKPWLIFS-NKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEKERV-- 82 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s-~~~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~i-- 82 (573)
+|.|..+ +|+.-. +...|+.+++... +.-.++...+.+.++-|+..... =.++-..++.|...+... .+.+
T Consensus 47 tavAVs~--~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~--W~~~~s 122 (362)
T KOG0294|consen 47 TALAVSG--PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS--WELLKS 122 (362)
T ss_pred eEEEecc--eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC--eEEeee
Confidence 4555433 344432 2467888888654 33444555677888888765531 223444567777766642 2222
Q ss_pred EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccC
Q psy952 83 IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDG 162 (573)
Q Consensus 83 ~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG 162 (573)
+...-+.+.+|+|.+ .++|-.+-.+.+.+..-||-...+..+..--..+.-|..+|...+.|+.- ..+|....++-
T Consensus 123 lK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~---~~~i~i~q~d~ 198 (362)
T KOG0294|consen 123 LKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSG---RNKIDIYQLDN 198 (362)
T ss_pred ecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEe---ccEEEEEeccc
Confidence 222335799999997 67788887777777766663222222222222355577777555455443 34555555553
Q ss_pred CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeCC---eEEEecCC
Q psy952 163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFED---HIYWTDWN 238 (573)
Q Consensus 163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~---~lywtd~~ 238 (573)
......+ +.-..+.-++.. ..+.|++.- .+..|...|-| +.....+... -.+..+|+++.+ ++.+|-..
T Consensus 199 A~v~~~i---~~~~r~l~~~~l-~~~~L~vG~-d~~~i~~~D~ds~~~~~~~~AH--~~RVK~i~~~~~~~~~~lvTaSS 271 (362)
T KOG0294|consen 199 ASVFREI---ENPKRILCATFL-DGSELLVGG-DNEWISLKDTDSDTPLTEFLAH--ENRVKDIASYTNPEHEYLVTASS 271 (362)
T ss_pred HhHhhhh---hccccceeeeec-CCceEEEec-CCceEEEeccCCCccceeeecc--hhheeeeEEEecCCceEEEEecc
Confidence 3221111 111223344444 355666542 23566666666 3333332221 234566665433 56666655
Q ss_pred CCceEE
Q psy952 239 TKSINR 244 (573)
Q Consensus 239 ~~~I~~ 244 (573)
.+.|..
T Consensus 272 DG~I~v 277 (362)
T KOG0294|consen 272 DGFIKV 277 (362)
T ss_pred CceEEE
Confidence 565543
No 199
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.49 E-value=30 Score=36.19 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC--
Q psy952 99 GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA-- 176 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~-- 176 (573)
++.||++.. .+.+..+++...... -...+..+..++++ .+.||+... ...|+.++..... .+.. ...+.
T Consensus 256 ~~~vy~~~~-~g~l~ald~~tG~~~-W~~~~~~~~~~~~~--~~~vy~~~~--~g~l~ald~~tG~--~~W~-~~~~~~~ 326 (394)
T PRK11138 256 GGVVYALAY-NGNLVALDLRSGQIV-WKREYGSVNDFAVD--GGRIYLVDQ--NDRVYALDTRGGV--ELWS-QSDLLHR 326 (394)
T ss_pred CCEEEEEEc-CCeEEEEECCCCCEE-EeecCCCccCcEEE--CCEEEEEcC--CCeEEEEECCCCc--EEEc-ccccCCC
Confidence 567787764 456777776432211 11122334445554 578998873 5677777775332 2221 11111
Q ss_pred CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
...+.++. +++||+.+. .+.|+.++.+.... ....... .....+.++.+++||+... .+.|+.+.
T Consensus 327 ~~~sp~v~--~g~l~v~~~-~G~l~~ld~~tG~~~~~~~~~~-~~~~s~P~~~~~~l~v~t~-~G~l~~~~ 392 (394)
T PRK11138 327 LLTAPVLY--NGYLVVGDS-EGYLHWINREDGRFVAQQKVDS-SGFLSEPVVADDKLLIQAR-DGTVYAIT 392 (394)
T ss_pred cccCCEEE--CCEEEEEeC-CCEEEEEECCCCCEEEEEEcCC-CcceeCCEEECCEEEEEeC-CceEEEEe
Confidence 11223332 788998864 56788887753332 2211111 1122334467889999853 45666654
No 200
>KOG4441|consensus
Probab=89.42 E-value=22 Score=39.21 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=93.0
Q ss_pred cEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC
Q psy952 26 YVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR 100 (573)
Q Consensus 26 ~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~ 100 (573)
.+.+++....+.+.+.+-...-.+++.-...+.||.+--.. ..|.+++......+.+..-. ..-.+.++=..++
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~-~~r~~~gv~~~~g 428 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML-TRRSGHGVAVLGG 428 (571)
T ss_pred eEEEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCC-cceeeeEEEEECC
Confidence 35566665555544322222222334444589999986433 36888888776666544222 2344555556789
Q ss_pred cEEEEeC------CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCC----cCeEEEEeccCCCcEEEEe
Q psy952 101 KLYWLDR------HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL----QAYIGKIGMDGSNFTRILT 170 (573)
Q Consensus 101 ~LY~td~------~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~----~~~I~r~~ldG~~~~~l~~ 170 (573)
+||.+-. ...+++++++....-+.+.+-...-.+..+...++.||+.-... ..++++.+.....-..+.
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~- 507 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA- 507 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-
Confidence 9999864 23577888887665554443222222333444589999985321 235788877655443332
Q ss_pred cCCCCCCC---ceEEEeccCCeEEEEeC
Q psy952 171 HEDDIAWP---NALTLDYFTERLYWADA 195 (573)
Q Consensus 171 ~~~~l~~P---~glaiD~~~~~LYw~D~ 195 (573)
.+..| .|+++. +++||+.-.
T Consensus 508 ---~m~~~rs~~g~~~~--~~~ly~vGG 530 (571)
T KOG4441|consen 508 ---PMTSPRSAVGVVVL--GGKLYAVGG 530 (571)
T ss_pred ---cCccccccccEEEE--CCEEEEEec
Confidence 23223 356665 899998754
No 201
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.26 E-value=15 Score=38.12 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=80.1
Q ss_pred cCCcEEEEeCCCCeEEEEEcCCCceeE---ec---cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec-cCCCcEEEEe
Q psy952 98 VGRKLYWLDRHSKQLDVAELDGTNRKT---LK---TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-DGSNFTRILT 170 (573)
Q Consensus 98 ~~~~LY~td~~~~~I~~~~ldg~~~~~---l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l-dG~~~~~l~~ 170 (573)
..+++|+. ...+.|..+++++....= +. ..+..|..++ .|.||+.++. .+++..++ +|...=...
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~--g~~y~ld~~~G~~~W~~~- 138 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWD--GKLYALDASTGTLVWSRN- 138 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEeccc--ceEEEEECCCCcEEEEEe-
Confidence 35777776 334567777776544221 11 1222233333 6889999864 37888888 676543332
Q ss_pred cCCC-CCCCceEEEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCC--ccceeEEEeeeCCeEEEecCC-CCceEEE
Q psy952 171 HEDD-IAWPNALTLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQ--KVPHVFALTLFEDHIYWTDWN-TKSINRA 245 (573)
Q Consensus 171 ~~~~-l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~--~~~~p~~ia~~~~~lywtd~~-~~~I~~~ 245 (573)
... +.+..+..+ .++.+|+.. ..+.++.++.+ |..+-..-... .+....+.++.++.+|++... +..++.+
T Consensus 139 -~~~~~~~~~~~v~--~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~ 214 (370)
T COG1520 139 -VGGSPYYASPPVV--GDGTVYVGT-DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYAL 214 (370)
T ss_pred -cCCCeEEecCcEE--cCcEEEEec-CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEE
Confidence 222 112223333 367788764 45788888887 65543322210 122222333678888988553 4468888
Q ss_pred eccCCcce
Q psy952 246 DKFNGRDY 253 (573)
Q Consensus 246 ~~~~g~~~ 253 (573)
+..+|...
T Consensus 215 ~~~~G~~~ 222 (370)
T COG1520 215 NAEDGTLK 222 (370)
T ss_pred EccCCcEe
Confidence 87777654
No 202
>KOG0276|consensus
Probab=89.16 E-value=37 Score=36.86 Aligned_cols=156 Identities=12% Similarity=0.064 Sum_probs=85.5
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR 122 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~ 122 (573)
...+-+|+++|.+-.+.-+ .-+|.+...+.+... ...+-...+ -++.-.|= ...+-.++-+....|.+++.+...+
T Consensus 13 SdRVKsVd~HPtePw~la~-LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-aRknWiv~GsDD~~IrVfnynt~ek 89 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAA-LYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-ARKNWIVTGSDDMQIRVFNYNTGEK 89 (794)
T ss_pred CCceeeeecCCCCceEEEe-eecCeeEEEecccceeeeeeeeccc-chhhheee-eccceEEEecCCceEEEEeccccee
Confidence 3445677777655444333 334455555544321 111211111 11222221 2345556777788999999986543
Q ss_pred -eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952 123 -KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 123 -~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~ 201 (573)
+++-......|.|||+|..-++. ..++.-.|..-+.++......+- +..-+....+++.|.+..-|.+-.-.++|-
T Consensus 90 V~~FeAH~DyIR~iavHPt~P~vL--tsSDDm~iKlW~we~~wa~~qtf-eGH~HyVMqv~fnPkD~ntFaS~sLDrTVK 166 (794)
T KOG0276|consen 90 VKTFEAHSDYIRSIAVHPTLPYVL--TSSDDMTIKLWDWENEWACEQTF-EGHEHYVMQVAFNPKDPNTFASASLDRTVK 166 (794)
T ss_pred eEEeeccccceeeeeecCCCCeEE--ecCCccEEEEeeccCceeeeeEE-cCcceEEEEEEecCCCccceeeeeccccEE
Confidence 44446777799999999654433 32345566666666655333220 333445568888888887777766555444
Q ss_pred EEeC
Q psy952 202 SVDL 205 (573)
Q Consensus 202 ~~~~ 205 (573)
.-.+
T Consensus 167 VWsl 170 (794)
T KOG0276|consen 167 VWSL 170 (794)
T ss_pred EEEc
Confidence 4444
No 203
>KOG4649|consensus
Probab=89.01 E-value=21 Score=34.56 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=72.3
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 167 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~ 167 (573)
+.-.-+|||+..++|||--.-..+|+-... ++.++ ++|--.+|.|||.+......|+....-+....
T Consensus 31 Hs~~~~avd~~sG~~~We~ilg~RiE~sa~-------vvgdf-----VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~- 97 (354)
T KOG4649|consen 31 HSGIVIAVDPQSGNLIWEAILGVRIECSAI-------VVGDF-----VVLGCYSGGLYFLCVKTGSQIWNFVILETVKV- 97 (354)
T ss_pred CCceEEEecCCCCcEEeehhhCceeeeeeE-------EECCE-----EEEEEccCcEEEEEecchhheeeeeehhhhcc-
Confidence 344568999999999998776677764221 11111 55666788999998765556665543332211
Q ss_pred EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe----CCccceeEEEeeeCCeEEEecCCCCceE
Q psy952 168 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS----GQKVPHVFALTLFEDHIYWTDWNTKSIN 243 (573)
Q Consensus 168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~----~~~~~~p~~ia~~~~~lywtd~~~~~I~ 243 (573)
.-..|++++.||- -+.++..+..|+....- +.. +..+..| .|+.-.+.||++- ..++|.
T Consensus 98 ------------~a~~d~~~glIyc-gshd~~~yalD~~~~~c--VykskcgG~~f~sP-~i~~g~~sly~a~-t~G~vl 160 (354)
T KOG4649|consen 98 ------------RAQCDFDGGLIYC-GSHDGNFYALDPKTYGC--VYKSKCGGGTFVSP-VIAPGDGSLYAAI-TAGAVL 160 (354)
T ss_pred ------------ceEEcCCCceEEE-ecCCCcEEEecccccce--EEecccCCceeccc-eecCCCceEEEEe-ccceEE
Confidence 1123333333332 23333444433322111 111 1101111 2333456788875 347788
Q ss_pred EEeccCCcceEEE
Q psy952 244 RADKFNGRDYRVL 256 (573)
Q Consensus 244 ~~~~~~g~~~~~l 256 (573)
++++.++...+..
T Consensus 161 avt~~~~~~~~~w 173 (354)
T KOG4649|consen 161 AVTKNPYSSTEFW 173 (354)
T ss_pred EEccCCCCcceeh
Confidence 8888777554444
No 204
>KOG0294|consensus
Probab=88.97 E-value=26 Score=34.80 Aligned_cols=210 Identities=12% Similarity=0.079 Sum_probs=105.7
Q ss_pred CcceEEEEEEcCCCEEEEEEC-CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC--cEEEEeCCCCeEEEEEcCCC
Q psy952 44 LLNVVAMDFHYKENRFYFADV-AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR--KLYWLDRHSKQLDVAELDGT 120 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~--~LY~td~~~~~I~~~~ldg~ 120 (573)
...+.+||++. .|++.. ....|..+++......-.+....+.+..|.++.-.. +| .+-+..|.|.+.+...-
T Consensus 43 ~~sitavAVs~----~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shL-lS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 43 AGSITALAVSG----PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHL-LSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccceeEEEecc----eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhhe-eeecCCCcEEEEEcCCe
Confidence 34577888763 566554 456899999875433222222346788888875432 33 34445677777665432
Q ss_pred c-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec-cCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952 121 N-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM-DGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD 198 (573)
Q Consensus 121 ~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l-dG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~ 198 (573)
. ...+-..-....+|+|+| .+.|-.+-.+ ...+..-+| .|....++- --..|.-+.+++.+.+.|+.- .+
T Consensus 118 ~~~~slK~H~~~Vt~lsiHP-S~KLALsVg~-D~~lr~WNLV~Gr~a~v~~----L~~~at~v~w~~~Gd~F~v~~--~~ 189 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHP-SGKLALSVGG-DQVLRTWNLVRGRVAFVLN----LKNKATLVSWSPQGDHFVVSG--RN 189 (362)
T ss_pred EEeeeecccccccceeEecC-CCceEEEEcC-CceeeeehhhcCccceeec----cCCcceeeEEcCCCCEEEEEe--cc
Confidence 1 122334445589999999 6777666533 333433333 343322221 123345577777666666543 45
Q ss_pred eEEEEeCCCCcEEEEEeCCccceeEEEeee-CCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeee
Q psy952 199 YIASVDLDGKHKHIVISGQKVPHVFALTLF-EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVY 269 (573)
Q Consensus 199 ~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~ 269 (573)
+|..+.++-...-..+... ..+.-+.+. ++.|++. ..+..|...+-.++.....+.....+..+|+.|
T Consensus 190 ~i~i~q~d~A~v~~~i~~~--~r~l~~~~l~~~~L~vG-~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 190 KIDIYQLDNASVFREIENP--KRILCATFLDGSELLVG-GDNEWISLKDTDSDTPLTEFLAHENRVKDIASY 258 (362)
T ss_pred EEEEEecccHhHhhhhhcc--ccceeeeecCCceEEEe-cCCceEEEeccCCCccceeeecchhheeeeEEE
Confidence 6666655543321111111 233444443 4445444 233455554433333333333323333344433
No 205
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=88.76 E-value=25 Score=34.34 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=109.5
Q ss_pred ceEEEEEEcCCCEEEEEE--CCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEE--EcCCCc
Q psy952 46 NVVAMDFHYKENRFYFAD--VAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA--ELDGTN 121 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d--~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~--~ldg~~ 121 (573)
.+..+++.+..+.+.++. .....++....++.....+... ....-++|.. +.|+..+.......+. ..+|..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~---~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG---SLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC---ccccccccCC-CCEEEEEcCCCceEEEEecCCCcc
Confidence 466777777777777766 5566788887765544433222 3344467865 6777776554444333 234544
Q ss_pred eeEec--cCCC-CcceEEEeCCCceEE-EEecCCcCeEEEEec--cCCC-cEEEEe----cCCCCCCCceEEEeccCCeE
Q psy952 122 RKTLK--TAIQ-DPRGITLHPGIGYVY-FSSWNLQAYIGKIGM--DGSN-FTRILT----HEDDIAWPNALTLDYFTERL 190 (573)
Q Consensus 122 ~~~l~--~~~~-~P~~Iavdp~~g~LY-wtd~~~~~~I~r~~l--dG~~-~~~l~~----~~~~l~~P~glaiD~~~~~L 190 (573)
..+.+ ..+. ....|.|.|..-+|- +...+...+|+.... ++.. ...+.. ....+.....++.-.....+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~ 180 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV 180 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence 44333 2333 678999999765544 443233455555432 3322 222221 01223344566666444444
Q ss_pred EEEeCCCCeEEE-EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcccC
Q psy952 191 YWADAHLDYIAS-VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTT 260 (573)
Q Consensus 191 Yw~D~~~~~I~~-~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~ 260 (573)
..+......+.. +..+|...+.+.....-....+++-....+|.++ .+.|++ ...+...+.+....
T Consensus 181 V~~~~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t~--~~~~~~--~~~~~~W~~v~~~~ 247 (253)
T PF10647_consen 181 VLGRSAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVTD--DGGVLQ--SRSGASWREVPGGV 247 (253)
T ss_pred EEeCCCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEEC--CCcEEE--CCCCCcceEccCCC
Confidence 444444444555 8888887766633210112233333456688886 345654 45666666655443
No 206
>KOG0263|consensus
Probab=88.75 E-value=43 Score=37.11 Aligned_cols=190 Identities=12% Similarity=0.120 Sum_probs=106.6
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC---eEEEEEcCCCce
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK---QLDVAELDGTNR 122 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~---~I~~~~ldg~~~ 122 (573)
.+.+..|.+.+ ++.++-.....++-..++.-.-.++....+.-+..+.|-+ +-.||+-.... +++..+.. .-.
T Consensus 453 PVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~-~Pl 528 (707)
T KOG0263|consen 453 PVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHN-KPL 528 (707)
T ss_pred ceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccC-Cch
Confidence 36688888744 4455555666777777765444444444443444556654 34677664433 34433331 222
Q ss_pred eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE-eccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI-GMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~-~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~ 201 (573)
++++..+.+..-++++|...||. |. +....+..- ...|..++++. ..-.....|++.+.+..|- +-...+.|.
T Consensus 529 RifaghlsDV~cv~FHPNs~Y~a-TG-SsD~tVRlWDv~~G~~VRiF~---GH~~~V~al~~Sp~Gr~La-Sg~ed~~I~ 602 (707)
T KOG0263|consen 529 RIFAGHLSDVDCVSFHPNSNYVA-TG-SSDRTVRLWDVSTGNSVRIFT---GHKGPVTALAFSPCGRYLA-SGDEDGLIK 602 (707)
T ss_pred hhhcccccccceEEECCcccccc-cC-CCCceEEEEEcCCCcEEEEec---CCCCceEEEEEcCCCceEe-ecccCCcEE
Confidence 44557888889999999655443 32 222222221 23355554443 3222335788886443332 333456777
Q ss_pred EEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEEe
Q psy952 202 SVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 202 ~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~~ 246 (573)
.-++.++.+.....+. ....++|.+ .++.++++....+.|..-+
T Consensus 603 iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 603 IWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred EEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 7777765554333333 456778887 5778888888877776443
No 207
>KOG2048|consensus
Probab=88.66 E-value=41 Score=36.75 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=101.9
Q ss_pred cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952 40 VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAE 116 (573)
Q Consensus 40 ~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~ 116 (573)
..+...++.--+..+..+.|-+.-...-+|||+..++......+... +.....|.+-..+++|++.......++.+.
T Consensus 378 ~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~e 457 (691)
T KOG2048|consen 378 FTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFE 457 (691)
T ss_pred ecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEE
Confidence 34566677788888989999988888889999999873222222111 122333344334566666655556788888
Q ss_pred cCCCceeEecc-----CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEe-ccCCe
Q psy952 117 LDGTNRKTLKT-----AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLD-YFTER 189 (573)
Q Consensus 117 ldg~~~~~l~~-----~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD-~~~~~ 189 (573)
+++...+.+.. ......-|++.|...||-.++ ..+.|...++.+.....++ ..+..+ .+.++. ...++
T Consensus 458 l~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--t~g~I~v~nl~~~~~~~l~---~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 458 LETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--TRGQIFVYNLETLESHLLK---VRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred ecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--ccceEEEEEcccceeecch---hccCcceeeeeccccccCc
Confidence 88777666552 223367899999888888777 4678999999887766655 222221 344444 33466
Q ss_pred EEEEeCCCCeEEEEeC
Q psy952 190 LYWADAHLDYIASVDL 205 (573)
Q Consensus 190 LYw~D~~~~~I~~~~~ 205 (573)
|-++++. +.|+.+++
T Consensus 533 lvvats~-nQv~efdi 547 (691)
T KOG2048|consen 533 LVVATSN-NQVFEFDI 547 (691)
T ss_pred EEEEecC-CeEEEEec
Confidence 7766653 45566665
No 208
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=88.58 E-value=24 Score=33.86 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=41.9
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC----C-CCcceeEEeecCCcEEEE
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD----S-HGLEGLAVDWVGRKLYWL 105 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~----~-~~p~glavD~~~~~LY~t 105 (573)
.....||+|-+.+++||-.. ..++||.++........+-... + ..+.++.|.+..++|.+.
T Consensus 26 ge~l~GID~Rpa~G~LYgl~-~~g~lYtIn~~tG~aT~vg~s~~~~al~g~~~gvDFNP~aDRlRvv 91 (236)
T PF14339_consen 26 GESLVGIDFRPANGQLYGLG-STGRLYTINPATGAATPVGASPLTVALSGTAFGVDFNPAADRLRVV 91 (236)
T ss_pred CCeEEEEEeecCCCCEEEEe-CCCcEEEEECCCCeEEEeecccccccccCceEEEecCcccCcEEEE
Confidence 35689999999999999984 4578999998766554441111 1 345666776766655554
No 209
>KOG3914|consensus
Probab=88.51 E-value=9.5 Score=38.80 Aligned_cols=160 Identities=12% Similarity=0.039 Sum_probs=101.3
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEec---cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEecc-C
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLK---TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMD-G 162 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~---~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ld-G 162 (573)
.+..+.+...++.||+++... ++.++.+.++.. ..++ ..-..|.+|.+......+-+++... ...+.....+ |
T Consensus 64 a~~~~~~s~~~~llAv~~~~K-~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSK-QRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred cccccccCCCceEEEEEeCCC-ceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 344444555567788888654 455566655543 2222 2445688998888777788887432 2233333333 4
Q ss_pred CCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEEecCCCCc
Q psy952 163 SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYWTDWNTKS 241 (573)
Q Consensus 163 ~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~ 241 (573)
..+.++ ..+..-..+++.++...|.-+| ...+|+...+.+... +.+..+. -.....|++..+++.|+-.+.+.
T Consensus 143 ~~~~~l----GhvSml~dVavS~D~~~IitaD-RDEkIRvs~ypa~f~IesfclGH-~eFVS~isl~~~~~LlS~sGD~t 216 (390)
T KOG3914|consen 143 RCEPIL----GHVSMLLDVAVSPDDQFIITAD-RDEKIRVSRYPATFVIESFCLGH-KEFVSTISLTDNYLLLSGSGDKT 216 (390)
T ss_pred Ccchhh----hhhhhhheeeecCCCCEEEEec-CCceEEEEecCcccchhhhcccc-HhheeeeeeccCceeeecCCCCc
Confidence 443332 3444457888988888888777 456788888877654 2222222 23467899999999999999999
Q ss_pred eEEEeccCCcceEE
Q psy952 242 INRADKFNGRDYRV 255 (573)
Q Consensus 242 I~~~~~~~g~~~~~ 255 (573)
|+.=+..+|+...+
T Consensus 217 lr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 217 LRLWDITSGKLLDT 230 (390)
T ss_pred EEEEecccCCcccc
Confidence 98878778876544
No 210
>KOG0646|consensus
Probab=88.40 E-value=35 Score=35.59 Aligned_cols=151 Identities=8% Similarity=0.080 Sum_probs=85.8
Q ss_pred ceeeCCCCCCEEEEEe--cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC------C-
Q psy952 8 TCKRRDSIKPWLIFSN--KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS------T- 77 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g------~- 77 (573)
+|.+.. +.++++++. ...|+-..+..+.+ ..+......+.-|.|. .++..+++....+.|..+.+-. .
T Consensus 85 ~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~ 162 (476)
T KOG0646|consen 85 HALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDH 162 (476)
T ss_pred eeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCC
Confidence 455543 556666655 57888888875543 3333445567778786 5778888888888777665421 1
Q ss_pred cceE--EEcCCCCCcceeEEeec--CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcC
Q psy952 78 EKER--VIRHDSHGLEGLAVDWV--GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQA 153 (573)
Q Consensus 78 ~~~~--i~~~~~~~p~glavD~~--~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~ 153 (573)
.+.. ++...--.+..|.++.- +.+||-+ +..+.|.+.++.+...-.-+.-...+.++||||....+|+-. ..+
T Consensus 163 ~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta-S~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt--~~G 239 (476)
T KOG0646|consen 163 SVKPLHIFSDHTLSITDLQIGSGGTNARLYTA-SEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT--EEG 239 (476)
T ss_pred CccceeeeccCcceeEEEEecCCCccceEEEe-cCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC--Ccc
Confidence 1111 11111124445555432 2344433 344566666665443211112334589999999998898865 356
Q ss_pred eEEEEeccCC
Q psy952 154 YIGKIGMDGS 163 (573)
Q Consensus 154 ~I~r~~ldG~ 163 (573)
.|+...+.+.
T Consensus 240 ~I~~~~~~~~ 249 (476)
T KOG0646|consen 240 KIFQNLLFKL 249 (476)
T ss_pred eEEeeehhcC
Confidence 7776666543
No 211
>KOG2139|consensus
Probab=88.10 E-value=32 Score=34.83 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=111.5
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC---CCce
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD---GTNR 122 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld---g~~~ 122 (573)
.+..|.+......|-=+......|...+.+.+....+...+++...-|-..+.+..||-+--. +...+-+.. ...+
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d-avfrlw~e~q~wt~er 275 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD-AVFRLWQENQSWTKER 275 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc-ceeeeehhcccceecc
Confidence 367899987655555556677789989988776666665566666666677766666665422 212221111 2222
Q ss_pred eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE----------EEEec------CCC----CCCCceEE
Q psy952 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT----------RILTH------EDD----IAWPNALT 182 (573)
Q Consensus 123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~----------~l~~~------~~~----l~~P~gla 182 (573)
-.+.++ ...+-.-+|...+|.++-.+ .+.|++...++.... .++.. ..+ -..+.-||
T Consensus 276 w~lgsg--rvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la 352 (445)
T KOG2139|consen 276 WILGSG--RVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA 352 (445)
T ss_pred eeccCC--ceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence 222233 44555567888888888755 678888887765321 11110 011 23456799
Q ss_pred EeccCCeEEEEeCCCC-------eEEEEeCCCCcEEEEE-eCC-ccceeEEEee----eCCeEEEecCCCCceEEEe
Q psy952 183 LDYFTERLYWADAHLD-------YIASVDLDGKHKHIVI-SGQ-KVPHVFALTL----FEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~-------~I~~~~~dG~~~~~l~-~~~-~~~~p~~ia~----~~~~lywtd~~~~~I~~~~ 246 (573)
.|+.+.+|-++=-+.. .|.+++..-+....+. -+. .-++|.-|.+ .++.|.-.-|.+++|.+..
T Consensus 353 wDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~yp 429 (445)
T KOG2139|consen 353 WDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYP 429 (445)
T ss_pred ECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeee
Confidence 9999999888755444 2334333333222222 111 1245666654 2455666677777776654
No 212
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=87.94 E-value=4.5 Score=43.29 Aligned_cols=107 Identities=14% Similarity=0.055 Sum_probs=65.1
Q ss_pred CCcceEEEEEEcCCCEEEEEECCC----------------CeEEEEEcCCC-------cceEEEcCC-------------
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAA----------------KTIYRSRVGST-------EKERVIRHD------------- 86 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~----------------~~I~~~~~~g~-------~~~~i~~~~------------- 86 (573)
.+..|..|++.+..+.||++..++ +.|+|+...+. ..+.++..+
T Consensus 415 ~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~ 494 (616)
T COG3211 415 PMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANI 494 (616)
T ss_pred cccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCc
Confidence 456799999999999999986543 47888877553 223232211
Q ss_pred ----CCCcceeEEeecCCcEEEEeCCC----CeE---EEEE-cCCCc--eeEecc--CCCCcceEEEeCCCceEEEEec
Q psy952 87 ----SHGLEGLAVDWVGRKLYWLDRHS----KQL---DVAE-LDGTN--RKTLKT--AIQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 87 ----~~~p~glavD~~~~~LY~td~~~----~~I---~~~~-ldg~~--~~~l~~--~~~~P~~Iavdp~~g~LYwtd~ 149 (573)
+..|.+|+||+.++...-||... +++ .-+. .++.. .+.++. ......|+++.|..+.||+.-.
T Consensus 495 ~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 495 NANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred ccccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEec
Confidence 34599999998665545566432 111 1111 22211 112222 2235679999999899998763
No 213
>KOG1036|consensus
Probab=87.84 E-value=30 Score=34.19 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=65.2
Q ss_pred CCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeE
Q psy952 16 KPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA 94 (573)
Q Consensus 16 ~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gla 94 (573)
...||++. ...++.++.+.....+.+.....+...+|.. ...+|..+ ..+.|.+++++++...++.+.. .....|.
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d-~~~~~~G~-~dg~vr~~Dln~~~~~~igth~-~~i~ci~ 101 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFAD-ESTIVTGG-LDGQVRRYDLNTGNEDQIGTHD-EGIRCIE 101 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccC-CceEEEec-cCceEEEEEecCCcceeeccCC-CceEEEE
Confidence 34566665 5677777776665544444444566777763 55666655 4568999999987776555443 5666676
Q ss_pred EeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 95 VDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 95 vD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
.-+ .....++-+..++|.+.+...
T Consensus 102 ~~~-~~~~vIsgsWD~~ik~wD~R~ 125 (323)
T KOG1036|consen 102 YSY-EVGCVISGSWDKTIKFWDPRN 125 (323)
T ss_pred eec-cCCeEEEcccCccEEEEeccc
Confidence 654 345667777788888877665
No 214
>KOG0296|consensus
Probab=87.63 E-value=34 Score=34.61 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=66.1
Q ss_pred CCCceeeCCCCCCEEEEEe-cccEEEEEcCCCce-eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE
Q psy952 5 DESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQY-SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV 82 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~-~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i 82 (573)
|-.+|...+....||.-++ ...|+......... ..+......+.=|-|++ ...|+.+-...+.|+.+.+.......+
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv 185 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKV 185 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeE
Confidence 5566666543333443332 34555555543322 23334555577788897 778888888899999999987555445
Q ss_pred EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952 83 IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 83 ~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~ 121 (573)
+.........=.|-+.+++|.-. ...+.|.+-++....
T Consensus 186 ~~Gh~~~ct~G~f~pdGKr~~tg-y~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 186 MSGHNSPCTCGEFIPDGKRILTG-YDDGTIIVWNPKTGQ 223 (399)
T ss_pred ecCCCCCcccccccCCCceEEEE-ecCceEEEEecCCCc
Confidence 44332222222233345555444 457788888876544
No 215
>KOG0308|consensus
Probab=87.35 E-value=49 Score=36.12 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=109.6
Q ss_pred CEEEEEecccEEEEEcCCCc---eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEc---------
Q psy952 17 PWLIFSNKYYVRNMSLDATQ---YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR--------- 84 (573)
Q Consensus 17 ~~l~~s~~~~I~~i~l~g~~---~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~--------- 84 (573)
.+|-.+....|+.+...... ...+...-..+..|+|-..++.|+.+-.-.++|+..+++....+.+..
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl 166 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSL 166 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccC
Confidence 55555666677777664332 223334445577888877888899888888899999987542211111
Q ss_pred --CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 85 --HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 85 --~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
.......+||... ++.++++-...+-|.+.+..... +..|...-.+.+.|.++.....+.-+. ..+.|..-++.
T Consensus 167 ~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s--SDgtIrlWdLg 243 (735)
T KOG0308|consen 167 GSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS--SDGTIRLWDLG 243 (735)
T ss_pred CCCCccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC--CCceEEeeecc
Confidence 1123445566553 34566666555666666654333 233445667789999988655554333 35666666664
Q ss_pred CCCcE-EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952 162 GSNFT-RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 162 G~~~~-~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
-..-. +++. .... ..+|..++.-..+|..+ ..+.|++.++....
T Consensus 244 qQrCl~T~~v-H~e~--VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 244 QQRCLATYIV-HKEG--VWALQSSPSFTHVYSGG-RDGNIYRTDLRNPA 288 (735)
T ss_pred ccceeeeEEe-ccCc--eEEEeeCCCcceEEecC-CCCcEEecccCCch
Confidence 33211 1211 2222 34666666667788776 45678888887643
No 216
>KOG0318|consensus
Probab=87.31 E-value=44 Score=35.53 Aligned_cols=217 Identities=12% Similarity=0.100 Sum_probs=102.0
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC---CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-C
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD---SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-T 120 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~---~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~ 120 (573)
+.+..|-|.+. +.+|.+-...++|+.++=..+...-.+... -+.+.+|+--+.+.++ .|-+...++.+-+... +
T Consensus 191 kFV~~VRysPD-G~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~-~T~SaDkt~KIWdVs~~s 268 (603)
T KOG0318|consen 191 KFVNCVRYSPD-GSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQF-LTVSADKTIKIWDVSTNS 268 (603)
T ss_pred cceeeEEECCC-CCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceE-EEecCCceEEEEEeeccc
Confidence 34778899975 888888888889988774433332223211 2345445444333333 3333333333333222 2
Q ss_pred ceeEec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC
Q psy952 121 NRKTLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLD 198 (573)
Q Consensus 121 ~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~ 198 (573)
..+++. +.+.+ .-+-+-+.++.|.-.. ..+.|--.+++-.....++ .........|++.+.+..||-++ ..+
T Consensus 269 lv~t~~~~~~v~d-qqvG~lWqkd~lItVS--l~G~in~ln~~d~~~~~~i--~GHnK~ITaLtv~~d~~~i~Sgs-yDG 342 (603)
T KOG0318|consen 269 LVSTWPMGSTVED-QQVGCLWQKDHLITVS--LSGTINYLNPSDPSVLKVI--SGHNKSITALTVSPDGKTIYSGS-YDG 342 (603)
T ss_pred eEEEeecCCchhc-eEEEEEEeCCeEEEEE--cCcEEEEecccCCChhhee--cccccceeEEEEcCCCCEEEeec-cCc
Confidence 222222 11100 0000111122222111 1222333332221222222 23344557899988777777655 456
Q ss_pred eEEEEeCC-CCcEEEEEeCCccceeEEEeeeC-CeEEEecCCCCceEEEeccCCc-ceEEEcccCCCceeeeeeec
Q psy952 199 YIASVDLD-GKHKHIVISGQKVPHVFALTLFE-DHIYWTDWNTKSINRADKFNGR-DYRVLRNTTHRPYDIHVYHP 271 (573)
Q Consensus 199 ~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~-~~lywtd~~~~~I~~~~~~~g~-~~~~l~~~~~~p~~i~v~~~ 271 (573)
.|..-+.. |..-++..... .....+|+..+ +.||-.-| ...|.++....+. ........-.+|.++++..+
T Consensus 343 ~I~~W~~~~g~~~~~~g~~h-~nqI~~~~~~~~~~~~t~g~-Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d 416 (603)
T KOG0318|consen 343 HINSWDSGSGTSDRLAGKGH-TNQIKGMAASESGELFTIGW-DDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSD 416 (603)
T ss_pred eEEEEecCCccccccccccc-cceEEEEeecCCCcEEEEec-CCeEEEEecccCcccccceeecCCCceeEEEcCC
Confidence 66655543 33333322322 45678899877 56655544 4567776532221 11112233446777776654
No 217
>KOG0276|consensus
Probab=87.22 E-value=49 Score=35.99 Aligned_cols=143 Identities=10% Similarity=0.054 Sum_probs=84.3
Q ss_pred CCCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952 4 WDESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER 81 (573)
Q Consensus 4 ~dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 81 (573)
.|...|......+|+++.+. ...+...+.+.......+..- ..+++-.|-. +..-+++......|+.++.+...+-.
T Consensus 13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia-RknWiv~GsDD~~IrVfnynt~ekV~ 91 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA-RKNWIVTGSDDMQIRVFNYNTGEKVK 91 (794)
T ss_pred CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee-ccceEEEecCCceEEEEecccceeeE
Confidence 45666776666788888775 334444444433221111111 1123334443 34445566677889999998765544
Q ss_pred EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-ec-cCCCCcceEEEeCCCceEEEEe
Q psy952 82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-LK-TAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l~-~~~~~P~~Iavdp~~g~LYwtd 148 (573)
.+...-..++.||+.+.. -.+.|.+....|..-+.++...-. .. ..-.....||+.|....-|.+-
T Consensus 92 ~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 92 TFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred EeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 444444688999999743 344455556677777877765433 22 3344478999999777777664
No 218
>KOG0272|consensus
Probab=87.05 E-value=40 Score=34.78 Aligned_cols=217 Identities=11% Similarity=-0.012 Sum_probs=116.5
Q ss_pred CCcceEEEEEEcCC-CEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCC-CCeEEEEEcCCC
Q psy952 43 DLLNVVAMDFHYKE-NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRH-SKQLDVAELDGT 120 (573)
Q Consensus 43 ~~~~~~~v~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~-~~~I~~~~ldg~ 120 (573)
....+.+++|+|.. +.-..+-...+.+..+.+++...-.-+...+.++..++|.+.++.|--+-.. +-+|+ ++...
T Consensus 216 H~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlW--D~~tk 293 (459)
T KOG0272|consen 216 HTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLW--DLETK 293 (459)
T ss_pred cccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhc--ccccc
Confidence 34568899999984 5445555566777777776643211123334788899999877666444321 11222 22221
Q ss_pred ceeEec--cCCCCcceEEEeCCCceEEEEecCC-cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952 121 NRKTLK--TAIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 121 ~~~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~-~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~ 197 (573)
. +.|. ..-....+||+.+ .|-|-.|-.-+ -++|+=.. .|..... + ...+....+++++ .+|+..-+-+..
T Consensus 294 ~-ElL~QEGHs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlR-tgr~im~-L--~gH~k~I~~V~fs-PNGy~lATgs~D 366 (459)
T KOG0272|consen 294 S-ELLLQEGHSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLR-TGRCIMF-L--AGHIKEILSVAFS-PNGYHLATGSSD 366 (459)
T ss_pred h-hhHhhcccccccceeEecC-CCceeeccCccchhheeecc-cCcEEEE-e--cccccceeeEeEC-CCceEEeecCCC
Confidence 1 2222 2344578999998 56776664211 22333211 1222222 2 2445555677777 466766676666
Q ss_pred CeEEEEeCCCCcE-EEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEEEcccCCCceeeeeee
Q psy952 198 DYIASVDLDGKHK-HIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYH 270 (573)
Q Consensus 198 ~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~~~~~p~~i~v~~ 270 (573)
+.+..-++.+... .++... ..-...|.+ ..++..+|-...+.+..-...++...++|+......+.+.|..
T Consensus 367 nt~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~ 440 (459)
T KOG0272|consen 367 NTCKVWDLRMRSELYTIPAH--SNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP 440 (459)
T ss_pred CcEEEeeecccccceecccc--cchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc
Confidence 6555545544332 122111 111223333 3567777777777766555566666677766666666655543
No 219
>KOG2110|consensus
Probab=86.76 E-value=38 Score=34.36 Aligned_cols=134 Identities=7% Similarity=0.046 Sum_probs=76.5
Q ss_pred ccEEEEEcCCCce-eecc---cCCcceEEEEEEcCCCEEEEE-ECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC
Q psy952 25 YYVRNMSLDATQY-SLVH---QDLLNVVAMDFHYKENRFYFA-DVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG 99 (573)
Q Consensus 25 ~~I~~i~l~g~~~-~~~~---~~~~~~~~v~~d~~~~~ly~~-d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~ 99 (573)
..|+.+++..-.+ ..+. ++.....++.+...+..|-+- ....+.|+.+++..-.....+...-.....|||+. .
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~-~ 184 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSP-D 184 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECC-C
Confidence 4466666654322 1111 122224445555444344333 34568888888776444333433346788899996 5
Q ss_pred CcEEEEeCCCCeEEE-EEc-CCCceeEeccC--CCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 100 RKLYWLDRHSKQLDV-AEL-DGTNRKTLKTA--IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 100 ~~LY~td~~~~~I~~-~~l-dg~~~~~l~~~--~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
|.|.-|-+..|+|.| +.. +|.....+..+ ..+...|+++|...+|-.+. ....|....++
T Consensus 185 G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS--~TeTVHiFKL~ 248 (391)
T KOG2110|consen 185 GTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS--NTETVHIFKLE 248 (391)
T ss_pred CCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec--CCCeEEEEEec
Confidence 667777777776654 443 45554445433 34578999999877665554 45566666654
No 220
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.53 E-value=15 Score=38.48 Aligned_cols=63 Identities=14% Similarity=0.254 Sum_probs=33.6
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---C--------------CCCCCCceEEEeccCCeEEEEe
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH---E--------------DDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---~--------------~~l~~P~glaiD~~~~~LYw~D 194 (573)
+..|.|....++||++.|. .+.|...++.-.....++.. - .-...|.-|.+..+++||||+.
T Consensus 314 itDI~iSlDDrfLYvs~W~-~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISLDDRFLYVSNWL-HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-TTS-EEEEEETT-TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEccCCCEEEEEccc-CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 6889999999999999997 56677776655443333310 0 0112477788888899999997
Q ss_pred C
Q psy952 195 A 195 (573)
Q Consensus 195 ~ 195 (573)
+
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 5
No 221
>KOG2106|consensus
Probab=86.21 E-value=49 Score=35.01 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=92.0
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCCc-
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSNF- 165 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~~- 165 (573)
+.|+-++=. ..-||+--+ ++.|..-++.+....+.......-.|+|++|. ..+|.|-.. ..-+|++ +-...
T Consensus 330 G~iRtv~e~--~~di~vGTt-rN~iL~Gt~~~~f~~~v~gh~delwgla~hps-~~q~~T~gqdk~v~lW~---~~k~~w 402 (626)
T KOG2106|consen 330 GPIRTVAEG--KGDILVGTT-RNFILQGTLENGFTLTVQGHGDELWGLATHPS-KNQLLTCGQDKHVRLWN---DHKLEW 402 (626)
T ss_pred CCeeEEecC--CCcEEEeec-cceEEEeeecCCceEEEEecccceeeEEcCCC-hhheeeccCcceEEEcc---CCceeE
Confidence 344444432 233776654 45677777776665555544457899999994 566777521 1223333 11110
Q ss_pred EEEEec--CCCCCCCc-eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeE--EEecCCCC
Q psy952 166 TRILTH--EDDIAWPN-ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHI--YWTDWNTK 240 (573)
Q Consensus 166 ~~l~~~--~~~l~~P~-glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~l--ywtd~~~~ 240 (573)
..++.. ...-..|. -||+-...++.++.|..+.....+..++....++.-.. ...-.+|.-.++.| |-.+....
T Consensus 403 t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~ 481 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGR 481 (626)
T ss_pred EEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCc
Confidence 011100 00112344 46666778899999988877777777755555544333 34455666667754 55677777
Q ss_pred ceEEEeccCCcceEEE
Q psy952 241 SINRADKFNGRDYRVL 256 (573)
Q Consensus 241 ~I~~~~~~~g~~~~~l 256 (573)
+..++.|..|+..+.|
T Consensus 482 ~y~r~~k~~gs~ithL 497 (626)
T KOG2106|consen 482 KYSRVGKCSGSPITHL 497 (626)
T ss_pred EEEEeeeecCceeEEe
Confidence 7888888888554443
No 222
>KOG0310|consensus
Probab=86.00 E-value=48 Score=34.75 Aligned_cols=209 Identities=8% Similarity=0.016 Sum_probs=116.4
Q ss_pred ccEEEEEcCCCc-eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952 25 YYVRNMSLDATQ-YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 25 ~~I~~i~l~g~~-~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
..|+.+++.... +..+......+.-+-|.+..+.++.+-.....+...++++.....-+...-..++..++-+.+++|.
T Consensus 90 G~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hiv 169 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIV 169 (487)
T ss_pred CcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEE
Confidence 456666643321 1122222233556778999999999887777777778877654323333446788899999999999
Q ss_pred EEeCCCCeEEEEEcCCCceeEe-ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE-EEecCCCCCCCceE
Q psy952 104 WLDRHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR-ILTHEDDIAWPNAL 181 (573)
Q Consensus 104 ~td~~~~~I~~~~ldg~~~~~l-~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~-l~~~~~~l~~P~gl 181 (573)
+|-+..|.|...++.....+++ +....-...+..-| .|.++.+-.| +.|.+.++-+..+.+ .. .........|
T Consensus 170 vtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lp-sgs~iasAgG--n~vkVWDl~~G~qll~~~--~~H~KtVTcL 244 (487)
T KOG0310|consen 170 VTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALP-SGSLIASAGG--NSVKVWDLTTGGQLLTSM--FNHNKTVTCL 244 (487)
T ss_pred EecCCCceEEEEEeccCCceeEEecCCCceeeEEEcC-CCCEEEEcCC--CeEEEEEecCCceehhhh--hcccceEEEE
Confidence 9999999998887765432221 22222223333334 5667776643 456666666333222 11 1223334567
Q ss_pred EEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcccee-EEEeee-CCeEEEecCCCCce
Q psy952 182 TLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHV-FALTLF-EDHIYWTDWNTKSI 242 (573)
Q Consensus 182 aiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p-~~ia~~-~~~lywtd~~~~~I 242 (573)
.+...+.+|+-+- -.+++-.+++ ++-+++..-. .+.| .+|++. ++...+.-..++.+
T Consensus 245 ~l~s~~~rLlS~s-LD~~VKVfd~--t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 245 RLASDSTRLLSGS-LDRHVKVFDT--TNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred EeecCCceEeecc-cccceEEEEc--cceEEEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 7765566666442 2344555542 3444444422 4444 466763 34444444444443
No 223
>KOG2055|consensus
Probab=85.66 E-value=49 Score=34.54 Aligned_cols=159 Identities=11% Similarity=0.077 Sum_probs=77.2
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CC-cceeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HG-LEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~-p~glavD~~~~~LY~td~~~~~I~~~~ldg~ 120 (573)
..+.+..|-|++....|.+++.. +.+..+.++|.....|.+-.+ .. +.-..|-+.+....++-..+.-++..+|...
T Consensus 212 s~~~I~sv~FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 212 SHGGITSVQFHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred CcCCceEEEecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 34568899999877777766654 456666677753332221111 11 2233344444423344334445566666544
Q ss_pred ceeEecc--CCC--CcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952 121 NRKTLKT--AIQ--DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 121 ~~~~l~~--~~~--~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
....+.. +.. .-+-.+|.+...+|-+ .|..+.|....+-... ...+- ... ...+++++.++ +..|+-.
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~--~G~~G~I~lLhakT~eli~s~K-ieG---~v~~~~fsSds-k~l~~~~ 363 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAI--AGNNGHIHLLHAKTKELITSFK-IEG---VVSDFTFSSDS-KELLASG 363 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEE--cccCceEEeehhhhhhhhheee-ecc---EEeeEEEecCC-cEEEEEc
Confidence 3333221 111 2344555554443322 2345555554432211 11110 011 12567777444 5555566
Q ss_pred CCCeEEEEeCCCCc
Q psy952 196 HLDYIASVDLDGKH 209 (573)
Q Consensus 196 ~~~~I~~~~~dG~~ 209 (573)
+++.|+..++.-..
T Consensus 364 ~~GeV~v~nl~~~~ 377 (514)
T KOG2055|consen 364 GTGEVYVWNLRQNS 377 (514)
T ss_pred CCceEEEEecCCcc
Confidence 67788888886543
No 224
>KOG0772|consensus
Probab=84.93 E-value=57 Score=34.64 Aligned_cols=193 Identities=12% Similarity=0.103 Sum_probs=106.9
Q ss_pred CCEEEEEecccEEEEEcCCCceeeccc------C-------CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC--cce
Q psy952 16 KPWLIFSNKYYVRNMSLDATQYSLVHQ------D-------LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST--EKE 80 (573)
Q Consensus 16 ~~~l~~s~~~~I~~i~l~g~~~~~~~~------~-------~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~--~~~ 80 (573)
..+|+++....++.++-+|....-... . ...+....|++.+...|++-...+.++.++++.. ..+
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 346666666667778888865422111 1 1224456799999999999988888877777653 233
Q ss_pred EEEcCC--C--CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec----c--CCCCcceEEEeCCCceEEEEecC
Q psy952 81 RVIRHD--S--HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK----T--AIQDPRGITLHPGIGYVYFSSWN 150 (573)
Q Consensus 81 ~i~~~~--~--~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~----~--~~~~P~~Iavdp~~g~LYwtd~~ 150 (573)
+|.... . -.|..-+++. .++++-+--..|.|+.-++.+..++..+ . .......|++.+...+|. +- +
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SR-g 383 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SR-G 383 (641)
T ss_pred EEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hc-c
Confidence 332211 1 2355566765 3455555556788888777554444322 1 233678899988654442 32 2
Q ss_pred CcCeEEEEeccCCCcEEEEe--------c------------CCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCCCc
Q psy952 151 LQAYIGKIGMDGSNFTRILT--------H------------EDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDGKH 209 (573)
Q Consensus 151 ~~~~I~r~~ldG~~~~~l~~--------~------------~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~ 209 (573)
....+..-+|.-.+..+.+. . .++-..|++.+ .+.|||-|.. ...++.+++++..
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~----~g~L~f~d~~t~d~v~ki~i~~aS 459 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT----AGTLFFFDRMTLDTVYKIDISTAS 459 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCC----CceEEEEeccceeeEEEecCCCce
Confidence 22333333333222222110 0 12333455443 4577777764 4578888888665
Q ss_pred EEEEEe
Q psy952 210 KHIVIS 215 (573)
Q Consensus 210 ~~~l~~ 215 (573)
+..+.-
T Consensus 460 vv~~~W 465 (641)
T KOG0772|consen 460 VVRCLW 465 (641)
T ss_pred EEEEee
Confidence 544443
No 225
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=84.80 E-value=34 Score=31.86 Aligned_cols=118 Identities=8% Similarity=0.031 Sum_probs=71.1
Q ss_pred ccEEEEEcCCCceeec-ccCCcceEEEEEEcCCCEEEEEEC-CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 25 YYVRNMSLDATQYSLV-HQDLLNVVAMDFHYKENRFYFADV-AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~-~~~~~~~~~v~~d~~~~~ly~~d~-~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
..|++++..+.....+ +...+.+..++|.|.++++.++.. ....|..+++++.....+ +-.....|.+.+.++.|
T Consensus 39 ~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~---~~~~~n~i~wsP~G~~l 115 (194)
T PF08662_consen 39 FELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSF---GTQPRNTISWSPDGRFL 115 (194)
T ss_pred EEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEee---cCCCceEEEECCCCCEE
Confidence 3566676655443333 223334889999999988877643 334677777764333222 22456678888888888
Q ss_pred EEEeCC--CCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEE
Q psy952 103 YWLDRH--SKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFS 147 (573)
Q Consensus 103 Y~td~~--~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwt 147 (573)
..+..+ .+.|.+.+..... .+. ..-.....++-+|..++|..+
T Consensus 116 ~~~g~~n~~G~l~~wd~~~~~--~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 116 VLAGFGNLNGDLEFWDVRKKK--KISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EEEEccCCCcEEEEEECCCCE--EeeccccCcEEEEEEcCCCCEEEEE
Confidence 877643 4678888877322 222 122235677778855555443
No 226
>KOG0319|consensus
Probab=84.51 E-value=71 Score=35.40 Aligned_cols=184 Identities=11% Similarity=0.012 Sum_probs=101.8
Q ss_pred CEEEEEecccEEEEEcCCCceeec---ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcCCCCCcce
Q psy952 17 PWLIFSNKYYVRNMSLDATQYSLV---HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRHDSHGLEG 92 (573)
Q Consensus 17 ~~l~~s~~~~I~~i~l~g~~~~~~---~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~~~~p~g 92 (573)
.+|+-+-.+.|..+++......++ ......+.++++.+.++.||.+- .++.|..+.+..+... ......-.-...
T Consensus 32 ~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa~He~Pvi~ 110 (775)
T KOG0319|consen 32 QHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKAIHEAPVIT 110 (775)
T ss_pred CEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEee-ccceEEEEEcccchHhHhHhhccCCCeEE
Confidence 344444466788888865543222 12344578899998888887765 3446666777654221 111112234567
Q ss_pred eEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCC-cceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEe
Q psy952 93 LAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQD-PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILT 170 (573)
Q Consensus 93 lavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~-P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~ 170 (573)
|++|+.+ .|.-+-...+++.|-++.+.+...-+.+... ...|.++|.-.+...........+...++.-... ..+.
T Consensus 111 ma~~~~g-~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~- 188 (775)
T KOG0319|consen 111 MAFDPTG-TLLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTM- 188 (775)
T ss_pred EEEcCCC-ceEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHH-
Confidence 9999866 6666666778999999998887766655333 5667777643321111112345566555542211 1111
Q ss_pred cCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 171 ~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
........+|++-.+...|+ +-.....|..-++
T Consensus 189 -~~H~S~vtsL~~~~d~~~~l-s~~RDkvi~vwd~ 221 (775)
T KOG0319|consen 189 -ILHKSAVTSLAFSEDSLELL-SVGRDKVIIVWDL 221 (775)
T ss_pred -HhhhhheeeeeeccCCceEE-EeccCcEEEEeeh
Confidence 22334456777775543333 3333444555555
No 227
>KOG2055|consensus
Probab=83.75 E-value=60 Score=33.95 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=41.3
Q ss_pred CCCCCCceeeCCCCCCEEEEEe-cccEEEEEcCCCceeeccc-C-Ccc-eEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952 2 PGWDESTCKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQ-D-LLN-VVAMDFHYKENRFYFADVAAKTIYRSRVGST 77 (573)
Q Consensus 2 ~g~dg~~C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~-~-~~~-~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~ 77 (573)
|-.-|-++..--...|.||++. .+.++.+.++|..-..+-. . .+. +.-..|.+.+....++.....-+|.++|...
T Consensus 211 ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 211 PSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 3345666766555677888876 3566666777754322210 0 111 3344566555534444445556666776543
Q ss_pred c
Q psy952 78 E 78 (573)
Q Consensus 78 ~ 78 (573)
.
T Consensus 291 k 291 (514)
T KOG2055|consen 291 K 291 (514)
T ss_pred c
Confidence 3
No 228
>KOG1517|consensus
Probab=82.64 E-value=52 Score=38.20 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=107.9
Q ss_pred CCCCCCCceeeCC-CCCCEEEEEec-ccEEEEEcCCCce--eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952 1 MPGWDESTCKRRD-SIKPWLIFSNK-YYVRNMSLDATQY--SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76 (573)
Q Consensus 1 ~~g~dg~~C~~~~-~~~~~l~~s~~-~~I~~i~l~g~~~--~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g 76 (573)
+||.+|..|...= ...++|+.+.. ..|+..+++.... .++...-.-+.+|.-|..++.++.+....|+|..++..-
T Consensus 1161 ~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~ 1240 (1387)
T KOG1517|consen 1161 LPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRM 1240 (1387)
T ss_pred CccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeeccc
Confidence 4677777766422 34567777663 5566666765433 233444455888888988899999999999998888654
Q ss_pred CcceEEE---cCC--CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccC------CCCcceEEEeCCCceEE
Q psy952 77 TEKERVI---RHD--SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTA------IQDPRGITLHPGIGYVY 145 (573)
Q Consensus 77 ~~~~~i~---~~~--~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~------~~~P~~Iavdp~~g~LY 145 (573)
..+...+ ... ...+.++.+-..+-.=.++-+..|.|+..++.+......++. ...-.+|.|++. .-|+
T Consensus 1241 a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~h-apii 1319 (1387)
T KOG1517|consen 1241 APPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEH-APII 1319 (1387)
T ss_pred CCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccC-CCee
Confidence 3322111 111 112455555432222245666788999999988644443321 113677889884 4455
Q ss_pred EEecCCcCeEEEEeccCCCcEEEEec----CCCCCCCceEEEec
Q psy952 146 FSSWNLQAYIGKIGMDGSNFTRILTH----EDDIAWPNALTLDY 185 (573)
Q Consensus 146 wtd~~~~~~I~r~~ldG~~~~~l~~~----~~~l~~P~glaiD~ 185 (573)
-+-. ...|...++.|....++... ...+..+..|++.+
T Consensus 1320 AsGs--~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1320 ASGS--AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred eecC--cceEEEEecChhhhcccccCcccccCcCCCcceeeecc
Confidence 4442 36788888888776655421 12233345566653
No 229
>KOG1274|consensus
Probab=82.32 E-value=97 Score=35.31 Aligned_cols=197 Identities=11% Similarity=0.112 Sum_probs=107.6
Q ss_pred eeeCCCCCCEEEEEec-ccEEEEEcCC--CceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC
Q psy952 9 CKRRDSIKPWLIFSNK-YYVRNMSLDA--TQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH 85 (573)
Q Consensus 9 C~~~~~~~~~l~~s~~-~~I~~i~l~g--~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~ 85 (573)
|.+.++ .||+.... ..|+.+.-.. ..+..+-.....+.+++.+. ..|.+-...+.|.++.........|+..
T Consensus 20 ~~d~~g--efi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 20 CYDPDG--EFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred EEcCCC--CEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCCCccceeee
Confidence 555544 38877765 4455554322 22222221333455666542 2677777888999999987766655543
Q ss_pred CCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC
Q psy952 86 DSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 164 (573)
Q Consensus 86 ~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~ 164 (573)
---..+.++|+-.+.++-. -+..-.|-+.+++ ++..+++...-....+|.++|...+|-++.. .+.+...++.-..
T Consensus 95 ftlp~r~~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--dG~v~iw~~~~~~ 171 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--DGKVQIWDLQDGI 171 (933)
T ss_pred eeccceEEEEecCCcEEEe-ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec--CceEEEEEcccch
Confidence 2235677888854444444 3344456666764 5555555555555678888987666666652 4555555554222
Q ss_pred -cEEEEec---CC-CCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEE
Q psy952 165 -FTRILTH---ED-DIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI 214 (573)
Q Consensus 165 -~~~l~~~---~~-~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~ 214 (573)
...+... .+ .+..+ .-++..|+++.+-+.- ..+.|..++.+|-.....+
T Consensus 172 ~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-~d~~Vkvy~r~~we~~f~L 226 (933)
T KOG1274|consen 172 LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-VDNTVKVYSRKGWELQFKL 226 (933)
T ss_pred hhhhcccCCccccccccceeeeeeecCCCCeEEeec-cCCeEEEEccCCceeheee
Confidence 1111100 01 11222 3466777767665543 3456666666665444333
No 230
>KOG0282|consensus
Probab=82.29 E-value=29 Score=36.34 Aligned_cols=130 Identities=12% Similarity=0.064 Sum_probs=76.8
Q ss_pred CEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952 17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD 96 (573)
Q Consensus 17 ~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD 96 (573)
.||-.+=...|+-.+++.++...-...-..|.-|-|.+.+.++|++....++|..+++..+....-....++.+..|.|=
T Consensus 272 ~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~ 351 (503)
T KOG0282|consen 272 SFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFV 351 (503)
T ss_pred eeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEc
Confidence 34444445667777777655444444445578899999999999999999999999987654211122235566666664
Q ss_pred ecCCcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEEEe
Q psy952 97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYwtd 148 (573)
. .++=|++-+....+.+-...-.....++ .....-..|+++| ++..+.+.
T Consensus 352 ~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P-~~~~~~aQ 403 (503)
T KOG0282|consen 352 D-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHP-NGKWFAAQ 403 (503)
T ss_pred c-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCC-CCCeehhh
Confidence 3 4455555555555555444332222222 2333345688888 45554443
No 231
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=81.66 E-value=66 Score=36.86 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=49.6
Q ss_pred ceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC-CCeEEEEeCCCCcEE
Q psy952 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH-LDYIASVDLDGKHKH 211 (573)
Q Consensus 133 ~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~~~dG~~~~ 211 (573)
..+++|+..+.+||-..+..+.+ .|..+... .++..-.=+|||...+++-|.-.. .+-++ |+|....-
T Consensus 378 ~~~s~D~~~glvy~ptGn~~pd~-----~g~~r~~~----~n~y~~slvALD~~TGk~~W~~Q~~~hD~W--D~D~~~~p 446 (764)
T TIGR03074 378 SVASYDEKLGLVYLPMGNQTPDQ-----WGGDRTPA----DEKYSSSLVALDATTGKERWVFQTVHHDLW--DMDVPAQP 446 (764)
T ss_pred CceEEcCCCCeEEEeCCCccccc-----cCCccccC----cccccceEEEEeCCCCceEEEecccCCccc--cccccCCc
Confidence 46789999999999653222111 13332211 122233457889888888886443 22233 34433333
Q ss_pred EEEeC---CccceeEEEee-eCCeEEEecCCCCceEE
Q psy952 212 IVISG---QKVPHVFALTL-FEDHIYWTDWNTKSINR 244 (573)
Q Consensus 212 ~l~~~---~~~~~p~~ia~-~~~~lywtd~~~~~I~~ 244 (573)
+|+.- .....|.-+.. -.+++|+-|..+++...
T Consensus 447 ~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~ 483 (764)
T TIGR03074 447 SLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV 483 (764)
T ss_pred eEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence 33321 00112221221 24567777777666543
No 232
>KOG0292|consensus
Probab=81.47 E-value=1e+02 Score=35.12 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=81.7
Q ss_pred ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
.....++.++-|++ .+.|.++....+.|..++++.. ..+++-. ...+-.-||..+ .-+||-+-...| +.|+.++-
T Consensus 247 rgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tfrr-endRFW~laahP-~lNLfAAgHDsG-m~VFkleR 322 (1202)
T KOG0292|consen 247 RGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTFRR-ENDRFWILAAHP-ELNLFAAGHDSG-MIVFKLER 322 (1202)
T ss_pred hcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeeeec-cCCeEEEEEecC-CcceeeeecCCc-eEEEEEcc
Confidence 34566788999997 6678889999999999999763 3333322 234566677765 457777765443 55555543
Q ss_pred CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec---CCCCCCCceEEEeccCCeEEEEe
Q psy952 120 TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH---EDDIAWPNALTLDYFTERLYWAD 194 (573)
Q Consensus 120 ~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~---~~~l~~P~glaiD~~~~~LYw~D 194 (573)
. +-..+|+- +.||+.. ...|...++....-..+... .+.-..|..|.+.|..+-+.++.
T Consensus 323 E-----------rpa~~v~~--n~LfYvk---d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics 384 (1202)
T KOG0292|consen 323 E-----------RPAYAVNG--NGLFYVK---DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICS 384 (1202)
T ss_pred c-----------CceEEEcC--CEEEEEc---cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEe
Confidence 2 33455653 4455554 34677777765333333310 01123467899998888877773
No 233
>KOG0269|consensus
Probab=81.39 E-value=68 Score=35.79 Aligned_cols=161 Identities=9% Similarity=0.036 Sum_probs=95.8
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC-----CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD-----SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~-----~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~ 121 (573)
..+|........|-++....-.|+.++.++......+..+ +.....+.-.-...+|..|-+.+|.|.+-+|.-..
T Consensus 42 ~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~ 121 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI 121 (839)
T ss_pred cceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCccc
Confidence 3455555556666666666556666665553322222111 11222222222334556666778899999998765
Q ss_pred eeEec----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952 122 RKTLK----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 122 ~~~l~----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~ 197 (573)
+..++ +.-....-+.+++..-+|.++- ++.+.|.-.+|.-....... ...-.....+.+.+..+..|.+-...
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG-SQDg~vK~~DlR~~~S~~t~--~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISG-SQDGTVKCWDLRSKKSKSTF--RSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEec-CCCceEEEEeeecccccccc--cccchhhhceeeccCCCceEEEecCC
Confidence 55543 3444577888888888888776 34566666666544333322 23444456777777778888887777
Q ss_pred CeEEEEeCCCCcE
Q psy952 198 DYIASVDLDGKHK 210 (573)
Q Consensus 198 ~~I~~~~~dG~~~ 210 (573)
|.+...|+.-..+
T Consensus 199 G~lqlWDlRqp~r 211 (839)
T KOG0269|consen 199 GYLQLWDLRQPDR 211 (839)
T ss_pred ceEEEeeccCchh
Confidence 8888877765544
No 234
>PHA02713 hypothetical protein; Provisional
Probab=81.09 E-value=94 Score=34.30 Aligned_cols=161 Identities=10% Similarity=0.010 Sum_probs=80.2
Q ss_pred eEEEEEcCCCcceEEEcCCCCCc---ceeEEeecCCcEEEEeCC------CCeEEEEEcCCCceeEeccCCCCcc-eEEE
Q psy952 68 TIYRSRVGSTEKERVIRHDSHGL---EGLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRKTLKTAIQDPR-GITL 137 (573)
Q Consensus 68 ~I~~~~~~g~~~~~i~~~~~~~p---~glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~~l~~~~~~P~-~Iav 137 (573)
.+.++++.......+. .+..+ .++++ .++.||+.-.. ...++++++....-..+ ..+..|+ +.++
T Consensus 273 ~v~~yd~~~~~W~~l~--~mp~~r~~~~~a~--l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~-~~m~~~R~~~~~ 347 (557)
T PHA02713 273 CILVYNINTMEYSVIS--TIPNHIINYASAI--VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVEL-PPMIKNRCRFSL 347 (557)
T ss_pred CEEEEeCCCCeEEECC--CCCccccceEEEE--ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeC-CCCcchhhceeE
Confidence 4566666544433332 22222 23333 57899998542 24577888765543322 2333333 1222
Q ss_pred eCCCceEEEEecCC----cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCCeEEEEeCC----------------
Q psy952 138 HPGIGYVYFSSWNL----QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTERLYWADAH---------------- 196 (573)
Q Consensus 138 dp~~g~LYwtd~~~----~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~~LYw~D~~---------------- 196 (573)
-..+|.||+.-... ...+++.++....=.. ...+..|. +.++-..+++||+.-..
T Consensus 348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~----~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~ 423 (557)
T PHA02713 348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM----LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSID 423 (557)
T ss_pred EEECCEEEEECCcCCCCCCceEEEEECCCCeEEE----CCCCCcccccccEEEECCEEEEEeCCCccccccccccccccc
Confidence 22368999986321 2356777665322111 12333332 12222247999997432
Q ss_pred -------CCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952 197 -------LDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW 237 (573)
Q Consensus 197 -------~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~ 237 (573)
.+.++++++....=+.+..-.......++++.++.||+.-.
T Consensus 424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG 471 (557)
T PHA02713 424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCD 471 (557)
T ss_pred ccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeC
Confidence 23566776654332322221101223478889999999843
No 235
>KOG1445|consensus
Probab=80.97 E-value=76 Score=34.66 Aligned_cols=136 Identities=10% Similarity=0.072 Sum_probs=79.7
Q ss_pred cccEEEEEcC--CCceeeccc---CCcceEEEEEEcCCC-EEEEE-ECCCCeEEEEEcCCC-----cceEEEcCCCCCcc
Q psy952 24 KYYVRNMSLD--ATQYSLVHQ---DLLNVVAMDFHYKEN-RFYFA-DVAAKTIYRSRVGST-----EKERVIRHDSHGLE 91 (573)
Q Consensus 24 ~~~I~~i~l~--g~~~~~~~~---~~~~~~~v~~d~~~~-~ly~~-d~~~~~I~~~~~~g~-----~~~~i~~~~~~~p~ 91 (573)
...|-.+.|. |.-..-++. +...+..+.||+-+. +|-++ |-+.-+|+|+..+|. ..+.++.....++.
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~ 681 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT 681 (1012)
T ss_pred CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE
Confidence 4566666664 332222222 344577888887654 44443 222335677776663 34556666667888
Q ss_pred eeEEeecCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 92 GLAVDWVGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 92 glavD~~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
.|-+.++.-.|..+-+..-+|..-+|.. ...-.|........+||-.|..+.|- |- ...++|.+....
T Consensus 682 slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~A-tV-cKDg~~rVy~Pr 750 (1012)
T KOG1445|consen 682 SLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIA-TV-CKDGTLRVYEPR 750 (1012)
T ss_pred EEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCccee-ee-ecCceEEEeCCC
Confidence 8888887777666666666788777753 33334555556678888888544432 21 234555555443
No 236
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.71 E-value=1.1e+02 Score=35.02 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=21.8
Q ss_pred EeeeCCeEEEecCCCCceEEEeccCCcce
Q psy952 225 LTLFEDHIYWTDWNTKSINRADKFNGRDY 253 (573)
Q Consensus 225 ia~~~~~lywtd~~~~~I~~~~~~~g~~~ 253 (573)
|+..++.+|++-...+.++.+++.+|+.+
T Consensus 687 l~TagglvF~~gt~d~~l~A~D~~tGk~l 715 (764)
T TIGR03074 687 LATAGGLVFIGATQDNYLRAYDLSTGKEL 715 (764)
T ss_pred EEEcCCEEEEEeCCCCEEEEEECCCCcee
Confidence 55667888885445678999999898764
No 237
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=80.65 E-value=21 Score=37.32 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=34.6
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-----cCC---------------CCcceEEEeCCCceEEEEe
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-----TAI---------------QDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-----~~~---------------~~P~~Iavdp~~g~LYwtd 148 (573)
-|..|.|.-..+.||++....|.|..++........++ .+. ..|.-|.++....+||||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 34666666668999999999999999998654433322 111 1378888999899999997
Q ss_pred c
Q psy952 149 W 149 (573)
Q Consensus 149 ~ 149 (573)
+
T Consensus 393 S 393 (461)
T PF05694_consen 393 S 393 (461)
T ss_dssp -
T ss_pred e
Confidence 4
No 238
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=80.04 E-value=17 Score=39.01 Aligned_cols=22 Identities=18% Similarity=0.090 Sum_probs=19.5
Q ss_pred CCCcceeEEeecCCcEEEEeCC
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRH 108 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~ 108 (573)
+.+|++|++.+..+.+|++...
T Consensus 416 mdRpE~i~~~p~~g~Vy~~lTN 437 (616)
T COG3211 416 MDRPEWIAVNPGTGEVYFTLTN 437 (616)
T ss_pred ccCccceeecCCcceEEEEeCC
Confidence 6799999999999999998753
No 239
>KOG0310|consensus
Probab=79.70 E-value=86 Score=33.00 Aligned_cols=112 Identities=11% Similarity=0.039 Sum_probs=74.9
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE-e
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT-L 125 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~-l 125 (573)
+.+++|- .+|+|+-+--..|.|..+++.....-..+......+.-+-|-+..+.++.+-.....+...++++..... |
T Consensus 71 v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l 149 (487)
T KOG0310|consen 71 VYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL 149 (487)
T ss_pred eeEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe
Confidence 6678886 4788888888888999988654211111122223445556666778888887777777777888877532 3
Q ss_pred ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952 126 KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 126 ~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l 160 (573)
...-...|.+++.|.++.|++|-. -.+.|.-.+.
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGs-YDg~vrl~Dt 183 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGS-YDGKVRLWDT 183 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecC-CCceEEEEEe
Confidence 345666999999999999999973 3445544443
No 240
>KOG0273|consensus
Probab=78.71 E-value=91 Score=32.76 Aligned_cols=153 Identities=10% Similarity=0.044 Sum_probs=87.2
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC-CCCeEEEEEcCCCcee
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR-HSKQLDVAELDGTNRK 123 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~-~~~~I~~~~ldg~~~~ 123 (573)
..+.+|+|. .++.+..+-...+.+..++.+|....++... ..|. +++-|...-=|.... ..+++...+.-....+
T Consensus 236 kdVT~L~Wn-~~G~~LatG~~~G~~riw~~~G~l~~tl~~H--kgPI-~slKWnk~G~yilS~~vD~ttilwd~~~g~~~ 311 (524)
T KOG0273|consen 236 KDVTSLDWN-NDGTLLATGSEDGEARIWNKDGNLISTLGQH--KGPI-FSLKWNKKGTYILSGGVDGTTILWDAHTGTVK 311 (524)
T ss_pred CCcceEEec-CCCCeEEEeecCcEEEEEecCchhhhhhhcc--CCce-EEEEEcCCCCEEEeccCCccEEEEeccCceEE
Confidence 447899998 4677888888888899999998765544322 2332 566676655555442 3455665554322222
Q ss_pred EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCC--CCeEE
Q psy952 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAH--LDYIA 201 (573)
Q Consensus 124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~--~~~I~ 201 (573)
...+ +...-++-|++....=|.+- +....|.+..+++.....-+ ...-...++|-.++.+ .|.-+-+. +-+|+
T Consensus 312 q~f~-~~s~~~lDVdW~~~~~F~ts-~td~~i~V~kv~~~~P~~t~--~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiW 386 (524)
T KOG0273|consen 312 QQFE-FHSAPALDVDWQSNDEFATS-STDGCIHVCKVGEDRPVKTF--IGHHGEVNALKWNPTG-SLLASCSDDGTLKIW 386 (524)
T ss_pred Eeee-eccCCccceEEecCceEeec-CCCceEEEEEecCCCcceee--ecccCceEEEEECCCC-ceEEEecCCCeeEee
Confidence 2221 11222666777666666665 34566777777765543333 1223344788888644 44444333 33566
Q ss_pred EEeCC
Q psy952 202 SVDLD 206 (573)
Q Consensus 202 ~~~~d 206 (573)
.+.-+
T Consensus 387 s~~~~ 391 (524)
T KOG0273|consen 387 SMGQS 391 (524)
T ss_pred ecCCC
Confidence 65433
No 241
>PRK10115 protease 2; Provisional
Probab=77.89 E-value=1.3e+02 Score=34.13 Aligned_cols=180 Identities=11% Similarity=0.137 Sum_probs=88.8
Q ss_pred ccEEEEEcCCCc-eeecccCCcceEEEEEEcCCCEEEEEEC-----CCCeEEEEEcCCC--cceEEEcCCCCCcceeEE-
Q psy952 25 YYVRNMSLDATQ-YSLVHQDLLNVVAMDFHYKENRFYFADV-----AAKTIYRSRVGST--EKERVIRHDSHGLEGLAV- 95 (573)
Q Consensus 25 ~~I~~i~l~g~~-~~~~~~~~~~~~~v~~d~~~~~ly~~d~-----~~~~I~~~~~~g~--~~~~i~~~~~~~p~glav- 95 (573)
..|+++++.+.. +...+.... .+++|...++.||++-. ....|++.++... ..+.|+... ..+..+.+
T Consensus 153 ~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~-~~~~~~~~~ 229 (686)
T PRK10115 153 YGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEK-DDTFYVSLH 229 (686)
T ss_pred EEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeC-CCCEEEEEE
Confidence 356677775443 112222222 45888877888888743 2258999998765 333344322 22222222
Q ss_pred -eecCCcEEEEe--CCCCeEEEEEc---CCCceeEeccCCCCcceEEEeCCCceEEEEe-cC-CcCeEEEEeccCC-CcE
Q psy952 96 -DWVGRKLYWLD--RHSKQLDVAEL---DGTNRKTLKTAIQDPRGITLHPGIGYVYFSS-WN-LQAYIGKIGMDGS-NFT 166 (573)
Q Consensus 96 -D~~~~~LY~td--~~~~~I~~~~l---dg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd-~~-~~~~I~r~~ldG~-~~~ 166 (573)
...++.|++.- .....+..++. ++..+..+......-..+. +. .+.+|+.. ++ ...+|.++.++.. .-+
T Consensus 230 ~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~ly~~tn~~~~~~~l~~~~~~~~~~~~ 307 (686)
T PRK10115 230 KTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY-QHRFYLRSNRHGKNFGLYRTRVRDEQQWE 307 (686)
T ss_pred EcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC-CCEEEEEEcCCCCCceEEEecCCCcccCe
Confidence 11233444322 22345665553 3332222222211122222 33 35566554 33 3567888888742 334
Q ss_pred EEEecCC-CCCCCceEEEeccCCeEEEEeCC--CCeEEEEeCCCCcEEEE
Q psy952 167 RILTHED-DIAWPNALTLDYFTERLYWADAH--LDYIASVDLDGKHKHIV 213 (573)
Q Consensus 167 ~l~~~~~-~l~~P~glaiD~~~~~LYw~D~~--~~~I~~~~~dG~~~~~l 213 (573)
.++ .. .-....++++. .+.|+++-.. ..+|..+++++.....|
T Consensus 308 ~l~--~~~~~~~i~~~~~~--~~~l~~~~~~~g~~~l~~~~~~~~~~~~l 353 (686)
T PRK10115 308 ELI--PPRENIMLEGFTLF--TDWLVVEERQRGLTSLRQINRKTREVIGI 353 (686)
T ss_pred EEE--CCCCCCEEEEEEEE--CCEEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence 555 23 11233566665 6777776543 44677788776544443
No 242
>KOG0288|consensus
Probab=77.87 E-value=68 Score=33.09 Aligned_cols=109 Identities=13% Similarity=0.109 Sum_probs=70.4
Q ss_pred CEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-----CCCC
Q psy952 57 NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-----AIQD 131 (573)
Q Consensus 57 ~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-----~~~~ 131 (573)
...++++-..++|.-++..+......+..+ +.+..|.+-..+..|.-. ...+.+-++++.+...+...+ ...+
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asD 389 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASD 389 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecC-cceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccc
Confidence 556666666777877776665443333322 477777777655556555 567789999998887776653 1223
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEE
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 169 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~ 169 (573)
-..+.+.|.. =|++-.+..++|+.-+..+...+.++
T Consensus 390 wtrvvfSpd~--~YvaAGS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 390 WTRVVFSPDG--SYVAAGSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred cceeEECCCC--ceeeeccCCCcEEEEEccCceEEEEe
Confidence 6677788844 34555455677887777777766655
No 243
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=77.65 E-value=1.1e+02 Score=33.05 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=75.8
Q ss_pred cCCcEEEEeC----CCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCC
Q psy952 98 VGRKLYWLDR----HSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHED 173 (573)
Q Consensus 98 ~~~~LY~td~----~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~ 173 (573)
....||+... ....+..+|.+|..|-.+......-..+-+-+ +|.|++.. ...|..+++.|......-- ..
T Consensus 112 ~~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~-nG~ll~~~---~~~~~e~D~~G~v~~~~~l-~~ 186 (477)
T PF05935_consen 112 MEDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLP-NGNLLIGS---GNRLYEIDLLGKVIWEYDL-PG 186 (477)
T ss_dssp -TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SSEEE-T-TS-EEEEE---BTEEEEE-TT--EEEEEE---T
T ss_pred cCCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccceeeEcC-CCCEEEec---CCceEEEcCCCCEEEeeec-CC
Confidence 4556777665 34567888888887655442111111144444 67777766 3688889998875433220 11
Q ss_pred CC-CCCceEEEeccCCeEEEEeC------------CCCeEEEEeCCCCcEEEEEeCC-----------------------
Q psy952 174 DI-AWPNALTLDYFTERLYWADA------------HLDYIASVDLDGKHKHIVISGQ----------------------- 217 (573)
Q Consensus 174 ~l-~~P~glaiD~~~~~LYw~D~------------~~~~I~~~~~dG~~~~~l~~~~----------------------- 217 (573)
.. ..=..+...+.++.|..+.. ....|..++.+|.-+..+-...
T Consensus 187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 10 11133444433344443331 1235666776665444432110
Q ss_pred --ccceeEEEeeeC--CeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952 218 --KVPHVFALTLFE--DHIYWTDWNTKSINRADKFNGRDYRVLRN 258 (573)
Q Consensus 218 --~~~~p~~ia~~~--~~lywtd~~~~~I~~~~~~~g~~~~~l~~ 258 (573)
...|..+|.+.. +.|+++-.....|..++..+++..-+|..
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 024678888864 88999999999999999778776656654
No 244
>KOG3914|consensus
Probab=77.37 E-value=80 Score=32.37 Aligned_cols=152 Identities=7% Similarity=-0.001 Sum_probs=87.5
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc--eEEE-cCCCCCcceeEEeecCCcEEEEeCCCC--eEEEEEcCCCce
Q psy952 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEK--ERVI-RHDSHGLEGLAVDWVGRKLYWLDRHSK--QLDVAELDGTNR 122 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~i~-~~~~~~p~glavD~~~~~LY~td~~~~--~I~~~~ldg~~~ 122 (573)
..+.+......|++++...+ +..+...++.. +.+. ...-.+|..+.+......+-++|.... .+.+...+-...
T Consensus 66 ~~~~~s~~~~llAv~~~~K~-~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQ-RAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred cccccCCCceEEEEEeCCCc-eEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 34445555555666655543 33333333321 1111 112257888888877778888885432 233333332223
Q ss_pred eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE-EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR-ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 123 ~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~-l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~ 201 (573)
+.++..+....+|||.|...+|..+| +..+|....+.+..... +. ...-.....|++- .+++.|+-.+.++|+
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaD--RDEkIRvs~ypa~f~Iesfc--lGH~eFVS~isl~--~~~~LlS~sGD~tlr 218 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFC--LGHKEFVSTISLT--DNYLLLSGSGDKTLR 218 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEec--CCceEEEEecCcccchhhhc--cccHhheeeeeec--cCceeeecCCCCcEE
Confidence 34556777789999999998998888 35577777776654211 11 1111234566664 677788888888877
Q ss_pred EEeCC
Q psy952 202 SVDLD 206 (573)
Q Consensus 202 ~~~~d 206 (573)
.=++.
T Consensus 219 ~Wd~~ 223 (390)
T KOG3914|consen 219 LWDIT 223 (390)
T ss_pred EEecc
Confidence 76664
No 245
>PHA02790 Kelch-like protein; Provisional
Probab=77.25 E-value=1.1e+02 Score=32.97 Aligned_cols=173 Identities=8% Similarity=-0.044 Sum_probs=87.0
Q ss_pred CCCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcc-eeEEeecCCcEEEEeCC--CCeEEEEEcCCCceeEec
Q psy952 55 KENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLE-GLAVDWVGRKLYWLDRH--SKQLDVAELDGTNRKTLK 126 (573)
Q Consensus 55 ~~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~~~~~LY~td~~--~~~I~~~~ldg~~~~~l~ 126 (573)
.++.||++.... ..++++++.......+. .+..|+ ..+.-..+++||+.-.. ...+++.++....-. .+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~ 346 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NM 346 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEE-EC
Confidence 357888875421 35677776654333222 222232 11222357999998642 246777776433222 22
Q ss_pred cCCCCcc-eEEEeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCCeEEEEeCCCCeEEE
Q psy952 127 TAIQDPR-GITLHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 127 ~~~~~P~-~Iavdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
..+..|+ +.++-..+|.||+.-... ...+++.+..... -.. ...+..|. +.++-..+++||+.- +.+++
T Consensus 347 ~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~--~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQ--WQF--GPSTYYPHYKSCALVFGRRLFLVG---RNAEF 419 (480)
T ss_pred CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCE--EEe--CCCCCCccccceEEEECCEEEEEC---CceEE
Confidence 3443343 222223368999985321 2345565554221 111 12333342 111112478999975 34677
Q ss_pred EeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecC
Q psy952 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDW 237 (573)
Q Consensus 203 ~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~ 237 (573)
+++....=+.+..-..-..-.++++.+++||+.-.
T Consensus 420 ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG 454 (480)
T PHA02790 420 YCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGG 454 (480)
T ss_pred ecCCCCcEeEcCCCCCCccccEEEEECCEEEEECC
Confidence 77754322222221101223578889999999854
No 246
>KOG2139|consensus
Probab=77.21 E-value=89 Score=31.81 Aligned_cols=183 Identities=13% Similarity=0.040 Sum_probs=89.7
Q ss_pred EecccEEEEEcCCCceeecc-cCCcceEEEEEEcC----------CCEEEEEECCCCeEEEE-EcCCCcceEEE-cCCCC
Q psy952 22 SNKYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYK----------ENRFYFADVAAKTIYRS-RVGSTEKERVI-RHDSH 88 (573)
Q Consensus 22 s~~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~----------~~~ly~~d~~~~~I~~~-~~~g~~~~~i~-~~~~~ 88 (573)
++...|+.++-.....+.+. ....++..|+|-+. .+-.+|++......-|. .+-++....++ ..+-.
T Consensus 117 ~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~ 196 (445)
T KOG2139|consen 117 TNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHN 196 (445)
T ss_pred ccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCCc
Confidence 34455555554443333332 22344555555444 45566666543222221 12222222222 22222
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEE-EEeccCCCcE
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIG-KIGMDGSNFT 166 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~-r~~ldG~~~~ 166 (573)
-+..|+-...+..|--+..+...|.+-+.+......|. .++....-|-..|...+||-+......+++ -..+--..+-
T Consensus 197 pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw 276 (445)
T KOG2139|consen 197 PVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERW 276 (445)
T ss_pred eeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecce
Confidence 33444444333333333344556777677655554454 344444455667777777766532222232 1111112222
Q ss_pred EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
++. .+ .-.+-..++.+.+|.++-.+..+|++..+++..
T Consensus 277 ~lg---sg--rvqtacWspcGsfLLf~~sgsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 277 ILG---SG--RVQTACWSPCGSFLLFACSGSPRLYSLTFDGED 314 (445)
T ss_pred ecc---CC--ceeeeeecCCCCEEEEEEcCCceEEEEeecCCC
Confidence 222 11 234556788899999999999999999988754
No 247
>KOG2321|consensus
Probab=76.85 E-value=48 Score=35.67 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=42.5
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
..|.|+..+--||++-... .|||++|+.+-. ..+- ......+.+.+...++ |..+-...+.|+..++..
T Consensus 137 RDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~-~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDpR~ 206 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFE-TDSGELNVVSINEEHG-LLACGTEDGVVEFWDPRD 206 (703)
T ss_pred ccccccCCCccEEEeecCc-ceEEEEccccccccccc-cccccceeeeecCccc-eEEecccCceEEEecchh
Confidence 5788888888899886554 699999975432 2222 2224555566665544 444444456666666543
No 248
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=76.53 E-value=78 Score=30.83 Aligned_cols=130 Identities=12% Similarity=0.076 Sum_probs=72.0
Q ss_pred EEEEEe--cccEEEEEcCCCcee--ecccCC------------cceEEEEEEcCCCEEEEE---ECCCCeEEEEEcCCC-
Q psy952 18 WLIFSN--KYYVRNMSLDATQYS--LVHQDL------------LNVVAMDFHYKENRFYFA---DVAAKTIYRSRVGST- 77 (573)
Q Consensus 18 ~l~~s~--~~~I~~i~l~g~~~~--~~~~~~------------~~~~~v~~d~~~~~ly~~---d~~~~~I~~~~~~g~- 77 (573)
.|++-. ...|.|++|....+. ..+++. ..-+.+|+| ++-||+. ....+.|....+|-.
T Consensus 80 slYY~~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvD--E~GLWvIYat~~~~g~ivvskld~~t 157 (250)
T PF02191_consen 80 SLYYNKYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVD--ENGLWVIYATEDNNGNIVVSKLDPET 157 (250)
T ss_pred cEEEEecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEc--CCCEEEEEecCCCCCcEEEEeeCccc
Confidence 444433 468889999876543 222221 123566667 4445544 334456777666653
Q ss_pred -cceEEEcCCCCCc-ceeEEeecCCcEEEEeCCC---CeE-EEEEcCCCceeEe-c---cCCCCcceEEEeCCCceEEEE
Q psy952 78 -EKERVIRHDSHGL-EGLAVDWVGRKLYWLDRHS---KQL-DVAELDGTNRKTL-K---TAIQDPRGITLHPGIGYVYFS 147 (573)
Q Consensus 78 -~~~~i~~~~~~~p-~glavD~~~~~LY~td~~~---~~I-~~~~ldg~~~~~l-~---~~~~~P~~Iavdp~~g~LYwt 147 (573)
..+....+.+.++ .+=||= +-|.||.+++.. .+| .++|+.......+ + ........|..+|..+.||.-
T Consensus 158 L~v~~tw~T~~~k~~~~naFm-vCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w 236 (250)
T PF02191_consen 158 LSVEQTWNTSYPKRSAGNAFM-VCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW 236 (250)
T ss_pred CceEEEEEeccCchhhcceee-EeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence 3333333333222 222332 468999999654 344 4566653322221 1 244457889999999999988
Q ss_pred ecC
Q psy952 148 SWN 150 (573)
Q Consensus 148 d~~ 150 (573)
|.+
T Consensus 237 d~G 239 (250)
T PF02191_consen 237 DNG 239 (250)
T ss_pred ECC
Confidence 843
No 249
>KOG0284|consensus
Probab=75.32 E-value=76 Score=32.72 Aligned_cols=157 Identities=10% Similarity=0.024 Sum_probs=85.9
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCcee
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRK 123 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~ 123 (573)
..+..|+|.+ +...|.+-...++|...+.--...+.++...-..|..++-.+..+.|+... ..+.|..-|.. |+-.-
T Consensus 181 eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs-kDnlVKlWDprSg~cl~ 258 (464)
T KOG0284|consen 181 EAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS-KDNLVKLWDPRSGSCLA 258 (464)
T ss_pred hhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc-CCceeEeecCCCcchhh
Confidence 4588999998 888899988899888888654444444443335677666665544444333 33344444443 33323
Q ss_pred EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~ 203 (573)
+|...-....++.+.+.. ....|- +....+...++. .-.+++.. ...-..-..++..|....||.+-...+.|...
T Consensus 259 tlh~HKntVl~~~f~~n~-N~Llt~-skD~~~kv~DiR-~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~ 334 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNG-NWLLTG-SKDQSCKVFDIR-TMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHW 334 (464)
T ss_pred hhhhccceEEEEEEcCCC-CeeEEc-cCCceEEEEehh-HhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEE
Confidence 333344446778888744 333343 334455555544 11111110 01111234566667777777776666666655
Q ss_pred eCCC
Q psy952 204 DLDG 207 (573)
Q Consensus 204 ~~dG 207 (573)
.+..
T Consensus 335 ~v~~ 338 (464)
T KOG0284|consen 335 VVGL 338 (464)
T ss_pred eccc
Confidence 5553
No 250
>KOG0278|consensus
Probab=74.76 E-value=84 Score=30.33 Aligned_cols=144 Identities=13% Similarity=0.068 Sum_probs=80.3
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-CcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK 123 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~ 123 (573)
+.+.-+.|-..++.|.= ....+.|+..+... +....|.. . ..+..|.+...++.|-.++.. .|...+.+. ..
T Consensus 144 g~Ir~v~wc~eD~~iLS-Sadd~tVRLWD~rTgt~v~sL~~-~-s~VtSlEvs~dG~ilTia~gs--sV~Fwdaks--f~ 216 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILS-SADDKTVRLWDHRTGTEVQSLEF-N-SPVTSLEVSQDGRILTIAYGS--SVKFWDAKS--FG 216 (334)
T ss_pred CcceeEEEeccCceEEe-eccCCceEEEEeccCcEEEEEec-C-CCCcceeeccCCCEEEEecCc--eeEEecccc--cc
Confidence 34666667655555444 36666777777543 33343332 2 467888888766666556532 343333322 22
Q ss_pred Eec--cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeE
Q psy952 124 TLK--TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 124 ~l~--~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I 200 (573)
.|. .-..+..+-.++|.+ .+|++- +....+++.+.+........ ..+-..| ..+.+. .++.||-+-+..+.|
T Consensus 217 ~lKs~k~P~nV~SASL~P~k-~~fVaG-ged~~~~kfDy~TgeEi~~~--nkgh~gpVhcVrFS-PdGE~yAsGSEDGTi 291 (334)
T KOG0278|consen 217 LLKSYKMPCNVESASLHPKK-EFFVAG-GEDFKVYKFDYNTGEEIGSY--NKGHFGPVHCVRFS-PDGELYASGSEDGTI 291 (334)
T ss_pred ceeeccCccccccccccCCC-ceEEec-CcceEEEEEeccCCceeeec--ccCCCCceEEEEEC-CCCceeeccCCCceE
Confidence 221 222334566688855 788886 44667888887754433332 1333333 466666 467888776655544
No 251
>KOG0306|consensus
Probab=74.28 E-value=1.5e+02 Score=33.13 Aligned_cols=151 Identities=13% Similarity=0.145 Sum_probs=87.3
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCcee
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRK 123 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~ 123 (573)
.+..+.+.|.. ++..+..-+..+..+.+|.-..- .+....+ -+..|.|.+ ..+|.+|-+....|-+--|+ |.-.+
T Consensus 510 dvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlKFflsLYGHkL-PV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHK 586 (888)
T KOG0306|consen 510 DVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-PVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHK 586 (888)
T ss_pred cEEEEEEcCCC-cEEEEEeccCeEEEEEecceeeeeeeccccc-ceeEEeccC-CcCeEEeccCCCceEEeccccchhhh
Confidence 46778888644 44444455567777777754332 1222222 233455544 35788888777766665555 45555
Q ss_pred EeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEE
Q psy952 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 124 ~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~ 203 (573)
.+...-.....+.+-| +.++|||- +..+.|.+- ||.....|............||+-+ +|...++-++...|...
T Consensus 587 S~fAHdDSvm~V~F~P-~~~~FFt~-gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 587 SFFAHDDSVMSVQFLP-KTHLFFTC-GKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhhcccCceeEEEEcc-cceeEEEe-cCcceEEee--chhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEee
Confidence 5665555667888888 77899998 345555544 5555444432234445556788875 44444455555555544
Q ss_pred e
Q psy952 204 D 204 (573)
Q Consensus 204 ~ 204 (573)
.
T Consensus 662 E 662 (888)
T KOG0306|consen 662 E 662 (888)
T ss_pred e
Confidence 3
No 252
>PRK10115 protease 2; Provisional
Probab=73.95 E-value=1.6e+02 Score=33.34 Aligned_cols=193 Identities=10% Similarity=0.099 Sum_probs=98.6
Q ss_pred eEEEEEEcCCCEEEEEECCC----CeEEEEEcCCCcc-eEEEcCCCCCcceeEEeecCCcEEEEeC-----CCCeEEEEE
Q psy952 47 VVAMDFHYKENRFYFADVAA----KTIYRSRVGSTEK-ERVIRHDSHGLEGLAVDWVGRKLYWLDR-----HSKQLDVAE 116 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~----~~I~~~~~~g~~~-~~i~~~~~~~p~glavD~~~~~LY~td~-----~~~~I~~~~ 116 (573)
+.++.+.+.++.|.++--.. ..|+.+++.++.. ...+ .+.. .+++....++.||++-. ....|++.+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i-~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL-DNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc-cCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 55677877777776663332 3688888865431 1111 1111 23444444566777632 225788888
Q ss_pred cCCC--ceeEeccCCCCcc--eEEEeCCCceEEEEecCC-cCeEEEEec---cCCCcEEEEecCCCCCCCceEEEeccCC
Q psy952 117 LDGT--NRKTLKTAIQDPR--GITLHPGIGYVYFSSWNL-QAYIGKIGM---DGSNFTRILTHEDDIAWPNALTLDYFTE 188 (573)
Q Consensus 117 ldg~--~~~~l~~~~~~P~--~Iavdp~~g~LYwtd~~~-~~~I~r~~l---dG~~~~~l~~~~~~l~~P~glaiD~~~~ 188 (573)
+... ..+.|......+. ++......++|++.-.+. .+.++.... ++..+..+. .... .-..+...++
T Consensus 206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~ 280 (686)
T PRK10115 206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLP---RRKD--HEYSLDHYQH 280 (686)
T ss_pred CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEE---CCCC--CEEEEEeCCC
Confidence 8765 3344444322222 223333455665443322 344555442 333222222 1111 1223334567
Q ss_pred eEEEEeC---CCCeEEEEeCCCC-cEEEEEeCCccceeEEEeeeCCeEEEecCC--CCceEEEec
Q psy952 189 RLYWADA---HLDYIASVDLDGK-HKHIVISGQKVPHVFALTLFEDHIYWTDWN--TKSINRADK 247 (573)
Q Consensus 189 ~LYw~D~---~~~~I~~~~~dG~-~~~~l~~~~~~~~p~~ia~~~~~lywtd~~--~~~I~~~~~ 247 (573)
.||+... .+.+|.++++... .-++|+....-....++++++++|+++-.. ..+|+.++.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcC
Confidence 8887653 2347888887642 234444432123567888888888877443 345666664
No 253
>KOG1407|consensus
Probab=73.80 E-value=91 Score=30.31 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=97.5
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEe
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL 125 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l 125 (573)
.+.-+.+++....+|.+-.....|.+.+...+.....+.... .-.-++.-+.++.+-+.+. .+.|..++.....+..-
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~-eni~i~wsp~g~~~~~~~k-dD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKG-ENINITWSPDGEYIAVGNK-DDRITFIDARTYKIVNE 143 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccC-cceEEEEcCCCCEEEEecC-cccEEEEEecccceeeh
Confidence 466788999999999998888889888876554432222211 1111222222233322222 22343333322221111
Q ss_pred ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE-EEEe
Q psy952 126 KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI-ASVD 204 (573)
Q Consensus 126 ~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I-~~~~ 204 (573)
.+-.....-|+-. ..+.|||...| .+.|+.+..--.....-+ ...-..-..|.+||++++ +|-.....+ ..-+
T Consensus 144 ~~~~~e~ne~~w~-~~nd~Fflt~G-lG~v~ILsypsLkpv~si--~AH~snCicI~f~p~Gry--fA~GsADAlvSLWD 217 (313)
T KOG1407|consen 144 EQFKFEVNEISWN-NSNDLFFLTNG-LGCVEILSYPSLKPVQSI--KAHPSNCICIEFDPDGRY--FATGSADALVSLWD 217 (313)
T ss_pred hcccceeeeeeec-CCCCEEEEecC-CceEEEEecccccccccc--ccCCcceEEEEECCCCce--EeeccccceeeccC
Confidence 1122224556666 35566666644 456665554422222111 111112235777765554 333333322 2223
Q ss_pred CCCCcEEEEEeCCccceeE-EEee-eCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952 205 LDGKHKHIVISGQKVPHVF-ALTL-FEDHIYWTDWNTKSINRADKFNGRDYRVLR 257 (573)
Q Consensus 205 ~dG~~~~~l~~~~~~~~p~-~ia~-~~~~lywtd~~~~~I~~~~~~~g~~~~~l~ 257 (573)
++-.--...+. ++..|. .|.+ +++++.-+-.....|-.+.-.+|.....|.
T Consensus 218 ~~ELiC~R~is--RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 218 VDELICERCIS--RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred hhHhhhheeec--cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 32211111111 144553 4555 566666666777778888878887665554
No 254
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=73.71 E-value=37 Score=38.90 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=51.8
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcceEE-EcCCCCCcceeEEeecCCcEEE-EeC----CCCeEEEEEcCCCceeE--e-c
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKERV-IRHDSHGLEGLAVDWVGRKLYW-LDR----HSKQLDVAELDGTNRKT--L-K 126 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i-~~~~~~~p~glavD~~~~~LY~-td~----~~~~I~~~~ldg~~~~~--l-~ 126 (573)
.+-+|+.+. .++|..++.+|...+++ +... ..+..-++.+.++.|-+ +.. +.-.|++.+|+.+.... | +
T Consensus 319 tkiAfv~~~-~~~L~~~D~dG~n~~~ve~~~~-~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~v 396 (912)
T TIGR02171 319 AKLAFRNDV-TGNLAYIDYTKGASRAVEIEDT-ISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPV 396 (912)
T ss_pred eeEEEEEcC-CCeEEEEecCCCCceEEEecCC-CceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeec
Confidence 455666663 34788888888777655 4332 12222245556666655 432 23468888887544322 2 2
Q ss_pred cCCCCcceEEEe-CCCceEEEEecCC
Q psy952 127 TAIQDPRGITLH-PGIGYVYFSSWNL 151 (573)
Q Consensus 127 ~~~~~P~~Iavd-p~~g~LYwtd~~~ 151 (573)
....-||==++. -.+-.+|+++.+.
T Consensus 397 e~aaiprwrv~e~gdt~ivyv~~a~n 422 (912)
T TIGR02171 397 ENAAIPRWRVLENGDTVIVYVSDASN 422 (912)
T ss_pred ccccccceEecCCCCeEEEEEcCCCC
Confidence 343445544443 2334689998764
No 255
>KOG1219|consensus
Probab=73.29 E-value=5.7 Score=49.11 Aligned_cols=86 Identities=29% Similarity=0.741 Sum_probs=54.0
Q ss_pred cC-CCeeeec---ceeeCCcCCCCCCCCCCCCCC--CccccCCCCCccCC--ccccCCCCccccCCCCceecCCCccccc
Q psy952 316 CN-NGKCIDY---HLVCNKESDCEDDSDEPLHCN--VDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKACTD 387 (573)
Q Consensus 316 C~-~g~Ci~~---~~~cd~~~~c~d~sde~~~c~--~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~c~~~~~c~~~ 387 (573)
|. .|.|++. .|+|-+-.-+.-. .|. ...|.+ .+|.. +|....+.+.|.|+.+|. |.+|-.+
T Consensus 3872 CqhgG~C~~~~~ggy~CkCpsqysG~-----~CEi~~epC~s---nPC~~GgtCip~~n~f~CnC~~gyT---G~~Ce~~ 3940 (4289)
T KOG1219|consen 3872 CQHGGTCISQPKGGYKCKCPSQYSGN-----HCEIDLEPCAS---NPCLTGGTCIPFYNGFLCNCPNGYT---GKRCEAR 3940 (4289)
T ss_pred ccCCCEecCCCCCceEEeCcccccCc-----ccccccccccC---CCCCCCCEEEecCCCeeEeCCCCcc---Cceeecc
Confidence 54 4679875 6888554433322 343 345644 56666 788888899999998886 5556655
Q ss_pred -ccccCCCCCCCCCCCCCCCCCCCCCCCceecC
Q psy952 388 -IDECIEQPGVCSQYPAMCHNRPCDKDTEFACR 419 (573)
Q Consensus 388 -~~~C~~~~~~~~~~~~~C~~~~C~~~~~f~C~ 419 (573)
+.+|.+..-+- ...|.|. ++ .|.|+
T Consensus 3941 Gi~eCs~n~C~~---gg~C~n~---~g-sf~Cn 3966 (4289)
T KOG1219|consen 3941 GISECSKNVCGT---GGQCINI---PG-SFHCN 3966 (4289)
T ss_pred cccccccccccC---Cceeecc---CC-ceEec
Confidence 77787655321 2355554 45 78887
No 256
>KOG0301|consensus
Probab=72.99 E-value=1.6e+02 Score=32.66 Aligned_cols=180 Identities=11% Similarity=0.065 Sum_probs=102.2
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC--eEEEEEcCCCceeEecc
Q psy952 50 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK--QLDVAELDGTNRKTLKT 127 (573)
Q Consensus 50 v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~--~I~~~~ldg~~~~~l~~ 127 (573)
+.|...++...++-.....|.+..+.+..+-.++...-..+-+|+++... . .++-+... +|++. |....++..
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~---~~l~~~l~g 138 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRI---GELVYSLQG 138 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecc---hhhhcccCC
Confidence 66665344333333445566677777665544444334566666665322 1 23333322 22221 111112222
Q ss_pred CCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 128 AIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 128 ~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
.-....+++.-|.+ .|+|-.+ .+..++.-+|+..+++. ......+||++=+..+ |.+-.+.+.|..-+++|
T Consensus 139 H~asVWAv~~l~e~--~~vTgsa--DKtIklWk~~~~l~tf~---gHtD~VRgL~vl~~~~--flScsNDg~Ir~w~~~g 209 (745)
T KOG0301|consen 139 HTASVWAVASLPEN--TYVTGSA--DKTIKLWKGGTLLKTFS---GHTDCVRGLAVLDDSH--FLSCSNDGSIRLWDLDG 209 (745)
T ss_pred cchheeeeeecCCC--cEEeccC--cceeeeccCCchhhhhc---cchhheeeeEEecCCC--eEeecCCceEEEEeccC
Confidence 33335577777754 8888743 34445555677666665 3344568998864333 45556788899999988
Q ss_pred CcEEEEEeCCccceeEEEe-eeCCeEEEecCCCCceEEE
Q psy952 208 KHKHIVISGQKVPHVFALT-LFEDHIYWTDWNTKSINRA 245 (573)
Q Consensus 208 ~~~~~l~~~~~~~~p~~ia-~~~~~lywtd~~~~~I~~~ 245 (573)
......... ..+.++|+ ..++.++++-...+++..-
T Consensus 210 e~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW 246 (745)
T KOG0301|consen 210 EVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIW 246 (745)
T ss_pred ceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEe
Confidence 766554433 46788888 4678888888777776543
No 257
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=72.96 E-value=3.6 Score=26.63 Aligned_cols=23 Identities=48% Similarity=1.193 Sum_probs=18.7
Q ss_pred CccCC--ccccCCCCccccCCCCce
Q psy952 355 NQCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 355 ~~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
..|.+ .|.+..+.+.|.|+.+|.
T Consensus 9 ~~C~~~~~C~~~~g~~~C~C~~g~~ 33 (39)
T smart00179 9 NPCQNGGTCVNTVGSYRCECPPGYT 33 (39)
T ss_pred CCcCCCCEeECCCCCeEeECCCCCc
Confidence 45665 788889999999998886
No 258
>KOG0650|consensus
Probab=72.52 E-value=18 Score=38.93 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=73.8
Q ss_pred CcceEEEEEEcCCCEEEEEEC--CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-C
Q psy952 44 LLNVVAMDFHYKENRFYFADV--AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-T 120 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~ 120 (573)
...+..|.|+-.+.+|-.+-. .+.+|+...|.-...+.-+...-+.|..+.|.+..-.||++-. +.|..++|-. .
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq--~~vRiYdL~kqe 598 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ--RSVRIYDLSKQE 598 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec--cceEEEehhHHH
Confidence 344567777766665554433 3345555555332111111112257788899998889999875 4566677653 3
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
.++.|+++..+...|+|+|...+|+.... ..++-.++||-+
T Consensus 599 lvKkL~tg~kwiS~msihp~GDnli~gs~--d~k~~WfDldls 639 (733)
T KOG0650|consen 599 LVKKLLTGSKWISSMSIHPNGDNLILGSY--DKKMCWFDLDLS 639 (733)
T ss_pred HHHHHhcCCeeeeeeeecCCCCeEEEecC--CCeeEEEEcccC
Confidence 44557788888999999998888887763 457777777744
No 259
>KOG1408|consensus
Probab=72.41 E-value=1.6e+02 Score=32.83 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=55.8
Q ss_pred ceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCc--cceeEEEeeeCCeEEEecCC-CCceEEEeccCCcceEE
Q psy952 179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQK--VPHVFALTLFEDHIYWTDWN-TKSINRADKFNGRDYRV 255 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~--~~~p~~ia~~~~~lywtd~~-~~~I~~~~~~~g~~~~~ 255 (573)
..+++|+..+.+. +--....|..++.........+.+.+ -..+.-+.++...||++-.- .+.|-.++..+|+-+..
T Consensus 600 YDm~Vdp~~k~v~-t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~ 678 (1080)
T KOG1408|consen 600 YDMAVDPTSKLVV-TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQ 678 (1080)
T ss_pred EEeeeCCCcceEE-EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhh
Confidence 5788886555444 43445668888876555555554321 34567777777778877554 45577777777776555
Q ss_pred EcccCCCceeeeeeec
Q psy952 256 LRNTTHRPYDIHVYHP 271 (573)
Q Consensus 256 l~~~~~~p~~i~v~~~ 271 (573)
+........|++....
T Consensus 679 m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 679 MTGHSEAVTGVKFLND 694 (1080)
T ss_pred hcCcchheeeeeeccc
Confidence 5444444556655443
No 260
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=71.44 E-value=24 Score=40.40 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=61.3
Q ss_pred cCCcEEEEeCCCCeEEEEEcCCCceeEe-ccCCCCcceEEEeCCCceEEE-EecC---CcCeEEEEeccCC--CcEEEEe
Q psy952 98 VGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYF-SSWN---LQAYIGKIGMDGS--NFTRILT 170 (573)
Q Consensus 98 ~~~~LY~td~~~~~I~~~~ldg~~~~~l-~~~~~~P~~Iavdp~~g~LYw-td~~---~~~~I~r~~ldG~--~~~~l~~ 170 (573)
.++.+|+.+ .+++|.++|.+|...+++ +..-.....-++.|....|=+ +... ..+.|++.+|+.+ ....|-
T Consensus 318 ~tkiAfv~~-~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~- 395 (912)
T TIGR02171 318 KAKLAFRND-VTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP- 395 (912)
T ss_pred eeeEEEEEc-CCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee-
Confidence 356678887 345899999999888877 543222333357777777766 4332 3677999988744 333333
Q ss_pred cCCCCCCCceEEEec-cCCeEEEEeCCCCe
Q psy952 171 HEDDIAWPNALTLDY-FTERLYWADAHLDY 199 (573)
Q Consensus 171 ~~~~l~~P~glaiD~-~~~~LYw~D~~~~~ 199 (573)
.+.-..|+--.+.. +.-.+|++|+++++
T Consensus 396 -ve~aaiprwrv~e~gdt~ivyv~~a~nn~ 424 (912)
T TIGR02171 396 -VENAAIPRWRVLENGDTVIVYVSDASNNK 424 (912)
T ss_pred -cccccccceEecCCCCeEEEEEcCCCCCc
Confidence 34555565444431 23357999998764
No 261
>KOG1272|consensus
Probab=71.34 E-value=16 Score=38.02 Aligned_cols=35 Identities=11% Similarity=0.107 Sum_probs=20.0
Q ss_pred cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 127 ~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
....-.++||||+...|| .|. |....+..-++...
T Consensus 291 cH~g~V~siAv~~~G~YM-aTt-G~Dr~~kIWDlR~~ 325 (545)
T KOG1272|consen 291 CHRGPVSSIAVDRGGRYM-ATT-GLDRKVKIWDLRNF 325 (545)
T ss_pred hcCCCcceEEECCCCcEE-eec-ccccceeEeeeccc
Confidence 344557899999955444 333 33444555555433
No 262
>KOG0640|consensus
Probab=70.98 E-value=1.2e+02 Score=30.31 Aligned_cols=150 Identities=13% Similarity=0.141 Sum_probs=89.5
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCC----Cc-----------ceEEEcC---CCCCcceeEEeecCCcEEEEeCC
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGS----TE-----------KERVIRH---DSHGLEGLAVDWVGRKLYWLDRH 108 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g----~~-----------~~~i~~~---~~~~p~glavD~~~~~LY~td~~ 108 (573)
..+-+|. .++.|+-+....-+|..++..- +. ...++.+ .+..+..|+|.+ ...|..+-+.
T Consensus 115 cR~aafs-~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP-re~ILiS~sr 192 (430)
T KOG0640|consen 115 CRAAAFS-PDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP-RETILISGSR 192 (430)
T ss_pred eeeeeeC-CCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc-hhheEEeccC
Confidence 3456666 4778888777766777666531 01 1122221 234567788886 4567777777
Q ss_pred CCeEEEEEcCCCceeE---eccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC---CCceEE
Q psy952 109 SKQLDVAELDGTNRKT---LKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA---WPNALT 182 (573)
Q Consensus 109 ~~~I~~~~ldg~~~~~---l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~---~P~gla 182 (573)
.+.|..++......+. +++.....+.|.++|...+|.+.. .++.+...+.+.. +-++.....-. ..+.+-
T Consensus 193 D~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--dHp~~rlYdv~T~--QcfvsanPd~qht~ai~~V~ 268 (430)
T KOG0640|consen 193 DNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--DHPTLRLYDVNTY--QCFVSANPDDQHTGAITQVR 268 (430)
T ss_pred CCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--CCCceeEEeccce--eEeeecCcccccccceeEEE
Confidence 8888888887655443 235666789999999888887765 2444444444322 23331011111 112333
Q ss_pred EeccCCeEEEEeCCCCeEEEE
Q psy952 183 LDYFTERLYWADAHLDYIASV 203 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~~I~~~ 203 (573)
+. ..++||++-++.+.|...
T Consensus 269 Ys-~t~~lYvTaSkDG~Iklw 288 (430)
T KOG0640|consen 269 YS-STGSLYVTASKDGAIKLW 288 (430)
T ss_pred ec-CCccEEEEeccCCcEEee
Confidence 33 578999999998887654
No 263
>KOG3567|consensus
Probab=70.84 E-value=1.3 Score=45.80 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=62.0
Q ss_pred EEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEe
Q psy952 59 FYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLH 138 (573)
Q Consensus 59 ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavd 138 (573)
+|++...-.+|.++.+.=-..+.+-...++...|+|+|...+ |.+-..+.+.+.+..++..+.-.-+..+..|+
T Consensus 373 ~~vskl~p~ri~k~~~~~~~~e~l~gv~lgqv~gva~d~~~~-l~vfhr~g~vwd~~sfd~~f~~~~~~pi~~~~----- 446 (501)
T KOG3567|consen 373 MYVSKLPPSRILKIRLLVLDQEALDGVYLGQVSGVALDPKNN-LVVFHRGGHVWDGNSFDSKFVYQQIGPIEEDT----- 446 (501)
T ss_pred HHHhcCCcchhhhHHHhhcchhhcCcchhheeeeeccCCccc-eEEEccCCceEeechhhhhhhhhcccccccce-----
Confidence 566665555555444321111212222245777888886543 43443333344444444433211112222333
Q ss_pred CCCceEEEEecCCcCeEEEEeccCCCcE-EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 139 PGIGYVYFSSWNLQAYIGKIGMDGSNFT-RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 139 p~~g~LYwtd~~~~~~I~r~~ldG~~~~-~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
|.|+.+....+. ..- ...+..|.||.+| .++..|++|...+.+......+
T Consensus 447 ----------------ilvi~~~n~~~l~~~g--~~~fylphgl~~d-kdgf~~~tdvash~v~k~k~~~ 497 (501)
T KOG3567|consen 447 ----------------ILVIDPNNAAVLQSSG--KNLFYLPHGLSID-KDGFYWVTDVASHQVFKLKPNN 497 (501)
T ss_pred ----------------EEEEcCcchhhhhhcc--CCceecCCcceec-CCCcEEeecccchhhhhccccc
Confidence 444433311111 111 3456779999999 7888888888777666555444
No 264
>KOG2096|consensus
Probab=70.48 E-value=1.2e+02 Score=30.33 Aligned_cols=162 Identities=10% Similarity=0.108 Sum_probs=92.8
Q ss_pred CCceeeCCC-CCCEEEEEecccEEEEEcCCCc---eeecc--cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEc----C
Q psy952 6 ESTCKRRDS-IKPWLIFSNKYYVRNMSLDATQ---YSLVH--QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV----G 75 (573)
Q Consensus 6 g~~C~~~~~-~~~~l~~s~~~~I~~i~l~g~~---~~~~~--~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~----~ 75 (573)
..||.+-.. .+.+.-.+..+.|+..++..-. .+.+. ..+..|..|+|.+.-..+.++=.....|+++.+ +
T Consensus 88 ~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d 167 (420)
T KOG2096|consen 88 EVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD 167 (420)
T ss_pred ceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc
Confidence 345555442 2334444556778888876421 11111 234578899998877766555556667877765 3
Q ss_pred CCcceEEEc-CC-----CCCcceeEEeecCCcEEEEe-CCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe
Q psy952 76 STEKERVIR-HD-----SHGLEGLAVDWVGRKLYWLD-RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 76 g~~~~~i~~-~~-----~~~p~glavD~~~~~LY~td-~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd 148 (573)
|+.....+. .. ...+.-+.|--.++-.|+.. +....|..-++.|.....+-++..+-..-||.|..++|-.+-
T Consensus 168 G~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 168 GSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred CCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEec
Confidence 433222211 11 12233344444566667655 445678888899888777777777778889999877776665
Q ss_pred cCCcCeEE--EEeccCCCcEE
Q psy952 149 WNLQAYIG--KIGMDGSNFTR 167 (573)
Q Consensus 149 ~~~~~~I~--r~~ldG~~~~~ 167 (573)
....-+++ ...-||+..++
T Consensus 248 FTpDVkVwE~~f~kdG~fqev 268 (420)
T KOG2096|consen 248 FTPDVKVWEPIFTKDGTFQEV 268 (420)
T ss_pred CCCCceEEEEEeccCcchhhh
Confidence 32222333 23456765443
No 265
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=70.04 E-value=1.7e+02 Score=31.71 Aligned_cols=33 Identities=24% Similarity=0.195 Sum_probs=21.4
Q ss_pred eEEEeccCCeEEEEeCCC-----------------CeEEEEeCCCCcEEE
Q psy952 180 ALTLDYFTERLYWADAHL-----------------DYIASVDLDGKHKHI 212 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~-----------------~~I~~~~~dG~~~~~ 212 (573)
..++|+..++||+..... +.|..+++....++-
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W 270 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW 270 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence 367787788888875321 367777776554433
No 266
>KOG2111|consensus
Probab=69.43 E-value=1.3e+02 Score=30.15 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=82.0
Q ss_pred EEEEecccEEEEEcC-CCceeecccCCcceEEE-EEEcCCCEEEEEEC--CCCeEEEEEcCCCcc--eEEEcCCCCCcce
Q psy952 19 LIFSNKYYVRNMSLD-ATQYSLVHQDLLNVVAM-DFHYKENRFYFADV--AAKTIYRSRVGSTEK--ERVIRHDSHGLEG 92 (573)
Q Consensus 19 l~~s~~~~I~~i~l~-g~~~~~~~~~~~~~~~v-~~d~~~~~ly~~d~--~~~~I~~~~~~g~~~--~~i~~~~~~~p~g 92 (573)
|++...+.|+++... ..+.--.+....+|.|+ ++.+..++-+.+=. ..|.|+.+++..... ..++......+.-
T Consensus 107 iVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iac 186 (346)
T KOG2111|consen 107 IVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIAC 186 (346)
T ss_pred EEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeE
Confidence 333444455555443 11111122233445543 45666666566544 347899888876544 2344444466777
Q ss_pred eEEeecCCcEEEEeCCCCeEEE-EE-cCCCceeEeccCC--CCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 93 LAVDWVGRKLYWLDRHSKQLDV-AE-LDGTNRKTLKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 93 lavD~~~~~LY~td~~~~~I~~-~~-ldg~~~~~l~~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
|++. ..+.+.-|-+..|++.| ++ .+|.....+..+. ....-||+.|...+|-++. ..+.|....+.+.
T Consensus 187 v~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS--dKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 187 VALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS--DKGTLHIFSLRDT 258 (346)
T ss_pred EEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc--CCCeEEEEEeecC
Confidence 7776 45677777777776554 55 3566666665443 3478999999777766664 4566666665543
No 267
>KOG1273|consensus
Probab=69.14 E-value=1.3e+02 Score=30.11 Aligned_cols=228 Identities=7% Similarity=0.012 Sum_probs=118.0
Q ss_pred cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEEEcCCCCCcceeEEeecCCc
Q psy952 24 KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERVIRHDSHGLEGLAVDWVGRK 101 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i~~~~~~~p~glavD~~~~~ 101 (573)
.++|...++.......++ .....+..|.|.. .++..++.....+|...++- |+-...+... .-+.+..+.+..++
T Consensus 44 nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rirf~--spv~~~q~hp~k~n 120 (405)
T KOG1273|consen 44 NGRVVIYDFDTFRIARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFD--SPVWGAQWHPRKRN 120 (405)
T ss_pred CCcEEEEEccccchhhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEEcc--CccceeeeccccCC
Confidence 456777777765543333 3344467899985 56666677777788888864 4433333221 23456667777888
Q ss_pred EEEEeCCCCeEEEEEcCCCceeEecc----CCC-CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCC
Q psy952 102 LYWLDRHSKQLDVAELDGTNRKTLKT----AIQ-DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIA 176 (573)
Q Consensus 102 LY~td~~~~~I~~~~ldg~~~~~l~~----~~~-~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~ 176 (573)
.+++-...-.-++..+.....++|.. .+. .+.-..+|+...+||.-. ..+.|...+........-.. -....
T Consensus 121 ~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt--sKGkllv~~a~t~e~vas~r-its~~ 197 (405)
T KOG1273|consen 121 KCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT--SKGKLLVYDAETLECVASFR-ITSVQ 197 (405)
T ss_pred eEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEec--CcceEEEEecchheeeeeee-echhe
Confidence 88876544444455554433334431 111 244446777666666544 25666666655432111110 01123
Q ss_pred CCceEEEeccCCeEEEEeCCCCeEEEEeCC-----CCcEEEEEeCC--c-cc--eeEEEee--eCCeEEEecCCCCceEE
Q psy952 177 WPNALTLDYFTERLYWADAHLDYIASVDLD-----GKHKHIVISGQ--K-VP--HVFALTL--FEDHIYWTDWNTKSINR 244 (573)
Q Consensus 177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~d-----G~~~~~l~~~~--~-~~--~p~~ia~--~~~~lywtd~~~~~I~~ 244 (573)
....|.+. ..++-+........|..++.. |....+-.... . +. .-..+.+ .+.+|.-+-...+++|.
T Consensus 198 ~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYI 276 (405)
T KOG1273|consen 198 AIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYI 276 (405)
T ss_pred eeeEEEEe-ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEE
Confidence 34566665 455566666666666666543 22111110000 0 00 1112223 33444444556677777
Q ss_pred EeccCCcceEEEcc
Q psy952 245 ADKFNGRDYRVLRN 258 (573)
Q Consensus 245 ~~~~~g~~~~~l~~ 258 (573)
-.+..|+.+++|..
T Consensus 277 WE~~~GsLVKILhG 290 (405)
T KOG1273|consen 277 WEKSIGSLVKILHG 290 (405)
T ss_pred EecCCcceeeeecC
Confidence 77777777777643
No 268
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=69.09 E-value=1.4e+02 Score=30.67 Aligned_cols=144 Identities=13% Similarity=0.077 Sum_probs=67.5
Q ss_pred CCCEEEEEECCCCeEEEEEcCCCcce---EEEc--CCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc-CCCceeEec-c
Q psy952 55 KENRFYFADVAAKTIYRSRVGSTEKE---RVIR--HDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL-DGTNRKTLK-T 127 (573)
Q Consensus 55 ~~~~ly~~d~~~~~I~~~~~~g~~~~---~i~~--~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l-dg~~~~~l~-~ 127 (573)
.+++||+. ...+.|+.+++++.... .+.. ..+..|...+ .++||+.+.. +.++.++. +|...=... .
T Consensus 67 ~dg~v~~~-~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~----~G~i~~g~~~-g~~y~ld~~~G~~~W~~~~~ 140 (370)
T COG1520 67 GDGTVYVG-TRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS----DGKIYVGSWD-GKLYALDASTGTLVWSRNVG 140 (370)
T ss_pred eCCeEEEe-cCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe----CCeEEEeccc-ceEEEEECCCCcEEEEEecC
Confidence 47788887 34457777777664421 1111 1223333332 6778888754 37777777 565432211 1
Q ss_pred C-CCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecC-CCCCCCceEEEeccCCeEEEEeCC-CCeEEEE
Q psy952 128 A-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHE-DDIAWPNALTLDYFTERLYWADAH-LDYIASV 203 (573)
Q Consensus 128 ~-~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~-~~l~~P~glaiD~~~~~LYw~D~~-~~~I~~~ 203 (573)
. .......++ ..+.+|+.. ..++++.++.+ |..+=..-... ..+......+ ...+.+|+.... ...++.+
T Consensus 141 ~~~~~~~~~v~--~~~~v~~~s--~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~~vy~~~~~~~~~~~a~ 214 (370)
T COG1520 141 GSPYYASPPVV--GDGTVYVGT--DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--IASGTVYVGSDGYDGILYAL 214 (370)
T ss_pred CCeEEecCcEE--cCcEEEEec--CCCeEEEEEccCCcEEEEEecCCccccccccCce--eecceEEEecCCCcceEEEE
Confidence 2 001111111 245666653 24556666655 43322211000 0122222222 246777777543 3456666
Q ss_pred eC-CCCcE
Q psy952 204 DL-DGKHK 210 (573)
Q Consensus 204 ~~-dG~~~ 210 (573)
+. +|...
T Consensus 215 ~~~~G~~~ 222 (370)
T COG1520 215 NAEDGTLK 222 (370)
T ss_pred EccCCcEe
Confidence 66 45443
No 269
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.84 E-value=1.3e+02 Score=29.87 Aligned_cols=206 Identities=12% Similarity=0.073 Sum_probs=103.6
Q ss_pred eEEEEEEcCCCE-EEEEECCCCeEEEEEcCCCcc-eEEEcCCCC--CcceeEEeecCCcEEEEe----CCCCeEEEEEcC
Q psy952 47 VVAMDFHYKENR-FYFADVAAKTIYRSRVGSTEK-ERVIRHDSH--GLEGLAVDWVGRKLYWLD----RHSKQLDVAELD 118 (573)
Q Consensus 47 ~~~v~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~-~~i~~~~~~--~p~glavD~~~~~LY~td----~~~~~I~~~~ld 118 (573)
-.+|++++...+ |+++-....-.+.+++++... .++.+..-. .=.| .|.+.+..||-|+ ...+.|-+++.+
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs~dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG-VFSPDGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc-ccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence 346666665543 444443333445555555332 222221100 0011 1344577888886 346788888887
Q ss_pred CCceeE--eccCCCCcceEEEeCCCceEEEEecCC--cCeEEEEe--ccCCCc-EEEEe-----cCCCCCCC--------
Q psy952 119 GTNRKT--LKTAIQDPRGITLHPGIGYVYFSSWNL--QAYIGKIG--MDGSNF-TRILT-----HEDDIAWP-------- 178 (573)
Q Consensus 119 g~~~~~--l~~~~~~P~~Iavdp~~g~LYwtd~~~--~~~I~r~~--ldG~~~-~~l~~-----~~~~l~~P-------- 178 (573)
....++ +-+....|..+.+-+..+.|-+++.+. .+...|.. +|-... .+++. .-++...|
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSi 228 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSI 228 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcce
Confidence 554443 224455699999999888888887531 22222222 221111 11110 00112223
Q ss_pred ceEEEeccCCeEEEEeCCCC------eEEEEeCCCCcEEEEEeCCc-----cceeEEEeee--CCeEEEecCCCCceEEE
Q psy952 179 NALTLDYFTERLYWADAHLD------YIASVDLDGKHKHIVISGQK-----VPHVFALTLF--EDHIYWTDWNTKSINRA 245 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~~~------~I~~~~~dG~~~~~l~~~~~-----~~~p~~ia~~--~~~lywtd~~~~~I~~~ 245 (573)
.-|+++ .+++|++.....+ -+.-+...|...+.+-.... ..+.-+||+. .+.+-.|-...++....
T Consensus 229 RHld~g-~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~ 307 (366)
T COG3490 229 RHLDIG-RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIW 307 (366)
T ss_pred eeeeeC-CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEE
Confidence 467777 4677777654432 11111112222222211100 1234567774 67788888888887778
Q ss_pred eccCCcceE
Q psy952 246 DKFNGRDYR 254 (573)
Q Consensus 246 ~~~~g~~~~ 254 (573)
++.+|..+.
T Consensus 308 da~tG~vv~ 316 (366)
T COG3490 308 DAATGAVVS 316 (366)
T ss_pred EcCCCcEEe
Confidence 888887554
No 270
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=68.83 E-value=3.2 Score=39.67 Aligned_cols=35 Identities=43% Similarity=0.959 Sum_probs=27.2
Q ss_pred ccccCCCCCccCCccccCCCCccccCCCCceecCCC
Q psy952 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDG 382 (573)
Q Consensus 347 ~~C~~~~~~~C~~~C~~~~~~~~C~C~~~f~c~~~~ 382 (573)
++|.. .+..|.+.|.+..++|.|.|+.+|.+...+
T Consensus 188 ~~C~~-~~~~c~~~C~~~~g~~~c~c~~g~~~~~~~ 222 (224)
T cd01475 188 DLCAT-LSHVCQQVCISTPGSYLCACTEGYALLEDN 222 (224)
T ss_pred hhhcC-CCCCccceEEcCCCCEEeECCCCccCCCCC
Confidence 34544 445677789999999999999999986654
No 271
>KOG0274|consensus
Probab=68.33 E-value=1.9e+02 Score=31.73 Aligned_cols=220 Identities=14% Similarity=0.064 Sum_probs=117.3
Q ss_pred cccEEEEEcCCCc-eee-cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc
Q psy952 24 KYYVRNMSLDATQ-YSL-VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK 101 (573)
Q Consensus 24 ~~~I~~i~l~g~~-~~~-~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~ 101 (573)
...|+..+..... ... +.-..+.+.+++|.. .+.++++-.....++..+...+.-.-++... .-.+..++ ..+.
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh--~stv~~~~-~~~~ 302 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGH--TSSVRCLT-IDPF 302 (537)
T ss_pred CceeEEeecccceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCC--CceEEEEE-ccCc
Confidence 3445445543322 222 334456688999987 6677777777778888886654433333321 22222333 4455
Q ss_pred EEEEeCCCCeEEEEEcCCCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCCCc
Q psy952 102 LYWLDRHSKQLDVAELDGTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAWPN 179 (573)
Q Consensus 102 LY~td~~~~~I~~~~ldg~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~P~ 179 (573)
+..+-+....|.|-++.... ..++.......+.|.++ ..+||-... ...|.+-+.. +.-...+ ...-.+..
T Consensus 303 ~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~--d~~v~VW~~~~~~cl~sl---~gH~~~V~ 375 (537)
T KOG0274|consen 303 LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY--DGTVKVWDPRTGKCLKSL---SGHTGRVY 375 (537)
T ss_pred eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec--CceEEEEEhhhceeeeee---cCCcceEE
Confidence 66665566788888887444 34443455567888887 445554432 2334333333 2222222 23334556
Q ss_pred eEEEeccCCeEEEEeCCCCeEEEEeCCCC-cEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952 180 ALTLDYFTERLYWADAHLDYIASVDLDGK-HKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRN 258 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~-~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~~ 258 (573)
.|+++.. .++|=. +....|..-++.+. .....+.+. .....++.+. +.++++....+.|..=+..+++.++++..
T Consensus 376 sl~~~~~-~~~~Sg-s~D~~IkvWdl~~~~~c~~tl~~h-~~~v~~l~~~-~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 376 SLIVDSE-NRLLSG-SLDTTIKVWDLRTKRKCIHTLQGH-TSLVSSLLLR-DNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred EEEecCc-ceEEee-eeccceEeecCCchhhhhhhhcCC-cccccccccc-cceeEeccccccEEEeecccCceeeeecc
Confidence 7777733 555543 33467888888776 322222211 1112333333 44555555556676666777777777755
No 272
>KOG0284|consensus
Probab=68.23 E-value=47 Score=34.15 Aligned_cols=139 Identities=11% Similarity=0.072 Sum_probs=83.4
Q ss_pred CCEEEEEecccEEEEEcCCC-ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCCCCCccee
Q psy952 16 KPWLIFSNKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRHDSHGLEGL 93 (573)
Q Consensus 16 ~~~l~~s~~~~I~~i~l~g~-~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~~~~p~gl 93 (573)
..|+-.++.+.|+..+..-. +.+++....-.+..++|++..+.|+.....+ .|...+...+. ..++... -..+.++
T Consensus 193 skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn-lVKlWDprSg~cl~tlh~H-KntVl~~ 270 (464)
T KOG0284|consen 193 SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN-LVKLWDPRSGSCLATLHGH-KNTVLAV 270 (464)
T ss_pred ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc-eeEeecCCCcchhhhhhhc-cceEEEE
Confidence 34777788888887776533 3333322333488999999777776665444 67777765432 2222222 2456667
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCC-CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDG-TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI 158 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg-~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~ 158 (573)
.+...+ +...|-+....+.++|+.. +...++...-...+.++-+|....||.+-. ..+.|...
T Consensus 271 ~f~~n~-N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg-~Dgsvvh~ 334 (464)
T KOG0284|consen 271 KFNPNG-NWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGG-SDGSVVHW 334 (464)
T ss_pred EEcCCC-CeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeecc-CCCceEEE
Confidence 776544 5666666677888888761 111112234455788888998888887763 23344433
No 273
>KOG1517|consensus
Probab=66.93 E-value=1.3e+02 Score=35.25 Aligned_cols=176 Identities=14% Similarity=0.141 Sum_probs=95.9
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEcCCCcceE-EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec--
Q psy952 50 MDFHYKENRFYFADVAAKTIYRSRVGSTEKER-VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-- 126 (573)
Q Consensus 50 v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~-i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-- 126 (573)
++|.-..|.||.+.- ...|...+.+-..... |-...-..+..|.-|-.+++++++-...|+|.++|..-..+..++
T Consensus 1171 ~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1171 VDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred eehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence 344445677887643 4456666665332211 111122467888888888999999999999999886554443322
Q ss_pred --cC--CCCcceEEEeCCCceE-EEEecCCcCeEEEEeccCCCcEEEEecCCCCCC-----CceEEEeccCCeEEEEeCC
Q psy952 127 --TA--IQDPRGITLHPGIGYV-YFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAW-----PNALTLDYFTERLYWADAH 196 (573)
Q Consensus 127 --~~--~~~P~~Iavdp~~g~L-Ywtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~-----P~glaiD~~~~~LYw~D~~ 196 (573)
.. .....++.+-+ +|+- .++- +..+.|+..++.+...+.++ .-...| -..|++. ....|+-+-..
T Consensus 1250 ~R~h~~~~~Iv~~slq~-~G~~elvSg-s~~G~I~~~DlR~~~~e~~~--~iv~~~~yGs~lTal~VH-~hapiiAsGs~ 1324 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQR-QGLGELVSG-SQDGDIQLLDLRMSSKETFL--TIVAHWEYGSALTALTVH-EHAPIIASGSA 1324 (1387)
T ss_pred ecccCCcccceeEEeec-CCCcceeee-ccCCeEEEEecccCcccccc--eeeeccccCccceeeeec-cCCCeeeecCc
Confidence 11 11134444444 2332 2222 34677888877775444333 122222 2457776 34445544333
Q ss_pred CCeEEEEeCCCCcEEEEEeC-----CccceeEEEeeeCCeE
Q psy952 197 LDYIASVDLDGKHKHIVISG-----QKVPHVFALTLFEDHI 232 (573)
Q Consensus 197 ~~~I~~~~~dG~~~~~l~~~-----~~~~~p~~ia~~~~~l 232 (573)
..|..+++.|....++... ++..++..|+++.-++
T Consensus 1325 -q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~ 1364 (1387)
T KOG1517|consen 1325 -QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRL 1364 (1387)
T ss_pred -ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhH
Confidence 7788888888766554432 1234455566554433
No 274
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=65.83 E-value=1.5e+02 Score=29.75 Aligned_cols=100 Identities=17% Similarity=0.091 Sum_probs=57.1
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCCCCceEEEeccCCeEEEEeCCCC-eEEEEeCCCCc
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVDLDGKH 209 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~-~I~~~~~dG~~ 209 (573)
+.+|+.- +++|..+- ..+|....++... ...... -.. ....+.+...+++|+++|...+ .+.+++.++..
T Consensus 91 V~ai~~~--~~~lv~~~---g~~l~v~~l~~~~~l~~~~~--~~~-~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~ 162 (321)
T PF03178_consen 91 VTAICSF--NGRLVVAV---GNKLYVYDLDNSKTLLKKAF--YDS-PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNK 162 (321)
T ss_dssp EEEEEEE--TTEEEEEE---TTEEEEEEEETTSSEEEEEE--E-B-SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-
T ss_pred ceEhhhh--CCEEEEee---cCEEEEEEccCcccchhhhe--ecc-eEEEEEEeccccEEEEEEcccCEEEEEEEccCCE
Confidence 5555554 67776665 4567777777666 333221 111 1145556666899999998766 35555665555
Q ss_pred EEEEEeCCccceeEEEeee--CCeEEEecCCC
Q psy952 210 KHIVISGQKVPHVFALTLF--EDHIYWTDWNT 239 (573)
Q Consensus 210 ~~~l~~~~~~~~p~~ia~~--~~~lywtd~~~ 239 (573)
...+..........++.+. ++.+..+|...
T Consensus 163 l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~g 194 (321)
T PF03178_consen 163 LILVARDYQPRWVTAAEFLVDEDTIIVGDKDG 194 (321)
T ss_dssp EEEEEEESS-BEEEEEEEE-SSSEEEEEETTS
T ss_pred EEEEEecCCCccEEEEEEecCCcEEEEEcCCC
Confidence 5555553223345666654 44677777653
No 275
>KOG0306|consensus
Probab=65.66 E-value=2.3e+02 Score=31.79 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=99.1
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEE------EEcC
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDV------AELD 118 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~------~~ld 118 (573)
.+.+.-|-+ .++..++...+|.|..+++.... .+++-+. -+....|++-+. +.=++|-+...+|.. .+..
T Consensus 414 y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AH-dgaIWsi~~~pD-~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 414 YILASKFVP-GDRYIVLGTKNGELQVFDLASASLVETIRAH-DGAIWSISLSPD-NKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred cEEEEEecC-CCceEEEeccCCceEEEEeehhhhhhhhhcc-ccceeeeeecCC-CCceEEecCCcEEEEEeEEEEeccC
Confidence 344555554 33444445567788888876543 3433222 245566666553 344555555554422 2234
Q ss_pred CCceeEec-------cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeE
Q psy952 119 GTNRKTLK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERL 190 (573)
Q Consensus 119 g~~~~~l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~L 190 (573)
|+..++|- .--...-.+++.|...+|-++=- +..+....||.-...+-+ -+-..| ..|-|.| +.+|
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL--dnTVkVyflDtlKFflsL---YGHkLPV~smDIS~-DSkl 564 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL--DNTVKVYFLDTLKFFLSL---YGHKLPVLSMDISP-DSKL 564 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec--cCeEEEEEecceeeeeee---cccccceeEEeccC-CcCe
Confidence 55555432 12234678889997777766642 456666666654332221 122334 3566654 4556
Q ss_pred EEEeCCCC--eEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceEEE
Q psy952 191 YWADAHLD--YIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSINRA 245 (573)
Q Consensus 191 Yw~D~~~~--~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~~~ 245 (573)
.++-+... +|+-.++.--.+..++.. ...+.+.+ ...++|||-...+.|.+-
T Consensus 565 ivTgSADKnVKiWGLdFGDCHKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDCHKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQW 619 (888)
T ss_pred EEeccCCCceEEeccccchhhhhhhccc---CceeEEEEcccceeEEEecCcceEEee
Confidence 66654433 455544433333333332 13455655 467899998877777654
No 276
>KOG4289|consensus
Probab=65.11 E-value=6.2 Score=46.50 Aligned_cols=76 Identities=26% Similarity=0.600 Sum_probs=49.2
Q ss_pred cceee-eccceeecCCCCCCCcccCCcccc-CCCeeeec--ceeeCCcCCCCCCCCCCCCCCC----ccccCCCCCccCC
Q psy952 288 TTVAD-MIRSVYLGSGNKENSTCSSSQFRC-NNGKCIDY--HLVCNKESDCEDDSDEPLHCNV----DECAKVETNQCGH 359 (573)
Q Consensus 288 ~~~~C-Cp~~~~l~~d~~~~~~C~~~~~~C-~~g~Ci~~--~~~cd~~~~c~d~sde~~~c~~----~~C~~~~~~~C~~ 359 (573)
++.+| ||.||...--.+.++.|-+++ | ++|+|... .|.|-+.++..- . .|.+ ..|.+ ..|.+
T Consensus 1220 nglrCrCPpGFTgd~CeTeiDlCYs~p--C~nng~C~srEggYtCeCrpg~tG----e-hCEvs~~agrCvp---GvC~n 1289 (2531)
T KOG4289|consen 1220 NGLRCRCPPGFTGDYCETEIDLCYSGP--CGNNGRCRSREGGYTCECRPGFTG----E-HCEVSARAGRCVP---GVCKN 1289 (2531)
T ss_pred CceeEeCCCCCCcccccchhHhhhcCC--CCCCCceEEecCceeEEecCCccc----c-ceeeecccCcccc---ceecC
Confidence 46789 999998754444477776554 5 47788876 688865554432 2 4432 34544 66777
Q ss_pred --ccccCC-CCccccCC
Q psy952 360 --KCVDTL-TGYYCECN 373 (573)
Q Consensus 360 --~C~~~~-~~~~C~C~ 373 (573)
+|.+.. +.+.|.|+
T Consensus 1290 ggtC~~~~nggf~c~Cp 1306 (2531)
T KOG4289|consen 1290 GGTCVNLLNGGFCCHCP 1306 (2531)
T ss_pred CCEEeecCCCceeccCC
Confidence 786654 66777787
No 277
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=65.10 E-value=5.5 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.1
Q ss_pred CCcceEEEeCCCceEEEEec
Q psy952 130 QDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~ 149 (573)
..|.+||||+ .|.+|++-+
T Consensus 13 ~~~~~IavD~-~GNiYv~G~ 31 (38)
T PF06739_consen 13 DYGNGIAVDS-NGNIYVTGY 31 (38)
T ss_pred eeEEEEEECC-CCCEEEEEe
Confidence 4599999998 789999864
No 278
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=64.73 E-value=67 Score=31.85 Aligned_cols=82 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC
Q psy952 109 SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE 188 (573)
Q Consensus 109 ~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~ 188 (573)
..+|+.+.+-|...+. +.. .-=||+...+.||+--|-..+.+++-.-+|+....+. ........+-++...=
T Consensus 19 ~~~iY~felvG~~P~S---GGD--TYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~~~IdF~---NKYSHVH~yd~e~~~V 90 (339)
T PF09910_consen 19 SEKIYRFELVGPPPTS---GGD--TYNAVEWVDDFIYFGGWVHAPAVYEGKGDGRATIDFR---NKYSHVHEYDTENDSV 90 (339)
T ss_pred ceEEEEeeeccCCCCC---CCc--cceeeeeecceEEEeeeecCCceeeeccCCceEEEEe---eccceEEEEEcCCCeE
Confidence 3466666665544321 111 1234555578899988877777888777776333333 3444344433333334
Q ss_pred eEEEEeCCCC
Q psy952 189 RLYWADAHLD 198 (573)
Q Consensus 189 ~LYw~D~~~~ 198 (573)
+|.|.++-.+
T Consensus 91 rLLWkesih~ 100 (339)
T PF09910_consen 91 RLLWKESIHD 100 (339)
T ss_pred EEEEecccCC
Confidence 5677665433
No 279
>KOG0264|consensus
Probab=64.56 E-value=1.8e+02 Score=30.23 Aligned_cols=114 Identities=8% Similarity=0.109 Sum_probs=73.1
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-------eEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-------ERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-------~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
-.||.|.....-...+-...+.|...+++.... .+++...-..++.+++......||-+-...+.+..-++..
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 456777765555555555667777777765432 2333333457888999999999998887778887777653
Q ss_pred --Cce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 120 --TNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 120 --~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
... ......-.....+++.|.+++|.-|-. ...+|...++.
T Consensus 260 ~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S-~D~tV~LwDlR 303 (422)
T KOG0264|consen 260 NTSKPSHSVKAHSAEVNCVAFNPFNEFILATGS-ADKTVALWDLR 303 (422)
T ss_pred CCCCCcccccccCCceeEEEeCCCCCceEEecc-CCCcEEEeech
Confidence 111 112234455788999998888887763 34555555443
No 280
>KOG0292|consensus
Probab=64.46 E-value=2.7e+02 Score=32.08 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=82.2
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceE-EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeEe
Q psy952 49 AMDFHYKENRFYFADVAAKTIYRSRVGSTE-KER-VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKTL 125 (573)
Q Consensus 49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~-i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~l 125 (573)
-.+|++ +--|+++......|.-..++-+. .++ ......+.+.++-+++ ...|..+.+..+.|.|-+++... +.++
T Consensus 211 waAfhp-TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp-~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 211 WAAFHP-TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHP-HQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred eEEecC-CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecC-ccceeEecCCCccEEEEecccccceeee
Confidence 445554 44677776666655555554332 221 1223457888899986 56788899999999999987543 2333
Q ss_pred ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 126 KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 126 ~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
...-.+-.-||.+| +.+||-+- ..+.+++..++- .+-..+|. ++.||+.. ...|+..++
T Consensus 289 rrendRFW~laahP-~lNLfAAg--HDsGm~VFkleR--------------Erpa~~v~--~n~LfYvk--d~~i~~~d~ 347 (1202)
T KOG0292|consen 289 RRENDRFWILAAHP-ELNLFAAG--HDSGMIVFKLER--------------ERPAYAVN--GNGLFYVK--DRFIRSYDL 347 (1202)
T ss_pred eccCCeEEEEEecC-Ccceeeee--cCCceEEEEEcc--------------cCceEEEc--CCEEEEEc--cceEEeeec
Confidence 33334466788888 67777664 223333333321 12344554 45555544 466777777
Q ss_pred CCCcEEEE
Q psy952 206 DGKHKHIV 213 (573)
Q Consensus 206 dG~~~~~l 213 (573)
....-..+
T Consensus 348 ~t~~d~~v 355 (1202)
T KOG0292|consen 348 RTQKDTAV 355 (1202)
T ss_pred ccccccee
Confidence 66433333
No 281
>KOG0275|consensus
Probab=64.02 E-value=1.6e+02 Score=29.38 Aligned_cols=175 Identities=11% Similarity=0.022 Sum_probs=79.0
Q ss_pred CCCceeeCCCCCCEEEEEec-ccEEEEEcCCCceeecccC-CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eE
Q psy952 5 DESTCKRRDSIKPWLIFSNK-YYVRNMSLDATQYSLVHQD-LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ER 81 (573)
Q Consensus 5 dg~~C~~~~~~~~~l~~s~~-~~I~~i~l~g~~~~~~~~~-~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~ 81 (573)
.|.+|...+....-|+-+.. +.++.-.|.....-.-..+ ...+....|...+..|. +-...+.|...+...+.- .+
T Consensus 307 kGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtvkvW~~KtteC~~T 385 (508)
T KOG0275|consen 307 KGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHII-SASSDGTVKVWHGKTTECLST 385 (508)
T ss_pred cCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEE-EecCCccEEEecCcchhhhhh
Confidence 46677665543334443333 3333333433221111112 22344556665555444 334556677776654421 11
Q ss_pred EEcCCC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCC---CCcceEEEeCCCceEEEEecCCcCeEEE
Q psy952 82 VIRHDS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIGK 157 (573)
Q Consensus 82 i~~~~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~---~~P~~Iavdp~~g~LYwtd~~~~~~I~r 157 (573)
+-..+. ..+..+.+=+.+---|+.-...++|+++++.|..++.+.++- ..-..-++.|...++|-.. ....++-
T Consensus 386 fk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig--ED~vlYC 463 (508)
T KOG0275|consen 386 FKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG--EDGVLYC 463 (508)
T ss_pred ccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc--cCcEEEE
Confidence 100000 111222222222222222234567788888887777665422 2234456778777777664 3455555
Q ss_pred Eec-cCCCcEEEEecCCCCCCCceEEEec
Q psy952 158 IGM-DGSNFTRILTHEDDIAWPNALTLDY 185 (573)
Q Consensus 158 ~~l-dG~~~~~l~~~~~~l~~P~glaiD~ 185 (573)
... .|....++. -.-..|.||+-.|
T Consensus 464 F~~~sG~LE~tl~---VhEkdvIGl~HHP 489 (508)
T KOG0275|consen 464 FSVLSGKLERTLP---VHEKDVIGLTHHP 489 (508)
T ss_pred EEeecCceeeeee---cccccccccccCc
Confidence 443 344333332 1112356666543
No 282
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=62.79 E-value=1.5e+02 Score=28.74 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=24.7
Q ss_pred ceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 220 PHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 220 ~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
..|..|++.++.|.++- .+....++..++....++
T Consensus 139 ~~~~~i~~~~~~i~v~~--~~~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 139 DPPSSIAFLGNKICVGT--SKGFYLIDLNTGSPSELL 173 (275)
T ss_pred CCcEEEEEeCCEEEEEe--CCceEEEecCCCCceEEe
Confidence 47899999999999886 344556676666555544
No 283
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=61.10 E-value=1.9e+02 Score=29.12 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=75.5
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc-eeE
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN-RKT 124 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~-~~~ 124 (573)
.+.+|..-. .+.++++. ..+.|++..-.|..-+.+.........+++....++ |++-...+.+++.--.|.. -+.
T Consensus 105 s~~~i~~l~-~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~--~vavs~~G~~~~s~~~G~~~w~~ 180 (302)
T PF14870_consen 105 SPFGITALG-DGSAELAG-DRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGR--YVAVSSRGNFYSSWDPGQTTWQP 180 (302)
T ss_dssp -EEEEEEEE-TTEEEEEE-TT--EEEESSTTSSEEEEE-S----EEEEEE-TTS---EEEEETTSSEEEEE-TT-SS-EE
T ss_pred CeeEEEEcC-CCcEEEEc-CCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCc--EEEEECcccEEEEecCCCccceE
Confidence 455554432 45666554 457899877667776776665556666666554333 4433356667665444432 222
Q ss_pred e-ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCC-CCCce-EEEeccCCeEEEEeCCCCeEE
Q psy952 125 L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI-AWPNA-LTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 125 l-~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l-~~P~g-laiD~~~~~LYw~D~~~~~I~ 201 (573)
. .....+...|.+.|. +.|+.+.. ...|.+.+ ++............+ ..-.+ |.+.+....-.|+-.+.+.+.
T Consensus 181 ~~r~~~~riq~~gf~~~-~~lw~~~~--Gg~~~~s~-~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~ 256 (302)
T PF14870_consen 181 HNRNSSRRIQSMGFSPD-GNLWMLAR--GGQIQFSD-DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLL 256 (302)
T ss_dssp EE--SSS-EEEEEE-TT-S-EEEEET--TTEEEEEE--TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EE
T ss_pred EccCccceehhceecCC-CCEEEEeC--CcEEEEcc-CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEE
Confidence 2 223456788889985 66666652 45566665 222222222000111 11112 444444556666666777777
Q ss_pred EEeCCCCcEEEEEeCCc-cceeEEEeeeC
Q psy952 202 SVDLDGKHKHIVISGQK-VPHVFALTLFE 229 (573)
Q Consensus 202 ~~~~dG~~~~~l~~~~~-~~~p~~ia~~~ 229 (573)
+..-.|..=+....... ..+.+.|.+..
T Consensus 257 ~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 257 VSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp EESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred EeCCCCccceECccccCCCCceEEEEEcC
Confidence 76655554333322111 22456665543
No 284
>KOG0645|consensus
Probab=60.53 E-value=1.7e+02 Score=28.60 Aligned_cols=191 Identities=15% Similarity=0.082 Sum_probs=0.0
Q ss_pred EecccEEEEEcCCCceeecccCC-----cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCCCCCcceeEE
Q psy952 22 SNKYYVRNMSLDATQYSLVHQDL-----LNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHDSHGLEGLAV 95 (573)
Q Consensus 22 s~~~~I~~i~l~g~~~~~~~~~~-----~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~~~~p~glav 95 (573)
+....|+..++.+...-.....+ +.++.+|+-|.++.|--+....-...-.+.++. .-..++...-..+..+|+
T Consensus 34 g~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaw 113 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAW 113 (312)
T ss_pred cCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEE
Q ss_pred eecCCcEEEEeCCCCeEEEEEcCC----CceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec
Q psy952 96 DWVGRKLYWLDRHSKQLDVAELDG----TNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH 171 (573)
Q Consensus 96 D~~~~~LY~td~~~~~I~~~~ldg----~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~ 171 (573)
. ..+++.-|-+....+++-..+. .-..+|-........++-+|..+.||=...-..-++++...++...-+..
T Consensus 114 s-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~t-- 190 (312)
T KOG0645|consen 114 S-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQT-- 190 (312)
T ss_pred c-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEE--
Q ss_pred CCCCC-CCceEEEeccCCeEEEEeCCCC-eEEE--EeCCCCcEEEEEe
Q psy952 172 EDDIA-WPNALTLDYFTERLYWADAHLD-YIAS--VDLDGKHKHIVIS 215 (573)
Q Consensus 172 ~~~l~-~P~glaiD~~~~~LYw~D~~~~-~I~~--~~~dG~~~~~l~~ 215 (573)
.+.-. ..-++++|+.+.||--++.... +|++ .++.+...+.++.
T Consensus 191 l~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~ 238 (312)
T KOG0645|consen 191 LDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGMHSRALYD 238 (312)
T ss_pred ecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchhcccceEe
No 285
>KOG3621|consensus
Probab=60.49 E-value=2.8e+02 Score=30.93 Aligned_cols=180 Identities=12% Similarity=0.208 Sum_probs=87.8
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-----cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-----EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-----~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
..+.++.|+....+||..|. .|+|.-..|+.. ....|+... . .=+-+|....+|.++...+ .| .++.+-
T Consensus 125 ~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s~~~~~~~~q~il~~d--s-~IVQlD~~q~~LLVStl~r-~~-Lc~tE~ 198 (726)
T KOG3621|consen 125 CRVTALEWSKNGMKLYSGDS-QGKVVLTELDSRQAFLSKSQEILSED--S-EIVQLDYLQSYLLVSTLTR-CI-LCQTEA 198 (726)
T ss_pred ceEEEEEecccccEEeecCC-CceEEEEEechhhhhccccceeeccC--c-ceEEeecccceehHhhhhh-hh-eeecch
Confidence 35889999999999999885 456777777761 122222211 1 1245676677776665322 11 122221
Q ss_pred CceeEecc-CCCC--cceEEEeC-----CCceEEEEecCCcCeEEEEeccCCCcEEEEec--------------------
Q psy952 120 TNRKTLKT-AIQD--PRGITLHP-----GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-------------------- 171 (573)
Q Consensus 120 ~~~~~l~~-~~~~--P~~Iavdp-----~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-------------------- 171 (573)
...+.+.. .-.. +.|-.+-| ..-.||-+-. ..+++.++++|...++..-.
T Consensus 199 eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRP--G~RlWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~ 276 (726)
T KOG3621|consen 199 ETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARP--GLRLWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPN 276 (726)
T ss_pred hHHHHhcCCCcCCccccceEEeeccccCCCceEEEecC--CCceEEeecceeEEEeeehhhhhccCCCCcccCCCcCCcc
Confidence 11111111 0000 22222222 1224555432 45778888888765554310
Q ss_pred -------CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEE-eCCccceeEEEeeeCCeEEEecCCC
Q psy952 172 -------EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI-SGQKVPHVFALTLFEDHIYWTDWNT 239 (573)
Q Consensus 172 -------~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~-~~~~~~~p~~ia~~~~~lywtd~~~ 239 (573)
+..+..+.-..+. .+..|-|++.+ |+.+++... +++. ... ......++..++.||+-....
T Consensus 277 ~~~~~~~~q~ls~~k~~~l~-~~~vLa~te~G---iyv~d~~~~--~v~l~se~-~~DI~dVs~~~neiFvL~~d~ 345 (726)
T KOG3621|consen 277 QRSLPSGTQHLSLSKSSTLH-SDRVLAWTEVG---IYVFDSNNS--QVYLWSEG-GHDILDVSHCGNEIFVLNLDR 345 (726)
T ss_pred ccCCCCCccccccceeEEee-cceEEEeecce---EEEEEeccc--eEEEeecC-CCceeEEeecCceEEEEecCC
Confidence 0011112222222 12245666644 666665433 3332 222 456667777788888775443
No 286
>KOG0301|consensus
Probab=60.47 E-value=2.8e+02 Score=30.87 Aligned_cols=196 Identities=11% Similarity=0.112 Sum_probs=99.7
Q ss_pred cccEEEEEcCCCceeecc-cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcE
Q psy952 24 KYYVRNMSLDATQYSLVH-QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL 102 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~~~-~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~L 102 (573)
...|.+..+++...-..+ ....++-++.... .+. .++........+..+. .-...+.. ....+.+++. ...+.
T Consensus 80 D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~~-~l~~~l~g-H~asVWAv~~--l~e~~ 153 (745)
T KOG0301|consen 80 DTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRIG-ELVYSLQG-HTASVWAVAS--LPENT 153 (745)
T ss_pred cceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecch-hhhcccCC-cchheeeeee--cCCCc
Confidence 344555555554433222 2344566777653 333 3443333322222221 11111211 1234454444 45569
Q ss_pred EEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEE
Q psy952 103 YWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182 (573)
Q Consensus 103 Y~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~gla 182 (573)
|+|-+....|..-.- |+..+++.....-.||||+-+..++|=..+ .+.|..-+++|........ .+.+ -..|+
T Consensus 154 ~vTgsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~flScsN---Dg~Ir~w~~~ge~l~~~~g-htn~--vYsis 226 (745)
T KOG0301|consen 154 YVTGSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHFLSCSN---DGSIRLWDLDGEVLLEMHG-HTNF--VYSIS 226 (745)
T ss_pred EEeccCcceeeeccC-CchhhhhccchhheeeeEEecCCCeEeecC---CceEEEEeccCceeeeeec-cceE--EEEEE
Confidence 999887777765443 555555655666799999999777775554 6788888998877655542 1222 23333
Q ss_pred EeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEec
Q psy952 183 LDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTD 236 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd 236 (573)
. .-++.+.++-...+++..-..+ .-.+.|... ....-+..+ ..+.|++.-
T Consensus 227 ~-~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lP--ttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 227 M-ALSDGLIVSTGEDRTLRIWKKD-ECVQVITLP--TTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred e-cCCCCeEEEecCCceEEEeecC-ceEEEEecC--ccceEEEEEeeCCCEEEec
Confidence 2 2345566666555554444333 222222211 112334444 356666653
No 287
>KOG0271|consensus
Probab=59.49 E-value=2.2e+02 Score=29.36 Aligned_cols=34 Identities=9% Similarity=0.071 Sum_probs=23.4
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE 80 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~ 80 (573)
.+..+.|.+ ++...++..+...++..+++...+.
T Consensus 117 ~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~ 150 (480)
T KOG0271|consen 117 AVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPL 150 (480)
T ss_pred cEEEEEecC-CCceEEecCCCceEEeeccCCCCcc
Confidence 366788887 6666777777777777777655443
No 288
>KOG3545|consensus
Probab=58.53 E-value=1e+02 Score=29.72 Aligned_cols=136 Identities=15% Similarity=0.193 Sum_probs=74.1
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcc--eEEE-cCCCCCc----------ceeEEeecCC-cEEEEeCCCCeEEEEEcCCCc
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEK--ERVI-RHDSHGL----------EGLAVDWVGR-KLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~--~~i~-~~~~~~p----------~glavD~~~~-~LY~td~~~~~I~~~~ldg~~ 121 (573)
++.+|+--.....|.++++..... +..+ ..+...+ ..+|+|..+= -||-|....+.|.+..|+-..
T Consensus 77 nGs~yynk~~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~skLdp~t 156 (249)
T KOG3545|consen 77 NGSLYYNKAGTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSKLDPET 156 (249)
T ss_pred cceEEeeccCCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeeccCHHH
Confidence 678888887788899999876211 1122 2223344 6789995432 255567778889888888743
Q ss_pred eeEec---cCCCC---cceEEEeCCCceEEEEecCC--cCeE-EEEeccCCCc-EEEEecCCCCCCCceEEEeccCCeEE
Q psy952 122 RKTLK---TAIQD---PRGITLHPGIGYVYFSSWNL--QAYI-GKIGMDGSNF-TRILTHEDDIAWPNALTLDYFTERLY 191 (573)
Q Consensus 122 ~~~l~---~~~~~---P~~Iavdp~~g~LYwtd~~~--~~~I-~r~~ldG~~~-~~l~~~~~~l~~P~glaiD~~~~~LY 191 (573)
.++.. +.+.. -.+..| =|.||..++.. ...| +..+...... .+-+--......-..|-..|.+.+||
T Consensus 157 l~~e~tW~T~~~k~~~~~aF~i---CGvLY~v~S~~~~~~~i~yaydt~~~~~~~~~ipf~N~y~~~~~idYNP~D~~LY 233 (249)
T KOG3545|consen 157 LEVERTWNTTLPKRSAGNAFMI---CGVLYVVHSYNCTHTQISYAYDTTTGTQERIDLPFPNPYSYATMIDYNPRDRRLY 233 (249)
T ss_pred hheeeeeccccCCCCcCceEEE---eeeeEEEeccccCCceEEEEEEcCCCceecccccccchhhhhhccCCCcccceee
Confidence 33322 22222 234444 47899998642 2344 3444432221 11110011122224566677788999
Q ss_pred EEe
Q psy952 192 WAD 194 (573)
Q Consensus 192 w~D 194 (573)
.=|
T Consensus 234 ~wd 236 (249)
T KOG3545|consen 234 AWD 236 (249)
T ss_pred Eec
Confidence 855
No 289
>KOG0321|consensus
Probab=57.80 E-value=2.4e+02 Score=31.07 Aligned_cols=72 Identities=4% Similarity=-0.008 Sum_probs=51.4
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE--EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER--VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
..+..|.+-+ .+.++++-.+...|.-++++++...- +.......+..+++-..+..+|++-...+.|.+-++
T Consensus 101 nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~ 174 (720)
T KOG0321|consen 101 NAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDC 174 (720)
T ss_pred ceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEE
Confidence 3466777776 77788888888899999987753211 122223578889999889999999888887765544
No 290
>KOG0269|consensus
Probab=57.52 E-value=3.3e+02 Score=30.77 Aligned_cols=138 Identities=12% Similarity=0.099 Sum_probs=86.4
Q ss_pred cccEEEEEcCC--Ccee--ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecC
Q psy952 24 KYYVRNMSLDA--TQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVG 99 (573)
Q Consensus 24 ~~~I~~i~l~g--~~~~--~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~ 99 (573)
...|...+|.- .+.. ..-..-..+.-|+|+..+-.|.++....+.|.-+++............-..++.+++-+..
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 34566666654 2211 2223345578999999999999999999999999987654433333345688999999888
Q ss_pred CcEEEEeCCCCeEEEEEcCCCceeEe--ccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 100 RKLYWLDRHSKQLDVAELDGTNRKTL--KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 100 ~~LY~td~~~~~I~~~~ldg~~~~~l--~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
++.|++-...|.++..|+.-..+-.+ ...-.-..-+-.+| ..-|.+..|+...|..-+|.+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP--nr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP--NREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC--CCceeeecCCCccEEEEeccCC
Confidence 99999988888888888765433221 11111123334455 2334444455555655566543
No 291
>KOG4497|consensus
Probab=56.20 E-value=1e+02 Score=30.93 Aligned_cols=132 Identities=13% Similarity=0.135 Sum_probs=73.3
Q ss_pred CEEEEEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEe
Q psy952 17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVD 96 (573)
Q Consensus 17 ~~l~~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD 96 (573)
.||...++.++..-+....+...+..-+..+.-|.+-...-.+.-+-...+.|+..++......--+..+......+.-.
T Consensus 21 ~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WS 100 (447)
T KOG4497|consen 21 NYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWS 100 (447)
T ss_pred CeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeEC
Confidence 35555555444333333333322222344455555554444444444445677777775544444444444444455556
Q ss_pred ecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEe
Q psy952 97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 97 ~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd 148 (573)
+.++.|.-+..-.-+|.|-.|.......+.-.-....|++++|...++-...
T Consensus 101 PdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s 152 (447)
T KOG4497|consen 101 PDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS 152 (447)
T ss_pred CCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence 6777777666666688888887766443332333458999999777765554
No 292
>KOG0319|consensus
Probab=54.79 E-value=3.5e+02 Score=30.32 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=86.6
Q ss_pred eeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC-CcceEEE---
Q psy952 9 CKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS-TEKERVI--- 83 (573)
Q Consensus 9 C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g-~~~~~i~--- 83 (573)
++-....+.+|.+|. ...++.+++.+..-.++...-..+.+|+. ...+.|+.+-....++...+++. ......+
T Consensus 329 m~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~-~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~ 407 (775)
T KOG0319|consen 329 MKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDV-WSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQA 407 (775)
T ss_pred eeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeee-cccCcEEEEecCCceEEEEEecCCcchhhhhhhh
Confidence 444545567787775 46788888877765544333333556662 34666676666555544444422 2222121
Q ss_pred cCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc----eeEec------cCCCCcceEEEeCCCceEEEEecC-Cc
Q psy952 84 RHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN----RKTLK------TAIQDPRGITLHPGIGYVYFSSWN-LQ 152 (573)
Q Consensus 84 ~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~----~~~l~------~~~~~P~~Iavdp~~g~LYwtd~~-~~ 152 (573)
...-+.+.++++-..+-..|++-+....|.+-.+..+. ...+. ..-...++++|.| +..|+-|-.- ..
T Consensus 408 ~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDkt 486 (775)
T KOG0319|consen 408 NGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKT 486 (775)
T ss_pred cccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccc
Confidence 11235777888865555667777777777777776521 11121 2445689999999 6677766532 35
Q ss_pred CeEEEEe
Q psy952 153 AYIGKIG 159 (573)
Q Consensus 153 ~~I~r~~ 159 (573)
.+|+.+.
T Consensus 487 aKiW~le 493 (775)
T KOG0319|consen 487 AKIWDLE 493 (775)
T ss_pred eeeeccc
Confidence 6777776
No 293
>smart00284 OLF Olfactomedin-like domains.
Probab=53.97 E-value=2.2e+02 Score=27.78 Aligned_cols=104 Identities=14% Similarity=0.094 Sum_probs=62.0
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCcee--EeccC------------CCCcceEEEeCCCce--EEEEecCCcCeEEEEeccC
Q psy952 99 GRKLYWLDRHSKQLDVAELDGTNRK--TLKTA------------IQDPRGITLHPGIGY--VYFSSWNLQAYIGKIGMDG 162 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~~ldg~~~~--~l~~~------------~~~P~~Iavdp~~g~--LYwtd~~~~~~I~r~~ldG 162 (573)
++.||+--.....|.+++|....+. .++.. ...=-.+|||. +|. ||-|. ...+.|..+.||-
T Consensus 83 ngslYY~~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE-~GLWvIYat~-~~~g~ivvSkLnp 160 (255)
T smart00284 83 NGSLYFNKFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDE-NGLWVIYATE-QNAGKIVISKLNP 160 (255)
T ss_pred CceEEEEecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcC-CceEEEEecc-CCCCCEEEEeeCc
Confidence 6899998888889999999877653 23321 11235889997 453 33333 3356788777776
Q ss_pred CCcEEEEecCCCCCCC---ceEEEeccCCeEEEEeCC---CCeEE-EEeCCC
Q psy952 163 SNFTRILTHEDDIAWP---NALTLDYFTERLYWADAH---LDYIA-SVDLDG 207 (573)
Q Consensus 163 ~~~~~l~~~~~~l~~P---~glaiD~~~~~LYw~D~~---~~~I~-~~~~dG 207 (573)
....+..+=...+..+ +++.|- |.||.+++. ..+|. .+|...
T Consensus 161 ~tL~ve~tW~T~~~k~sa~naFmvC---GvLY~~~s~~~~~~~I~yayDt~t 209 (255)
T smart00284 161 ATLTIENTWITTYNKRSASNAFMIC---GILYVTRSLGSKGEKVFYAYDTNT 209 (255)
T ss_pred ccceEEEEEEcCCCcccccccEEEe---eEEEEEccCCCCCcEEEEEEECCC
Confidence 5544432212344333 345554 899999862 23443 345554
No 294
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=53.93 E-value=2.9e+02 Score=29.11 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCeEEEEeCCCCeEEEEeCCCCcEE--EEE--------eCCccceeEEEeeeCCeEEEecC---CCCceEEEec
Q psy952 187 TERLYWADAHLDYIASVDLDGKHKH--IVI--------SGQKVPHVFALTLFEDHIYWTDW---NTKSINRADK 247 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~~~~dG~~~~--~l~--------~~~~~~~p~~ia~~~~~lywtd~---~~~~I~~~~~ 247 (573)
.+.||. .+..+|+.+...|..-- .+. ..+ ...+..++-+++.++|--. +..+|++++-
T Consensus 192 r~~I~~--fG~~TiEvf~nTGasd~~~~~y~r~pg~~Iq~G-cAa~~s~~~~~~t~~wlg~~~~G~~sVy~~~g 262 (469)
T PF11134_consen 192 RREIWC--FGASTIEVFYNTGASDFTQPPYQRQPGAMIQKG-CAAKHSKTKFGNTVAWLGHDATGAPSVYRING 262 (469)
T ss_pred eeeEEE--EecccEEEEEccCCcccccchhhhCCcceeecc-ccccceeeecCCEEEEeccCCCCCceEEEecC
Confidence 444444 35567888877764332 111 111 3456777788999999743 3567887763
No 295
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=53.69 E-value=1.6e+02 Score=29.55 Aligned_cols=60 Identities=10% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCEEEEEecccEEEEEcCCCc-eeeccc--CCcceEEEEEEcCCCEEEEEECCCC-eEEEEEcCCC
Q psy952 16 KPWLIFSNKYYVRNMSLDATQ-YSLVHQ--DLLNVVAMDFHYKENRFYFADVAAK-TIYRSRVGST 77 (573)
Q Consensus 16 ~~~l~~s~~~~I~~i~l~g~~-~~~~~~--~~~~~~~v~~d~~~~~ly~~d~~~~-~I~~~~~~g~ 77 (573)
..+|+++.+..|+.+.++... +..... ....+..|. ..++.|++.|...+ .+++++.++.
T Consensus 98 ~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~--~~~~~I~vgD~~~sv~~~~~~~~~~ 161 (321)
T PF03178_consen 98 NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLS--VFKNYILVGDAMKSVSLLRYDEENN 161 (321)
T ss_dssp TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEE--EETTEEEEEESSSSEEEEEEETTTE
T ss_pred CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEe--ccccEEEEEEcccCEEEEEEEccCC
Confidence 456777888888888887665 332211 112344444 44778999998765 3445555433
No 296
>KOG0299|consensus
Probab=53.63 E-value=2.9e+02 Score=29.06 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=35.0
Q ss_pred ceeeCCCCCCEEEEEec-ccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECC
Q psy952 8 TCKRRDSIKPWLIFSNK-YYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVA 65 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s~~-~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~ 65 (573)
.|.+.+....||+.+.. +.|...+.+..+......+. ..+.+++|-..+..||.+...
T Consensus 206 l~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 206 LTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred EEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecC
Confidence 35555555567776654 34445556655443333333 346789998888888887654
No 297
>KOG0639|consensus
Probab=53.46 E-value=3.1e+02 Score=29.32 Aligned_cols=157 Identities=8% Similarity=0.073 Sum_probs=79.1
Q ss_pred CCceeeCCCCCCEEEEEecccEEEEEcCCCceeeccc---CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcc-eE
Q psy952 6 ESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQ---DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEK-ER 81 (573)
Q Consensus 6 g~~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~~~~~---~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~ 81 (573)
=++||-......+|+-.....+...+|.....++-.. ....-.+||+.+ +.+|-|+--..+.|..+++-.... ..
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~Vrq 546 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQ 546 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeec
Confidence 4677765543333332333455556665443322211 112345777776 456666777778899888854321 11
Q ss_pred EEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEecc-C-CCCcceEEEeCCCceEEEEecCCcCeEEEEe
Q psy952 82 VIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-A-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIG 159 (573)
Q Consensus 82 i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~-~-~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ 159 (573)
+ ...-....-|.|... +.=.||-...+.|.--+|.. .+.+.. . -.....|-.-|...+|-+-. .++.++...
T Consensus 547 f-qGhtDGascIdis~d-GtklWTGGlDntvRcWDlre--grqlqqhdF~SQIfSLg~cP~~dWlavGM--ens~vevlh 620 (705)
T KOG0639|consen 547 F-QGHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLRE--GRQLQQHDFSSQIFSLGYCPTGDWLAVGM--ENSNVEVLH 620 (705)
T ss_pred c-cCCCCCceeEEecCC-CceeecCCCccceeehhhhh--hhhhhhhhhhhhheecccCCCccceeeec--ccCcEEEEe
Confidence 1 111123444555433 44558876666666555532 112221 1 12244555556555665554 345677776
Q ss_pred ccCCCcEEEE
Q psy952 160 MDGSNFTRIL 169 (573)
Q Consensus 160 ldG~~~~~l~ 169 (573)
..|..+-.|.
T Consensus 621 ~skp~kyqlh 630 (705)
T KOG0639|consen 621 TSKPEKYQLH 630 (705)
T ss_pred cCCccceeec
Confidence 6666654443
No 298
>KOG0973|consensus
Probab=53.41 E-value=4.2e+02 Score=30.87 Aligned_cols=73 Identities=12% Similarity=0.201 Sum_probs=49.6
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
..+..|.|++ .+.++++-...++|..++...-....++......+.|+++|++++. +-+.+..++|.+.+...
T Consensus 130 ~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky-~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 130 SDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKY-FASQSDDRTLKVWRTSD 202 (942)
T ss_pred CccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCe-eeeecCCceEEEEEccc
Confidence 3477888998 6677777666777877776654444455555678999999997753 34445566666666443
No 299
>KOG0278|consensus
Probab=53.02 E-value=2.2e+02 Score=27.55 Aligned_cols=104 Identities=9% Similarity=0.057 Sum_probs=59.5
Q ss_pred CCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC---ceEEEeccCCeEEEEeCCCCeEEEEeCC
Q psy952 130 QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP---NALTLDYFTERLYWADAHLDYIASVDLD 206 (573)
Q Consensus 130 ~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P---~glaiD~~~~~LYw~D~~~~~I~~~~~d 206 (573)
..+.++.|.+...+|-.++.+ .|.-- |......|- ....| ..-.+.|. ..+|++-.....+++++++
T Consensus 185 s~VtSlEvs~dG~ilTia~gs---sV~Fw--daksf~~lK----s~k~P~nV~SASL~P~-k~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGS---SVKFW--DAKSFGLLK----SYKMPCNVESASLHPK-KEFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred CCCcceeeccCCCEEEEecCc---eeEEe--cccccccee----eccCccccccccccCC-CceEEecCcceEEEEEecc
Confidence 347888999877777666622 23222 222222222 22223 34455544 4889988778889999998
Q ss_pred CCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCceE
Q psy952 207 GKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKSIN 243 (573)
Q Consensus 207 G~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~I~ 243 (573)
...-......+...-...|.+ .++.+|-+-...++|+
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTir 292 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIR 292 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCCceEE
Confidence 655444432221222244555 4677888877777664
No 300
>KOG2111|consensus
Probab=52.60 E-value=2.6e+02 Score=28.10 Aligned_cols=153 Identities=8% Similarity=0.142 Sum_probs=86.3
Q ss_pred cceeEEeecCCcEEEEeCCCCeEEEEEcCCCcee-EeccCCCCcceEE-EeCCCceEEEEecCC-cCeEEEEeccCCCc-
Q psy952 90 LEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRK-TLKTAIQDPRGIT-LHPGIGYVYFSSWNL-QAYIGKIGMDGSNF- 165 (573)
Q Consensus 90 p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~-~l~~~~~~P~~Ia-vdp~~g~LYwtd~~~-~~~I~r~~ldG~~~- 165 (573)
+.++-++ .++|-+.- .++|+|+......+. -.+....+|.|+. +.|.....+.+-.+. .+.|...++.-...
T Consensus 97 I~~V~l~--r~riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~ 172 (346)
T KOG2111|consen 97 IKAVKLR--RDRIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN 172 (346)
T ss_pred eeeEEEc--CCeEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC
Confidence 3444443 44555544 356888776533322 2335667788874 566666666665443 46777777765544
Q ss_pred -EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE-Ee-CCCCcEEEEEeCCccceeEEEeeeCCeEEEe-cCCCCc
Q psy952 166 -TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS-VD-LDGKHKHIVISGQKVPHVFALTLFEDHIYWT-DWNTKS 241 (573)
Q Consensus 166 -~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~-~~-~dG~~~~~l~~~~~~~~p~~ia~~~~~lywt-d~~~~~ 241 (573)
..++ ........-++|. ..|.|.-+-+..+++.| ++ .+|+....+.++..-.+.+.|++-.+..|.+ -...++
T Consensus 173 ~p~~I--~AH~s~Iacv~Ln-~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgT 249 (346)
T KOG2111|consen 173 APSII--NAHDSDIACVALN-LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGT 249 (346)
T ss_pred CceEE--EcccCceeEEEEc-CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCe
Confidence 2334 2223333566776 45666666666676444 44 3677777777765345678888854443333 334556
Q ss_pred eEEEeccC
Q psy952 242 INRADKFN 249 (573)
Q Consensus 242 I~~~~~~~ 249 (573)
|..+...+
T Consensus 250 lHiF~l~~ 257 (346)
T KOG2111|consen 250 LHIFSLRD 257 (346)
T ss_pred EEEEEeec
Confidence 66555444
No 301
>KOG1272|consensus
Probab=52.16 E-value=56 Score=34.25 Aligned_cols=72 Identities=19% Similarity=0.249 Sum_probs=40.9
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce-eEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR-KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~-~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~ 163 (573)
+.+.+||||. +++.-.|-...+.|-+-|+..... .++.+ -.....++|+- +|.| ...+|..-.|++-.++|+
T Consensus 294 g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-kglL-A~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 294 GPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-KGLL-ALSYGDHVQIWKDALKGS 366 (545)
T ss_pred CCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-ccce-eeecCCeeeeehhhhcCC
Confidence 5778999996 455556665667788888766541 11112 11233455543 4444 344455667777666654
No 302
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=52.10 E-value=4.6 Score=26.24 Aligned_cols=25 Identities=32% Similarity=0.884 Sum_probs=17.2
Q ss_pred CCCccCC--ccccCCCCccccCCCCce
Q psy952 353 ETNQCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 353 ~~~~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
++..|.. .|.+..+++.|.|..+|.
T Consensus 4 ~~~~C~~nA~C~~~~~~~~C~C~~Gy~ 30 (36)
T PF12947_consen 4 NNGGCHPNATCTNTGGSYTCTCKPGYE 30 (36)
T ss_dssp GGGGS-TTCEEEE-TTSEEEEE-CEEE
T ss_pred CCCCCCCCcEeecCCCCEEeECCCCCc
Confidence 3456666 788888999999998885
No 303
>PHA03098 kelch-like protein; Provisional
Probab=51.35 E-value=3.6e+02 Score=29.38 Aligned_cols=88 Identities=14% Similarity=0.069 Sum_probs=46.4
Q ss_pred CCEEEEEECCC-----CeEEEEEcCCCcceEEEcCCCCCcc-eeEEeecCCcEEEEeCC------CCeEEEEEcCCCcee
Q psy952 56 ENRFYFADVAA-----KTIYRSRVGSTEKERVIRHDSHGLE-GLAVDWVGRKLYWLDRH------SKQLDVAELDGTNRK 123 (573)
Q Consensus 56 ~~~ly~~d~~~-----~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~~~~~LY~td~~------~~~I~~~~ldg~~~~ 123 (573)
+++||+.-... ..+.++++.....+.+. .+..|. +.++-..+++||+.-.. .+.++++++....-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~--~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEP--PLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCC--CcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 68899875432 35777777654443322 122222 22223357899997531 256888887654333
Q ss_pred EeccCCCCcc---eEEEeCCCceEEEEe
Q psy952 124 TLKTAIQDPR---GITLHPGIGYVYFSS 148 (573)
Q Consensus 124 ~l~~~~~~P~---~Iavdp~~g~LYwtd 148 (573)
.+. .+..|+ ++++ .++.||+..
T Consensus 420 ~~~-~~p~~r~~~~~~~--~~~~iyv~G 444 (534)
T PHA03098 420 KGS-PLPISHYGGCAIY--HDGKIYVIG 444 (534)
T ss_pred ecC-CCCccccCceEEE--ECCEEEEEC
Confidence 322 222221 2222 257899875
No 304
>PHA03098 kelch-like protein; Provisional
Probab=49.95 E-value=3.7e+02 Score=29.22 Aligned_cols=174 Identities=10% Similarity=0.100 Sum_probs=85.4
Q ss_pred CCCEEEEEECCC------CeEEEEEcCCCcceEEEcCCCCCcc-eeEEeecCCcEEEEeCC-----CCeEEEEEcCCCce
Q psy952 55 KENRFYFADVAA------KTIYRSRVGSTEKERVIRHDSHGLE-GLAVDWVGRKLYWLDRH-----SKQLDVAELDGTNR 122 (573)
Q Consensus 55 ~~~~ly~~d~~~------~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~~~~~LY~td~~-----~~~I~~~~ldg~~~ 122 (573)
.++.||+..... ..++++++.......+. .+..|+ +.++-..+++||+.-.. ...++++++....-
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~--~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVP--ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECC--CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 367888875321 35778887655443321 222121 12222357899997542 24577777665433
Q ss_pred eEeccCCCCcc-eEEEeCCCceEEEEecCC-----cCeEEEEeccCCCcEEEEecCCCCCCCc-eEEEeccCCeEEEEeC
Q psy952 123 KTLKTAIQDPR-GITLHPGIGYVYFSSWNL-----QAYIGKIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTERLYWADA 195 (573)
Q Consensus 123 ~~l~~~~~~P~-~Iavdp~~g~LYwtd~~~-----~~~I~r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~~LYw~D~ 195 (573)
+.+ ..+..|+ +.++-..++.||+.-... ...+++.++....=..+ ..+..|. +.+.-..+++||+.-.
T Consensus 371 ~~~-~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~----~~~p~~r~~~~~~~~~~~iyv~GG 445 (534)
T PHA03098 371 REE-PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG----SPLPISHYGGCAIYHDGKIYVIGG 445 (534)
T ss_pred eeC-CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec----CCCCccccCceEEEECCEEEEECC
Confidence 322 2222232 122222368999875311 24577777653221111 2222221 1122224789998753
Q ss_pred C--------CCeEEEEeCCCCcEEEEEeCCcccee---EEEeeeCCeEEEecCC
Q psy952 196 H--------LDYIASVDLDGKHKHIVISGQKVPHV---FALTLFEDHIYWTDWN 238 (573)
Q Consensus 196 ~--------~~~I~~~~~dG~~~~~l~~~~~~~~p---~~ia~~~~~lywtd~~ 238 (573)
. ...++++++....=+.+.. ++.| .++++.++.||+.-..
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSS---LNFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCC---CCcccccceEEEECCEEEEEcCC
Confidence 2 1236777765433222221 2222 3455678889987543
No 305
>smart00181 EGF Epidermal growth factor-like domain.
Probab=48.88 E-value=13 Score=23.39 Aligned_cols=24 Identities=33% Similarity=0.945 Sum_probs=19.1
Q ss_pred CccCC-ccccCCCCccccCCCCcee
Q psy952 355 NQCGH-KCVDTLTGYYCECNTGYKL 378 (573)
Q Consensus 355 ~~C~~-~C~~~~~~~~C~C~~~f~c 378 (573)
..|.+ .|.+..+.+.|.|+.+|..
T Consensus 6 ~~C~~~~C~~~~~~~~C~C~~g~~g 30 (35)
T smart00181 6 GPCSNGTCINTPGSYTCSCPPGYTG 30 (35)
T ss_pred CCCCCCEEECCCCCeEeECCCCCcc
Confidence 45666 6888888999999988864
No 306
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=48.33 E-value=3.1e+02 Score=27.79 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=43.6
Q ss_pred CCCEEEEEECCCC-----eEEEEEcCCCcceEEEcCCCCCc----------ceeEEeecC-CcEEEEeCCCCeEEEEEcC
Q psy952 55 KENRFYFADVAAK-----TIYRSRVGSTEKERVIRHDSHGL----------EGLAVDWVG-RKLYWLDRHSKQLDVAELD 118 (573)
Q Consensus 55 ~~~~ly~~d~~~~-----~I~~~~~~g~~~~~i~~~~~~~p----------~glavD~~~-~~LY~td~~~~~I~~~~ld 118 (573)
.++.+|++....+ +||-+..-.+.+++|....+..+ ..+.+|..+ +.+||.|.....|.|+...
T Consensus 192 ~nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaat~ilR~~vs 271 (442)
T PF15416_consen 192 VNGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAATNILRFTVS 271 (442)
T ss_pred cCCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCccceEEEEEcc
Confidence 4788999886543 67777766677777755443322 347777543 4688888777778777765
Q ss_pred C
Q psy952 119 G 119 (573)
Q Consensus 119 g 119 (573)
+
T Consensus 272 n 272 (442)
T PF15416_consen 272 N 272 (442)
T ss_pred C
Confidence 4
No 307
>KOG0283|consensus
Probab=47.92 E-value=4.6e+02 Score=29.63 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=66.6
Q ss_pred ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
+.....+..|+|+|.+.+-|++..-.++|+...+-. .+++....+ ..+.++.+-+. |...+.-+-+|....++..|
T Consensus 406 F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl~~lITAvcy~Pd-Gk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 406 FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDLRDLITAVCYSPD-GKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EecCCeeEEEEecccCCCcEeecccccceEEeecCc--CeeEeehhhhhhheeEEeccC-CceEEEEEeccEEEEEEccC
Confidence 344556899999999999999998888888888743 333433333 34556666654 33444444455555555554
Q ss_pred CceeE---e-cc-----CCCCcceEEEeCCCc-eEEEEecCCcCeEEEEec
Q psy952 120 TNRKT---L-KT-----AIQDPRGITLHPGIG-YVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 120 ~~~~~---l-~~-----~~~~P~~Iavdp~~g-~LYwtd~~~~~~I~r~~l 160 (573)
..... | +. .-....||...|..- .|.+|. ...+|..+++
T Consensus 483 lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--nDSrIRI~d~ 531 (712)
T KOG0283|consen 483 LKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--NDSRIRIYDG 531 (712)
T ss_pred CeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--CCCceEEEec
Confidence 33221 1 11 111466777765333 366665 2456665544
No 308
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=47.66 E-value=6.1 Score=24.83 Aligned_cols=23 Identities=48% Similarity=1.198 Sum_probs=18.2
Q ss_pred CccCC--ccccCC-CCccccCCCCce
Q psy952 355 NQCGH--KCVDTL-TGYYCECNTGYK 377 (573)
Q Consensus 355 ~~C~~--~C~~~~-~~~~C~C~~~f~ 377 (573)
.+|.+ .|.+.. +++.|.|+.+|.
T Consensus 4 ~~C~n~g~C~~~~~~~y~C~C~~G~~ 29 (32)
T PF00008_consen 4 NPCQNGGTCIDLPGGGYTCECPPGYT 29 (32)
T ss_dssp TSSTTTEEEEEESTSEEEEEEBTTEE
T ss_pred CcCCCCeEEEeCCCCCEEeECCCCCc
Confidence 36777 787777 889999998885
No 309
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=47.53 E-value=2.7e+02 Score=26.95 Aligned_cols=224 Identities=13% Similarity=0.092 Sum_probs=114.4
Q ss_pred CCCEEEEEecccEEEEEc-CCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEE-----------
Q psy952 15 IKPWLIFSNKYYVRNMSL-DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERV----------- 82 (573)
Q Consensus 15 ~~~~l~~s~~~~I~~i~l-~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i----------- 82 (573)
....|+++....|+.+.+ +......+.. ...+.-|.+-+.-+.|.+.- ++.|+.++++.-.....
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~-~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRILK-LSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEee-cceEEEEEEecccCEEEEEc--CCccEEEEchhhcccccccccccccccc
Confidence 346788888878999888 3333333222 22266666666566655542 25666666654211110
Q ss_pred ---EcCCCCCcceeE---EeecCCcEEEEeCCCCeEEEEEcCCCce---eEec--cCCCCcceEEEeCCCceEEEEecCC
Q psy952 83 ---IRHDSHGLEGLA---VDWVGRKLYWLDRHSKQLDVAELDGTNR---KTLK--TAIQDPRGITLHPGIGYVYFSSWNL 151 (573)
Q Consensus 83 ---~~~~~~~p~gla---vD~~~~~LY~td~~~~~I~~~~ldg~~~---~~l~--~~~~~P~~Iavdp~~g~LYwtd~~~ 151 (573)
.........-.+ .......|.++- ..+|.++....... +.+. .-...|..|++. ...|.+.-
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~--kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~--- 155 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAV--KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT--- 155 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEE--CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe---
Confidence 001112233333 111222333333 34677766654311 1111 223568888887 46677765
Q ss_pred cCeEEEEeccCCCcEEEEecCC-C--------CCCCce-EEEeccCCeEEEEeCCCCeEEEEeCCCCcEE--EEEeCCcc
Q psy952 152 QAYIGKIGMDGSNFTRILTHED-D--------IAWPNA-LTLDYFTERLYWADAHLDYIASVDLDGKHKH--IVISGQKV 219 (573)
Q Consensus 152 ~~~I~r~~ldG~~~~~l~~~~~-~--------l~~P~g-laiD~~~~~LYw~D~~~~~I~~~~~dG~~~~--~l~~~~~~ 219 (573)
......++++....+.+..... . -..|.+ +.++ ++.+..+- .+.-..++..|...+ .+.-.
T Consensus 156 ~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~--- 228 (275)
T PF00780_consen 156 SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS--DNEFLLCY--DNIGVFVNKNGEPSRKSTIQWS--- 228 (275)
T ss_pred CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC--CceEEEEe--cceEEEEcCCCCcCcccEEEcC---
Confidence 3456777777444444431011 1 112333 3333 23333332 234455677776443 22222
Q ss_pred ceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEEc
Q psy952 220 PHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR 257 (573)
Q Consensus 220 ~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l~ 257 (573)
..|.++++...+|+.... +.|..-+..+|+.++++.
T Consensus 229 ~~p~~~~~~~pyli~~~~--~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 229 SAPQSVAYSSPYLIAFSS--NSIEVRSLETGELVQTIP 264 (275)
T ss_pred CchhEEEEECCEEEEECC--CEEEEEECcCCcEEEEEE
Confidence 378889888888877654 457777778887777664
No 310
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=47.50 E-value=2.7e+02 Score=26.97 Aligned_cols=165 Identities=11% Similarity=0.057 Sum_probs=87.4
Q ss_pred cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEE--cCCCcceEEE-cCCCC-CcceeEEeecC
Q psy952 24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSR--VGSTEKERVI-RHDSH-GLEGLAVDWVG 99 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~--~~g~~~~~i~-~~~~~-~p~glavD~~~ 99 (573)
...|+....++...... . ........||.. +.+|.++........+. .++......+ ...+. .+..|++.+.+
T Consensus 47 ~~~L~~~~~~~~~~~~~-~-g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG 123 (253)
T PF10647_consen 47 GRSLYVGPAGGPVRPVL-T-GGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDG 123 (253)
T ss_pred CCEEEEEcCCCcceeec-c-CCccccccccCC-CCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCC
Confidence 45666666555433322 2 224556679976 88888877554433332 3343332222 22233 67889998888
Q ss_pred CcEEEEe--CCCCeEEEEEc--CCCc-eeEec-------cCCCCcceEEEeCCCceEEEEecCCcCeEE-EEeccCCCcE
Q psy952 100 RKLYWLD--RHSKQLDVAEL--DGTN-RKTLK-------TAIQDPRGITLHPGIGYVYFSSWNLQAYIG-KIGMDGSNFT 166 (573)
Q Consensus 100 ~~LY~td--~~~~~I~~~~l--dg~~-~~~l~-------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~-r~~ldG~~~~ 166 (573)
.+|-+.- ...++|++..+ ++.. ...+. ..+..+.+++=-+....+..+... ...+. .+..+|...+
T Consensus 124 ~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~-~~~~~~~v~~dG~~~~ 202 (253)
T PF10647_consen 124 TRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA-GGPVVRLVSVDGGPST 202 (253)
T ss_pred cEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC-CCceeEEEEccCCccc
Confidence 7765543 33467777543 2222 22221 123345566666644444444432 33333 4778887766
Q ss_pred EEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952 167 RILTHEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
.+. .....+.-+++-.....+|.++.
T Consensus 203 ~l~---~~~~~~~v~a~~~~~~~~~~t~~ 228 (253)
T PF10647_consen 203 PLP---SVNLGVPVVAVAASPSTVYVTDD 228 (253)
T ss_pred ccC---CCCCCcceEEeeCCCcEEEEECC
Confidence 553 22233345565555667777763
No 311
>PRK13684 Ycf48-like protein; Provisional
Probab=47.02 E-value=3.3e+02 Score=27.72 Aligned_cols=197 Identities=11% Similarity=0.027 Sum_probs=94.6
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-DS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
..+|+++. +..|.+ -..+.|++..-.|...+.+... .+ ..+..+... ..+.+|++. ..+.|++..-.|..=+.
T Consensus 92 l~~v~~~~--~~~~~~-G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~-~~~~~~~~g-~~G~i~~S~DgG~tW~~ 166 (334)
T PRK13684 92 LISISFKG--DEGWIV-GQPSLLLHTTDGGKNWTRIPLSEKLPGSPYLITAL-GPGTAEMAT-NVGAIYRTTDGGKNWEA 166 (334)
T ss_pred eeeeEEcC--CcEEEe-CCCceEEEECCCCCCCeEccCCcCCCCCceEEEEE-CCCcceeee-ccceEEEECCCCCCcee
Confidence 45676663 334444 4556788765444444443211 11 233333221 123455443 45677776666655454
Q ss_pred eccC-CCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC-CcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEE
Q psy952 125 LKTA-IQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS-NFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIAS 202 (573)
Q Consensus 125 l~~~-~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~-~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~ 202 (573)
+... .....+|++++...++ .+. ....|++..-+|. .-+.+. ...-...+++++.+ ++++|++- ..+.|..
T Consensus 167 ~~~~~~g~~~~i~~~~~g~~v-~~g--~~G~i~~s~~~gg~tW~~~~--~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 167 LVEDAAGVVRNLRRSPDGKYV-AVS--SRGNFYSTWEPGQTAWTPHQ--RNSSRRLQSMGFQP-DGNLWMLA-RGGQIRF 239 (334)
T ss_pred CcCCCcceEEEEEECCCCeEE-EEe--CCceEEEEcCCCCCeEEEee--CCCcccceeeeEcC-CCCEEEEe-cCCEEEE
Confidence 4432 2346788888854333 222 2456776644443 223333 23334557777764 56666653 3355544
Q ss_pred EeCCCC-cEEEEEeCC--ccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 203 VDLDGK-HKHIVISGQ--KVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 203 ~~~dG~-~~~~l~~~~--~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
...|+. .-+.+.... .....++|++..+.-+|.-...+.|++. ...|+..+.+
T Consensus 240 ~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~S-~d~G~tW~~~ 295 (334)
T PRK13684 240 NDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLVS-KDGGKTWEKD 295 (334)
T ss_pred ccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEEe-CCCCCCCeEC
Confidence 334443 222222110 0124566766533333444455666654 2445555554
No 312
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=46.88 E-value=4.5e+02 Score=29.32 Aligned_cols=201 Identities=12% Similarity=0.139 Sum_probs=98.8
Q ss_pred cceEEEEEEcCCCEEEEE-ECCCC---eEEEEEcCCCcceEEEcCCCC-CcceeEEeecCCcEEEEeCC----CCeEEEE
Q psy952 45 LNVVAMDFHYKENRFYFA-DVAAK---TIYRSRVGSTEKERVIRHDSH-GLEGLAVDWVGRKLYWLDRH----SKQLDVA 115 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~-d~~~~---~I~~~~~~g~~~~~i~~~~~~-~p~glavD~~~~~LY~td~~----~~~I~~~ 115 (573)
....+++..+..+.|-|+ |.... .|...+|..+. .+...+. ...+++....++.||++-.. ..+|++.
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~---~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h 205 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGE---ELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRH 205 (682)
T ss_pred eeeeeeeeCCCCceEEEEEecccccEEEEEEEeccccc---ccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEE
Confidence 345677777777777665 33332 33334443322 1122222 23455555556778887532 2367777
Q ss_pred EcCC--CceeEeccC--CCCcceEEEeCCCceEEEEecC-CcCeEEEEeccCCC--cEEEEecCCCCCCCceEEEe--cc
Q psy952 116 ELDG--TNRKTLKTA--IQDPRGITLHPGIGYVYFSSWN-LQAYIGKIGMDGSN--FTRILTHEDDIAWPNALTLD--YF 186 (573)
Q Consensus 116 ~ldg--~~~~~l~~~--~~~P~~Iavdp~~g~LYwtd~~-~~~~I~r~~ldG~~--~~~l~~~~~~l~~P~glaiD--~~ 186 (573)
.+.+ ..-+.|... -..-.+|--.....+|++.-.+ ..+.|..++++-.. .+++. ..++|+.+. +.
T Consensus 206 ~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~------pr~~g~eY~~eh~ 279 (682)
T COG1770 206 RLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVL------PRENGVEYSVEHG 279 (682)
T ss_pred ecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEE------EcCCCcEEeeeec
Confidence 7766 333333321 1112233333345666666522 24456666655332 23333 345565554 33
Q ss_pred CCeEEEEeCCCC---eEEEEeC--CCCcEEEEEeCCccceeEEEeeeCCeEEEecCCC--CceEEEeccCCcceE
Q psy952 187 TERLYWADAHLD---YIASVDL--DGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT--KSINRADKFNGRDYR 254 (573)
Q Consensus 187 ~~~LYw~D~~~~---~I~~~~~--dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~--~~I~~~~~~~g~~~~ 254 (573)
+++.|+-....+ +|.+... +-.+-+.++....-....++.++.++|.|..... .+|...+..+|+...
T Consensus 280 ~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~ 354 (682)
T COG1770 280 GDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG 354 (682)
T ss_pred CcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee
Confidence 444444332222 4555444 1111122222111345677888999999886654 356666666666554
No 313
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=46.24 E-value=3.6e+02 Score=27.90 Aligned_cols=195 Identities=11% Similarity=0.056 Sum_probs=0.0
Q ss_pred CceeecccCCcceEEEEEEcCCCEEEE-EECCCCeEEEEEcC--CCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCC-
Q psy952 35 TQYSLVHQDLLNVVAMDFHYKENRFYF-ADVAAKTIYRSRVG--STEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSK- 110 (573)
Q Consensus 35 ~~~~~~~~~~~~~~~v~~d~~~~~ly~-~d~~~~~I~~~~~~--g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~- 110 (573)
..+..+........++.+ +++||+ .......+++++++ ......+.......-.+.++-..++.||+.-....
T Consensus 20 ~~l~~lP~~~~~~~~~~~---~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~ 96 (376)
T PRK14131 20 EQLPDLPVPFKNGTGAID---NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKT 96 (376)
T ss_pred ccCCCCCcCccCCeEEEE---CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCC
Q ss_pred ----------eEEEEEcCCCceeEeccCCCCcc-eEEEeC-CCceEEEEecCCc--------------------------
Q psy952 111 ----------QLDVAELDGTNRKTLKTAIQDPR-GITLHP-GIGYVYFSSWNLQ-------------------------- 152 (573)
Q Consensus 111 ----------~I~~~~ldg~~~~~l~~~~~~P~-~Iavdp-~~g~LYwtd~~~~-------------------------- 152 (573)
.++++++....-+.+......++ +-+.-. .++.||+.-....
T Consensus 97 ~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~ 176 (376)
T PRK14131 97 NSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDA 176 (376)
T ss_pred CCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHH
Q ss_pred ------------CeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC------CCCeEEEEeCCCCcEEEEE
Q psy952 153 ------------AYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA------HLDYIASVDLDGKHKHIVI 214 (573)
Q Consensus 153 ------------~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~------~~~~I~~~~~dG~~~~~l~ 214 (573)
..+++.+..-..=..+. .-......+.++-..+++||+.-. ....++.+.++-...+...
T Consensus 177 ~~~~~~~~~~~~~~v~~YD~~t~~W~~~~--~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~ 254 (376)
T PRK14131 177 YFDKKPEDYFFNKEVLSYDPSTNQWKNAG--ESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQK 254 (376)
T ss_pred HhcCChhhcCcCceEEEEECCCCeeeECC--cCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceee
Q ss_pred eCCccceeEE-----------EeeeCCeEEEe
Q psy952 215 SGQKVPHVFA-----------LTLFEDHIYWT 235 (573)
Q Consensus 215 ~~~~~~~p~~-----------ia~~~~~lywt 235 (573)
... ++.|.+ .++.++.||+.
T Consensus 255 ~~~-~p~~~~~~~~~~~~~~~a~~~~~~iyv~ 285 (376)
T PRK14131 255 LPD-LPPAPGGSSQEGVAGAFAGYSNGVLLVA 285 (376)
T ss_pred cCC-CCCCCcCCcCCccceEeceeECCEEEEe
No 314
>KOG0918|consensus
Probab=45.62 E-value=3.7e+02 Score=28.02 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=22.3
Q ss_pred ceeEEeecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952 91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR 122 (573)
Q Consensus 91 ~glavD~~~~~LY~td~~~~~I~~~~ldg~~~ 122 (573)
..|-|.-..+.||++....|-|..++.....+
T Consensus 315 TDilISmDDRFLYvs~WLHGDirQYdIsDP~n 346 (476)
T KOG0918|consen 315 TDILISLDDRFLYVSNWLHGDIRQYDISDPKN 346 (476)
T ss_pred heeEEeecCcEEEEEeeeecceeeeccCCCCC
Confidence 34444445788999998888888887655443
No 315
>KOG2280|consensus
Probab=44.39 E-value=2.8e+02 Score=31.33 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=59.6
Q ss_pred ccCCcceEEEEEEcCC-CEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC
Q psy952 41 HQDLLNVVAMDFHYKE-NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 41 ~~~~~~~~~v~~d~~~-~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg 119 (573)
....+.|++|++++.. ..+| .....|..+++.|.....+.... ..+.+|..+... .|.... ..+++.|.++-|
T Consensus 40 ~Ap~gGpIAV~r~p~~~~~~~---~a~~~I~If~~sG~lL~~~~w~~-~~lI~mgWs~~e-eLI~v~-k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 40 CAPFGGPIAVTRSPSKLVPLY---SARPYIRIFNISGQLLGRILWKH-GELIGMGWSDDE-ELICVQ-KDGTVHVYGLLG 113 (829)
T ss_pred ecccCCceEEEeccccccccc---ccceeEEEEeccccchHHHHhcC-CCeeeecccCCc-eEEEEe-ccceEEEeecch
Confidence 4567789999998732 2344 33446777787776443333322 255555544322 333332 357888888887
Q ss_pred CceeE--ec---------cCCCCcceEEEeCCCceEEEEec
Q psy952 120 TNRKT--LK---------TAIQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 120 ~~~~~--l~---------~~~~~P~~Iavdp~~g~LYwtd~ 149 (573)
..++. +. +....-.|||+-...|.+|....
T Consensus 114 e~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~ 154 (829)
T KOG2280|consen 114 EFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILING 154 (829)
T ss_pred hhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcC
Confidence 66554 21 11111378888777788877763
No 316
>KOG0288|consensus
Probab=44.24 E-value=3.9e+02 Score=27.82 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=48.3
Q ss_pred CCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCcc--ce-eEEEeee-CCeEEEecCCCCceEEEeccCCcc
Q psy952 177 WPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKV--PH-VFALTLF-EDHIYWTDWNTKSINRADKFNGRD 252 (573)
Q Consensus 177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~--~~-p~~ia~~-~~~lywtd~~~~~I~~~~~~~g~~ 252 (573)
....|.+.+....|.-. ...+.+..+++.+...+..++...+ .+ -..+.+- ++.+.-+-...++|+.=+.++|+-
T Consensus 343 ~vtSl~ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ceeeEeeccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceE
Confidence 34566666555555544 6677888888888887766653211 11 1222232 333444455677888777777776
Q ss_pred eEEEcccC
Q psy952 253 YRVLRNTT 260 (573)
Q Consensus 253 ~~~l~~~~ 260 (573)
..++....
T Consensus 422 E~~l~~s~ 429 (459)
T KOG0288|consen 422 EKVLSLST 429 (459)
T ss_pred EEEeccCC
Confidence 66665443
No 317
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=43.38 E-value=4.5e+02 Score=28.30 Aligned_cols=158 Identities=11% Similarity=0.074 Sum_probs=73.3
Q ss_pred cCCCEEEEEEC----CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cC
Q psy952 54 YKENRFYFADV----AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TA 128 (573)
Q Consensus 54 ~~~~~ly~~d~----~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~ 128 (573)
...+.||++.. ....++.++.+|..+-.+......... +-. -.+++|++... ..|..+++.|......- ..
T Consensus 111 ~~~~gl~~~~~~~~~~~~~~~~iD~~G~Vrw~~~~~~~~~~~-~~~-l~nG~ll~~~~--~~~~e~D~~G~v~~~~~l~~ 186 (477)
T PF05935_consen 111 EMEDGLYFVNGNDWDSSSYTYLIDNNGDVRWYLPLDSGSDNS-FKQ-LPNGNLLIGSG--NRLYEIDLLGKVIWEYDLPG 186 (477)
T ss_dssp T-TT-EEEEEETT--BEEEEEEEETTS-EEEEE-GGGT--SS-EEE--TTS-EEEEEB--TEEEEE-TT--EEEEEE--T
T ss_pred ccCCcEEEEeCCCCCCCceEEEECCCccEEEEEccCccccce-eeE-cCCCCEEEecC--CceEEEcCCCCEEEeeecCC
Confidence 34456666655 345677777777654333222111111 222 24567777664 67888888887544321 11
Q ss_pred -C-CCcceEEEeCCCceEEEEec------C-----CcCeEEEEeccCCCcEEEEe--c-----C---------------C
Q psy952 129 -I-QDPRGITLHPGIGYVYFSSW------N-----LQAYIGKIGMDGSNFTRILT--H-----E---------------D 173 (573)
Q Consensus 129 -~-~~P~~Iavdp~~g~LYwtd~------~-----~~~~I~r~~ldG~~~~~l~~--~-----~---------------~ 173 (573)
. ..=..+...|...+|..+.. . ....|..++.+|......-. . . .
T Consensus 187 ~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~ 266 (477)
T PF05935_consen 187 GYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGG 266 (477)
T ss_dssp TEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SST
T ss_pred cccccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCC
Confidence 1 11245666663333333331 1 02345556555544333210 0 0 0
Q ss_pred C--CCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEe
Q psy952 174 D--IAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVIS 215 (573)
Q Consensus 174 ~--l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~ 215 (573)
. -.+-|+|.+|+.++.|+++-...+.|..++.......-++.
T Consensus 267 ~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg 310 (477)
T PF05935_consen 267 GRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILG 310 (477)
T ss_dssp TSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES
T ss_pred CCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeC
Confidence 0 12346899998899999999999999999976666655554
No 318
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=43.10 E-value=4.2e+02 Score=27.86 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=16.7
Q ss_pred eecCCcEEEEeCCCCeEEEEEcCCCce
Q psy952 96 DWVGRKLYWLDRHSKQLDVAELDGTNR 122 (573)
Q Consensus 96 D~~~~~LY~td~~~~~I~~~~ldg~~~ 122 (573)
.|-+..+|-+-.....|++++++|+.+
T Consensus 156 ~~~git~yn~~e~~k~vw~~~fnGsyv 182 (603)
T COG4880 156 EVGGITLYNLYESSKKVWVYNFNGSYV 182 (603)
T ss_pred EeCCEEEEEeccccceeEEEecCCcee
Confidence 344445555544456788888888764
No 319
>KOG0313|consensus
Probab=42.95 E-value=3.9e+02 Score=27.49 Aligned_cols=95 Identities=4% Similarity=-0.003 Sum_probs=59.6
Q ss_pred ecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc---c-eEEEcCCCCCcceeEEeec
Q psy952 23 NKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE---K-ERVIRHDSHGLEGLAVDWV 98 (573)
Q Consensus 23 ~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~---~-~~i~~~~~~~p~glavD~~ 98 (573)
..|.|++.+|.......-+..-.....++|.+ ..+|..+......|...++.... + ..++.. .+.+.++.-.+.
T Consensus 279 wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH-~nwVssvkwsp~ 356 (423)
T KOG0313|consen 279 WDHTIKVWDLETGGLKSTLTTNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH-KNWVSSVKWSPT 356 (423)
T ss_pred ccceEEEEEeecccceeeeecCcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecc-hhhhhheecCCC
Confidence 36889998887443333333445567888887 56677776666677777764322 2 223322 246777777777
Q ss_pred CCcEEEEeCCCCeEEEEEcCC
Q psy952 99 GRKLYWLDRHSKQLDVAELDG 119 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~~ldg 119 (573)
+.++|++-+..+++.+-+...
T Consensus 357 ~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 357 NEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CceEEEEEecCCeEEEEEecc
Confidence 777888877777776666543
No 320
>KOG0277|consensus
Probab=42.89 E-value=3.3e+02 Score=26.56 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=63.0
Q ss_pred cccEEEEEcCCCceee--cccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCCCCCcceeEEeecCC
Q psy952 24 KYYVRNMSLDATQYSL--VHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHDSHGLEGLAVDWVGR 100 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~--~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~~~~p~glavD~~~~ 100 (573)
...++..++.-....+ .......+.++++....++.+++..-.+.|.....+-. ...++ ......+.+.++.+...
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf-~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF-NGHNSCIYQAAFSPHIP 160 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee-cCCccEEEEEecCCCCC
Confidence 3456656643322211 12234458899999999999999988888888776543 33333 22335677788888888
Q ss_pred cEEEEeCCCCeEEEEE--cCCCce
Q psy952 101 KLYWLDRHSKQLDVAE--LDGTNR 122 (573)
Q Consensus 101 ~LY~td~~~~~I~~~~--ldg~~~ 122 (573)
+||-+-++.+....-+ ..|+..
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred CeEEEccCCceEEEEEecCCCcee
Confidence 9988877777555444 445443
No 321
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=42.33 E-value=3.8e+02 Score=27.13 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=27.8
Q ss_pred CCCEEEEEECC-----------CCeEEEEEcCCCcceEEEcCCCCCcc-eeE-EeecCCcEEEEe
Q psy952 55 KENRFYFADVA-----------AKTIYRSRVGSTEKERVIRHDSHGLE-GLA-VDWVGRKLYWLD 106 (573)
Q Consensus 55 ~~~~ly~~d~~-----------~~~I~~~~~~g~~~~~i~~~~~~~p~-gla-vD~~~~~LY~td 106 (573)
.+++||+.--. ...++++++.....+.+.. .+..+. +.+ +-..+++||+.-
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTG 125 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEc
Confidence 36899998642 1357888876654443321 111211 221 112578999974
No 322
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=41.89 E-value=3.9e+02 Score=27.08 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=32.8
Q ss_pred CEEEEEECCC-CeEEEEEcCCCcceEEEc------CCCCCcceeEEeecCCcEEEEe-CCCCeEEEEEcCCCceeEe
Q psy952 57 NRFYFADVAA-KTIYRSRVGSTEKERVIR------HDSHGLEGLAVDWVGRKLYWLD-RHSKQLDVAELDGTNRKTL 125 (573)
Q Consensus 57 ~~ly~~d~~~-~~I~~~~~~g~~~~~i~~------~~~~~p~glavD~~~~~LY~td-~~~~~I~~~~ldg~~~~~l 125 (573)
..|++-+... ..|..++++......-+. .++..+.|+.. ..+.+|+.. ....+|.+++..|...+.+
T Consensus 56 ~yL~f~n~~~~~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~--~~Dsi~l~~~~~~~~l~~~n~~G~~~~~~ 130 (333)
T PF13970_consen 56 KYLYFLNNYKSHSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQ--NLDSIFLFNSYAFPKLFLFNSQGEVLKKI 130 (333)
T ss_dssp EEEEEEE-ST--EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEE--SSSTTSEEEEGGGTEEEEE-TT--EEEEE
T ss_pred EEEEEEcCCCcceEEEEECCCCceeeeeeeeeECCCCccccccceE--cCCceEEEecCCcceEEEEcCCCeEEEEE
Confidence 3444555554 789999988654332221 12445555553 334444443 3456799999999877664
No 323
>KOG4260|consensus
Probab=41.44 E-value=19 Score=34.81 Aligned_cols=84 Identities=20% Similarity=0.498 Sum_probs=53.2
Q ss_pred Cccceee--eccceeecCCCCC-CCcccCCccccC-CCeeeec--ceeeCCcCCCCCCCCCCCCCCC--ccccCCCCCcc
Q psy952 286 GSTTVAD--MIRSVYLGSGNKE-NSTCSSSQFRCN-NGKCIDY--HLVCNKESDCEDDSDEPLHCNV--DECAKVETNQC 357 (573)
Q Consensus 286 ~~~~~~C--Cp~~~~l~~d~~~-~~~C~~~~~~C~-~g~Ci~~--~~~cd~~~~c~d~sde~~~c~~--~~C~~~~~~~C 357 (573)
|.....| |-.||.|...+.. +++|..-..-|. +..|++. +|.|-..++|.-+-|| |.. +.|..
T Consensus 213 g~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g~d~---C~~~~d~~~~------ 283 (350)
T KOG4260|consen 213 GESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKGVDE---CQFCADVCAS------ 283 (350)
T ss_pred CCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCChHH---hhhhhhhccc------
Confidence 3345678 9999999865554 777765555553 4567775 7888766666554332 322 23332
Q ss_pred CC-ccccCCCCccccCCCCcee
Q psy952 358 GH-KCVDTLTGYYCECNTGYKL 378 (573)
Q Consensus 358 ~~-~C~~~~~~~~C~C~~~f~c 378 (573)
.+ .|.|+.+++.|.|..++.-
T Consensus 284 kn~~c~ni~~~~r~v~f~~~~~ 305 (350)
T KOG4260|consen 284 KNRPCMNIDGQYRCVCFSGLII 305 (350)
T ss_pred CCCCcccCCccEEEEeccccee
Confidence 22 6788899999887766543
No 324
>KOG0296|consensus
Probab=41.37 E-value=4.1e+02 Score=27.22 Aligned_cols=164 Identities=8% Similarity=0.023 Sum_probs=87.6
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcE
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~ 166 (573)
..+..+++++ +.+|-.|-.+.+.-++-+.. |...-.+...-.....+.+.... .+..|- .-.+.|....++-...+
T Consensus 65 ~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATG-dmsG~v~v~~~stg~~~ 141 (399)
T KOG0296|consen 65 DSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATG-DMSGKVLVFKVSTGGEQ 141 (399)
T ss_pred CceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEec-CCCccEEEEEcccCceE
Confidence 4667788887 77777777766666555543 33333333444456666666533 332221 22444544444432222
Q ss_pred EEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 167 ~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
..+ ......-.-|...+ ..+++.+-...+.|+...+.-.....+..+...+--.|=-+..++...+-...++|..-+
T Consensus 142 ~~~--~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn 218 (399)
T KOG0296|consen 142 WKL--DQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWN 218 (399)
T ss_pred EEe--ecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEe
Confidence 222 11222223344554 556666777778888888876444445554211211222233344444444578888888
Q ss_pred ccCCcceEEEc
Q psy952 247 KFNGRDYRVLR 257 (573)
Q Consensus 247 ~~~g~~~~~l~ 257 (573)
..+|.....+.
T Consensus 219 ~ktg~p~~~~~ 229 (399)
T KOG0296|consen 219 PKTGQPLHKIT 229 (399)
T ss_pred cCCCceeEEec
Confidence 89998776664
No 325
>KOG0307|consensus
Probab=41.03 E-value=4.6e+02 Score=30.93 Aligned_cols=215 Identities=13% Similarity=0.079 Sum_probs=102.3
Q ss_pred eEEEEEEcCCCEEEEEECCC------------CeEEEEEcCC---CcceEEEc---CCCCCcceeEEeecCCcEEEEeCC
Q psy952 47 VVAMDFHYKENRFYFADVAA------------KTIYRSRVGS---TEKERVIR---HDSHGLEGLAVDWVGRKLYWLDRH 108 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~------------~~I~~~~~~g---~~~~~i~~---~~~~~p~glavD~~~~~LY~td~~ 108 (573)
...+..+.+-++|-|..... |.|.-++.+. ...+.++. ..-+.+.||.|....++|.-+...
T Consensus 58 ~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~ 137 (1049)
T KOG0307|consen 58 VGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGAD 137 (1049)
T ss_pred cccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCC
Confidence 34555666666777765544 3344444432 11111211 113578899999999999988888
Q ss_pred CCeEEEEEcCCCceeEeccCCCCcceEEEeCCCc---eEEEEecCCcCeEEEEeccCCCcEEEEecCCCC---CCCceEE
Q psy952 109 SKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIG---YVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI---AWPNALT 182 (573)
Q Consensus 109 ~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g---~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l---~~P~gla 182 (573)
.+.|..=||+.....--......|..|.+-..++ .|+-+- +...++..-++.... .++. .... ..-++|+
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~-s~sg~~~iWDlr~~~--pii~-ls~~~~~~~~S~l~ 213 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASG-SPSGRAVIWDLRKKK--PIIK-LSDTPGRMHCSVLA 213 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhcc-CCCCCceeccccCCC--cccc-cccCCCccceeeee
Confidence 9999998887532211111111222222211111 111111 111223333333331 1221 1111 1134777
Q ss_pred EeccCCeEEEEeCCCC---eEEEEeCC--CCcEEEEEeCCccceeEEEee--eCCeEEEecCCCCceEEEeccCCcceEE
Q psy952 183 LDYFTERLYWADAHLD---YIASVDLD--GKHKHIVISGQKVPHVFALTL--FEDHIYWTDWNTKSINRADKFNGRDYRV 255 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~---~I~~~~~d--G~~~~~l~~~~~~~~p~~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~~~ 255 (573)
.++..-.-.|+-...+ .|..-|+. .+-.+++ .+. -....+|.+ -+.++..+-...++|..-|..+|+.+..
T Consensus 214 WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-~~H-~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 214 WHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-EGH-QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred eCCCCceeeeeecCCCCCceeEeecccccCCchhhh-ccc-ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 7776554444433332 23333322 2222332 221 234455555 2347777877888888777777776655
Q ss_pred EcccCCCceeee
Q psy952 256 LRNTTHRPYDIH 267 (573)
Q Consensus 256 l~~~~~~p~~i~ 267 (573)
+......-++++
T Consensus 292 ~p~~~nW~fdv~ 303 (1049)
T KOG0307|consen 292 LPAQGNWCFDVQ 303 (1049)
T ss_pred cCCCCcceeeee
Confidence 554444444433
No 326
>KOG4227|consensus
Probab=40.77 E-value=4.3e+02 Score=27.28 Aligned_cols=72 Identities=8% Similarity=0.119 Sum_probs=46.5
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC--CCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD--SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~--~~~p~glavD~~~~~LY~td~~~~~I~~~~ld 118 (573)
.++..|+||..+.+||-. ..-+.+.+-++..+...-++... -+.+.+|.+.++ .++|.+-+..+.|...+..
T Consensus 106 SNIF~L~F~~~N~~~~SG-~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 106 SNIFSLEFDLENRFLYSG-ERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred cceEEEEEccCCeeEecC-CCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEEEEecc
Confidence 578999999876666644 34456666677655443344332 247788888887 6666666666667666653
No 327
>PF11134 Phage_stabilise: Phage stabilisation protein; InterPro: IPR021098 This entry represents the Bacteriophage P22, Gp10, DNA-stabilising protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are phage proteins involved with stabilising the head assembly unit and condensed DNA within the capsid [].
Probab=40.50 E-value=4.7e+02 Score=27.64 Aligned_cols=191 Identities=12% Similarity=0.143 Sum_probs=101.2
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEE--EcCCCCCcceeE-EeecCCcEEEEeCCCCeEEEEEcCCCceeE-
Q psy952 50 MDFHYKENRFYFADVAAKTIYRSRVGST-EKERV--IRHDSHGLEGLA-VDWVGRKLYWLDRHSKQLDVAELDGTNRKT- 124 (573)
Q Consensus 50 v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i--~~~~~~~p~gla-vD~~~~~LY~td~~~~~I~~~~ldg~~~~~- 124 (573)
+++....++..|.-.+.+.++..+|... ....+ ..+.-..|.+|. +....+.||.- +..+|+++.+.|..-.+
T Consensus 139 ~Dv~~~dGryVw~~pgt~~f~vSdL~D~T~~d~~~~~ytAEsqPD~Ivgl~~~r~~I~~f--G~~TiEvf~nTGasd~~~ 216 (469)
T PF11134_consen 139 VDVTRLDGRYVWVKPGTGYFFVSDLEDETKPDRYLDFYTAESQPDNIVGLAVWRREIWCF--GASTIEVFYNTGASDFTQ 216 (469)
T ss_pred eEEEeccceEEEEeCCCceEEEeecccccCcchhhhhhhhccCCCceEEEEEeeeeEEEE--ecccEEEEEccCCccccc
Confidence 4555568888887777888888888653 22222 112223555432 22234455544 34579998888765432
Q ss_pred -ec---cCCCCcceEE----EeCCCceEEEEecCC--cCeEEEEeccCCCcEEEEecCCCCC-------C---CceE--E
Q psy952 125 -LK---TAIQDPRGIT----LHPGIGYVYFSSWNL--QAYIGKIGMDGSNFTRILTHEDDIA-------W---PNAL--T 182 (573)
Q Consensus 125 -l~---~~~~~P~~Ia----vdp~~g~LYwtd~~~--~~~I~r~~ldG~~~~~l~~~~~~l~-------~---P~gl--a 182 (573)
+. .+..-|.|+| +-...+.+||..... .+.|++. +|-....|.+ ..+. . ..++ +
T Consensus 217 ~~y~r~pg~~Iq~GcAa~~s~~~~~~t~~wlg~~~~G~~sVy~~--~gyq~~RIST--~~IE~~l~~ya~~ela~af~et 292 (469)
T PF11134_consen 217 PPYQRQPGAMIQKGCAAKHSKTKFGNTVAWLGHDATGAPSVYRI--NGYQASRIST--HAIEKALRSYAHDELAIAFMET 292 (469)
T ss_pred chhhhCCcceeeccccccceeeecCCEEEEeccCCCCCceEEEe--cCCceeeecc--HHHHHHHHhhccHHHHHHHHHH
Confidence 22 2333455554 233456788876432 3566665 4444444431 1111 1 1122 2
Q ss_pred EeccCCeEEEEeCCCCeEEEEeCCCC---cEEEEEeCCccceeE---EEeeeCCeEEEecCCCCceEEEec
Q psy952 183 LDYFTERLYWADAHLDYIASVDLDGK---HKHIVISGQKVPHVF---ALTLFEDHIYWTDWNTKSINRADK 247 (573)
Q Consensus 183 iD~~~~~LYw~D~~~~~I~~~~~dG~---~~~~l~~~~~~~~p~---~ia~~~~~lywtd~~~~~I~~~~~ 247 (573)
+-..+..+|+.-.- ++.+.++...+ .+.-+........|+ .-.++++.+.+-|+.++.|.++..
T Consensus 293 ~~f~~h~~l~ihlp-~~tlcyD~at~~~~~qw~~l~tg~~~~~~R~~~~~f~~~q~~VGD~~~g~lg~L~~ 362 (469)
T PF11134_consen 293 YQFDGHEFLLIHLP-RKTLCYDAATSQWGEQWFILKTGFYDEPYRAIDFMFFDNQITVGDKQNGLLGALDF 362 (469)
T ss_pred hhcCceEEEEEEcC-CceEEEEcccCCcccceEEEeccccCCcceeeeeEEeCCeeEecccccceeEEecc
Confidence 33346667766544 34556665543 122233322123343 333578899999999999988764
No 328
>KOG0275|consensus
Probab=40.42 E-value=3.9e+02 Score=26.77 Aligned_cols=86 Identities=13% Similarity=0.118 Sum_probs=54.7
Q ss_pred eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeE---EEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVF---ALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~---~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
.+.+=|.+..-++.-...+.|+.+++.|.-++.+.++.+...-+ -+..-++++|-.- ..+.++-++-.+|+..+++
T Consensus 397 sv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 397 SVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred eEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEEEeecCceeeee
Confidence 33444455555555567788999999998888777654322222 2223577888764 4467788888888877776
Q ss_pred cccCCCceee
Q psy952 257 RNTTHRPYDI 266 (573)
Q Consensus 257 ~~~~~~p~~i 266 (573)
......+.||
T Consensus 476 ~VhEkdvIGl 485 (508)
T KOG0275|consen 476 PVHEKDVIGL 485 (508)
T ss_pred eccccccccc
Confidence 5544455554
No 329
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=40.10 E-value=4.1e+02 Score=26.88 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=44.4
Q ss_pred CCEEEEEECC-CCeEEEEEcCC-C-cceEEEcCCCC-Ccc-eeEEeecCCcEEEEeCC-----------CCeEEEEEcCC
Q psy952 56 ENRFYFADVA-AKTIYRSRVGS-T-EKERVIRHDSH-GLE-GLAVDWVGRKLYWLDRH-----------SKQLDVAELDG 119 (573)
Q Consensus 56 ~~~ly~~d~~-~~~I~~~~~~g-~-~~~~i~~~~~~-~p~-glavD~~~~~LY~td~~-----------~~~I~~~~ldg 119 (573)
+++||++--. ...+++++++. . ....+. .+. .++ ..++-..+++||+.-.. ...++++++..
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~--~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECC--CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 5788886432 24677777642 2 222222 121 121 22222357899997642 23577788765
Q ss_pred CceeEeccCCCCcc-eE-EEeCCCceEEEEe
Q psy952 120 TNRKTLKTAIQDPR-GI-TLHPGIGYVYFSS 148 (573)
Q Consensus 120 ~~~~~l~~~~~~P~-~I-avdp~~g~LYwtd 148 (573)
..-+.+......++ +. ++-...+.||+.-
T Consensus 95 ~~W~~~~~~~p~~~~~~~~~~~~~g~IYviG 125 (346)
T TIGR03547 95 NSWQKLDTRSPVGLLGASGFSLHNGQAYFTG 125 (346)
T ss_pred CEEecCCCCCCCcccceeEEEEeCCEEEEEc
Confidence 44333322121221 22 1212368999874
No 330
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=40.06 E-value=4e+02 Score=26.68 Aligned_cols=154 Identities=16% Similarity=0.194 Sum_probs=84.2
Q ss_pred CCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCC-CeEEEEEcCCCceeEeccCCCCcceEEEeCCCce
Q psy952 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHS-KQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGY 143 (573)
Q Consensus 65 ~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~-~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~ 143 (573)
...+||++.+-|..+. ++ .-.-=||+|+.+.|||--... -.+++-.-+|+ +.
T Consensus 18 d~~~iY~felvG~~P~----SG--GDTYNAV~~vDd~IyFGGWVHAPa~y~gk~~g~---------------------~~ 70 (339)
T PF09910_consen 18 DSEKIYRFELVGPPPT----SG--GDTYNAVEWVDDFIYFGGWVHAPAVYEGKGDGR---------------------AT 70 (339)
T ss_pred CceEEEEeeeccCCCC----CC--CccceeeeeecceEEEeeeecCCceeeeccCCc---------------------eE
Confidence 4558888888765543 11 223347889999999876432 12333332332 12
Q ss_pred EEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-------ceEEEeccCCeEEEEeCCCC---eEEEEeCCCCcEEEE
Q psy952 144 VYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-------NALTLDYFTERLYWADAHLD---YIASVDLDGKHKHIV 213 (573)
Q Consensus 144 LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-------~glaiD~~~~~LYw~D~~~~---~I~~~~~dG~~~~~l 213 (573)
|=+++ .-++|...+.+-...+.|. .+.+..| +.|..|+.+++||++-..-+ -|++++..+...+.|
T Consensus 71 IdF~N--KYSHVH~yd~e~~~VrLLW--kesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L 146 (339)
T PF09910_consen 71 IDFRN--KYSHVHEYDTENDSVRLLW--KESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKL 146 (339)
T ss_pred EEEee--ccceEEEEEcCCCeEEEEE--ecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeec
Confidence 22222 2334444444433344444 3333333 46788999999999865432 488888777676666
Q ss_pred EeCCccceeEEEeeeCCeEEEec---CCCCceEEEeccCCcc
Q psy952 214 ISGQKVPHVFALTLFEDHIYWTD---WNTKSINRADKFNGRD 252 (573)
Q Consensus 214 ~~~~~~~~p~~ia~~~~~lywtd---~~~~~I~~~~~~~g~~ 252 (573)
... +.+.|..+.+...|=.. .+...|..+|..+++.
T Consensus 147 ~~~---ps~KG~~~~D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 147 SSN---PSLKGTLVHDYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred cCC---CCcCceEeeeeEEEeccccccCCceEEEEEccCCeE
Confidence 653 35555544443333211 1234567777666654
No 331
>KOG1524|consensus
Probab=40.00 E-value=5.2e+02 Score=28.02 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc-E
Q psy952 24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK-L 102 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~-L 102 (573)
...|+..+-.|---+.+++....+..++|++..+.|.+.....-.|.-..++....+=-...+ .=|.+||.... |
T Consensus 125 DG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDG----iiL~~~W~~~s~l 200 (737)
T KOG1524|consen 125 DGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDG----LVLSLSWSTQSNI 200 (737)
T ss_pred CceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCc----EEEEeecCccccc
Confidence 345555555555445566777778999999999999888655433333333221111001111 12566775433 3
Q ss_pred EEEeCCCCeEEEEEcCCCceeEecc---CCCCcceEEEeCCCceEEEEe
Q psy952 103 YWLDRHSKQLDVAELDGTNRKTLKT---AIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 103 Y~td~~~~~I~~~~ldg~~~~~l~~---~~~~P~~Iavdp~~g~LYwtd 148 (573)
..+-...-+..+-+--|.. |.. .-.-..+||..|.+.++.|+-
T Consensus 201 I~sgGED~kfKvWD~~G~~---Lf~S~~~ey~ITSva~npd~~~~v~S~ 246 (737)
T KOG1524|consen 201 IASGGEDFRFKIWDAQGAN---LFTSAAEEYAITSVAFNPEKDYLLWSY 246 (737)
T ss_pred eeecCCceeEEeecccCcc---cccCChhccceeeeeeccccceeeeee
Confidence 3333332233333333322 332 222367899999877777764
No 332
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=38.08 E-value=1.3e+02 Score=20.34 Aligned_cols=29 Identities=17% Similarity=0.080 Sum_probs=21.0
Q ss_pred eeEEEeeeCCeEEEecCCCCceEEEeccCC
Q psy952 221 HVFALTLFEDHIYWTDWNTKSINRADKFNG 250 (573)
Q Consensus 221 ~p~~ia~~~~~lywtd~~~~~I~~~~~~~g 250 (573)
...+|++.++++|++++..+ +..++-.+-
T Consensus 3 ~a~~v~v~g~yaYva~~~~G-l~IvDISnP 31 (42)
T PF08309_consen 3 DARDVAVSGNYAYVADGNNG-LVIVDISNP 31 (42)
T ss_pred eEEEEEEECCEEEEEeCCCC-EEEEECCCC
Confidence 46789999999999987644 556664443
No 333
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=37.79 E-value=25 Score=22.44 Aligned_cols=24 Identities=8% Similarity=-0.111 Sum_probs=16.7
Q ss_pred cccccccccccCccceee-eccceeecCC
Q psy952 275 TTRHAWLTAHRGSTTVAD-MIRSVYLGSG 302 (573)
Q Consensus 275 ~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d 302 (573)
.|...|-+.. ...| ||.||.+..+
T Consensus 7 ~CpA~CDpn~----~~~C~CPeGyIlde~ 31 (34)
T PF09064_consen 7 ECPADCDPNS----PGQCFCPEGYILDEG 31 (34)
T ss_pred cCCCccCCCC----CCceeCCCceEecCC
Confidence 4555666543 3589 9999998754
No 334
>KOG1310|consensus
Probab=37.70 E-value=5.7e+02 Score=27.82 Aligned_cols=137 Identities=15% Similarity=0.232 Sum_probs=79.4
Q ss_pred ceeeCCCCCCEEEEEecccEEEEEcCCCcee---ecc-cCCcceEEEEEEcCC-CEEEEEECCCCeEEEEEcCCCc----
Q psy952 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVH-QDLLNVVAMDFHYKE-NRFYFADVAAKTIYRSRVGSTE---- 78 (573)
Q Consensus 8 ~C~~~~~~~~~l~~s~~~~I~~i~l~g~~~~---~~~-~~~~~~~~v~~d~~~-~~ly~~d~~~~~I~~~~~~g~~---- 78 (573)
+|-+.. ..+-||.+.....+.+--+-..+. .+. ....++..+-|-+.. ++|.++-.+...|+.++++...
T Consensus 54 N~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~ 132 (758)
T KOG1310|consen 54 NCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGM 132 (758)
T ss_pred cceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccccccccc
Confidence 355544 345555565433333332322222 222 235678888886655 5677787888889999987421
Q ss_pred ----ceEE--EcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCce--------eEec---cCCCCcceEEEeCCC
Q psy952 79 ----KERV--IRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNR--------KTLK---TAIQDPRGITLHPGI 141 (573)
Q Consensus 79 ----~~~i--~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~--------~~l~---~~~~~P~~Iavdp~~ 141 (573)
.+++ ..-...++.-||.-+.+-+.||+-+..|.|...++.-..+ ..++ ..+.....|+|.|.+
T Consensus 133 d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~r 212 (758)
T KOG1310|consen 133 DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSR 212 (758)
T ss_pred ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCC
Confidence 1111 1112457778888877779999999999998887653221 1111 234456777888755
Q ss_pred ceEE
Q psy952 142 GYVY 145 (573)
Q Consensus 142 g~LY 145 (573)
-+++
T Consensus 213 p~~l 216 (758)
T KOG1310|consen 213 PYYL 216 (758)
T ss_pred CceE
Confidence 4443
No 335
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=37.23 E-value=1.2e+02 Score=31.80 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=24.0
Q ss_pred CCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEE
Q psy952 172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHI 212 (573)
Q Consensus 172 ~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~ 212 (573)
+.....|.-+++.+-..+|..-| .++|.++.++..+.++
T Consensus 354 ~~~~~~~~~~~~Sp~~~~Ll~e~--~gki~~~~l~Nr~Pei 392 (733)
T COG4590 354 ERAYQAPQLVAMSPNQAYLLSED--QGKIRLAQLENRNPEI 392 (733)
T ss_pred hhhhcCcceeeeCcccchheeec--CCceEEEEecCCCCCc
Confidence 44455667777776666655543 5677777777655543
No 336
>KOG1226|consensus
Probab=36.61 E-value=1.9e+02 Score=32.58 Aligned_cols=120 Identities=24% Similarity=0.561 Sum_probs=58.2
Q ss_pred cccCCCCCccCC-ccccCCCCccccCC-CCceecC-CCcccccc--cccCCCCCCCCCCCCCCCCCCCCCC-------Cc
Q psy952 348 ECAKVETNQCGH-KCVDTLTGYYCECN-TGYKLLE-DGKACTDI--DECIEQPGVCSQYPAMCHNRPCDKD-------TE 415 (573)
Q Consensus 348 ~C~~~~~~~C~~-~C~~~~~~~~C~C~-~~f~c~~-~~~c~~~~--~~C~~~~~~~~~~~~~C~~~~C~~~-------~~ 415 (573)
.|.-.+++.|+. .|..+..+..|.|+ .++.-.. ..+|-... -.|.+.-+ ..|..-.|.+. ..
T Consensus 468 ~C~g~G~~~CG~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~------C~CGqC~C~~~~~~~i~G~f 541 (783)
T KOG1226|consen 468 LCHGNGTFVCGQCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGD------CVCGQCVCHKPDNGKIYGKF 541 (783)
T ss_pred ccCCCCcEEecceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCc------EeCCceEecCCCCCceeeee
Confidence 344236677888 88888888889888 4443210 11122211 12333222 11211122211 01
Q ss_pred eecCCCcccCC-CcccCCCCCCCCCCCCCCCccCCcCCCCCCc--CCCCC-CCcccc-CCccccCCCCCCCC
Q psy952 416 FACRNGHCIPK-LWVCDFDNDCGDDSDEPAYMCRQRNCTKGWE--RCPGK-TNYRCI-PKWLFCDGKDDCRD 482 (573)
Q Consensus 416 f~C~~g~ci~~-~~~Cd~~~dC~d~sDE~~~~C~~~~C~~~~~--~C~~~-~~~~c~-~~~~~Cdg~~dC~d 482 (573)
+.|.+-.|-.. ..+|.|.-.|. |..-.|.+||+ .|.++ ....|+ +....|.|+-.|.=
T Consensus 542 CECDnfsC~r~~g~lC~g~G~C~---------CG~CvC~~GwtG~~C~C~~std~C~~~~G~iCSGrG~C~C 604 (783)
T KOG1226|consen 542 CECDNFSCERHKGVLCGGHGRCE---------CGRCVCNPGWTGSACNCPLSTDTCESSDGQICSGRGTCEC 604 (783)
T ss_pred eeccCcccccccCcccCCCCeEe---------CCcEEcCCCCccCCCCCCCCCccccCCCCceeCCCceeeC
Confidence 33445555443 34677665553 33334677764 44442 234566 34557888776643
No 337
>KOG4283|consensus
Probab=36.32 E-value=4.5e+02 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.193 Sum_probs=38.4
Q ss_pred ccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC
Q psy952 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST 77 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~ 77 (573)
++|.++.|+... .+..+..+.+..|.+|+.++++.++...++.|..+++...
T Consensus 25 rRil~L~Ln~d~-d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~ 76 (397)
T KOG4283|consen 25 RRILSLQLNNDK-DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNA 76 (397)
T ss_pred hhhheeeccCCc-ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccc
Confidence 567677775432 1222334668899999999999999999999999998653
No 338
>KOG0299|consensus
Probab=35.95 E-value=5.5e+02 Score=27.13 Aligned_cols=200 Identities=15% Similarity=0.188 Sum_probs=98.8
Q ss_pred eeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc-ceEEEcC-------C----------CCCcceeEEeec
Q psy952 37 YSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE-KERVIRH-------D----------SHGLEGLAVDWV 98 (573)
Q Consensus 37 ~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~-~~~i~~~-------~----------~~~p~glavD~~ 98 (573)
+..+......+.+|++-+...++|=+.... .|.+.....+. .+-++.. + ......|||...
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g-~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~D 213 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDG-TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSD 213 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCc-ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCC
Confidence 444445556688999998888888766544 66666653321 1112111 1 122335666654
Q ss_pred CCcEEEEeCCCCeEEEEEcCCC-ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCC
Q psy952 99 GRKLYWLDRHSKQLDVAELDGT-NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAW 177 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~~ldg~-~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~ 177 (573)
++.| .+-.....|.+.+.+.. .++++...-....+|++-.....||.+.... .|...+++-.. ++ .+-+..
T Consensus 214 gkyl-atgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Dr--svkvw~~~~~s---~v--etlyGH 285 (479)
T KOG0299|consen 214 GKYL-ATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADR--SVKVWSIDQLS---YV--ETLYGH 285 (479)
T ss_pred CcEE-EecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCC--ceEEEehhHhH---HH--HHHhCC
Confidence 3333 33333445656665543 3333333333467778776667787765322 23333332111 11 122233
Q ss_pred Cce-EEEeccC-CeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEec
Q psy952 178 PNA-LTLDYFT-ERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADK 247 (573)
Q Consensus 178 P~g-laiD~~~-~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~ 247 (573)
+.+ +.||... +++.-+-....++....+ -...+.++.+. -..+..+++-++.-|++-..++.|.-...
T Consensus 286 qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifrg~-~~sidcv~~In~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFRGG-EGSIDCVAFINDEHFVSGSDNGSIALWSL 355 (479)
T ss_pred ccceeeechhcccceEEeccccceeEEEec-cccceeeeeCC-CCCeeeEEEecccceeeccCCceEEEeee
Confidence 332 2333222 222211112222222233 23344555543 45788888888888888877887765443
No 339
>KOG1036|consensus
Probab=35.30 E-value=4.7e+02 Score=26.15 Aligned_cols=151 Identities=14% Similarity=0.084 Sum_probs=87.4
Q ss_pred cCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc
Q psy952 42 QDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN 121 (573)
Q Consensus 42 ~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~ 121 (573)
++...+..|-|++..+.|.++.+ .+.+..++.........+..+ .-....+|-. ...+|..+ ..+.|.++|+++..
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssW-DgslrlYdv~~~~l~~~~~~~-~plL~c~F~d-~~~~~~G~-~dg~vr~~Dln~~~ 86 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSW-DGSLRLYDVPANSLKLKFKHG-APLLDCAFAD-ESTIVTGG-LDGQVRRYDLNTGN 86 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEec-cCcEEEEeccchhhhhheecC-CceeeeeccC-CceEEEec-cCceEEEEEecCCc
Confidence 34455788999988888888875 456666666554333333332 1223344421 23444443 56789999999988
Q ss_pred eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeE
Q psy952 122 RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 122 ~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I 200 (573)
...|.++..-.+.|...+..+.|.-..|. .+|...++-. ... + ..+..+ .-.++|..+++|.++-.. .+|
T Consensus 87 ~~~igth~~~i~ci~~~~~~~~vIsgsWD--~~ik~wD~R~--~~~-~---~~~d~~kkVy~~~v~g~~LvVg~~~-r~v 157 (323)
T KOG1036|consen 87 EDQIGTHDEGIRCIEYSYEVGCVISGSWD--KTIKFWDPRN--KVV-V---GTFDQGKKVYCMDVSGNRLVVGTSD-RKV 157 (323)
T ss_pred ceeeccCCCceEEEEeeccCCeEEEcccC--ccEEEEeccc--ccc-c---cccccCceEEEEeccCCEEEEeecC-ceE
Confidence 88888777777888888877777666664 3555554433 111 1 122222 233455556666664332 233
Q ss_pred EEEeC
Q psy952 201 ASVDL 205 (573)
Q Consensus 201 ~~~~~ 205 (573)
...++
T Consensus 158 ~iyDL 162 (323)
T KOG1036|consen 158 LIYDL 162 (323)
T ss_pred EEEEc
Confidence 44444
No 340
>PRK13684 Ycf48-like protein; Provisional
Probab=35.23 E-value=5e+02 Score=26.40 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=88.0
Q ss_pred CCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCC-CceeEec-cCCCCcc
Q psy952 56 ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG-TNRKTLK-TAIQDPR 133 (573)
Q Consensus 56 ~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg-~~~~~l~-~~~~~P~ 133 (573)
.+.+|++. ..+.|+|..-.|...+.+.........++++++ +..||.-...+.|++...+| ..-..+. .......
T Consensus 142 ~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~~~--~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~ 218 (334)
T PRK13684 142 PGTAEMAT-NVGAIYRTTDGGKNWEALVEDAAGVVRNLRRSP--DGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ 218 (334)
T ss_pred CCcceeee-ccceEEEECCCCCCceeCcCCCcceEEEEEECC--CCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce
Confidence 34455543 456788776666665554433334566777765 34555555567777764344 3223332 2344578
Q ss_pred eEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCC---CCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc
Q psy952 134 GITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHED---DIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH 209 (573)
Q Consensus 134 ~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~---~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~ 209 (573)
+|++.+. +.+|... ..+.+.+..-| |..-+.+. .. ......++++.+ ++.+|. -...+.|.+..-.|..
T Consensus 219 ~i~~~~~-g~~~~vg--~~G~~~~~s~d~G~sW~~~~--~~~~~~~~~l~~v~~~~-~~~~~~-~G~~G~v~~S~d~G~t 291 (334)
T PRK13684 219 SMGFQPD-GNLWMLA--RGGQIRFNDPDDLESWSKPI--IPEITNGYGYLDLAYRT-PGEIWA-GGGNGTLLVSKDGGKT 291 (334)
T ss_pred eeeEcCC-CCEEEEe--cCCEEEEccCCCCCcccccc--CCccccccceeeEEEcC-CCCEEE-EcCCCeEEEeCCCCCC
Confidence 8888884 5555554 23445443334 33322222 11 111234566654 455554 4455666665433444
Q ss_pred EEEEEe-CCccc-eeEEEeeeCCeEEEecCCCCceEEE
Q psy952 210 KHIVIS-GQKVP-HVFALTLFEDHIYWTDWNTKSINRA 245 (573)
Q Consensus 210 ~~~l~~-~~~~~-~p~~ia~~~~~lywtd~~~~~I~~~ 245 (573)
=+.+.. .. ++ .-+.+.+..+.-.|.-...+.|.+.
T Consensus 292 W~~~~~~~~-~~~~~~~~~~~~~~~~~~~G~~G~il~~ 328 (334)
T PRK13684 292 WEKDPVGEE-VPSNFYKIVFLDPEKGFVLGQRGVLLRY 328 (334)
T ss_pred CeECCcCCC-CCcceEEEEEeCCCceEEECCCceEEEe
Confidence 333321 11 22 3445555433333444455666543
No 341
>KOG0307|consensus
Probab=35.02 E-value=2.5e+02 Score=32.99 Aligned_cols=160 Identities=9% Similarity=-0.023 Sum_probs=87.9
Q ss_pred CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcc---eeEEeecCCcEEEEeCCCCeEEEEEcCCC
Q psy952 44 LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE---GLAVDWVGRKLYWLDRHSKQLDVAELDGT 120 (573)
Q Consensus 44 ~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~---glavD~~~~~LY~td~~~~~I~~~~ldg~ 120 (573)
-+.+.||+|.+..+.|.-+...++.|+..+++....- ........|. .|+-...-.+|+-+-..++++.+-||..+
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~ 194 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK 194 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCC
Confidence 3457899999999999999999999999999863321 1111222333 33322223345555556677777787766
Q ss_pred ceeEecc---CCCCcceEEEeCCCceEEEEecC--CcCeEEEEeccCCC--cEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 121 NRKTLKT---AIQDPRGITLHPGIGYVYFSSWN--LQAYIGKIGMDGSN--FTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 121 ~~~~l~~---~~~~P~~Iavdp~~g~LYwtd~~--~~~~I~r~~ldG~~--~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
...+-++ +-.+-.+|+-+|..-.-.|+-.+ ..+.|..-+|.-.. .+++- ..-....+|..-+.+.+|..+
T Consensus 195 ~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~---~H~~GilslsWc~~D~~lllS 271 (1049)
T KOG0307|consen 195 KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILE---GHQRGILSLSWCPQDPRLLLS 271 (1049)
T ss_pred CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhc---ccccceeeeccCCCCchhhhc
Confidence 3211112 11235588888866554444322 23455544443221 11111 111122345555566677777
Q ss_pred eCCCCeEEEEeCCC
Q psy952 194 DAHLDYIASVDLDG 207 (573)
Q Consensus 194 D~~~~~I~~~~~dG 207 (573)
-...++|..-+...
T Consensus 272 sgkD~~ii~wN~~t 285 (1049)
T KOG0307|consen 272 SGKDNRIICWNPNT 285 (1049)
T ss_pred ccCCCCeeEecCCC
Confidence 77777776666543
No 342
>KOG1034|consensus
Probab=34.97 E-value=4.4e+02 Score=26.66 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred eeeCCCCCCEEEEEe-cccEEEEEcCCCceeecccCCcc-eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCC
Q psy952 9 CKRRDSIKPWLIFSN-KYYVRNMSLDATQYSLVHQDLLN-VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHD 86 (573)
Q Consensus 9 C~~~~~~~~~l~~s~-~~~I~~i~l~g~~~~~~~~~~~~-~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~ 86 (573)
|.......|||..+. ...|+.|++...+...-+.+.+. +..|-+.+.+-.|.++-.....|...++....--.|+..-
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEeccc
Q ss_pred C-CCcceeEEeecCCcEEEEe-CCCCeEEEEEcC
Q psy952 87 S-HGLEGLAVDWVGRKLYWLD-RHSKQLDVAELD 118 (573)
Q Consensus 87 ~-~~p~glavD~~~~~LY~td-~~~~~I~~~~ld 118 (573)
. ++-+=|.||+..+-.|++. ....+|..-+++
T Consensus 178 egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ccccCcEEEEEEcCCCCeeeccCCcceEEEEecC
No 343
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=34.49 E-value=66 Score=27.94 Aligned_cols=56 Identities=18% Similarity=0.517 Sum_probs=26.4
Q ss_pred EEEEcCCCE-EEEEECCCC--eEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeC
Q psy952 50 MDFHYKENR-FYFADVAAK--TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR 107 (573)
Q Consensus 50 v~~d~~~~~-ly~~d~~~~--~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~ 107 (573)
++||..++. ||+-+...+ .|..-.+.+.....++..+.-...| ||+.+.-+||+=.
T Consensus 76 laYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~G--fd~~G~e~fWtVt 134 (136)
T PF14781_consen 76 LAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQG--FDYEGNEIFWTVT 134 (136)
T ss_pred EEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEE--eCCCCcEEEEEec
Confidence 455554443 555555432 3333333332222233333223333 5677888888753
No 344
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=34.49 E-value=34 Score=21.42 Aligned_cols=22 Identities=41% Similarity=1.138 Sum_probs=16.6
Q ss_pred ccCC--ccccCCCCccccCCCCce
Q psy952 356 QCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 356 ~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
.|.+ .|.+..+.+.|.|+.+|.
T Consensus 10 ~C~~~~~C~~~~~~~~C~C~~g~~ 33 (38)
T cd00054 10 PCQNGGTCVNTVGSYRCSCPPGYT 33 (38)
T ss_pred CcCCCCEeECCCCCeEeECCCCCc
Confidence 4643 688888889999887775
No 345
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=34.05 E-value=1e+02 Score=25.97 Aligned_cols=53 Identities=15% Similarity=0.062 Sum_probs=28.9
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCC
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHL 197 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~ 197 (573)
-|-|++||..=+|...|.. .+.|..-. ..+.-.-.|+|+||.++.+.-+....
T Consensus 9 ~R~i~LDp~GYfiI~~d~~-~~~i~a~h------------~~n~I~~~Gla~Dpetge~i~~~g~~ 61 (119)
T PF14251_consen 9 QRFIDLDPAGYFIIYVDRE-AGEICAEH------------YTNDIDDKGLAVDPETGEVIPCRGKV 61 (119)
T ss_pred cCccccCCCccEEEEEeCC-CCeeeHhh------------ccCccCcccceeCCCCCCEEEEecCC
Confidence 4678999954344444421 22221111 11222335899999888877666543
No 346
>KOG0283|consensus
Probab=33.92 E-value=7.4e+02 Score=28.03 Aligned_cols=150 Identities=11% Similarity=0.132 Sum_probs=77.6
Q ss_pred EEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cC
Q psy952 50 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TA 128 (573)
Q Consensus 50 v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~ 128 (573)
|++.+..+.+.++......+...++....--.++.. ...+..+||.++..+-|++-+..++|..=++-... ++. ..
T Consensus 373 LDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~H-ndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~D 449 (712)
T KOG0283|consen 373 LDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSH-NDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWND 449 (712)
T ss_pred eecccccCCeeEeccccccEEeecCCCcceeeEEec-CCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeehh
Confidence 455555666777766777777777754433333333 36899999999999999998777766554443322 221 22
Q ss_pred CC-CcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEE--Ee----cCCCCCCCceEEEeccC-CeEEEEeCCCCeE
Q psy952 129 IQ-DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI--LT----HEDDIAWPNALTLDYFT-ERLYWADAHLDYI 200 (573)
Q Consensus 129 ~~-~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l--~~----~~~~l~~P~glaiD~~~-~~LYw~D~~~~~I 200 (573)
+. -..++.+-|...+..+-.. .+........|.....- +. ....-....||...+.. .+|.|+. ...+|
T Consensus 450 l~~lITAvcy~PdGk~avIGt~--~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS-nDSrI 526 (712)
T KOG0283|consen 450 LRDLITAVCYSPDGKGAVIGTF--NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS-NDSRI 526 (712)
T ss_pred hhhhheeEEeccCCceEEEEEe--ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec-CCCce
Confidence 22 2556666664333222211 22222222222221110 00 00011134677666433 3576664 45677
Q ss_pred EEEeC
Q psy952 201 ASVDL 205 (573)
Q Consensus 201 ~~~~~ 205 (573)
..++.
T Consensus 527 RI~d~ 531 (712)
T KOG0283|consen 527 RIYDG 531 (712)
T ss_pred EEEec
Confidence 77765
No 347
>KOG0918|consensus
Probab=33.44 E-value=5.8e+02 Score=26.64 Aligned_cols=30 Identities=7% Similarity=0.173 Sum_probs=24.1
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGS 76 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g 76 (573)
+..+-+...+..||++.+..+-|+++++.-
T Consensus 314 ITDilISmDDRFLYvs~WLHGDirQYdIsD 343 (476)
T KOG0918|consen 314 ITDILISLDDRFLYVSNWLHGDIRQYDISD 343 (476)
T ss_pred hheeEEeecCcEEEEEeeeecceeeeccCC
Confidence 345556666899999999999999999853
No 348
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=33.43 E-value=1.5e+02 Score=20.15 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=19.1
Q ss_pred ceEEEeCCCc---eEEEEecCCcCeEEEEecc
Q psy952 133 RGITLHPGIG---YVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 133 ~~Iavdp~~g---~LYwtd~~~~~~I~r~~ld 161 (573)
|.+.+.|..+ .|.||+ ..++|..+++-
T Consensus 4 R~~kFsP~~~~~DLL~~~E--~~g~vhi~D~R 33 (43)
T PF10313_consen 4 RCCKFSPEPGGNDLLAWAE--HQGRVHIVDTR 33 (43)
T ss_pred EEEEeCCCCCcccEEEEEc--cCCeEEEEEcc
Confidence 5667776555 899998 35677777765
No 349
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=33.21 E-value=25 Score=33.54 Aligned_cols=28 Identities=11% Similarity=0.020 Sum_probs=23.8
Q ss_pred CcccccccccccCccceee-eccceeecCCCC
Q psy952 274 GTTRHAWLTAHRGSTTVAD-MIRSVYLGSGNK 304 (573)
Q Consensus 274 ~~Cs~lCl~~~~~~~~~~C-Cp~~~~l~~d~~ 304 (573)
+.|.|.|...+ ++|.| |+.||.+..+++
T Consensus 195 ~~c~~~C~~~~---g~~~c~c~~g~~~~~~~~ 223 (224)
T cd01475 195 HVCQQVCISTP---GSYLCACTEGYALLEDNK 223 (224)
T ss_pred CCccceEEcCC---CCEEeECCCCccCCCCCC
Confidence 67889999877 67999 999999987765
No 350
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.10 E-value=5.1e+02 Score=25.86 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=73.1
Q ss_pred EEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCC-cEEEEeCCCCeEEEEEcCCCceeEec
Q psy952 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGR-KLYWLDRHSKQLDVAELDGTNRKTLK 126 (573)
Q Consensus 48 ~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~-~LY~td~~~~~I~~~~ldg~~~~~l~ 126 (573)
..-+++..++..+.+-. +..|.-...+... .+-.||++++... .|+|+-.-..-.+++++++....+++
T Consensus 38 fasaf~~~dgs~g~a~~--------~eaGk~v~~~~lp--aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~ 107 (366)
T COG3490 38 FASAFDARDGSFGAATL--------SEAGKIVFATALP--ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTL 107 (366)
T ss_pred heeeeeccCCceeEEEE--------ccCCceeeeeecc--cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEE
Confidence 34466666666665432 2233222222111 3566777776554 45666544445677888876655444
Q ss_pred -c-CCCCcc-eEEEeCCCceEEEEecCC---cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952 127 -T-AIQDPR-GITLHPGIGYVYFSSWNL---QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 127 -~-~~~~P~-~Iavdp~~g~LYwtd~~~---~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
+ .-.+-. .=+++|...+||-|+... .+.|...+.+-...+ +...++--..|.-+++-.++..|-++..
T Consensus 108 ~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqr-vgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 108 VSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQR-VGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccce-ecccccCCcCcceeEEecCCcEEEEeCC
Confidence 2 111111 124677788999997532 345666655522222 2111333446888888877777777654
No 351
>KOG1645|consensus
Probab=32.98 E-value=5.9e+02 Score=26.57 Aligned_cols=56 Identities=9% Similarity=0.046 Sum_probs=40.9
Q ss_pred EEecccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC
Q psy952 21 FSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76 (573)
Q Consensus 21 ~s~~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g 76 (573)
.+..+.|..+++..............+....||..+....++...+|.|+.+++..
T Consensus 212 asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 212 ASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred eccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 34467888888887654443334466888889888877777777888999999864
No 352
>KOG0316|consensus
Probab=32.59 E-value=4.6e+02 Score=25.28 Aligned_cols=198 Identities=12% Similarity=0.061 Sum_probs=85.3
Q ss_pred CCcceEEEEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC-CC
Q psy952 43 DLLNVVAMDFHYKENRFYFADVAAKTIYRSRVG-STEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD-GT 120 (573)
Q Consensus 43 ~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld-g~ 120 (573)
..+.+.++-|+..+++.. +--....|..+++- |.-..+....+ ..+..+|+-.. +.=|-+-.+...|++.+.. |.
T Consensus 16 ~qgaV~avryN~dGnY~l-tcGsdrtvrLWNp~rg~liktYsghG-~EVlD~~~s~D-nskf~s~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCL-TCGSDRTVRLWNPLRGALIKTYSGHG-HEVLDAALSSD-NSKFASCGGDKAVQVWDVNTGK 92 (307)
T ss_pred cccceEEEEEccCCCEEE-EcCCCceEEeecccccceeeeecCCC-ceeeecccccc-ccccccCCCCceEEEEEcccCe
Confidence 334466777775444332 32233445555542 22222222222 23333333221 1222333445567777765 44
Q ss_pred ceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeE
Q psy952 121 NRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 200 (573)
Q Consensus 121 ~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I 200 (573)
..+.+...+...+.+++......+ ++- +-..+|...+-.-...+.+....+.... -+.|| ..+...++-+..+++
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv-~Sg-sfD~s~r~wDCRS~s~ePiQildea~D~--V~Si~-v~~heIvaGS~DGtv 167 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVV-ASG-SFDSSVRLWDCRSRSFEPIQILDEAKDG--VSSID-VAEHEIVAGSVDGTV 167 (307)
T ss_pred eeeecccccceeeEEEecCcceEE-Eec-cccceeEEEEcccCCCCccchhhhhcCc--eeEEE-ecccEEEeeccCCcE
Confidence 445555677778888887643333 222 1122222222211111111100121211 23344 234455555555555
Q ss_pred EEEeCCCCcEEEEEeCCccceeE-EEee--eCCeEEEecCCCCceEEEeccCCcce
Q psy952 201 ASVDLDGKHKHIVISGQKVPHVF-ALTL--FEDHIYWTDWNTKSINRADKFNGRDY 253 (573)
Q Consensus 201 ~~~~~dG~~~~~l~~~~~~~~p~-~ia~--~~~~lywtd~~~~~I~~~~~~~g~~~ 253 (573)
..+++.-... ...- +.+|. .+.+ +++-+..+ .....|.-++|.+|+..
T Consensus 168 RtydiR~G~l---~sDy-~g~pit~vs~s~d~nc~La~-~l~stlrLlDk~tGklL 218 (307)
T KOG0316|consen 168 RTYDIRKGTL---SSDY-FGHPITSVSFSKDGNCSLAS-SLDSTLRLLDKETGKLL 218 (307)
T ss_pred EEEEeeccee---ehhh-cCCcceeEEecCCCCEEEEe-eccceeeecccchhHHH
Confidence 5555532211 1111 45663 3434 23334333 34456777787777643
No 353
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=32.05 E-value=4.6e+02 Score=25.11 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=0.0
Q ss_pred EEEEcCCCEEEEEECCCCeEEEE---EcCCC----cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC----
Q psy952 50 MDFHYKENRFYFADVAAKTIYRS---RVGST----EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD---- 118 (573)
Q Consensus 50 v~~d~~~~~ly~~d~~~~~I~~~---~~~g~----~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld---- 118 (573)
|++.+ +++||.+... .+++. ...+. ..+.|...+...=..|++|. ++.||-... .++|++....
T Consensus 39 i~~~P-~g~lY~I~~~--~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~~i~~d~-~G~LYaV~~-~G~lyR~~~~~~~~ 113 (229)
T PF14517_consen 39 IAAGP-NGRLYAIRND--GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFKFIFFDP-TGVLYAVTP-DGKLYRHPRPTNGS 113 (229)
T ss_dssp EEE-T-TS-EEEEETT--EEEEES---STT--HHHH-EEEE-S-GGG-SEEEE-T-TS-EEEEET-T-EEEEES---STT
T ss_pred EEEcC-CceEEEEECC--ceEEecCCccCcccccccCcccccCcccceeEEEecC-CccEEEecc-ccceeeccCCCccC
Q ss_pred -----CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEE-eccCCC------cEEEEecCCCCCCCceEEEecc
Q psy952 119 -----GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKI-GMDGSN------FTRILTHEDDIAWPNALTLDYF 186 (573)
Q Consensus 119 -----g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~-~ldG~~------~~~l~~~~~~l~~P~glaiD~~ 186 (573)
+...++-..+......|-.++ +|.||..+ ....+++. ..++.. ..++. ...-..+.-|..- .
T Consensus 114 ~~W~~~~~~~iG~~GW~~f~~vfa~~-~GvLY~i~--~dg~~~~~~~p~~~~~~W~~~s~~v~--~~gw~~~~~i~~~-~ 187 (229)
T PF14517_consen 114 DNWIGGSGKKIGGTGWNDFDAVFAGP-NGVLYAIT--PDGRLYRRYRPDGGSDRWLSGSGLVG--GGGWDSFHFIFFS-P 187 (229)
T ss_dssp --HHH-HSEEEE-SSGGGEEEEEE-T-TS-EEEEE--TTE-EEEE---SSTT--HHHH-EEEE--SSSGGGEEEEEE--T
T ss_pred cchhhccceecccCCCccceEEEeCC-CccEEEEc--CCCceEEeCCCCCCCCccccccceec--cCCcccceEEeeC-C
Q ss_pred CCeEEEEeCCCCeEEE
Q psy952 187 TERLYWADAHLDYIAS 202 (573)
Q Consensus 187 ~~~LYw~D~~~~~I~~ 202 (573)
++.||++ ...+.|++
T Consensus 188 ~g~L~~V-~~~G~lyr 202 (229)
T PF14517_consen 188 DGNLWAV-KSNGKLYR 202 (229)
T ss_dssp TS-EEEE--ETTEEEE
T ss_pred CCcEEEE-ecCCEEec
No 354
>KOG3621|consensus
Probab=32.01 E-value=2.3e+02 Score=31.61 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=34.3
Q ss_pred CceEEEeccCCeEEEEeCCCCeEEEEeCCC-----CcEEEEEeCCccceeEEEeeeCCeEEEecCC
Q psy952 178 PNALTLDYFTERLYWADAHLDYIASVDLDG-----KHKHIVISGQKVPHVFALTLFEDHIYWTDWN 238 (573)
Q Consensus 178 P~glaiD~~~~~LYw~D~~~~~I~~~~~dG-----~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~ 238 (573)
..+|+.+....+||..|. .|+|....++- ...+.|... -.-..-|.+++.+|.++...
T Consensus 127 VTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s~~~~~~~~q~il~~--ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 127 VTALEWSKNGMKLYSGDS-QGKVVLTELDSRQAFLSKSQEILSE--DSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred EEEEEecccccEEeecCC-CceEEEEEechhhhhccccceeecc--CcceEEeecccceehHhhhh
Confidence 357888888899999885 56777777765 112222221 11234455566666666543
No 355
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=31.54 E-value=72 Score=20.76 Aligned_cols=24 Identities=8% Similarity=0.050 Sum_probs=16.4
Q ss_pred EEeeeCCeEEEecCCCCceEEEecc
Q psy952 224 ALTLFEDHIYWTDWNTKSINRADKF 248 (573)
Q Consensus 224 ~ia~~~~~lywtd~~~~~I~~~~~~ 248 (573)
++++.++.||+... .+.|+.++..
T Consensus 16 ~~~v~~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVAGGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp --EECTSEEEEE-T-TSEEEEEETT
T ss_pred CCEEECCEEEEEcC-CCEEEEEeCC
Confidence 44778999999986 5778877753
No 356
>KOG1334|consensus
Probab=31.47 E-value=5.3e+02 Score=27.55 Aligned_cols=193 Identities=15% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEECCCCeEEEEEcCCC---cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec----cCCC---
Q psy952 61 FADVAAKTIYRSRVGST---EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK----TAIQ--- 130 (573)
Q Consensus 61 ~~d~~~~~I~~~~~~g~---~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~----~~~~--- 130 (573)
+++...+++.+..+.-+ .....+...-+.+.-||+++-.-+-|.+..+.+.+.-++|.......++ ....
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v 282 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERV 282 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccce
Q ss_pred CcceEEEeCCCceEEEEecCC----cCeEEEEeccCCCc-------EEEEecCCCCCCCceEEEeccCCeEEEEeCCCCe
Q psy952 131 DPRGITLHPGIGYVYFSSWNL----QAYIGKIGMDGSNF-------TRILTHEDDIAWPNALTLDYFTERLYWADAHLDY 199 (573)
Q Consensus 131 ~P~~Iavdp~~g~LYwtd~~~----~~~I~r~~ldG~~~-------~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~ 199 (573)
.-..||++|.+-+.|-+.... ...+.++...+.++ ..++ ........|+++.+..+.|..+ ...--
T Consensus 283 ~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~--~d~~v~ITgl~Ysh~~sElLaS-YnDe~ 359 (559)
T KOG1334|consen 283 GLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLV--EDDPVNITGLVYSHDGSELLAS-YNDED 359 (559)
T ss_pred eeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcccc--ccCcccceeEEecCCccceeee-ecccc
Q ss_pred EEEEeCC---C----------CcEEEEEeCCc-cceeEEEeeeC--CeEEEecCCCCceEEEeccCCcceEEE
Q psy952 200 IASVDLD---G----------KHKHIVISGQK-VPHVFALTLFE--DHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 200 I~~~~~d---G----------~~~~~l~~~~~-~~~p~~ia~~~--~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
|+.++.+ | ...+.++.+.+ -....|+-+|+ ....++-..=+.|+.-+|.+++-++.+
T Consensus 360 IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~M 432 (559)
T KOG1334|consen 360 IYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFM 432 (559)
T ss_pred eEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHh
No 357
>PHA02790 Kelch-like protein; Provisional
Probab=30.22 E-value=7.2e+02 Score=26.72 Aligned_cols=126 Identities=11% Similarity=0.121 Sum_probs=65.3
Q ss_pred CCCEEEEEECC--CCeEEEEEcCCCcceEEEcCCCCCcc-eeEEeecCCcEEEEeCC---CCeEEEEEcCCCceeEeccC
Q psy952 55 KENRFYFADVA--AKTIYRSRVGSTEKERVIRHDSHGLE-GLAVDWVGRKLYWLDRH---SKQLDVAELDGTNRKTLKTA 128 (573)
Q Consensus 55 ~~~~ly~~d~~--~~~I~~~~~~g~~~~~i~~~~~~~p~-glavD~~~~~LY~td~~---~~~I~~~~ldg~~~~~l~~~ 128 (573)
.+++||++-.. ...+.+++........+ ..+..|. +.++=..+++||+.-.. ...++++++....-..+ ..
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~--~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~-~~ 393 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNM--PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG-PS 393 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEEC--CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC-CC
Confidence 47899998643 24577777654333322 2333332 33333467999998532 24577777765433322 22
Q ss_pred CCCcc---eEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCc---eEEEeccCCeEEEEeC
Q psy952 129 IQDPR---GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN---ALTLDYFTERLYWADA 195 (573)
Q Consensus 129 ~~~P~---~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~---glaiD~~~~~LYw~D~ 195 (573)
+..|+ ++++ .++.||+.- + ..++.+.....= ..+ ..+..|. |+++ .+++||+.-.
T Consensus 394 m~~~r~~~~~~~--~~~~IYv~G-G---~~e~ydp~~~~W-~~~---~~m~~~r~~~~~~v--~~~~IYviGG 454 (480)
T PHA02790 394 TYYPHYKSCALV--FGRRLFLVG-R---NAEFYCESSNTW-TLI---DDPIYPRDNPELII--VDNKLLLIGG 454 (480)
T ss_pred CCCccccceEEE--ECCEEEEEC-C---ceEEecCCCCcE-eEc---CCCCCCccccEEEE--ECCEEEEECC
Confidence 33332 2222 368999875 2 345555542211 122 3333332 4444 3789998753
No 358
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=29.51 E-value=4.9e+02 Score=24.64 Aligned_cols=150 Identities=10% Similarity=0.042 Sum_probs=74.9
Q ss_pred CcceeEEeecC-CcEEEEeCCCCeEEEEEcCCCceeEec--cCCCCcceEEEeCCCceEEE----------------Eec
Q psy952 89 GLEGLAVDWVG-RKLYWLDRHSKQLDVAELDGTNRKTLK--TAIQDPRGITLHPGIGYVYF----------------SSW 149 (573)
Q Consensus 89 ~p~glavD~~~-~~LY~td~~~~~I~~~~ldg~~~~~l~--~~~~~P~~Iavdp~~g~LYw----------------td~ 149 (573)
.|..+.- .+ +.||++ .....|++.++.....+.+. +.+.....|+....+.+|-- .+|
T Consensus 19 EP~~~c~--~g~d~Lfva-~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 19 EPTAVCC--GGPDALFVA-ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred Ccceeec--cCCceEEEE-cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence 4544433 24 678887 56678999998844433332 23333334443333322221 233
Q ss_pred CC---cCeEEEEeccC-----------CCcEEEEecCCCC-CCCceEEEeccCCeEEEEeCCCCeEEEEeCCCC---cEE
Q psy952 150 NL---QAYIGKIGMDG-----------SNFTRILTHEDDI-AWPNALTLDYFTERLYWADAHLDYIASVDLDGK---HKH 211 (573)
Q Consensus 150 ~~---~~~I~r~~ldG-----------~~~~~l~~~~~~l-~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~---~~~ 211 (573)
.. ...-.|+.|-| .....++ +-.+ ..|.-|+--+..|+|.++-.+.=.|++....-. ...
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleii--ElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~ 173 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEII--ELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFS 173 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEE--EecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEeccccc
Confidence 21 12233444445 1112233 1222 367888888899999988654444444332211 111
Q ss_pred EE-------EeCCccceeEEEeeeCCeEEEecCCCCceEE
Q psy952 212 IV-------ISGQKVPHVFALTLFEDHIYWTDWNTKSINR 244 (573)
Q Consensus 212 ~l-------~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~ 244 (573)
.+ .... .-.|..|++-+++|-+.....-.|++
T Consensus 174 ~lDFe~~l~~~~~-~~~p~~v~ic~~yiA~~s~~ev~Vlk 212 (215)
T PF14761_consen 174 FLDFERSLIDHID-NFKPTQVAICEGYIAVMSDLEVLVLK 212 (215)
T ss_pred EEechhhhhheec-CceEEEEEEEeeEEEEecCCEEEEEE
Confidence 11 1111 23588899999988776544333433
No 359
>KOG0643|consensus
Probab=29.11 E-value=5.7e+02 Score=25.19 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=89.0
Q ss_pred EEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCc-EEEEeCC
Q psy952 30 MSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK-LYWLDRH 108 (573)
Q Consensus 30 i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~-LY~td~~ 108 (573)
+.++|..+-...-.-+.+..+++|+.... .++....+.+...+...+.....+..+ ..+..+.++.-++. ||.+|..
T Consensus 38 ~s~nGerlGty~GHtGavW~~Did~~s~~-liTGSAD~t~kLWDv~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 38 YSLNGERLGTYDGHTGAVWCCDIDWDSKH-LITGSADQTAKLWDVETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred EecCCceeeeecCCCceEEEEEecCCcce-eeeccccceeEEEEcCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhh
Confidence 34455443322223345677888865544 455566677777777655443334333 35677778754443 3445532
Q ss_pred ---CCeEEEEEcC-------CCc-eeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEec-CCCCC
Q psy952 109 ---SKQLDVAELD-------GTN-RKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH-EDDIA 176 (573)
Q Consensus 109 ---~~~I~~~~ld-------g~~-~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~-~~~l~ 176 (573)
...|.++++. +.. ..+|...-..+.....+|...+|+.-. ..+.|.+.++.-. +.++.. ...-.
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--e~G~is~~da~~g--~~~v~s~~~h~~ 191 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH--EDGSISIYDARTG--KELVDSDEEHSS 191 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec--CCCcEEEEEcccC--ceeeechhhhcc
Confidence 3467777664 222 223334445677777778777666544 3566776665422 222210 11112
Q ss_pred CCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 177 WPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 177 ~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
..+.|-+. .....|++-+....-..++...
T Consensus 192 ~Ind~q~s-~d~T~FiT~s~Dttakl~D~~t 221 (327)
T KOG0643|consen 192 KINDLQFS-RDRTYFITGSKDTTAKLVDVRT 221 (327)
T ss_pred cccccccc-CCcceEEecccCccceeeeccc
Confidence 34556655 3556666665554444445443
No 360
>KOG4260|consensus
Probab=27.85 E-value=39 Score=32.72 Aligned_cols=32 Identities=41% Similarity=0.857 Sum_probs=25.6
Q ss_pred CCccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952 345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 345 ~~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
++++|.. ....|+- .|.|+.++|.|.+..+|+
T Consensus 235 DvnEC~~-ep~~c~~~qfCvNteGSf~C~dk~Gy~ 268 (350)
T KOG4260|consen 235 DVNECQN-EPAPCKAHQFCVNTEGSFKCEDKEGYK 268 (350)
T ss_pred cHHHHhc-CCCCCChhheeecCCCceEeccccccc
Confidence 5889977 5677876 799999999998766664
No 361
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.65 E-value=1.1e+02 Score=19.76 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=15.1
Q ss_pred CeEEEecCCCCceEEEeccCCcce
Q psy952 230 DHIYWTDWNTKSINRADKFNGRDY 253 (573)
Q Consensus 230 ~~lywtd~~~~~I~~~~~~~g~~~ 253 (573)
+.||+. ...+.|+.+|..+|+.+
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~~~ 23 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGKVL 23 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTSEE
T ss_pred CEEEEe-CCCCEEEEEECCCCCEE
Confidence 356666 56677777777777643
No 362
>PLN02153 epithiospecifier protein
Probab=26.25 E-value=6.9e+02 Score=25.23 Aligned_cols=178 Identities=11% Similarity=0.068 Sum_probs=84.6
Q ss_pred CCEEEEEECC-------CCeEEEEEcCCCcceEEEcCC-CCCc--ceeEEeecCCcEEEEeCC-----CCeEEEEEcCCC
Q psy952 56 ENRFYFADVA-------AKTIYRSRVGSTEKERVIRHD-SHGL--EGLAVDWVGRKLYWLDRH-----SKQLDVAELDGT 120 (573)
Q Consensus 56 ~~~ly~~d~~-------~~~I~~~~~~g~~~~~i~~~~-~~~p--~glavD~~~~~LY~td~~-----~~~I~~~~ldg~ 120 (573)
+++||+.--. ...++++++.......+...+ ...+ .+.++-..+++||+.-.. ...++++++...
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence 5688886322 135788887765444332211 1121 245555568899987431 246788887654
Q ss_pred ceeEecc--C--CCCcc---eEEEeCCCceEEEEecCCc----------CeEEEEeccCCCcEEEEecCCC-CCCCc-eE
Q psy952 121 NRKTLKT--A--IQDPR---GITLHPGIGYVYFSSWNLQ----------AYIGKIGMDGSNFTRILTHEDD-IAWPN-AL 181 (573)
Q Consensus 121 ~~~~l~~--~--~~~P~---~Iavdp~~g~LYwtd~~~~----------~~I~r~~ldG~~~~~l~~~~~~-l~~P~-gl 181 (573)
.-+.+.. . ...|+ ++++ .++.||+.-.... ..|++.++.-..=+.+. ... ...|. +.
T Consensus 112 ~W~~~~~~~~~~~p~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~--~~~~~~~~r~~~ 187 (341)
T PLN02153 112 EWTFLTKLDEEGGPEARTFHSMAS--DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLP--DPGENFEKRGGA 187 (341)
T ss_pred EEEEeccCCCCCCCCCceeeEEEE--ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCC--CCCCCCCCCCcc
Confidence 3333321 0 11222 2333 3578888742110 13555554322111111 010 11121 22
Q ss_pred EEeccCCeEEEEeC-------------CCCeEEEEeCCCCcEEEEEeCCcccee---EEEeeeCCeEEEecC
Q psy952 182 TLDYFTERLYWADA-------------HLDYIASVDLDGKHKHIVISGQKVPHV---FALTLFEDHIYWTDW 237 (573)
Q Consensus 182 aiD~~~~~LYw~D~-------------~~~~I~~~~~dG~~~~~l~~~~~~~~p---~~ia~~~~~lywtd~ 237 (573)
++-..+++||+.-. ..+.|+.+++....=+.+......+.| .++++.+++||+.-.
T Consensus 188 ~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG 259 (341)
T PLN02153 188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGG 259 (341)
T ss_pred eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECc
Confidence 22224788988521 134677777765433333221112322 456677888888744
No 363
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.78 E-value=9.2e+02 Score=26.54 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=62.4
Q ss_pred ceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCC-CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDS-HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 46 ~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~-~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
.+.++.+|. ++.||+ -...+ +++++......-.+....+ ..+..|+.| ..+.|++.-. .-|++....|.....
T Consensus 166 ~V~aLv~D~-~g~lWv-gT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d-~qg~LWVGTd--qGv~~~e~~G~~~sn 239 (671)
T COG3292 166 PVVALVFDA-NGRLWV-GTPDG-LSYFDAGRGKALQLASPPLDKAINALIAD-VQGRLWVGTD--QGVYLQEAEGWRASN 239 (671)
T ss_pred cceeeeeec-cCcEEE-ecCCc-ceEEccccceEEEcCCCcchhhHHHHHHH-hcCcEEEEec--cceEEEchhhccccc
Confidence 356888884 444444 33333 5555543222222222333 455566677 4556665432 236666666622111
Q ss_pred eccCC--CCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCc-EEEEecCCCCCCCceEEEeccCCeEEEEeC
Q psy952 125 LKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF-TRILTHEDDIAWPNALTLDYFTERLYWADA 195 (573)
Q Consensus 125 l~~~~--~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~-~~l~~~~~~l~~P~glaiD~~~~~LYw~D~ 195 (573)
....+ .....++-|. .|.|++.. ...+.|..+.-... ..+..........++|..| .++.|++.+.
T Consensus 240 ~~~~lp~~~I~ll~qD~-qG~lWiGT---enGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D-~dGsLWv~t~ 308 (671)
T COG3292 240 WGPMLPSGNILLLVQDA-QGELWIGT---ENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLD-TDGSLWVGTY 308 (671)
T ss_pred cCCCCcchheeeeeccc-CCCEEEee---cccceeEecCCCCccccccccCCccccccceeec-cCCCEeeecc
Confidence 11111 1233444454 55665543 12233333221111 1111001123334688888 5677877653
No 364
>KOG1408|consensus
Probab=25.73 E-value=6.3e+02 Score=28.48 Aligned_cols=73 Identities=10% Similarity=0.003 Sum_probs=43.5
Q ss_pred CCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc
Q psy952 87 SHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 87 ~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld 161 (573)
+..-.|||.++..+.+-+- ..-.|..++.+.-...-|+ +.-.....+|+.+..+|+---+.|..+.|.+-.+.
T Consensus 37 v~~~~gLa~~p~Sgl~aYp--AGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la 110 (1080)
T KOG1408|consen 37 VKNANGLASVPCSGLCAYP--AGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLA 110 (1080)
T ss_pred eecCCcccccccccceeec--cCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeec
Confidence 3567788888888766433 1235566777654444444 33344678999996655544444555555555554
No 365
>KOG1539|consensus
Probab=25.67 E-value=1.1e+03 Score=27.23 Aligned_cols=90 Identities=18% Similarity=0.067 Sum_probs=46.9
Q ss_pred eEEEeccCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccceeEEEee-eCCeEEEecCCCCc--eEEEeccCCcceEEE
Q psy952 180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTL-FEDHIYWTDWNTKS--INRADKFNGRDYRVL 256 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~p~~ia~-~~~~lywtd~~~~~--I~~~~~~~g~~~~~l 256 (573)
.|++-.++.-+..+-...+.+...|+++.....+..+.....+.++.+ .+.-|.+|.+..++ ++.++..+|..+.+-
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence 344443344444444455667777777776666555332344555555 45567777665554 455554444433221
Q ss_pred c-c-cCCCceeeeee
Q psy952 257 R-N-TTHRPYDIHVY 269 (573)
Q Consensus 257 ~-~-~~~~p~~i~v~ 269 (573)
. . ....|.-|+.|
T Consensus 329 ~R~GHs~Pp~~irfy 343 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFY 343 (910)
T ss_pred eccCCCCCchheeee
Confidence 1 1 23455556555
No 366
>KOG1538|consensus
Probab=25.66 E-value=9.8e+02 Score=26.81 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=36.2
Q ss_pred eeeCCCCCCEEEEEecccEEEEEcC-CCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEE
Q psy952 9 CKRRDSIKPWLIFSNKYYVRNMSLD-ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIY 70 (573)
Q Consensus 9 C~~~~~~~~~l~~s~~~~I~~i~l~-g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~ 70 (573)
|-++++. -|+++..++++.++.+ |+....+...-..+.-|||. .+++.|-+......+.
T Consensus 19 afkPDGs--qL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys-~dGkrFASG~aDK~VI 78 (1081)
T KOG1538|consen 19 AFKPDGT--QLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYA-KDGKRFASGSADKSVI 78 (1081)
T ss_pred EECCCCc--eEEEecCCEEEEEeCCCcccccccccccceEEEEEEc-cCCceeccCCCceeEE
Confidence 4444443 4566777788889885 55444443333446788887 5777787765555433
No 367
>KOG0274|consensus
Probab=25.64 E-value=9.2e+02 Score=26.48 Aligned_cols=218 Identities=14% Similarity=0.067 Sum_probs=105.4
Q ss_pred cccEEEEEcCCCceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEE
Q psy952 24 KYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLY 103 (573)
Q Consensus 24 ~~~I~~i~l~g~~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY 103 (573)
...++.-+.....-.-++.+... .+..++ ..+.+..+-.....|...++.......++......+..|.++ +.+.
T Consensus 270 D~t~rvWd~~sg~C~~~l~gh~s-tv~~~~-~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---~~~l 344 (537)
T KOG0274|consen 270 DKTERVWDCSTGECTHSLQGHTS-SVRCLT-IDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---EPLL 344 (537)
T ss_pred CCcEEeEecCCCcEEEEecCCCc-eEEEEE-ccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---CCEE
Confidence 45566666544333222222221 122222 233444443455677777776443333333233566677765 5555
Q ss_pred EEeCCCCeEEEEEcC-CCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCC-CcEEEEecCCCCCCCceE
Q psy952 104 WLDRHSKQLDVAELD-GTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS-NFTRILTHEDDIAWPNAL 181 (573)
Q Consensus 104 ~td~~~~~I~~~~ld-g~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~-~~~~l~~~~~~l~~P~gl 181 (573)
++-+..+.|.+-+.. +...++|........+|+++.. ..+|=.. ....|..-++.+. ...... ........+|
T Consensus 345 vsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs--~D~~IkvWdl~~~~~c~~tl--~~h~~~v~~l 419 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS--LDTTIKVWDLRTKRKCIHTL--QGHTSLVSSL 419 (537)
T ss_pred EEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee--eccceEeecCCchhhhhhhh--cCCccccccc
Confidence 665566678777765 3444444455556888888874 3343222 2456777777665 222111 1111122344
Q ss_pred EEeccCCeEEEEeCCCCeEEEEeCC-CCcEEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEeccCCcceEEE
Q psy952 182 TLDYFTERLYWADAHLDYIASVDLD-GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVL 256 (573)
Q Consensus 182 aiD~~~~~LYw~D~~~~~I~~~~~d-G~~~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~~~~g~~~~~l 256 (573)
.+ .+.+++.....+.|..-+.. |..++++.... ..+...+++. ...+++-...+++..-+..+|+..+.+
T Consensus 420 ~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~-~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 420 LL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRH-VGGVSALALG-KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cc---ccceeEeccccccEEEeecccCceeeeeccCC-cccEEEeecC-cceEEEEecCCeeEEEecccCchhhhh
Confidence 43 24555555556666655544 33344433211 2233333332 234444444455555566666655443
No 368
>KOG1445|consensus
Probab=25.57 E-value=9.6e+02 Score=26.68 Aligned_cols=172 Identities=12% Similarity=0.108 Sum_probs=87.3
Q ss_pred cEEEEEcCCCce------eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC-cceEEEcCCCCCcceeEEeec
Q psy952 26 YVRNMSLDATQY------SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST-EKERVIRHDSHGLEGLAVDWV 98 (573)
Q Consensus 26 ~I~~i~l~g~~~------~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~-~~~~i~~~~~~~p~glavD~~ 98 (573)
.|+|+...|... .++......+..|-|++..-.|..+-..+-.|...++... ....+. .....+.+||..+.
T Consensus 653 ~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~-gHtdqIf~~AWSpd 731 (1012)
T KOG1445|consen 653 NLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLV-GHTDQIFGIAWSPD 731 (1012)
T ss_pred EEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheec-cCcCceeEEEECCC
Confidence 455666655321 1222345567788888877666666555667887887543 333333 23467888888776
Q ss_pred CCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCC-cEEEEecCCCCC-
Q psy952 99 GRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN-FTRILTHEDDIA- 176 (573)
Q Consensus 99 ~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~-~~~l~~~~~~l~- 176 (573)
++.|- |--..++|.|.+.......+ . ....|.| -...+|.|+-- ...|....+|-+. |++.+...+.+.
T Consensus 732 Gr~~A-tVcKDg~~rVy~Prs~e~pv-~-Eg~gpvg----tRgARi~wacd--gr~viv~Gfdk~SeRQv~~Y~Aq~l~~ 802 (1012)
T KOG1445|consen 732 GRRIA-TVCKDGTLRVYEPRSREQPV-Y-EGKGPVG----TRGARILWACD--GRIVIVVGFDKSSERQVQMYDAQTLDL 802 (1012)
T ss_pred Cccee-eeecCceEEEeCCCCCCCcc-c-cCCCCcc----CcceeEEEEec--CcEEEEecccccchhhhhhhhhhhccC
Confidence 65553 33345778887765433221 1 1111222 11223444431 2234444444332 222111011111
Q ss_pred ------------CCceEEEeccCCeEEEEeCCCCeEEEEeCCC
Q psy952 177 ------------WPNALTLDYFTERLYWADAHLDYIASVDLDG 207 (573)
Q Consensus 177 ------------~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG 207 (573)
.|---.+|++.+.||++--+...|+.+.+--
T Consensus 803 ~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~ 845 (1012)
T KOG1445|consen 803 RPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIY 845 (1012)
T ss_pred CcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecC
Confidence 1111235777888888877777777766543
No 369
>KOG0640|consensus
Probab=25.52 E-value=7e+02 Score=25.08 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=60.2
Q ss_pred CceeeCCCCCCEEEEEe--cccEEEEEcCCCce---eecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceE
Q psy952 7 STCKRRDSIKPWLIFSN--KYYVRNMSLDATQY---SLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKER 81 (573)
Q Consensus 7 ~~C~~~~~~~~~l~~s~--~~~I~~i~l~g~~~---~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 81 (573)
.++.... |..-||.+. .+.|+-++...... ..+++....+..|.|++.+..|.+. .....+..++++... -
T Consensus 175 vn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvg-TdHp~~rlYdv~T~Q--c 250 (430)
T KOG0640|consen 175 VNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVG-TDHPTLRLYDVNTYQ--C 250 (430)
T ss_pred ccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEe-cCCCceeEEecccee--E
Confidence 3444332 333444443 35677777654322 2345566678899999977777664 344456666665422 1
Q ss_pred EEcCC-----CCCcceeEEeecCCcEEEEeCCCCeEEEEE
Q psy952 82 VIRHD-----SHGLEGLAVDWVGRKLYWLDRHSKQLDVAE 116 (573)
Q Consensus 82 i~~~~-----~~~p~glavD~~~~~LY~td~~~~~I~~~~ 116 (573)
++... -..+..+-+. .+++||+|-+..|.|...+
T Consensus 251 fvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 251 FVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWD 289 (430)
T ss_pred eeecCcccccccceeEEEec-CCccEEEEeccCCcEEeec
Confidence 22211 1244555565 4789999999888887644
No 370
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=25.13 E-value=4.5e+02 Score=28.90 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=44.8
Q ss_pred ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCC---cceEEEcCCCCCcceeEEeecCCcEEE
Q psy952 41 HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGST---EKERVIRHDSHGLEGLAVDWVGRKLYW 104 (573)
Q Consensus 41 ~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~---~~~~i~~~~~~~p~glavD~~~~~LY~ 104 (573)
++++--|.=||||++.+.|-++...-+.|..+.+..+ +.+.|--..-.+|.||.|= +++|..
T Consensus 335 IPGILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFl--tdklLL 399 (671)
T PF15390_consen 335 IPGILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFL--TDKLLL 399 (671)
T ss_pred cccccccceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEc--cCCeEE
Confidence 4455567789999999999999988888888887543 3344444445799999984 444443
No 371
>KOG3881|consensus
Probab=24.75 E-value=8e+02 Score=25.45 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=64.2
Q ss_pred CcceEEEeCC-CceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC-ceEEEeccCCeEEEEeCCCCeEEEEeCCCC
Q psy952 131 DPRGITLHPG-IGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP-NALTLDYFTERLYWADAHLDYIASVDLDGK 208 (573)
Q Consensus 131 ~P~~Iavdp~-~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P-~glaiD~~~~~LYw~D~~~~~I~~~~~dG~ 208 (573)
++.+|.+-+. -.+-|.|-.. .+.+..++..-..|.+.- ..-+..| ..+++.+.+..||+++.. +.+..+|..+.
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~-~hqvR~YDt~~qRRPV~~--fd~~E~~is~~~l~p~gn~Iy~gn~~-g~l~~FD~r~~ 279 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITR-YHQVRLYDTRHQRRPVAQ--FDFLENPISSTGLTPSGNFIYTGNTK-GQLAKFDLRGG 279 (412)
T ss_pred eeccceecCCCCCceEEEEec-ceeEEEecCcccCcceeE--eccccCcceeeeecCCCcEEEEeccc-chhheecccCc
Confidence 3566666542 1344554422 334444444433333332 3334444 578889999999999864 44666666554
Q ss_pred cEEEE-EeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 209 HKHIV-ISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 209 ~~~~l-~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
..... +.+. ...+.+|..+...-|.+--+-.+..|+.
T Consensus 280 kl~g~~~kg~-tGsirsih~hp~~~~las~GLDRyvRIh 317 (412)
T KOG3881|consen 280 KLLGCGLKGI-TGSIRSIHCHPTHPVLASCGLDRYVRIH 317 (412)
T ss_pred eeeccccCCc-cCCcceEEEcCCCceEEeeccceeEEEe
Confidence 43322 2232 5678888888887777766777766664
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=24.16 E-value=8.5e+02 Score=25.57 Aligned_cols=107 Identities=11% Similarity=0.042 Sum_probs=58.7
Q ss_pred ecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcC
Q psy952 39 LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELD 118 (573)
Q Consensus 39 ~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ld 118 (573)
+.+...+.|+||.-|... .+-........|..++..|.....+.-.. +.+.+|.+.. ...|.+.. .+|.+.++++-
T Consensus 34 va~a~~gGpIAi~~d~~k-~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~-~e~LvvV~-~dG~v~vy~~~ 109 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESK-LVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTD-DEELVVVQ-SDGTVRVYDLF 109 (410)
T ss_pred EEEcCCCceEEEEecCcc-cccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECC-CCeEEEEE-cCCEEEEEeCC
Confidence 344566778888877522 22112222224777777776655554433 5666666654 33343333 46788888887
Q ss_pred CCceeEe---c--cCC---------CCcceEEEeCCCceEEEEec
Q psy952 119 GTNRKTL---K--TAI---------QDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 119 g~~~~~l---~--~~~---------~~P~~Iavdp~~g~LYwtd~ 149 (573)
|...-.+ + ..+ ..-.||+|--.++.+|....
T Consensus 110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n 154 (410)
T PF04841_consen 110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNN 154 (410)
T ss_pred CceeechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeC
Confidence 7761001 0 011 11267887777777777753
No 373
>KOG3567|consensus
Probab=23.71 E-value=2.4e+02 Score=29.83 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=35.9
Q ss_pred ceEEEeccCCeEEEEeCC-------------CCeEEEEeCCCCcE-EEEEeCCccceeEEEeeeCCeEEE-ecCCCCceE
Q psy952 179 NALTLDYFTERLYWADAH-------------LDYIASVDLDGKHK-HIVISGQKVPHVFALTLFEDHIYW-TDWNTKSIN 243 (573)
Q Consensus 179 ~glaiD~~~~~LYw~D~~-------------~~~I~~~~~dG~~~-~~l~~~~~~~~p~~ia~~~~~lyw-td~~~~~I~ 243 (573)
+.|+|-...+++|-+.+- ..+|.++++....+ +....+. +.-|-||.++.+..|| ||-.++.+.
T Consensus 413 ~~l~vfhr~g~vwd~~sfd~~f~~~~~~pi~~~~ilvi~~~n~~~l~~~g~~~-fylphgl~~dkdgf~~~tdvash~v~ 491 (501)
T KOG3567|consen 413 NNLVVFHRGGHVWDGNSFDSKFVYQQIGPIEEDTILVIDPNNAAVLQSSGKNL-FYLPHGLSIDKDGFYWVTDVASHQVF 491 (501)
T ss_pred cceEEEccCCceEeechhhhhhhhhcccccccceEEEEcCcchhhhhhccCCc-eecCCcceecCCCcEEeecccchhhh
Confidence 345555555555544331 24677777662211 1111122 6678899998766555 566666665
Q ss_pred EE
Q psy952 244 RA 245 (573)
Q Consensus 244 ~~ 245 (573)
..
T Consensus 492 k~ 493 (501)
T KOG3567|consen 492 KL 493 (501)
T ss_pred hc
Confidence 43
No 374
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=23.51 E-value=1.7e+02 Score=17.68 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=15.9
Q ss_pred eCCeEEEecCCCCceEEEeccCCcc
Q psy952 228 FEDHIYWTDWNTKSINRADKFNGRD 252 (573)
Q Consensus 228 ~~~~lywtd~~~~~I~~~~~~~g~~ 252 (573)
.++.||++.. .+.|+.++..+|+.
T Consensus 5 ~~~~v~~~~~-~g~l~a~d~~~G~~ 28 (33)
T smart00564 5 SDGTVYVGST-DGTLYALDAKTGEI 28 (33)
T ss_pred ECCEEEEEcC-CCEEEEEEcccCcE
Confidence 4556777753 47788887767654
No 375
>KOG2321|consensus
Probab=23.46 E-value=1e+03 Score=26.19 Aligned_cols=147 Identities=10% Similarity=0.104 Sum_probs=79.4
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEcCCCcce--EEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec
Q psy952 49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKE--RVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK 126 (573)
Q Consensus 49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~--~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~ 126 (573)
.|-+.+.+++|+-+..-..+|..+++...... .-+...+-...=|.=|| +..++.-. ...|+....-|.+-++-+
T Consensus 56 ~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~-SK~v~L~~--DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 56 RIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDY-SKSVFLQN--DRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred eeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccch-hhheEeec--CceeeehhhcCeeeeeec
Confidence 45666777888888777888988888653321 11111111111122233 22333322 345666555565544433
Q ss_pred cCCCCcceEEEeCCCceEEEEecCCcCeEEEEecc-CCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeC
Q psy952 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMD-GSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDL 205 (573)
Q Consensus 127 ~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ld-G~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~ 205 (573)
.. .-+.|+++..+--||..-. ...|+|++|+ |.....+. .....-+.+.|.+..+ |..+-...+.|+..+.
T Consensus 133 P~--~GRDm~y~~~scDly~~gs--g~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hg-Lla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 133 PK--FGRDMKYHKPSCDLYLVGS--GSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHG-LLACGTEDGVVEFWDP 204 (703)
T ss_pred Cc--CCccccccCCCccEEEeec--CcceEEEEccccccccccc---cccccceeeeecCccc-eEEecccCceEEEecc
Confidence 22 2378888888888998874 5689999998 44443333 2223335566654433 3333333455555554
Q ss_pred C
Q psy952 206 D 206 (573)
Q Consensus 206 d 206 (573)
.
T Consensus 205 R 205 (703)
T KOG2321|consen 205 R 205 (703)
T ss_pred h
Confidence 3
No 376
>KOG4532|consensus
Probab=23.16 E-value=7.3e+02 Score=24.47 Aligned_cols=176 Identities=11% Similarity=0.067 Sum_probs=82.3
Q ss_pred CCCEEEEEecccEEEEEcCCCcee-ec-ccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCc--ceEEEcCCCCCc
Q psy952 15 IKPWLIFSNKYYVRNMSLDATQYS-LV-HQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTE--KERVIRHDSHGL 90 (573)
Q Consensus 15 ~~~~l~~s~~~~I~~i~l~g~~~~-~~-~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~--~~~i~~~~~~~p 90 (573)
..+.++-++.+.++.+.+++.... ++ .+++ +...++|+.....+- +-....+|+++.++... .+.+.... ..-
T Consensus 128 ~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-~~ns~~~snd~~~~~-~Vgds~~Vf~y~id~~sey~~~~~~a~-t~D 204 (344)
T KOG4532|consen 128 KFPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-TQNSLHYSNDPSWGS-SVGDSRRVFRYAIDDESEYIENIYEAP-TSD 204 (344)
T ss_pred ccceeeccCCcceeEEEEecCcccceeecccc-ceeeeEEcCCCceEE-EecCCCcceEEEeCCccceeeeeEecc-cCC
Confidence 345666667788888887764332 22 2222 256778886444433 33345578887776432 22211111 234
Q ss_pred ceeEEeecCCcEEEEe-CCCCeEEEEEcC--CCceeEeccCCCC----cceEEEeC--CCceEEEEecCCcCeEEEEecc
Q psy952 91 EGLAVDWVGRKLYWLD-RHSKQLDVAELD--GTNRKTLKTAIQD----PRGITLHP--GIGYVYFSSWNLQAYIGKIGMD 161 (573)
Q Consensus 91 ~glavD~~~~~LY~td-~~~~~I~~~~ld--g~~~~~l~~~~~~----P~~Iavdp--~~g~LYwtd~~~~~~I~r~~ld 161 (573)
.|....|..+.+-|+- ...+.+-+.+.. +.-...+-+.-.+ .|..-+.+ .-..||+++. -+.+...+|.
T Consensus 205 ~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh--fs~~hv~D~R 282 (344)
T KOG4532|consen 205 HGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH--FSRVHVVDTR 282 (344)
T ss_pred CceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC--cceEEEEEcc
Confidence 4566666555554443 334444444432 2221111111111 12222222 1346888873 4566666664
Q ss_pred -CCCcEEEEecCCCCCCC-----ceEEEeccCCeEEEEeC
Q psy952 162 -GSNFTRILTHEDDIAWP-----NALTLDYFTERLYWADA 195 (573)
Q Consensus 162 -G~~~~~l~~~~~~l~~P-----~glaiD~~~~~LYw~D~ 195 (573)
+...++|+-.......| .|-.+..++..+|++..
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e 322 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE 322 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence 45555544212222222 23344445566666543
No 377
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=23.15 E-value=1.2e+03 Score=26.98 Aligned_cols=169 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred EEEEEecccEEEEE-cCCCceeecccCCcceEE--------EEEEcCCCEEEEEECCCCeEEEEEcC-CCcceEEEcCCC
Q psy952 18 WLIFSNKYYVRNMS-LDATQYSLVHQDLLNVVA--------MDFHYKENRFYFADVAAKTIYRSRVG-STEKERVIRHDS 87 (573)
Q Consensus 18 ~l~~s~~~~I~~i~-l~g~~~~~~~~~~~~~~~--------v~~d~~~~~ly~~d~~~~~I~~~~~~-g~~~~~i~~~~~ 87 (573)
||+=.+.-.|++.. -++..+...+..+..+.| |-.+..++.|+........|++++|+ |..++..-....
T Consensus 446 fVvRg~~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~ 525 (794)
T PF08553_consen 446 FVVRGSKIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDD 525 (794)
T ss_pred EEECCCcEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCC
Q ss_pred CCcceeEEeec-----CCcEEEEeCCCCeEEEEEcCCCceeEec------cCCCCcceEEEeCCCceEEEEecCCcCeEE
Q psy952 88 HGLEGLAVDWV-----GRKLYWLDRHSKQLDVAELDGTNRKTLK------TAIQDPRGITLHPGIGYVYFSSWNLQAYIG 156 (573)
Q Consensus 88 ~~p~glavD~~-----~~~LY~td~~~~~I~~~~ldg~~~~~l~------~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~ 156 (573)
..+..++=+.. ....|+.- ..++|.++++.-...+++. ..-.+-..+|-.. .|+|-+.. ..+.|.
T Consensus 526 ~~v~~~~p~~K~aqlt~e~tflGl-s~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~-~G~iavgs--~~G~IR 601 (794)
T PF08553_consen 526 IPVVDIAPDSKFAQLTNEQTFLGL-SDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTE-DGYIAVGS--NKGDIR 601 (794)
T ss_pred cceeEecccccccccCCCceEEEE-CCCceEEeccCCCCCceeeccccccccCCCceEEEecC-CceEEEEe--CCCcEE
Q ss_pred EEeccCCCcEEEEecCCCCCCCc-eEEEeccCCeEEEE
Q psy952 157 KIGMDGSNFTRILTHEDDIAWPN-ALTLDYFTERLYWA 193 (573)
Q Consensus 157 r~~ldG~~~~~l~~~~~~l~~P~-glaiD~~~~~LYw~ 193 (573)
-.+--|...++.+ ..|..|. ||.+..++.+|.-+
T Consensus 602 Lyd~~g~~AKT~l---p~lG~pI~~iDvt~DGkwilaT 636 (794)
T PF08553_consen 602 LYDRLGKRAKTAL---PGLGDPIIGIDVTADGKWILAT 636 (794)
T ss_pred eecccchhhhhcC---CCCCCCeeEEEecCCCcEEEEe
No 378
>KOG0264|consensus
Probab=22.89 E-value=9e+02 Score=25.39 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=77.8
Q ss_pred cccEEEEEcCCCce-------eecccC-CcceEEEEEEcCCCEEEEEECCCCeEEEEEcCC--CcceEEEcCCCCCccee
Q psy952 24 KYYVRNMSLDATQY-------SLVHQD-LLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS--TEKERVIRHDSHGLEGL 93 (573)
Q Consensus 24 ~~~I~~i~l~g~~~-------~~~~~~-~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g--~~~~~i~~~~~~~p~gl 93 (573)
.+.|...++..... ...+.+ -..+..++|++....||-+=...+.+...++.. ......+...-.....+
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~ 278 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV 278 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence 45666666654322 111222 234678999999999999888888888888763 22222222223577889
Q ss_pred EEeecCCcEEEEeCCCCeEEEEEcCCCceeEe--ccCCCCcceEEEeCCCceEEEEe
Q psy952 94 AVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL--KTAIQDPRGITLHPGIGYVYFSS 148 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~~~ldg~~~~~l--~~~~~~P~~Iavdp~~g~LYwtd 148 (573)
++.+.+..|.-|-+..++|...+|..-..... ...-.....|..+|.+..++-+.
T Consensus 279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 279 AFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred EeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 99999999999998889999888865443221 12222344555556555554443
No 379
>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins. Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.
Probab=22.84 E-value=81 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=18.3
Q ss_pred CCCCcceEEEeCCCceEEEEec
Q psy952 128 AIQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 128 ~~~~P~~Iavdp~~g~LYwtd~ 149 (573)
.-.-|.+|.||+..|.|.|+-.
T Consensus 9 ~~~LP~gLs~d~~tG~isGtp~ 30 (49)
T PF05345_consen 9 GGGLPSGLSLDPSTGTISGTPT 30 (49)
T ss_pred CCCCCCcEEEeCCCCEEEeecC
Confidence 3445999999999999999853
No 380
>KOG4289|consensus
Probab=22.77 E-value=1e+02 Score=37.19 Aligned_cols=45 Identities=33% Similarity=0.907 Sum_probs=31.9
Q ss_pred ceeeCCcCCCCCCCCCCCCCC--CccccCCCCCccCC--ccccCCCCccccCCCCce
Q psy952 325 HLVCNKESDCEDDSDEPLHCN--VDECAKVETNQCGH--KCVDTLTGYYCECNTGYK 377 (573)
Q Consensus 325 ~~~cd~~~~c~d~sde~~~c~--~~~C~~~~~~~C~~--~C~~~~~~~~C~C~~~f~ 377 (573)
.++|- |+-|-... .|+ ++.|.. .+|++ .|...++.|+|.|.++|.
T Consensus 1221 glrCr----CPpGFTgd-~CeTeiDlCYs---~pC~nng~C~srEggYtCeCrpg~t 1269 (2531)
T KOG4289|consen 1221 GLRCR----CPPGFTGD-YCETEIDLCYS---GPCGNNGRCRSREGGYTCECRPGFT 1269 (2531)
T ss_pred ceeEe----CCCCCCcc-cccchhHhhhc---CCCCCCCceEEecCceeEEecCCcc
Confidence 45663 44443333 453 677865 78988 899999999999998885
No 381
>PF06079 Apyrase: Apyrase; InterPro: IPR009283 This family consists of several eukaryotic apyrase (or adenosine diphosphatase) proteins (3.6.1.5 from EC), and related nucleoside diphosphatases (3.6.1.6 from EC). The salivary apyrases of blood-feeding arthropods are nucleotide hydrolysing enzymes implicated in the inhibition of host platelet aggregation through the hydrolysis of extracellular adenosine diphosphate [].; GO: 0005509 calcium ion binding, 0016462 pyrophosphatase activity; PDB: 2H2N_A 1S18_A 2H2U_A 1S1D_B.
Probab=22.51 E-value=4.6e+02 Score=26.10 Aligned_cols=52 Identities=17% Similarity=0.201 Sum_probs=32.2
Q ss_pred cCCeEEEEeCCCCeEEEEeCCCCcEEEEEeCCccce-----eEEEeeeCCeEEEecC
Q psy952 186 FTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPH-----VFALTLFEDHIYWTDW 237 (573)
Q Consensus 186 ~~~~LYw~D~~~~~I~~~~~dG~~~~~l~~~~~~~~-----p~~ia~~~~~lywtd~ 237 (573)
.+++||-.|..++.|+.+.-+-.-..+++..+.-.. .--+++-++.||+--.
T Consensus 62 FngkLys~DDrTGiVyeI~~~~~vPwviL~dGdG~~~kGfK~EWaTVKd~~LyvGs~ 118 (291)
T PF06079_consen 62 FNGKLYSFDDRTGIVYEIKGDKAVPWVILSDGDGNTSKGFKAEWATVKDDKLYVGSI 118 (291)
T ss_dssp ETTEEEEEETTT-EEEEEETTEEEEEEE-BSTTTTESSB----EEEEETTEEEEE--
T ss_pred ECCEEeeeeCCCceEEEEeCCceeceEEEeCCCCCccccccceeeEEeCCeeeeccC
Confidence 589999999999999998877434445554221111 2236778999997644
No 382
>KOG4532|consensus
Probab=22.50 E-value=7.6e+02 Score=24.39 Aligned_cols=121 Identities=9% Similarity=-0.023 Sum_probs=61.1
Q ss_pred cceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCC-eEEEEeCCCC--eEEEEeCCCC
Q psy952 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTE-RLYWADAHLD--YIASVDLDGK 208 (573)
Q Consensus 132 P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~-~LYw~D~~~~--~I~~~~~dG~ 208 (573)
-..+++++...++-.. ++.++|.+..+|-.....+-. ...-..-.|+....... .+|-+-...+ .|+-++..++
T Consensus 161 ~ns~~~snd~~~~~~V--gds~~Vf~y~id~~sey~~~~-~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSV--GDSRRVFRYAIDDESEYIENI-YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eeeeEEcCCCceEEEe--cCCCcceEEEeCCccceeeee-EecccCCCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 6788888876666544 356778877777554322210 00111112443333333 3333333334 3555555555
Q ss_pred cEEEEEeCCccceeEE----E--eee--CCeEEEecCCCCceEEEeccCCcceEEEcc
Q psy952 209 HKHIVISGQKVPHVFA----L--TLF--EDHIYWTDWNTKSINRADKFNGRDYRVLRN 258 (573)
Q Consensus 209 ~~~~l~~~~~~~~p~~----i--a~~--~~~lywtd~~~~~I~~~~~~~g~~~~~l~~ 258 (573)
....+... -++|.| . ++. -+.||+++-. ..+..++..++.+.++++-
T Consensus 238 pm~~~sst--rp~hnGa~R~c~Fsl~g~lDLLf~sEhf-s~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 238 PMAEISST--RPHHNGAFRVCRFSLYGLLDLLFISEHF-SRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred chhhhccc--CCCCCCceEEEEecCCCcceEEEEecCc-ceEEEEEcccCceeeEEec
Confidence 44433322 223322 1 111 2567777743 5677788888888777643
No 383
>KOG0303|consensus
Probab=21.85 E-value=9.2e+02 Score=25.14 Aligned_cols=114 Identities=4% Similarity=-0.028 Sum_probs=69.6
Q ss_pred cceEEEEEEcCCCEEEEEECCCCeEEEEEc--CCC-----cceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEc
Q psy952 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRV--GST-----EKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAEL 117 (573)
Q Consensus 45 ~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~--~g~-----~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~l 117 (573)
..+..++|.+.+..+.-+-...-.|....+ +|. ...+.+.....++.-++..+...++..+-...+.|..-+.
T Consensus 82 ~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 82 APVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred ccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEec
Confidence 345688999999888887766666655554 332 1122233334566667888888888888877888888777
Q ss_pred CCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952 118 DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 118 dg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l 160 (573)
......+-+..-....++.+.. +|.++.|.. ...+|...+.
T Consensus 162 ~tgeali~l~hpd~i~S~sfn~-dGs~l~Ttc-kDKkvRv~dp 202 (472)
T KOG0303|consen 162 GTGEALITLDHPDMVYSMSFNR-DGSLLCTTC-KDKKVRVIDP 202 (472)
T ss_pred cCCceeeecCCCCeEEEEEecc-CCceeeeec-ccceeEEEcC
Confidence 6544332233333456666665 556666653 2445555544
No 384
>KOG0322|consensus
Probab=21.61 E-value=7.8e+02 Score=24.22 Aligned_cols=56 Identities=11% Similarity=0.137 Sum_probs=39.5
Q ss_pred CCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEec-cCCCCcceEEEeCCCceE
Q psy952 88 HGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK-TAIQDPRGITLHPGIGYV 144 (573)
Q Consensus 88 ~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~-~~~~~P~~Iavdp~~g~L 144 (573)
....|+.|-+ .++|+-|-...++|.|++-.....-.++ -.-...+.+|+.|..+.|
T Consensus 252 pGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lm 308 (323)
T KOG0322|consen 252 PGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELM 308 (323)
T ss_pred CCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchh
Confidence 4667788864 6789999888999999987655543333 344567889998854444
No 385
>KOG0295|consensus
Probab=21.39 E-value=9e+02 Score=24.87 Aligned_cols=146 Identities=13% Similarity=0.080 Sum_probs=73.2
Q ss_pred EEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCcceeEEeecCCcEEEEeCCCCeEEEEEcCCCc--eeEec
Q psy952 49 AMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTN--RKTLK 126 (573)
Q Consensus 49 ~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~--~~~l~ 126 (573)
-+-|++ .-.|.++-.....|+..+...+..+.-+.........|+||..+ ++.++-+..-.|..-+++... ++.++
T Consensus 113 ~v~~hp-~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~~~c~ks~~ 190 (406)
T KOG0295|consen 113 RVIFHP-SEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTFFRCIKSLI 190 (406)
T ss_pred eeeecc-CceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHHHHHHHHhc
Confidence 344443 33344444455677777765544433333334567889999644 444444333234444444432 22233
Q ss_pred cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEEeCCCCeEE
Q psy952 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIA 201 (573)
Q Consensus 127 ~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~ 201 (573)
..-.....+++-|.+. |+..-+....|.....+-......+ ...-.|..-+.+. .+++|+-+-....+|.
T Consensus 191 gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~--~~h~ewvr~v~v~-~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 191 GHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTF--PGHSEWVRMVRVN-QDGTIIASCSNDQTLR 260 (406)
T ss_pred CcccceeeEEEEecCC--eeeecccccceeEEecccceeEEec--cCchHhEEEEEec-CCeeEEEecCCCceEE
Confidence 3333456777777553 3333344556666666644332222 2333355666665 4566666655555443
No 386
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=21.26 E-value=60 Score=19.79 Aligned_cols=19 Identities=42% Similarity=0.931 Sum_probs=14.6
Q ss_pred ccccCCCCccccCCCCcee
Q psy952 360 KCVDTLTGYYCECNTGYKL 378 (573)
Q Consensus 360 ~C~~~~~~~~C~C~~~f~c 378 (573)
.|.+..+.+.|.|+.+|.-
T Consensus 13 ~C~~~~~~~~C~C~~g~~g 31 (36)
T cd00053 13 TCVNTPGSYRCVCPPGYTG 31 (36)
T ss_pred EEecCCCCeEeECCCCCcc
Confidence 5777778888999988853
No 387
>KOG0271|consensus
Probab=21.25 E-value=9.4e+02 Score=24.99 Aligned_cols=155 Identities=13% Similarity=0.081 Sum_probs=79.0
Q ss_pred ccEEEEEcCCCceeecccCC-cceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcce-EEEcCCCCCcceeEEeecC---
Q psy952 25 YYVRNMSLDATQYSLVHQDL-LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKE-RVIRHDSHGLEGLAVDWVG--- 99 (573)
Q Consensus 25 ~~I~~i~l~g~~~~~~~~~~-~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~-~i~~~~~~~p~glavD~~~--- 99 (573)
..++..+++.........+. ..+..|++.|. ++...+...++.|...+...+... .-+...-..+.+||..+..
T Consensus 137 ~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPD-gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p 215 (480)
T KOG0271|consen 137 TTVRLWDLDTETPLFTCKGHKNWVLCVAWSPD-GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVP 215 (480)
T ss_pred ceEEeeccCCCCcceeecCCccEEEEEEECCC-cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCC
Confidence 45566666654433333333 34778899874 455556667788888886543321 1122223456677665432
Q ss_pred -CcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEEEEecCCCCCCC
Q psy952 100 -RKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178 (573)
Q Consensus 100 -~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~l~~~~~~l~~P 178 (573)
.+++.+-+..+.|.+-++.+......+.+=..|---.----.|+||-......-+++++ .+|.-.+.+- ..-.|.
T Consensus 216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a-~dG~~~r~lk---GHahwv 291 (480)
T KOG0271|consen 216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRA-LDGKLCRELK---GHAHWV 291 (480)
T ss_pred CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEc-cchhHHHhhc---ccchhe
Confidence 23445555667777777665443333332222221111112567775543223344444 3455544443 445566
Q ss_pred ceEEEe
Q psy952 179 NALTLD 184 (573)
Q Consensus 179 ~glaiD 184 (573)
|.|++.
T Consensus 292 N~lals 297 (480)
T KOG0271|consen 292 NHLALS 297 (480)
T ss_pred eeeecc
Confidence 777665
No 388
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=20.89 E-value=4.2e+02 Score=22.39 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=31.7
Q ss_pred eEEEeccCCeEEEEeCC----CCeEEEEeCCCCcEEEEEeC---CccceeEEEeeeCCeEEEe
Q psy952 180 ALTLDYFTERLYWADAH----LDYIASVDLDGKHKHIVISG---QKVPHVFALTLFEDHIYWT 235 (573)
Q Consensus 180 glaiD~~~~~LYw~D~~----~~~I~~~~~dG~~~~~l~~~---~~~~~p~~ia~~~~~lywt 235 (573)
|+.+ +|-|||.-.. ...|.++|+....-+.+... ........|..++|+|-..
T Consensus 1 gici---nGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v 60 (129)
T PF08268_consen 1 GICI---NGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALV 60 (129)
T ss_pred CEEE---CcEEEeEEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEE
Confidence 4555 5899998554 56899999987666554431 1122334555566665544
No 389
>PF14251 DUF4346: Domain of unknown function (DUF4346)
Probab=20.79 E-value=2.3e+02 Score=23.97 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=29.4
Q ss_pred eeEEeecCCcEEEEeCCCCeEEEEEcCCCceeEeccCCCCcceEEEeCCCceEEEEec
Q psy952 92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSW 149 (573)
Q Consensus 92 glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~l~~~~~~P~~Iavdp~~g~LYwtd~ 149 (573)
-|++|+.+=.|...|...+.|.+-. ..+..+-.|+|+||.+|.+.-+..
T Consensus 11 ~i~LDp~GYfiI~~d~~~~~i~a~h---------~~n~I~~~Gla~Dpetge~i~~~g 59 (119)
T PF14251_consen 11 FIDLDPAGYFIIYVDREAGEICAEH---------YTNDIDDKGLAVDPETGEVIPCRG 59 (119)
T ss_pred ccccCCCccEEEEEeCCCCeeeHhh---------ccCccCcccceeCCCCCCEEEEec
Confidence 4667765544555555554443211 123334579999999998877763
No 390
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=20.55 E-value=8.5e+02 Score=24.26 Aligned_cols=167 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred ccEEEEEcCCCce----eecccCCcceEEEEEEcCCCEEEEEECC-----CCeEEEEEcCCCcceEEEcCCCCCcceeEE
Q psy952 25 YYVRNMSLDATQY----SLVHQDLLNVVAMDFHYKENRFYFADVA-----AKTIYRSRVGSTEKERVIRHDSHGLEGLAV 95 (573)
Q Consensus 25 ~~I~~i~l~g~~~----~~~~~~~~~~~~v~~d~~~~~ly~~d~~-----~~~I~~~~~~g~~~~~i~~~~~~~p~glav 95 (573)
..+.++++..... ..+.+........+.-..+++||+.--. ...++++++.....+.+.........+-+.
T Consensus 88 ~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~ 167 (323)
T TIGR03548 88 SSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVC 167 (323)
T ss_pred eeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceE
Q ss_pred eecCCcEEEEeCCC----CeEEEEEcCCCceeEeccCCCCc------ceEEEeCCCceEEEEecCC--------------
Q psy952 96 DWVGRKLYWLDRHS----KQLDVAELDGTNRKTLKTAIQDP------RGITLHPGIGYVYFSSWNL-------------- 151 (573)
Q Consensus 96 D~~~~~LY~td~~~----~~I~~~~ldg~~~~~l~~~~~~P------~~Iavdp~~g~LYwtd~~~-------------- 151 (573)
-..+++||+.-... ..++++++....-+.+......+ ...++-...+.||+.-...
T Consensus 168 ~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 247 (323)
T TIGR03548 168 VKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATM 247 (323)
T ss_pred EEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhc
Q ss_pred ----------------------cCeEEEEeccCCCcEEEEecCCCCCCCceEEEeccCCeEEEE
Q psy952 152 ----------------------QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193 (573)
Q Consensus 152 ----------------------~~~I~r~~ldG~~~~~l~~~~~~l~~P~glaiD~~~~~LYw~ 193 (573)
...|++.++.-..=..+. ........+.++-..+++||+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~~r~~~~~~~~~~~iyv~ 309 (323)
T TIGR03548 248 KDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIG--NSPFFARCGAALLLTGNNIFSI 309 (323)
T ss_pred cchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcc--cccccccCchheEEECCEEEEE
No 391
>PF09000 Cytotoxic: Cytotoxic; InterPro: IPR009105 Colicins are plasmid-encoded protein antibiotics, or bacteriocins, produced by strains of Escherichia coli that kill closely related bacteria. Colicins are classified according to the cell-surface receptor they bind to, colicin E3 binding to the BtuB receptor involved in vitamin B12 uptake. The lethal action of colicin E3 arises from its ability to inactivate the ribosome by site-specific RNase cleavage of the 16S ribosomal RNA, which is carried out by the catalytic, or ribonuclease domain. Colicin E3 is comprised of three domains, each domain being involved in a different stage of infection: receptor binding, translocation and cytotoxicity. Colicin E3 is a Y-shaped molecule with the receptor-binding middle domain forming the stalk, the N-terminal translocation domain forming the two globular heads (IPR003058 from INTERPRO), and the C-terminal catalytic domain forming the two globular arms. To neutralise the toxic effects of colicin E3, the host cell produces an immunity protein, which binds to the C-terminal end of the ribonuclease domain and effectively suppresses its activity. This entry represents the ribonuclease domain (also called catalytic or cytotoxic domain) found in various colicins. This domain confers cytotoxic activity to proteins, enabling the formation of nucleolytic breaks in 16S ribosomal RNA. The structure of the domain reveals a highly twisted central beta-sheet elaborated with a short N-terminal alpha-helix [, ]. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0043022 ribosome binding, 0009405 pathogenesis; PDB: 2B5U_C 1JCH_A 1E44_B 2XFZ_Y.
Probab=20.49 E-value=2.4e+02 Score=22.26 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=26.5
Q ss_pred CcceeEEeecCCcEEEEeCCCCeEEEEEcCCCceeE
Q psy952 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124 (573)
Q Consensus 89 ~p~glavD~~~~~LY~td~~~~~I~~~~ldg~~~~~ 124 (573)
..+..-.|..+++||=-|+..+.|++++-+|.+.-.
T Consensus 30 ~~r~rw~~~kG~kiYewDsqHG~lEvy~~~GkHLGe 65 (85)
T PF09000_consen 30 GKRKRWKDKKGRKIYEWDSQHGELEVYNKRGKHLGE 65 (85)
T ss_dssp SB--EEEETTTTEEEEEETTTTEEEEEETT-BEEEE
T ss_pred ccccceEcCCCCEEEEEcCCCCeEEEEcCCCcCccc
Confidence 444456777777899999999999999988887543
No 392
>KOG1310|consensus
Probab=20.44 E-value=7.4e+02 Score=26.99 Aligned_cols=112 Identities=9% Similarity=0.095 Sum_probs=67.3
Q ss_pred eEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcC-CCCCcceeEEee-cCCcEEEEeCCCCeEEEEEcCCCcee-
Q psy952 47 VVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRH-DSHGLEGLAVDW-VGRKLYWLDRHSKQLDVAELDGTNRK- 123 (573)
Q Consensus 47 ~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~-~~~~p~glavD~-~~~~LY~td~~~~~I~~~~ldg~~~~- 123 (573)
+..|+|. .+|.|..+.....+|...+.-.....-.+.+ ....+..+.|=+ .++.|.++-.+...|.+++++...-.
T Consensus 53 VN~LeWn-~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 53 VNCLEWN-ADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred ecceeec-CCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 5678888 4667777776666777666542222112222 234444444443 45678888888889999998742211
Q ss_pred -------Eec---cCCCCcceEEEeCCCceEEEEecCCcCeEEEEec
Q psy952 124 -------TLK---TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGM 160 (573)
Q Consensus 124 -------~l~---~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~l 160 (573)
++. -.+....-||.-|..-..||+-. ..+.|...++
T Consensus 132 ~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas-EDGtirQyDi 177 (758)
T KOG1310|consen 132 MDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS-EDGTIRQYDI 177 (758)
T ss_pred cccCccchhhhhhhhhhhhhheecCCCCCceEEEec-CCcceeeecc
Confidence 111 24556788999986668999874 3445554443
No 393
>KOG3658|consensus
Probab=20.30 E-value=2.7e+02 Score=31.00 Aligned_cols=17 Identities=35% Similarity=0.849 Sum_probs=11.1
Q ss_pred CCCCCCCceecCCCcccCC
Q psy952 408 RPCDKDTEFACRNGHCIPK 426 (573)
Q Consensus 408 ~~C~~~~~f~C~~g~ci~~ 426 (573)
+.|. . .+.|.+|+|++.
T Consensus 564 t~C~-~-~~~C~~G~C~gs 580 (764)
T KOG3658|consen 564 TVCN-E-TGVCINGKCIGS 580 (764)
T ss_pred Cccc-c-cceEeCCcCccH
Confidence 3465 3 577888887764
No 394
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=20.30 E-value=1.1e+03 Score=25.25 Aligned_cols=223 Identities=15% Similarity=0.210 Sum_probs=0.0
Q ss_pred ccEEEEEcCCC-----------ceeecccCCcceEEEEEEcCCCEEEEEECCCCeEEEEEcCCCcceEEEcCCCCCccee
Q psy952 25 YYVRNMSLDAT-----------QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGL 93 (573)
Q Consensus 25 ~~I~~i~l~g~-----------~~~~~~~~~~~~~~v~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~i~~~~~~~p~gl 93 (573)
+.|+.+++.+. ...-+......|..|.++|.++.|.+.+.+.-.|+. ........... |+
T Consensus 2 ~~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g~geY~iyt----~~~~r~k~~G~-----g~ 72 (443)
T PF04053_consen 2 NEIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCGDGEYEIYT----ALAWRNKAFGS-----GL 72 (443)
T ss_dssp TEEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEETTEEEEEE----TTTTEEEEEEE------S
T ss_pred CceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEcCCEEEEEE----ccCCcccccCc-----ee
Q ss_pred EEeecCCcEEEEeCCCCeEEE-EEcCCCceeEec-----cCCCCcceEEEeCCCceEEEEecCCcCeEEEEeccCCCcEE
Q psy952 94 AVDWVGRKLYWLDRHSKQLDV-AELDGTNRKTLK-----TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 167 (573)
Q Consensus 94 avD~~~~~LY~td~~~~~I~~-~~ldg~~~~~l~-----~~~~~P~~Iavdp~~g~LYwtd~~~~~~I~r~~ldG~~~~~ 167 (573)
.+=|..++-|.+-...++|.+ -+++....+.+. ..+....=|.+.. .+.|.+-||.....|.+++..+ .+.+
T Consensus 73 ~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~~-vk~V 150 (443)
T PF04053_consen 73 SFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKLPFSVEKIFGGNLLGVKS-SDFICFYDWETGKLIRRIDVSA-VKYV 150 (443)
T ss_dssp EEEE-TSSEEEEE-TTS-EEEEETTEE-TT-----SS-EEEEE-SSSEEEEE-TTEEEEE-TTT--EEEEESS-E--EEE
T ss_pred EEEEecCccEEEEECCCeEEEEEcCccccceEEcCCcccceEEcCcEEEEEC-CCCEEEEEhhHcceeeEEecCC-CcEE
Q ss_pred EEecCCCCCCCceEEEeccCCeEEEEeCCCCeEEEEeCCCCc-EEEEEeCCccceeEEEeeeCCeEEEecCCCCceEEEe
Q psy952 168 ILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKH-KHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246 (573)
Q Consensus 168 l~~~~~~l~~P~glaiD~~~~~LYw~D~~~~~I~~~~~dG~~-~~~l~~~~~~~~p~~ia~~~~~lywtd~~~~~I~~~~ 246 (573)
+. +... .=+++- ....+|+.+.....+....-+|-. .-.++... .....+..+.++-+++|... +|..
T Consensus 151 ~W--s~~g---~~val~-t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~-~~~IkSg~W~~d~fiYtT~~--~lkY-- 219 (443)
T PF04053_consen 151 IW--SDDG---ELVALV-TKDSIYILKYNLEAVAAIPEEGVEDAFELIHEI-SERIKSGCWVEDCFIYTTSN--HLKY-- 219 (443)
T ss_dssp EE---TTS---SEEEEE--S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE--S--SEEEEETTEEEEE-TT--EEEE--
T ss_pred EE--ECCC---CEEEEE-eCCeEEEEEecchhcccccccCchhceEEEEEe-cceeEEEEEEcCEEEEEcCC--eEEE--
Q ss_pred ccCCcceEEEcccCCCceeeeeeec
Q psy952 247 KFNGRDYRVLRNTTHRPYDIHVYHP 271 (573)
Q Consensus 247 ~~~g~~~~~l~~~~~~p~~i~v~~~ 271 (573)
+-+....++.. +..|+-|.=+.+
T Consensus 220 -l~~Ge~~~i~~-ld~~~yllgy~~ 242 (443)
T PF04053_consen 220 -LVNGETGIIAH-LDKPLYLLGYLP 242 (443)
T ss_dssp -EETTEEEEEEE--SS--EEEEEET
T ss_pred -EEcCCcceEEE-cCCceEEEEEEc
Done!