RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy952
(573 letters)
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 276 bits (707), Expect = 2e-89
Identities = 69/262 (26%), Positives = 124/262 (47%), Gaps = 13/262 (4%)
Query: 19 LIFSNKYYVRNMSLDATQYS------LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRS 72
L+F+ + + L+ +H ++ + F + Y+ D++ +I R+
Sbjct: 4 LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRA 63
Query: 73 RVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
+ E +IR D EG+A+D +GR ++W D +++VA++DGT R+ L T + +
Sbjct: 64 SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN 123
Query: 132 PRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERL 190
PRGI P G +Y++ WN I MDG+N + D++ PN LT D F+ +L
Sbjct: 124 PRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ--DNLGLPNGLTFDAFSSQL 181
Query: 191 YWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
W DA ++ + V+ G + + FA+T + ++Y+TDW T S+ D
Sbjct: 182 CWVDAGTHRAECLNPAQPGRRKVLEG--LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS 239
Query: 251 RDYRVL-RNTTHRPYDIHVYHP 271
++ + R Y I +
Sbjct: 240 KEMDTFHPHKQTRLYGITIALS 261
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 261 bits (668), Expect = 4e-83
Identities = 101/375 (26%), Positives = 172/375 (45%), Gaps = 68/375 (18%)
Query: 17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-- 74
+L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ + I +++
Sbjct: 2 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 61
Query: 75 --GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
G + + VI D +GLAVDW+ +YW D + VA+ G RKTL +
Sbjct: 62 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 121
Query: 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 191
PR I + P G++Y++ W A I K G++G + ++T ++I WPN +TLD + RLY
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLY 179
Query: 192 WADAHLDYIASVDLDGKHKHIVISGQK-VPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
W D+ L I+S+D++G ++ ++ +K + H F+L +FED ++WTD ++I A++ G
Sbjct: 180 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239
Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGNKENSTCS 310
D +L P D+ ++H L + C
Sbjct: 240 SDVNLLAENLLSPEDMVLFHNLTQPRGV----------------------------NWC- 270
Query: 311 SSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYC 370
+ +NG C +C S + C
Sbjct: 271 -ERTTLSNGGC---QYLCLPAPQINPHS---------------------------PKFTC 299
Query: 371 ECNTGYKLLEDGKAC 385
C G L D ++C
Sbjct: 300 ACPDGMLLARDMRSC 314
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 249 bits (637), Expect = 2e-78
Identities = 96/274 (35%), Positives = 149/274 (54%), Gaps = 7/274 (2%)
Query: 17 PWLIFSNKYYVRNMSL--DATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
P L+++N+ +R + ++V L + A+DF + Y++DV+ + I R+
Sbjct: 5 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEF 64
Query: 75 -GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDP 132
+ + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L + P
Sbjct: 65 NKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQP 124
Query: 133 RGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYW 192
R I L P G++Y++ W I + GMDGS+ I+ +I WPN LTLDY ++LYW
Sbjct: 125 RAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYW 182
Query: 193 ADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRD 252
ADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +K+ G
Sbjct: 183 ADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241
Query: 253 YRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
R + + P DIH + + G
Sbjct: 242 LREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 275
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 227 bits (580), Expect = 3e-69
Identities = 106/280 (37%), Positives = 157/280 (56%), Gaps = 4/280 (1%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
+ +P L+F+N+ +R + ++Y+L+ +L N +A+DFH++ +++DV
Sbjct: 79 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD 138
Query: 68 TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
I R+ + + E V+ GLAVDWV KLYW D + +++VA LDG +RK L
Sbjct: 139 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 198
Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
+++ PR I LHP G +Y++ W I MDGS I + WPN LT+DY
Sbjct: 199 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYA 256
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
R+YW DA I +LDG H+ VIS +PH FA+T+FED +YWTDW+TKSIN A+
Sbjct: 257 GRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSAN 315
Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
KF G++ ++RN H P DIH HP + + G
Sbjct: 316 KFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 355
Score = 60.6 bits (146), Expect = 5e-10
Identities = 29/134 (21%), Positives = 43/134 (32%), Gaps = 11/134 (8%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
+ C V C KC C C+TGY+L EDG+ C D++EC + G CSQ C
Sbjct: 3 EENCN-VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNEC-AEEGYCSQ---GC 57
Query: 406 HNRP------CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERC 459
N C+ E C D + +
Sbjct: 58 TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117
Query: 460 PGKTNYRCIPKWLF 473
++ + +F
Sbjct: 118 AIALDFHHRRELVF 131
Score = 30.5 bits (68), Expect = 1.5
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 11/129 (8%)
Query: 386 TDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNG-HCIPKLWVCDFDNDCGDDSDEPA 444
T + C G C+Q C + C G C N+C ++
Sbjct: 1 TGEENCNVNNGGCAQ---KCQMIR--GAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCSQ 55
Query: 445 YMCRQRN-----CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSV 499
C G+E P + + + + + ++ L ++
Sbjct: 56 GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNL 115
Query: 500 CNGVNDCKD 508
N +
Sbjct: 116 ENAIALDFH 124
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 223 bits (570), Expect = 2e-65
Identities = 96/280 (34%), Positives = 149/280 (53%), Gaps = 7/280 (2%)
Query: 11 RRDSIKPWLIFSNKYYVRNMSLD--ATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
P L+++N+ +R + ++V L + A+DF + Y++DV+ +
Sbjct: 4 HHHHHAPLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEA 63
Query: 69 IYRSR-VGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
I R+ + + V+ +GLA DW+G KLYW D + +++V+ LDG+ RK L
Sbjct: 64 IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW 123
Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
+ PR I L P G++Y++ W I + GMDGS+ I+ +I WPN LTLDY
Sbjct: 124 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYE 181
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
++LYWADA L++I +LDG ++ V+ G +PH FALTLFED +YWTDW+T SI +
Sbjct: 182 EQKLYWADAKLNFIHKSNLDGTNRQAVVKGS-LPHPFALTLFEDILYWTDWSTHSILACN 240
Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
K+ G R + + P DIH + + G
Sbjct: 241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNG 280
Score = 207 bits (528), Expect = 2e-59
Identities = 80/281 (28%), Positives = 142/281 (50%), Gaps = 8/281 (2%)
Query: 4 WDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENRFY 60
E+ +D L+ + + +R +SLD ++ L +D+ + +A+D+ E Y
Sbjct: 305 LLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIY 364
Query: 61 FADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGT 120
+ D + I RS + + + V+ +G+AVDWV R LYW D + +++V L+GT
Sbjct: 365 WTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT 424
Query: 121 NRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPN 179
RK L +++PR I L P +GY+Y++ W I + +DGS+ ++ + WPN
Sbjct: 425 MRKILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN--TSLGWPN 482
Query: 180 ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNT 239
L LDY ++YW DA D I ++ DG + +++ + +PH+F TL D++YWTDW
Sbjct: 483 GLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK-IPHIFGFTLLGDYVYWTDWQR 541
Query: 240 KSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAW 280
+SI R K + V+ + + + + +
Sbjct: 542 RSIERVHKRSAER-EVIIDQLPDLMGLKATNVHRVIGSNPC 581
Score = 49.0 bits (116), Expect = 3e-06
Identities = 20/134 (14%), Positives = 44/134 (32%), Gaps = 3/134 (2%)
Query: 18 WLIFSNKYYVRNMSLDAT-QYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76
W + + +LD + + LV+ L + Y E + Y+ D I
Sbjct: 451 WTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDG 510
Query: 77 TEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGIT 136
T + ++ + G + G +YW D + ++ R+ + + D G+
Sbjct: 511 TGRRVLVEDKIPHIFGFTLL--GDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLK 568
Query: 137 LHPGIGYVYFSSWN 150
+ +
Sbjct: 569 ATNVHRVIGSNPCA 582
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 214 bits (545), Expect = 5e-64
Identities = 92/281 (32%), Positives = 157/281 (55%), Gaps = 9/281 (3%)
Query: 4 WDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFAD 63
CK SI +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D
Sbjct: 72 PHTKACKAVGSI-AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSD 130
Query: 64 VAAKTIYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDG 119
++ + I +++ G + + VI D +GLAVDW+ +YW D + VA+ G
Sbjct: 131 LSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190
Query: 120 TNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWP 178
RKTL + PR I + P G++Y++ W A I K G++G + ++T ++I WP
Sbjct: 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWP 248
Query: 179 NALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDW 237
N +TLD + RLYW D+ L I+S+D++G ++ ++ +++ H F+L +FED ++WTD
Sbjct: 249 NGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 308
Query: 238 NTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRH 278
++I A++ G D +L P D+ ++H L
Sbjct: 309 INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGV 349
Score = 57.5 bits (138), Expect = 4e-09
Identities = 27/134 (20%), Positives = 44/134 (32%), Gaps = 12/134 (8%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
+EC C H C D GY C C G++L+ + C DIDEC + P CSQ +C
Sbjct: 1 NEC-LDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRR-CEDIDEC-QDPDTCSQ---LCV 54
Query: 407 NRP------CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCP 460
N C++ + C + + + + R
Sbjct: 55 NLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNV 114
Query: 461 GKTNYRCIPKWLFC 474
+ ++
Sbjct: 115 VALDTEVASNRIYW 128
Score = 44.1 bits (103), Expect = 1e-04
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 14/143 (9%)
Query: 317 NNGKC--------IDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
NNG C I Y +C ++DEC + + C CV+ GY
Sbjct: 6 NNGGCSHVCNDLKIGYECLCPDGFQLVAQRR---CEDIDECQ--DPDTCSQLCVNLEGGY 60
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLW 428
C+C G++L KAC + + + + +
Sbjct: 61 KCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS-LIPNLRNVVALDT 119
Query: 429 VCDFDNDCGDDSDEPAYMCRQRN 451
+ D + Q +
Sbjct: 120 EVASNRIYWSDLSQRMICSTQLD 142
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 218 bits (557), Expect = 2e-63
Identities = 84/260 (32%), Positives = 148/260 (56%), Gaps = 8/260 (3%)
Query: 17 PWLIFSNKYYVRNMSLDATQYS--LVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV 74
+L+FS + +R +SL+ + + + A+DF +NR Y+ D++ KTI R+ +
Sbjct: 7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFM 66
Query: 75 GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQDPR 133
+ E V+ EG+AVDW+G+ LYW D + +++V++LDG +R+ L + PR
Sbjct: 67 NGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPR 126
Query: 134 GITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWA 193
+ L P G++Y++ W + I + MDGS T ++ ++ N LT+DY RLYW
Sbjct: 127 ALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP---NVGRANGLTIDYAKRRLYWT 183
Query: 194 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDY 253
D + I S ++ G ++ ++ +PH F LT ++D+IYWTDW+ +SI RA+K +G++
Sbjct: 184 DLDTNLIESSNMLGLNREVIADD--LPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQNR 241
Query: 254 RVLRNTTHRPYDIHVYHPLK 273
+++ DI V+H +
Sbjct: 242 TIIQGHLDYVMDILVFHSSR 261
Score = 195 bits (496), Expect = 6e-55
Identities = 69/294 (23%), Positives = 122/294 (41%), Gaps = 17/294 (5%)
Query: 2 PGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYS---LVHQDLLNVVAMDFHYKENR 58
D TC +L+FS K + M +D Q L L NV A+D+ + +
Sbjct: 297 LNADNRTCSAPT---TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQ 353
Query: 59 FYFADVAAKTIYRSRVGSTEKERVIRHDSHGL------EGLAVDWVGRKLYWLDRHSKQL 112
Y+ D I +++ ++ V+ L++D R +YW + +
Sbjct: 354 LYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVI 413
Query: 113 DVAELDGTNRKTL-KTAIQDPRGITLHPGIGYVYFSSWNLQAY-IGKIGMDGSNFTRILT 170
+V LDG + + K PR + ++P GY+YF++ ++ I + +DG+ +
Sbjct: 414 NVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFF 473
Query: 171 HEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFED 230
++ P AL LD +L+WAD+ L I S DL G ++ ++ + LT+FE+
Sbjct: 474 --SGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDS-NILQPVGLTVFEN 530
Query: 231 HIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAH 284
+YW D + I + D ++ + DIH L A
Sbjct: 531 WLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCAQ 584
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 208 bits (529), Expect = 3e-62
Identities = 106/280 (37%), Positives = 159/280 (56%), Gaps = 4/280 (1%)
Query: 8 TCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAK 67
+ +P L+F+N+ +R + ++Y+L+ +L N +A+DFH++ +++DV
Sbjct: 36 RSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLD 95
Query: 68 TIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-K 126
I R+ + + E V+ GLAVDWV KLYW D + +++VA LDG +RK L
Sbjct: 96 RILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLW 155
Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
+++ PR I LHP G +Y++ W I MDGS R + + + WPN LT+DY
Sbjct: 156 QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHLFWPNGLTIDYA 213
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
R+YW DA I +LDG H+ VIS +PH FA+T+FED +YWTDW+TKSIN A+
Sbjct: 214 GRRMYWVDAKHHVIERANLDGSHRKAVISQG-LPHPFAITVFEDSLYWTDWHTKSINSAN 272
Query: 247 KFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
KF G++ ++RN H P DIH HP + + G
Sbjct: 273 KFTGKNQEIIRNKLHFPMDIHTLHPQRQPAGKNRCGDNNG 312
Score = 41.4 bits (96), Expect = 5e-04
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
V+ECA E C C ++ + C C GY+L D ++C +
Sbjct: 1 VNECA--EEGYCSQGCTNSEGAFQCWCEAGYELRPDRRSCKALGPE 44
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 213 bits (542), Expect = 7e-61
Identities = 88/271 (32%), Positives = 154/271 (56%), Gaps = 8/271 (2%)
Query: 9 CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKT 68
+ +L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ +
Sbjct: 370 ACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRM 429
Query: 69 IYRSRV----GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
I +++ G + + VI D +GLAVDW+ +YW D + VA+ G RKT
Sbjct: 430 ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT 489
Query: 125 L-KTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L + PR I + P G++Y++ W A I K G++G + ++T ++I WPN +TL
Sbjct: 490 LFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITL 547
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSI 242
D + RLYW D+ L I+S+D++G ++ ++ +++ H F+L +FED ++WTD ++I
Sbjct: 548 DLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAI 607
Query: 243 NRADKFNGRDYRVLRNTTHRPYDIHVYHPLK 273
A++ G D +L P D+ ++H L
Sbjct: 608 FSANRLTGSDVNLLAENLLSPEDMVLFHQLT 638
Score = 146 bits (368), Expect = 3e-37
Identities = 75/292 (25%), Positives = 100/292 (34%), Gaps = 54/292 (18%)
Query: 305 ENSTCSSSQFRCNN--GKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV 362
+ TC S F C +CI C+ + DC++ SDE C C
Sbjct: 43 LSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE-QGCPPKTC------------- 88
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGH 422
+ C+ G + C +C++ A C C F C +
Sbjct: 89 ---SQDEFRCHDGKCISRQFV-CDSDRDCLD-----GSDEASCPVLTCG-PASFQCNSST 138
Query: 423 CIPKLWVCDFDNDCGDDSDEPAYMCR--------QRNCTKGWERCPGKTNYRCIPKWLFC 474
CIP+LW CD D DC D SDE CR C+ C + CI C
Sbjct: 139 CIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL---SGECIHSSWRC 195
Query: 475 DGKDDCRDGSDELPQNCPLESLGS-------------VCNGVNDCKDNITSDETHARCPS 521
DG DC+D SDE C+ DCKD SDE
Sbjct: 196 DGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDM--SDEVGCVNV- 252
Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
+ P+ KC + C+ +C+ DC D SDE C C N+
Sbjct: 253 TLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGG 303
Score = 131 bits (329), Expect = 3e-32
Identities = 74/269 (27%), Positives = 102/269 (37%), Gaps = 51/269 (18%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE-PLHCNVDECAKVETNQCGHKCVDT 364
C ++F+C +GKCI Y VC+ ++C+D SDE C C + + G
Sbjct: 3 GDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCI 62
Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
+ C+ D + C + C +D EF C +G CI
Sbjct: 63 PQFWRCDGQVDCDNGSDEQGCP--------------------PKTCSQD-EFRCHDGKCI 101
Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
+ +VCD D DC D SDE C C +C + CIP+ CD DC DGS
Sbjct: 102 SRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCN---SSTCIPQLWACDNDPDCEDGS 156
Query: 485 DELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWL 544
DE PQ C + + C C + C+ W
Sbjct: 157 DEWPQRCR---------------------GLYVFQGDSSPCSAFEFHCLS-GECIHSSWR 194
Query: 545 CDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
CDG DC D SDE+ C TC + F+
Sbjct: 195 CDGGPDCKDKSDEEN--CAVATCRPDEFQ 221
Score = 112 bits (282), Expect = 2e-26
Identities = 57/280 (20%), Positives = 82/280 (29%), Gaps = 36/280 (12%)
Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
TC + F+CN+ CI C+ + DCED SDE + +
Sbjct: 123 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW--------------PQRCRGLYV 168
Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
G C+ G+ C P + + EF C +G+CI
Sbjct: 169 FQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCI 228
Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
CD + DC D SDE + +C + CI C+ DCRD S
Sbjct: 229 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCH---SGECITLDKVCNMARDCRDWS 285
Query: 485 DELPQNCPLESLGS------------VCNGVNDCKD-------NITSDETHARCPSNITC 525
DE + C C D D + P +
Sbjct: 286 DEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQ 345
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
+L+ C E + L C + L R
Sbjct: 346 LCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNR 385
Score = 74.5 bits (182), Expect = 4e-14
Identities = 40/173 (23%), Positives = 53/173 (30%), Gaps = 13/173 (7%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
++F+C++G+CI VCN DC D SDEP+ C H C D
Sbjct: 253 TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLK 312
Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIP 425
GY C C G++ L + C DIDEC + + C C G
Sbjct: 313 IGYECLCPDGFQ-LVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ------CEEGFQ-- 363
Query: 426 KLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD 478
D AY+ IP D
Sbjct: 364 ----LDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALD 412
Score = 28.2 bits (62), Expect = 9.5
Identities = 12/119 (10%), Positives = 26/119 (21%), Gaps = 6/119 (5%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
N + C +G + CED + + +C +
Sbjct: 309 NDLKIGYECLCPDGFQLVAQ------RRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGF 362
Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
T+ E + S+Y ++ N + +
Sbjct: 363 QLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIY 421
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 210 bits (536), Expect = 1e-59
Identities = 88/263 (33%), Positives = 153/263 (58%), Gaps = 8/263 (3%)
Query: 17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRV-- 74
+L F+N++ VR M+LD ++Y+ + +L NVVA+D NR Y++D++ + I +++
Sbjct: 396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 455
Query: 75 --GSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTL-KTAIQD 131
G + + VI D +GLAVDW+ +YW D + VA+ G RKTL +
Sbjct: 456 AHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSK 515
Query: 132 PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLY 191
PR I + P G++Y++ W A I K G++G + ++T ++I WPN +TLD + RLY
Sbjct: 516 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLY 573
Query: 192 WADAHLDYIASVDLDGKHKHIVISG-QKVPHVFALTLFEDHIYWTDWNTKSINRADKFNG 250
W D+ L I+S+D++G ++ ++ +++ H F+L +FED ++WTD ++I A++ G
Sbjct: 574 WVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 633
Query: 251 RDYRVLRNTTHRPYDIHVYHPLK 273
D +L P D+ ++H L
Sbjct: 634 SDVNLLAENLLSPEDMVLFHNLT 656
Score = 139 bits (352), Expect = 4e-35
Identities = 78/275 (28%), Positives = 105/275 (38%), Gaps = 51/275 (18%)
Query: 300 GSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH 359
+G C ++F+C +GKCI Y VC+ ++C+D SDE + K CG
Sbjct: 15 AAGTAVGDRCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCG- 73
Query: 360 KCVDTLTGYYCECNTGYKLLEDGKACTD-IDECIEQPGVCSQYPAMCHNRPCDKDTEFAC 418
G C + + C + DE P CS EF C
Sbjct: 74 -------GRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCS-------------QDEFRC 113
Query: 419 RNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD 478
+G CI + +VCD D DC D SDE C C +C + CIP+ CD
Sbjct: 114 HDGKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQCN---SSTCIPQLWACDNDP 168
Query: 479 DCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNIC 538
DC DGSDE PQ C + + C C + C
Sbjct: 169 DCEDGSDEWPQRCR---------------------GLYVFQGDSSPCSAFEFHCLS-GEC 206
Query: 539 VEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
+ W CDG DC D SDE+ +C TC + F+
Sbjct: 207 IHSSWRCDGGPDCKDKSDEE--NCAVATCRPDEFQ 239
Score = 134 bits (339), Expect = 2e-33
Identities = 70/269 (26%), Positives = 94/269 (34%), Gaps = 49/269 (18%)
Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
TCS +FRC++GKCI VC+ + DC D SDE C V C C+
Sbjct: 102 PPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPASFQCNSSTCIPQ 160
Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCI 424
L + C+ + + D Y + PC EF C +G CI
Sbjct: 161 L--WACDNDPDCEDGSDEWPQRC----------RGLYVFQGDSSPCSAF-EFHCLSGECI 207
Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
W CD DC D SDE C C +C + CI CD + DC+D S
Sbjct: 208 HSSWRCDGGPDCKDKSDE--ENCAVATCRPDEFQCS---DGNCIHGSRQCDREYDCKDMS 262
Query: 485 DELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWL 544
DE+ + P+ KC + C+ +
Sbjct: 263 DEVGCVNV-----------------------------TLCEGPNKFKCHS-GECITLDKV 292
Query: 545 CDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
C+ DC D SDE C C N+
Sbjct: 293 CNMARDCRDWSDEPIKECGTNECLDNNGG 321
Score = 130 bits (327), Expect = 6e-32
Identities = 71/228 (31%), Positives = 91/228 (39%), Gaps = 50/228 (21%)
Query: 367 GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPK 426
G+ L G C+++ EF C++G CI
Sbjct: 2 GWKLRWTVALLLAAAGT---------------------AVGDRCERN-EFQCQDGKCISY 39
Query: 427 LWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE 486
WVCD +C D SDE C C G C G+ N RCIP++ CDG+ DC +GSDE
Sbjct: 40 KWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVN-RCIPQFWRCDGQVDCDNGSDE 98
Query: 487 L---PQNCPLE----------SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCA 533
P+ C + S VC+ DC D SDE A CP TC P +C
Sbjct: 99 QGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDG--SDE--ASCPVL-TCGPASFQCN 153
Query: 534 NTNICVEPYWLCDGDNDCGDMSDEDPLHCQ--------QRTCPQNSFR 573
+ + C+ W CD D DC D SDE P C+ C F
Sbjct: 154 S-STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFH 200
Score = 92.2 bits (228), Expect = 1e-19
Identities = 50/266 (18%), Positives = 77/266 (28%), Gaps = 36/266 (13%)
Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV 362
++S CS+ +F C +G+CI C+ DC+D SDE +C V C
Sbjct: 188 QGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE-ENCAVATC------------- 233
Query: 363 DTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGH 422
+C+ G + + C +C + S + C+ +F C +G
Sbjct: 234 ---RPDEFQCSDG-NCIHGSRQCDREYDCKD----MSDEVGCVNVTLCEGPNKFKCHSGE 285
Query: 423 CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGK------------TNYRCIPK 470
CI VC+ DC D SDEP C C C + +
Sbjct: 286 CITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVA 345
Query: 471 WLFCDGKDDCRDGSDELPQ--NCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPH 528
C+ D+C+D N G + T
Sbjct: 346 QRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHE 405
Query: 529 HLKCANTNICVEPYWLCDGDNDCGDM 554
K + D
Sbjct: 406 VRKMTLDRSEYTSLIPNLRNVVALDT 431
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 114 bits (286), Expect = 2e-28
Identities = 32/250 (12%), Positives = 73/250 (29%), Gaps = 25/250 (10%)
Query: 10 KRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFA---DVAA 66
+ ++ + + + +++ D + N Y+ A
Sbjct: 73 NNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTA 128
Query: 67 KTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLK 126
++YR R+ EK+++ H + R Y+ + + QL + +
Sbjct: 129 TSLYRIRIDGEEKKKIKNHY-----LFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALF- 182
Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
+ VY+ N I + ++ N + E +I N +
Sbjct: 183 --YDCNCYKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLT--EANIEHYN-VYGSLI 237
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRAD 246
Y + V DG + G + + ++Y+TD+ +
Sbjct: 238 ---FYQRGGDNPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYFTDFVSNKEYCTS 290
Query: 247 KFNGRDYRVL 256
N + L
Sbjct: 291 TQNPDTIKAL 300
Score = 47.4 bits (112), Expect = 6e-06
Identities = 24/177 (13%), Positives = 62/177 (35%), Gaps = 32/177 (18%)
Query: 99 GRKLYWLD-RHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAY--- 154
++++ + + +L +DG+N L + + ++ YVY+ N Q
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLS----NDTAMYINADKNYVYYVRNNNQKITSQ 80
Query: 155 ---------IGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY---IAS 202
+ +I +G T + D +L +Y +Y+ +
Sbjct: 81 TFFSYDRNSLCRIKRNGHGSTVLD---PDPCIYASLIGNY----IYYLHYDTQTATSLYR 133
Query: 203 VDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNT 259
+ +DG+ K + + ++F + + Y+ + + R D + + +
Sbjct: 134 IRIDGEEKKKIKN----HYLFTCNTSDRYFYYNNPKNGQLYRYD-TASQSEALFYDC 185
Score = 46.3 bits (109), Expect = 1e-05
Identities = 16/135 (11%), Positives = 51/135 (37%), Gaps = 16/135 (11%)
Query: 142 GYVYFSSWNLQAYIGKIGMDGSNFTRILTH--------EDDIAWPNALTLDYFTERLYWA 193
G V+FS+ N + + +DGSN ++ ++ + + + +
Sbjct: 26 GEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMYINADKNYVYYVR--NNNQKITSQTFF 83
Query: 194 DAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINR--ADKFNGR 251
+ + + +G ++ + +L ++IY+ ++T++ + +G
Sbjct: 84 SYDRNSLCRIKRNGHGSTVLDPDPCIYA----SLIGNYIYYLHYDTQTATSLYRIRIDGE 139
Query: 252 DYRVLRNTTHRPYDI 266
+ + ++N +
Sbjct: 140 EKKKIKNHYLFTCNT 154
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 93.9 bits (234), Expect = 1e-23
Identities = 35/84 (41%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 467
+ C + EF C +G CI + +VCD D DC D SDE + C C +C + C
Sbjct: 1 KTCSQA-EFRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLTCGPASFQCN---SSTC 54
Query: 468 IPKWLFCDGKDDCRDGSDELPQNC 491
IP+ CD DC DGSDE PQ C
Sbjct: 55 IPQLWACDNDPDCEDGSDEWPQRC 78
Score = 73.5 bits (181), Expect = 2e-16
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 35/114 (30%)
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
+ C++ RC + +CI + CD DC DGSDE +CP
Sbjct: 1 KTCSQAEFRC---HDGKCISRQFVCDSDRDCLDGSDE--ASCP----------------- 38
Query: 510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
+TC P +C + + C+ W CD D DC D SDE P C+
Sbjct: 39 ------------VLTCGPASFQCNS-STCIPQLWACDNDPDCEDGSDEWPQRCR 79
Score = 58.4 bits (142), Expect = 3e-11
Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR 448
C C F C + CIP+LW CD D DC D SDE CR
Sbjct: 37 CPVLTCGPA-SFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79
Score = 56.5 bits (137), Expect = 2e-10
Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVE 353
TCS ++FRC++GKCI VC+ + DC D SDE C V C
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDE-ASCPVLTCGPAS 46
Score = 55.0 bits (133), Expect = 5e-10
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
TC +C + C+ ++CD D DC D SDE C TC SF+
Sbjct: 2 TCSQAEFRCHD-GKCISRQFVCDSDRDCLDGSDE--ASCPVLTCGPASFQ 48
Score = 49.6 bits (119), Expect = 5e-08
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
TC + F+CN+ CI C+ + DCED SDE
Sbjct: 38 PVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDE-WPQR 77
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 92.7 bits (231), Expect = 3e-23
Identities = 34/84 (40%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRC 467
R C + +F+C +G CIP W CD D+DCGD SDE A C N RC
Sbjct: 3 RTCPPN-QFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCN---NGRC 58
Query: 468 IPKWLFCDGKDDCRDGSDELPQNC 491
I CD +DC D SDE C
Sbjct: 59 ININWRCDNDNDCGDNSDE--AGC 80
Score = 69.6 bits (171), Expect = 4e-15
Identities = 31/101 (30%), Positives = 33/101 (32%), Gaps = 32/101 (31%)
Query: 464 NYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNI 523
+ RCIP CD DDC D SDE C
Sbjct: 14 SGRCIPISWTCDLDDDCGDRSDE--SAS---------------------------CAYPT 44
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
P C N C+ W CD DNDCGD SDE C
Sbjct: 45 CFPLTQFTCNNGR-CININWRCDNDNDCGDNSDE--AGCSH 82
Score = 57.7 bits (140), Expect = 7e-11
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG-HKCVD 363
TC +QF C +G+CI C+ + DC D SDE C C + C +C++
Sbjct: 4 TCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCIN 60
Score = 56.9 bits (138), Expect = 1e-10
Identities = 21/38 (55%), Positives = 23/38 (60%)
Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
C C T+F C NG CI W CD DNDCGD+SDE
Sbjct: 40 CAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE 77
Score = 55.7 bits (135), Expect = 4e-10
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
TCPP+ CA+ C+ W CD D+DCGD SDE P F
Sbjct: 4 TCPPNQFSCAS-GRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFT 52
Score = 50.0 bits (120), Expect = 4e-08
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
+ +QF CNNG+CI+ + C+ ++DC D+SDE C+
Sbjct: 43 PTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDE-AGCS 81
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 71.9 bits (177), Expect = 7e-16
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
VDEC+ + C + + CEC GY+ K+C DIDEC E C+Q +C
Sbjct: 3 VDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSENM--CAQ---LC 57
Query: 406 HNRP 409
N P
Sbjct: 58 VNYP 61
Score = 52.3 bits (126), Expect = 5e-09
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 25/93 (26%)
Query: 309 CSSSQFRCNNGKCID----YHLVCNK-------ESDCEDDSDEPLHCNVDECAKVETNQC 357
CS C C + + C + CED +DEC+ N C
Sbjct: 6 CSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCED---------IDECS---ENMC 53
Query: 358 GHKCVDTLTGYYCECN--TGYKLLEDGKACTDI 388
CV+ GY C C+ G+KL +D K+C +
Sbjct: 54 AQLCVNYPGGYTCYCDGKKGFKLAQDQKSCEVV 86
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/79 (30%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 333 DCEDDSDEPLH--CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDE 390
D + +EC C + C D GY C C G++L+ + C DIDE
Sbjct: 14 DIPTTENLYFQGAMGTNECL-DNNGGCSYVCNDLKIGYECLCPDGFQLVAQRR-CEDIDE 71
Query: 391 CIEQPGVCSQYPAMCHNRP 409
C + P CSQ +C N
Sbjct: 72 C-QDPDTCSQ---LCVNLE 86
Score = 45.4 bits (108), Expect = 2e-06
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 343 HCN-VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
C +DEC + + C CV+ GY C+C G++L KAC
Sbjct: 65 RCEDIDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 106
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 72.3 bits (177), Expect = 1e-13
Identities = 37/144 (25%), Positives = 52/144 (36%), Gaps = 17/144 (11%)
Query: 386 TDIDECIEQPGVCSQYP----AMCHNRPCD--KDTEFACRNGHCIPKLWVCDFDNDCGDD 439
T + EC Y +C+ + D D F C NG I ++ CD NDCGD
Sbjct: 173 TSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ 232
Query: 440 SDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDE----LPQNCPLES 495
SDE C + + CIP C+G+ DC G DE + E
Sbjct: 233 SDE-------LCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEE 285
Query: 496 LGSVCNGVNDCKDNITSDETHARC 519
+ ++ + I S C
Sbjct: 286 TEILTADMDAERRRIKSLLPKLSC 309
Score = 70.3 bits (172), Expect = 6e-13
Identities = 44/280 (15%), Positives = 76/280 (27%), Gaps = 51/280 (18%)
Query: 315 RCNNGKCI---DYHLVCNKESDCEDDSDEPL---HCNVDECAKVETNQCGHKCVDTLTGY 368
RC G C+ Y N + C + EC T + +
Sbjct: 35 RCIEGTCVCKLPYQCPKNGTAVCATNRRSFPTYCQQKSLECLHPGTKFLNNGTCTAEGKF 94
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN-----GHC 423
G E G + + + +C +M ++ AC + G
Sbjct: 95 SVSLKHGNTDSE-GIVEVKLVDQDKTMFICKSSWSM-------REANVACLDLGFQQGAD 146
Query: 424 IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDG 483
+ + + + CR + C G D D
Sbjct: 147 TQRRFKLSDLSINSTECLHV--HCRGLETSLA----------ECTFTKRRTMGYQDFADV 194
Query: 484 SDEL-PQNCPLE-----------SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLK 531
+ P++ S C+G+NDC D SDE + C
Sbjct: 195 VCYTQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQ--SDELCCKA-----CQGKGFH 247
Query: 532 CANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNS 571
C + +C+ + C+G+ DC DE + +
Sbjct: 248 C-KSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEET 286
Score = 69.6 bits (170), Expect = 1e-12
Identities = 43/267 (16%), Positives = 73/267 (27%), Gaps = 36/267 (13%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
N + + + +C+ C + + T+ G V +
Sbjct: 60 NRRSFPTYCQQKSLECLHPGTKFLNNGTCTAEGKFSV-----SLKHGNTDSEGIVEVKLV 114
Query: 366 T--GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKD--TEFACRN- 420
C + + + E AC D+ Q G +Q + + CR
Sbjct: 115 DQDKTMFICKSSWSMREANVACLDLG---FQQGADTQRRFKLSDLSINSTECLHVHCRGL 171
Query: 421 ----GHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDG 476
C D D + + +C N + I + CDG
Sbjct: 172 ETSLAECTFTKRRTMGYQDFADVVCYTQKAD---SPMDDFFQC---VNGKYISQMKACDG 225
Query: 477 KDDCRDGSDELP-QNCPLESLG----------SVCNGVNDCKDNITSDETHARCPSNITC 525
+DC D SDEL + C + CNG DC DE +++
Sbjct: 226 INDCGDQSDELCCKACQGKGFHCKSGVCIPSQYQCNGEVDCITG--EDEVGCAGFASVAQ 283
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCG 552
+ A+ + CG
Sbjct: 284 EETEILTADMDAERRRIKSLLPKLSCG 310
Score = 47.2 bits (112), Expect = 1e-05
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH-KC 361
++ + F+C NGK I C+ +DC D SDE L C + + C C
Sbjct: 198 TQKADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDE-LCCK---ACQGKGFHCKSGVC 253
Query: 362 VDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
+ + E + E G A E + + A
Sbjct: 254 IPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLPK 306
Score = 35.3 bits (81), Expect = 0.053
Identities = 32/265 (12%), Positives = 59/265 (22%), Gaps = 64/265 (24%)
Query: 330 KESDCEDDSDEPLHCNVDE-----CAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKA 384
K + + C + C KV Q +C++ C C Y+ ++G A
Sbjct: 1 KVTYTSQEDLVEKKCLAKKYTHLSCDKV-FCQPWQRCIEGT----CVCKLPYQCPKNGTA 55
Query: 385 CTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPA 444
+ +P C ++ C+ + C +
Sbjct: 56 VCATN--------RRSFPTYCQ-----------QKSLECLHPGTKFLNNGTCTAEGK--- 93
Query: 445 YMCRQRNCTKGWERC-------PGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLG 497
+ ++ E KT + C W + C D +
Sbjct: 94 FSVSLKHGNTDSEGIVEVKLVDQDKTMFICKSSWSMREANVACLDLGFQQG---ADTQRR 150
Query: 498 SVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
+ ++ H C T + C G D D+
Sbjct: 151 FKLSDLSINSTECL----HVHCRGLET---------SLAECTFTKRRTMGYQDFADVVCY 197
Query: 558 ---------DPLHCQQRTCPQNSFR 573
D C
Sbjct: 198 TQKADSPMDDFFQCVNGKYISQMKA 222
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 68.0 bits (165), Expect = 4e-13
Identities = 30/190 (15%), Positives = 43/190 (22%), Gaps = 16/190 (8%)
Query: 379 LEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN--GHCIPKLWVCDFDNDC 436
+E+ D + + CD+ E CR CI L CD + DC
Sbjct: 23 IEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEH-ESECRGDVPECIHDLLFCDGEKDC 81
Query: 437 GDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPK-WLFCDGKDDCRDGSDELPQNCPLES 495
D SDE C G T C P L +
Sbjct: 82 RDGSDEDPETCSLNITHVGSSYTGLATWTSCEDLNPDHAIVTITAAHRKSFFPNRVWLRA 141
Query: 496 LGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMS 555
+ H S + + +G D +
Sbjct: 142 ------------TLSYELDEHDHTVSTTQLRGFYNFGKRELLLAPLKGQSEGYGVICDFN 189
Query: 556 DEDPLHCQQR 565
D H +
Sbjct: 190 LGDDDHADCK 199
Score = 53.4 bits (127), Expect = 3e-08
Identities = 24/188 (12%), Positives = 39/188 (20%), Gaps = 24/188 (12%)
Query: 303 NKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHK 360
N E C + C + +CI L C+ E DC D SDE + C
Sbjct: 48 NLEEHHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDE------------DPETCSLN 95
Query: 361 CVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRN 420
+ Y + I S +P +
Sbjct: 96 ITHVGSSYTGLATWTSCEDLNPDHA---IVTITAAHRKSFFPNRVW---LRATLSYELDE 149
Query: 421 GHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERC--PGKTNYRCIPKWLFCDGKD 478
+ G + C + K +
Sbjct: 150 HDHTVSTTQLRGFYNFGKRELLL--APLKGQSEGYGVICDFNLGDDDHADCKIVVPSSLF 207
Query: 479 DCRDGSDE 486
C + +
Sbjct: 208 VCAHFNAQ 215
Score = 49.5 bits (117), Expect = 7e-07
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 13/99 (13%)
Query: 473 FCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKC 532
D + ++L + +++ + +++ +++ + C
Sbjct: 16 LAKKLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDL--- 72
Query: 533 ANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNS 571
CDG+ DC D SDEDP C S
Sbjct: 73 ----------LFCDGEKDCRDGSDEDPETCSLNITHVGS 101
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 61.5 bits (150), Expect = 1e-12
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 8/52 (15%)
Query: 403 AMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTK 454
+ C+KD +F CRN CIP +W CD D+DC D SDE +C K
Sbjct: 1 GSGPAKECEKD-QFQCRNERCIPSVWRCDEDDDCLDHSDE-------DDCPK 44
Score = 53.4 bits (129), Expect = 7e-10
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 302 GNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCN 345
G+ C QF+C N +CI C+++ DC D SDE C
Sbjct: 1 GSGPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDE-DDCP 43
Score = 47.3 bits (113), Expect = 1e-07
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 519 CPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
C +C N C+ W CD D+DC D SDED
Sbjct: 2 SGPAKECEKDQFQCRNER-CIPSVWRCDEDDDCLDHSDED 40
Score = 46.5 bits (111), Expect = 2e-07
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
+ C K +C N RCIP CD DDC D SDE +CP
Sbjct: 3 GPAKECEKDQFQC---RNERCIPSVWRCDEDDDCLDHSDE--DDCP 43
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 61.5 bits (150), Expect = 3e-12
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKL-LEDGKACTDIDECIEQPGVCSQYPAM 404
+DEC +CV+T + C+C+ GY+ K C DIDEC P +C +
Sbjct: 3 IDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCRG--GV 60
Query: 405 CHNRP 409
CHN
Sbjct: 61 CHNTE 65
Score = 51.5 bits (124), Expect = 1e-08
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 21/89 (23%)
Query: 309 CSSSQFRCNNGKCI----DYHLVCNK--------ESDCEDDSDEPLHCNVDECAKVETNQ 356
C S C G+C+ D+ C++ +C D +DEC +
Sbjct: 6 CRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMD---------IDECQRDPLLC 56
Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
G C +T Y CEC G++L + AC
Sbjct: 57 RGGVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 29.6 bits (67), Expect = 0.63
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 386 TDIDECIEQPGVCSQYPAMCHNRP 409
TDIDEC P +C + C N P
Sbjct: 1 TDIDECRISPDLCGR--GQCVNTP 22
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 58.8 bits (143), Expect = 1e-11
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 407 NRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQR 450
+ C T+F C +G CIP+ W CD DNDCGD SDE C +
Sbjct: 2 SHSCS-STQFKCNSGRCIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 53.5 bits (129), Expect = 7e-10
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
+ +CSS+QF+CN+G+CI H C+ ++DC D SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36
Score = 51.1 bits (123), Expect = 5e-09
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
+ +C KC + C+ +W CDGDNDCGD SDE +C +
Sbjct: 2 SHSCSSTQFKCNSGR-CIPEHWTCDGDNDCGDYSDETHANCTNQ 44
Score = 45.4 bits (108), Expect = 5e-07
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 449 QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
+C+ +C + RCIP+ CDG +DC D SDE NC
Sbjct: 2 SHSCSSTQFKC---NSGRCIPEHWTCDGDNDCGDYSDETHANC 41
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 58.5 bits (142), Expect = 1e-11
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 408 RPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQ 449
C + EFAC N CI + W CD DNDC D+SDE +C Q
Sbjct: 4 PQC-QPGEFACANSRCIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 50.8 bits (122), Expect = 7e-09
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
C +F C N +CI C+ ++DC D+SDE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDE 37
Score = 50.4 bits (121), Expect = 1e-08
Identities = 21/41 (51%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQ 564
C P CAN+ C++ W CDGDNDC D SDE P C Q
Sbjct: 5 QCQPGEFACANSR-CIQERWKCDGDNDCLDNSDEAPALCHQ 44
Score = 44.6 bits (106), Expect = 1e-06
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 463 TNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
N RCI + CDG +DC D SDE P C
Sbjct: 14 ANSRCIQERWKCDGDNDCLDNSDEAPALC 42
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 61.6 bits (150), Expect = 2e-11
Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
C++ + + + C G++ DIDEC E PG+C
Sbjct: 79 CSLGKAWG-TPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG--G 135
Query: 404 MCHNRP 409
C N
Sbjct: 136 KCINTF 141
Score = 59.3 bits (144), Expect = 1e-10
Identities = 26/144 (18%), Positives = 40/144 (27%), Gaps = 20/144 (13%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
V+EC T CV+T Y C+C ++L C D
Sbjct: 3 VNECL-DPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLD------IRP 55
Query: 406 HNRP----CDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPG 461
C G + K C E N ++ CPG
Sbjct: 56 RGDNGDTACS------NEIGVGVSKASCCCSLGKAWGTPCEMCPAV---NTSEYKILCPG 106
Query: 462 KTNYRCIPKWLFCDGKDDCRDGSD 485
+R P + + D+C++
Sbjct: 107 GEGFRPNPITVILEDIDECQELPG 130
Score = 45.4 bits (108), Expect = 7e-06
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+DEC ++ G KC++T + C C TGY L ED + C
Sbjct: 122 IDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 60.6 bits (147), Expect = 2e-11
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 21/114 (18%)
Query: 305 ENSTCSSSQF-RCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCG--HKC 361
++S+C ++ RCN G ++ C+D ++ECA + CG C
Sbjct: 11 QDSSCVNATACRCNPGFSSFSEIITTPMETCDD---------INECATLSKVSCGKFSDC 61
Query: 362 VDTLTGYYCECNTGYKLL--------EDGKACTDIDECIEQPGVCSQYPAMCHN 407
+T Y C C+ GY+ + E C D+DEC C +C N
Sbjct: 62 WNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSS-TVCFN 114
Score = 47.9 bits (114), Expect = 7e-07
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYK-----LLEDGKACTDIDECIEQPGVCS 399
+ CA CV+ C CN G+ + + C DI+EC V
Sbjct: 1 DSRGCA--RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSC 55
Query: 400 QYPAMCHNRP 409
+ C N
Sbjct: 56 GKFSDCWNTE 65
Score = 46.7 bits (111), Expect = 2e-06
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 15/82 (18%)
Query: 315 RCNNG---KCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTGYY 369
C+ G E+ C+D VDEC+ +QC C +T+ Y
Sbjct: 71 VCSPGYEPVSGAKTFKNESENTCQD---------VDECS-SGQHQCDSSTVCFNTVGSYS 120
Query: 370 CECNTGYKLLEDGKACTDIDEC 391
C C G+K C
Sbjct: 121 CRCRPGWKPRHGIPNNQKDTVC 142
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 56.0 bits (136), Expect = 8e-11
Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDE 442
PC EF C +G CI W CD DC D SDE
Sbjct: 1 PCSAF-EFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 50.3 bits (121), Expect = 8e-09
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKESDCEDDSDE 340
CS+ +F C +G+CI C+ DC+D SDE
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDE 33
Score = 43.3 bits (103), Expect = 2e-06
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 525 CPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
C C + C+ W CDG DC D SDE
Sbjct: 2 CSAFEFHCLSGE-CIHSSWRCDGGPDCKDKSDE 33
Score = 39.5 bits (93), Expect = 6e-05
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 466 RCIPKWLFCDGKDDCRDGSDELPQNC 491
CI CDG DC+D SDE +NC
Sbjct: 13 ECIHSSWRCDGGPDCKDKSDE--ENC 36
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 56.8 bits (138), Expect = 1e-10
Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 6/64 (9%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
+DEC + +C++T Y CEC GY L G C D DEC + C
Sbjct: 5 MDECKE-PDVCKHGQCINTDGSYRCECPFGYIL--AGNECVDTDECSVGNPCGNG---TC 58
Query: 406 HNRP 409
N
Sbjct: 59 KNVI 62
Score = 36.4 bits (85), Expect = 0.002
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 20/79 (25%)
Query: 316 CNNGKCID----YHLVCNK-----ESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLT 366
C +G+CI+ Y C ++C D DEC+ V C + +
Sbjct: 14 CKHGQCINTDGSYRCECPFGYILAGNECVD---------TDECS-VGNPCGNGTCKNVIG 63
Query: 367 GYYCECNTGYKLLEDGKAC 385
G+ C C G++ C
Sbjct: 64 GFECTCEEGFE-PGPMMTC 81
Score = 26.0 bits (58), Expect = 9.5
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 3/26 (11%)
Query: 384 ACTDIDECIEQPGVCSQYPAMCHNRP 409
+ D+DEC E C N
Sbjct: 1 SAVDMDECKEPDVCKHG---QCINTD 23
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 60.3 bits (145), Expect = 2e-10
Identities = 27/167 (16%), Positives = 42/167 (25%), Gaps = 12/167 (7%)
Query: 284 HRGSTTVADMIRSVYLGSGNKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEP 341
+ + E + C F+C N +CI LVC+ DC + DE
Sbjct: 28 EAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDED 87
Query: 342 LHCNVDECAKVETNQCG----HKCVDTLTGYYCECNTGYKLLEDGKACTDIDECI----E 393
K G H C+ T K + A + + E
Sbjct: 88 PDVCDTSVVKAGNVFSGTSTWHGCLAREDHVTRITITASKRRKFFTARIWLRALVESELE 147
Query: 394 QPGVCSQYPAMCHNRPCDKDTEFACR--NGHCIPKLWVCDFDNDCGD 438
+ G + H VC F+ +
Sbjct: 148 RHGENVTSSFNAKGYYNFASRRLILLPTDDHDDHLAVVCSFNRGDNE 194
Score = 57.6 bits (138), Expect = 1e-09
Identities = 20/147 (13%), Positives = 35/147 (23%), Gaps = 6/147 (4%)
Query: 409 PCDKDTEFACR--NGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYR 466
+ F C CI L VCD DC + DE +C G T +
Sbjct: 51 THCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHG 110
Query: 467 CIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCP 526
C+ + D + + + + +
Sbjct: 111 CLAR---EDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSS-FNAKGYYNFA 166
Query: 527 PHHLKCANTNICVEPYWLCDGDNDCGD 553
L T+ + + N +
Sbjct: 167 SRRLILLPTDDHDDHLAVVCSFNRGDN 193
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 57.0 bits (138), Expect = 3e-10
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 305 ENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
+ +S C G + + ++ C+ C C
Sbjct: 17 QPLDQTSYLCVCAEG----FAPIPHEPHRCQMFC--------------NQTACPADCDPN 58
Query: 365 LTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
T CEC GY L +DG CTDIDEC E G CS +CHN P
Sbjct: 59 -TQASCECPEGYIL-DDGFICTDIDEC-ENGGFCSG---VCHNLP 97
Score = 38.9 bits (91), Expect = 6e-04
Identities = 14/90 (15%), Positives = 23/90 (25%), Gaps = 20/90 (22%)
Query: 303 NKENSTCSSSQFRCNNGKCIDYHLVCNK------ESDCEDDSDEPLHCNVDECAKVETNQ 356
+ ++ C+ C + C D +DEC
Sbjct: 42 CQMFCNQTACPADCDPN--TQASCECPEGYILDDGFICTD---------IDECE--NGGF 88
Query: 357 CGHKCVDTLTGYYCECNTGYKLL-EDGKAC 385
C C + + C C L + G C
Sbjct: 89 CSGVCHNLPGTFECICGPDSALAGQIGTDC 118
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 57.4 bits (139), Expect = 4e-10
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 20/119 (16%)
Query: 346 VDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMC 405
+DEC + C ++ + CEC++ L C + + V
Sbjct: 4 IDECE--SSPCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGR---- 57
Query: 406 HNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEP-AYMCRQRNCTKGWERCPGKT 463
C+ + A C C C KG+ R G
Sbjct: 58 ----CEININGATLKSQC------CSSLGAAWGSPCTLCQVDPI---CGKGYSRIKGTQ 103
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/95 (22%), Positives = 24/95 (25%), Gaps = 16/95 (16%)
Query: 315 RCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNT 374
C D N ++ TL C
Sbjct: 48 TCWQTVI-DGRCEININGATLKSQCC---SSLGAA---------WGSPCTLCQVDPICGK 94
Query: 375 GYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
GY G C DIDEC PGVC +C N
Sbjct: 95 GYSR-IKGTQCEDIDECEVFPGVCKN--GLCVNTR 126
Score = 42.7 bits (101), Expect = 5e-05
Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEP----------------LHC-NVDECA 350
T + N C+ C ++DEC
Sbjct: 52 TVIDGRCEININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECE 111
Query: 351 KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
CV+T + C+C +G L G+ C
Sbjct: 112 VFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 53.9 bits (130), Expect = 7e-10
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 521 SNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTC 567
TC P C T++CV WLCDGD DC D +DE
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNS 49
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT 453
+ C + F+C H C+P+ W+CD D DC D +DE N T
Sbjct: 2 SEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST 50
Score = 46.2 bits (110), Expect = 3e-07
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 305 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDEPLHCN 345
E TC S F C C+ +C+ + DC D +DE +
Sbjct: 3 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG 44
Score = 43.1 bits (102), Expect = 4e-06
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELP 488
+ C CPG + C+P+ CDG DC DG+DE
Sbjct: 2 SEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADESI 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 57.9 bits (139), Expect = 9e-10
Identities = 26/155 (16%), Positives = 41/155 (26%), Gaps = 6/155 (3%)
Query: 360 KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFAC- 418
+ +D L + T +E + I + G + CD+ E C
Sbjct: 5 EIIDKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEH-EHQCG 63
Query: 419 -RNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGK 477
+ CI KL+VCD NDC + DE C C +
Sbjct: 64 GDDPQCISKLFVCDGHNDCRNGEDE--KDCTLPTKAGDKFIGDV-CFDHCTKRRPEHMTL 120
Query: 478 DDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITS 512
+ D ++ S
Sbjct: 121 AFESSSIAAFFTPIADLHVHIEIESETDEDESEVS 155
Score = 47.5 bits (112), Expect = 3e-06
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 9/144 (6%)
Query: 303 NKENSTCSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECA------KVET 354
E+ +C + +C ++ +CI VC+ +DC + DE C + A V
Sbjct: 49 ELEDPSCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE-KDCTLPTKAGDKFIGDVCF 107
Query: 355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
+ C + + +T + + I+ E S+ D
Sbjct: 108 DHCTKRRPEHMTLAFESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYSFADH 167
Query: 415 EFACRNGHCIPKLWVCDFDNDCGD 438
V +FD D
Sbjct: 168 RLTIHPPEEDGLGLVGEFDGYNFD 191
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 54.1 bits (130), Expect = 1e-09
Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 8/80 (10%)
Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKT 463
+ C + F+C H C+P+ W+CD D DC D +DE N T G
Sbjct: 4 LEGKTCG-PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNST-----GSGSG 57
Query: 464 NYRCIPKWLFCDG-KDDCRD 482
+ + R
Sbjct: 58 SGSTEELRVRLASHLRKLRK 77
Score = 52.2 bits (125), Expect = 5e-09
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSFR 573
TC P C T++CV WLCDGD DC D +DE C NS
Sbjct: 8 TCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESI--AA--GCLYNSTG 53
Score = 44.1 bits (104), Expect = 4e-06
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 305 ENSTCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSDE 340
E TC S F C C+ +C+ + DC D +DE
Sbjct: 5 EGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADE 41
Score = 41.4 bits (97), Expect = 4e-05
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
+ C CPG + C+P+ CDG DC DG+DE
Sbjct: 4 LEGKTCGPSSFSCPG--THVCVPERWLCDGDKDCADGADE--SIAA 45
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 57.3 bits (139), Expect = 3e-09
Identities = 34/203 (16%), Positives = 72/203 (35%), Gaps = 16/203 (7%)
Query: 48 VAMDFHYKENRFYFADVAAKTIYR-SRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLD 106
+ ++ + +F A I + G + E + + L V +G +++ +
Sbjct: 25 ITSS---EDGKVWFTQHKANKISSLDQSGRIK-EFEVPTPDAKVMCLIVSSLGD-IWFTE 79
Query: 107 RHSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNF 165
+ ++ G + L P GIT G ++F+ N IGK+ DG
Sbjct: 80 NGANKIGKLSKKGGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLN-GDRIGKLTADG-TI 136
Query: 166 TRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFA 224
+ ++P +TL L++ + + I + GK + + P
Sbjct: 137 YEY-DLPNKGSYPAFITLG-SDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPV--G 192
Query: 225 LTLFED-HIYWTDWNTKSINRAD 246
+T D +++ + I R
Sbjct: 193 ITSGNDGALWFVEIMGNKIGRIT 215
Score = 30.0 bits (68), Expect = 1.9
Identities = 10/72 (13%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 176 AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVI-SGQKVPHVFALTLFEDHIYW 234
+ P +T ++++ + I+S+D G+ K + + ++ I++
Sbjct: 20 SGPYGITSSE-DGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVMCLIVSS-LGDIWF 77
Query: 235 TDWNTKSINRAD 246
T+ I +
Sbjct: 78 TENGANKIGKLS 89
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 51.2 bits (123), Expect = 6e-09
Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 12/58 (20%)
Query: 405 CHNRPCDKDTEFACRNGH-CIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPG 461
C +F C +G CI + CD DC D+SDE C R PG
Sbjct: 2 AMVLNC-TSAQFKCADGSSCINSRYRCDGVYDCRDNSDE-------AGCPT---RPPG 48
Score = 50.4 bits (121), Expect = 1e-08
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 520 PSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDE 557
+ C KCA+ + C+ + CDG DC D SDE
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
Score = 46.6 bits (111), Expect = 2e-07
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 4/46 (8%)
Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
NCT +C CI CDG DCRD SDE CP
Sbjct: 2 AMVLNCTSAQFKC--ADGSSCINSRYRCDGVYDCRDNSDE--AGCP 43
Score = 45.4 bits (108), Expect = 7e-07
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 305 ENSTCSSSQFRCNNGK-CIDYHLVCNKESDCEDDSDE 340
C+S+QF+C +G CI+ C+ DC D+SDE
Sbjct: 3 MVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDE 39
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 52.8 bits (127), Expect = 8e-09
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 306 NSTCSSSQFRCNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCG 358
+ C +G CID + C C+ + + C+ ++ C
Sbjct: 13 PLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQRE------VSFLNCS-LDNGGCT 65
Query: 359 HKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
H C++ + C C GYKL +D C +
Sbjct: 66 HYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 39.3 bits (92), Expect = 4e-04
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 10/69 (14%)
Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC---TDIDECIEQPGVCSQ 400
E C+D + + C+C +G+ +G+ C C G C+
Sbjct: 11 VLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGW----EGRFCQREVSFLNCSLDNGGCTH 66
Query: 401 YPAMCHNRP 409
Y C
Sbjct: 67 Y---CLEEV 72
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 50.3 bits (121), Expect = 9e-09
Identities = 21/42 (50%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Query: 402 PAMCHNRPCDKDTEFACR-NGHCIPKLWVCDFDNDCGDDSDE 442
P CH EF CR +G CIP W CD D DC D SDE
Sbjct: 1 PGGCH------TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 47.6 bits (114), Expect = 9e-08
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 524 TCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
C +C +C+ W CDGD DC D SDE
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEK 37
Score = 45.0 bits (107), Expect = 6e-07
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 307 STCSSSQFRCN-NGKCIDYHLVCNKESDCEDDSDE 340
C + +F+C +G CI C+ ++DC D SDE
Sbjct: 2 GGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
Score = 42.6 bits (101), Expect = 5e-06
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
C +C + + CIP CDG DC D SDE ++C
Sbjct: 4 CHTDEFQC--RLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 50.5 bits (121), Expect = 1e-08
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
C C + C C GY L ++GKAC
Sbjct: 11 CDQFCHEEQNSVVCSCARGYTLADNGKACIPTGPY 45
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 56.2 bits (135), Expect = 2e-08
Identities = 46/237 (19%), Positives = 77/237 (32%), Gaps = 25/237 (10%)
Query: 343 HC-NVDECAKV----ETNQCGHKCVDTLTGYYCE-CNTGYK-----------LLEDGKAC 385
HC ++DECA V + +CV+T G++C C Y+ + + C
Sbjct: 40 HCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVC 99
Query: 386 TDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAY 445
+ C ++ C ++ A C D + C + D CG+DSD +
Sbjct: 100 EPENPCKDKTHNCHKH-AECIYLGHFSDPMYKCEC----QTGYAGD-GLICGEDSDLDGW 153
Query: 446 MCRQRNCTKGWERCPGKTNYRCIPKWLFCD-GKDDCRDGSDELPQNCPLE-SLGSVCNGV 503
C K N +P D KD D D+ N + +
Sbjct: 154 PNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLF 213
Query: 504 NDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPL 560
N + + DE RC + + N + + +D + D P
Sbjct: 214 NPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPY 270
Score = 53.1 bits (127), Expect = 1e-07
Identities = 43/246 (17%), Positives = 69/246 (28%), Gaps = 32/246 (13%)
Query: 346 VDECAKVETNQC--GHKCVDTLTGYY--CECNTGYKLLEDGKACTDIDECIEQPGVCSQY 401
D C +N C G +C G + C G+ +G C D+DEC P +C
Sbjct: 3 PDGCL---SNPCFPGAQCSSFPDGSWSCGFCPVGFL--GNGTHCEDLDECALVPDICFST 57
Query: 402 --PAMCHNRP----CDK-------DTEFACRNGHCIPKLWVCDFDNDCGDDSD---EPAY 445
C N C + + VC+ +N C D + + A
Sbjct: 58 SKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAE 117
Query: 446 MCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVND 505
+ + +C +T Y G+D DG L C +
Sbjct: 118 CIYLGHFSDPMYKCECQTGYAGDG---LICGEDSDLDGWPNLNLVCATNATYHCIKDNCP 174
Query: 506 CKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQR 565
N ++ + N + E N D+D + +
Sbjct: 175 HLPNSGQED----FDKDGIGDACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDRCD 230
Query: 566 TCPQNS 571
CP
Sbjct: 231 NCPYVH 236
Score = 31.9 bits (72), Expect = 0.63
Identities = 40/205 (19%), Positives = 65/205 (31%), Gaps = 34/205 (16%)
Query: 327 VCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC- 385
VC E+ C+D + +C+ +C + + Y CEC TGY DG C
Sbjct: 98 VCEPENPCKDKTH---NCHKH-------AECIYLGHFSDPMYKCECQTGY--AGDGLICG 145
Query: 386 --TDIDECIEQPGVCS----------QYPAMCHNRPCDKDTEF---ACRNGHCIPKLWVC 430
+D+D VC+ P + ++ D D + AC + +
Sbjct: 146 EDSDLDGWPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDE 205
Query: 431 DFDNDCGDDSDEPAYM-----CRQRNCTKGWERCPGKTNYRCIP-KWLFCDGKDDCRDGS 484
+ + + Y R NC T+ DD +
Sbjct: 206 KDNCQLLFNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNER 265
Query: 485 DELPQNCPLESLGSVCNGVNDCKDN 509
D P + + +GV D DN
Sbjct: 266 DNCPYVYNTDQRDTDGDGVGDHCDN 290
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 55.0 bits (133), Expect = 2e-08
Identities = 35/223 (15%), Positives = 74/223 (33%), Gaps = 12/223 (5%)
Query: 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR 107
+ + + + + A I + E + + L + G +++ +
Sbjct: 20 ITVS---DKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVMCLTISSDGE-VWFTEN 75
Query: 108 HSKQLDVAELDGTNRK-TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFT 166
+ ++ G ++ TL P GIT P G ++F+ N IG+I DG
Sbjct: 76 AANKIGRITKKGIIKEYTLPNPDSAPYGITEGPN-GDIWFTEMN-GNRIGRITDDG-KIR 132
Query: 167 RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFAL 225
+ ++P+ +TL L++ + + I + G I P
Sbjct: 133 EY-ELPNKGSYPSFITLG-SDNALWFTENQNNAIGRITESGDITEFKIPTPASGPVGITK 190
Query: 226 TLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHV 268
+D +++ + I R + RP+ I
Sbjct: 191 GN-DDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITA 232
Score = 42.7 bits (101), Expect = 2e-04
Identities = 25/124 (20%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 124 TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
L P GIT+ G V+ + I I +DG T D A LT+
Sbjct: 9 NLTNQDTGPYGITVSDK-GKVWITQHK-ANMISCINLDG-KITEYPLPTPD-AKVMCLTI 64
Query: 184 DYFTERLYWADAHLDYIASVDLDGKHKHIVISGQ-KVPHVFALTLFEDHIYWTDWNTKSI 242
+++ + + I + G K + P+ I++T+ N I
Sbjct: 65 SS-DGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRI 122
Query: 243 NRAD 246
R
Sbjct: 123 GRIT 126
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 49.0 bits (117), Expect = 4e-08
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 346 VDECA-------KVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACT 386
+DECA + QC H C + + GY+C C GY+L ED +C
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 48.5 bits (116), Expect = 4e-08
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 522 NITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
++ C + C N C+ C+G +DCG+ +DED
Sbjct: 4 DVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADED 40
Score = 45.5 bits (108), Expect = 5e-07
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 447 CRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
+ C+ G+ C +C+P+ L C+G DDC + +DE NC
Sbjct: 2 SQDVKCSLGYFPCG--NITKCLPQLLHCNGVDDCGNQADE--DNC 42
Score = 44.3 bits (105), Expect = 1e-06
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 405 CHNRPCDKDTEFACRNG-HCIPKLWVCDFDNDCGDDSDE 442
+ C F C N C+P+L C+ +DCG+ +DE
Sbjct: 2 SQDVKCSLG-YFPCGNITKCLPQLLHCNGVDDCGNQADE 39
Score = 43.2 bits (102), Expect = 4e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 305 ENSTCSSSQFRCNNG-KCIDYHLVCNKESDCEDDSDE 340
++ CS F C N KC+ L CN DC + +DE
Sbjct: 3 QDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADE 39
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 47.7 bits (114), Expect = 1e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
C C + + C C GY L +D K+C +
Sbjct: 8 CDQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 45.6 bits (108), Expect = 6e-07
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 404 MCHNRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 442
+ C +F C +G C P+ W+CD DC D DE
Sbjct: 1 ISEFGSCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 44.0 bits (104), Expect = 2e-06
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 305 ENSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 340
E +C QFRC +G+C +C+ DC+D DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 43.2 bits (102), Expect = 3e-06
Identities = 15/41 (36%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 521 SNITCPPHHLKCA----NTNICVEPYWLCDGDNDCGDMSDE 557
+CPP +C+ C WLCDG DC D DE
Sbjct: 3 EFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 43
Score = 40.2 bits (94), Expect = 4e-05
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 446 MCRQRNCTKGWERC--PGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
+ +C G RC P + C P+ CDG DC DG DE C
Sbjct: 1 ISEFGSCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC 46
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 44.4 bits (105), Expect = 1e-06
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 407 NRPCDKDTEFACR-----NGHCIPKLWVCDFDNDCGDDSDE 442
+ C +F C +G C P+ W+CD DC D DE
Sbjct: 2 SSRCPPG-QFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 44.4 bits (105), Expect = 1e-06
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 306 NSTCSSSQFRC-----NNGKCIDYHLVCNKESDCEDDSDE 340
+S C QFRC +G+C +C+ DC+D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 44.0 bits (104), Expect = 2e-06
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
Query: 522 NITCPPHHLKCA----NTNICVEPYWLCDGDNDCGDMSDE 557
+ CPP +C+ C WLCDG DC D DE
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
Score = 41.7 bits (98), Expect = 1e-05
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 458 RCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
P + C P+ CDG DC DG DE C
Sbjct: 13 SEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG 45
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 48.6 bits (116), Expect = 2e-06
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 316 CNNGKCIDYH--LVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECN 373
+NG C D C E + E +EC T+ C H C+ Y C C
Sbjct: 14 LHNGSCQDSIWGYTCTCSPGYEGSNCE---LAKNECHPERTDGCQHFCLPGQESYTCSCA 70
Query: 374 TGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
GY+L ED K C D+C +
Sbjct: 71 QGYRLGEDHKQCVPHDQCACGVLTSEKRAP 100
Score = 30.8 bits (70), Expect = 0.99
Identities = 15/125 (12%), Positives = 25/125 (20%), Gaps = 28/125 (22%)
Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTN 464
C ++PC NG C + + C + NC C +
Sbjct: 8 CISQPC-------LHNGSCQDSI--WGYTCTCSPGYEG-------SNCELAKNECHPERT 51
Query: 465 YRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNIT 524
C + C G + C + G +
Sbjct: 52 DGC---------QHFCLPGQES--YTCS-CAQGYRLGEDHKQCVPHDQCACGVLTSEKRA 99
Query: 525 CPPHH 529
Sbjct: 100 PDLQD 104
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 46.1 bits (110), Expect = 2e-06
Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 22/94 (23%)
Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
N GKC D Y C + +CE + + C++D C C +
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRKL--CSLDNG------DCDQFCHEEQNSV 102
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQP----GVC 398
C C GY L ++G P +
Sbjct: 103 VCSCARGYTLADNG---KACIPTGPYPCGKQTLE 133
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 46.6 bits (109), Expect = 5e-06
Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 8/102 (7%)
Query: 298 YLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCE-------DDSDEPLHCNVDECA 350
Y + +G+CI +L + + C + DE E A
Sbjct: 82 YTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETA 141
Query: 351 KVETN-QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
C + Y C+C G+ + C
Sbjct: 142 CQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183
Score = 36.2 bits (82), Expect = 0.015
Identities = 24/176 (13%), Positives = 42/176 (23%), Gaps = 18/176 (10%)
Query: 316 CNNGKCID----YHLVCN-----KESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLT 366
C NG+ + + +CN + ++ +E + + +
Sbjct: 13 CXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVN 72
Query: 367 GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPK 426
Y C C GY L ED C + C C
Sbjct: 73 MYXCGCIEGYTLXEDTCVLDVCQYXNCGES------GECIVEYLSEIQSAGCS---CAIG 123
Query: 427 LWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRD 482
D + E A + G +C+ + F + C
Sbjct: 124 XVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLG 179
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 42.3 bits (100), Expect = 5e-06
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 415 EFACRNGH--CIPKLWVCDFDNDCGDDSDE 442
E +C CIP W CD +NDC DE
Sbjct: 5 EISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 40.4 bits (95), Expect = 3e-05
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 525 CPPHHLKCANTNI-CVEPYWLCDGDNDCGDMSDE 557
C H + C + C+ W CDG+NDC DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
Score = 38.9 bits (91), Expect = 9e-05
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 452 CTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCP 492
C C + +CIP CDG++DC G DE +NC
Sbjct: 1 CRIHEISCGAHST-QCIPVSWRCDGENDCDSGEDE--ENCG 38
Score = 38.5 bits (90), Expect = 1e-04
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 309 CSSSQFRC--NNGKCIDYHLVCNKESDCEDDSDE 340
C + C ++ +CI C+ E+DC+ DE
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 45.9 bits (109), Expect = 9e-06
Identities = 24/152 (15%), Positives = 40/152 (26%), Gaps = 43/152 (28%)
Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
N GKC D Y C + +CE + + C++D C C +
Sbjct: 51 QNQGKCKDGLGEYTCTCLEGFEGKNCELFTRK--LCSLDNG------DCDQFCHEEQNSV 102
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT----EFACRNGHCI 424
C C GY L ++G P C + ++ + +G
Sbjct: 103 VCSCARGYTLADNG---KACIPTGPYP---------CGKQTLERRKRSVAQATSSSGEA- 149
Query: 425 PKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGW 456
D+ D +
Sbjct: 150 -------PDSITWKPYDA----ADLDPTENPF 170
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 46.7 bits (111), Expect = 1e-05
Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 31/218 (14%)
Query: 92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT------------AIQDPRGITLHP 139
G ++ + L++ + + + +D + PR +
Sbjct: 93 GATINNTTQTLWFGNTVNSAVTA--IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD 150
Query: 140 GIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDY 199
VY S ++ I + DG N ++ L LD +RLY +A
Sbjct: 151 ATNTVYISGIGKESVIWVV--DGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNAD-GE 207
Query: 200 IASVDL-DGK--HKHIVISGQKVPHVFALTLFED--HIYWTDWNTKSINRADKFNGRDYR 254
+ ++D D K + ++ K ++L + TD + R+
Sbjct: 208 LITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKA---AEVLVVDTRNGN 264
Query: 255 VLRN-TTHRPYDIHVYHPLKGTTRHAWLTAHRGSTTVA 291
+L + +++P A+ HR + V+
Sbjct: 265 ILAKVAAPESLAV-LFNP---ARNEAY-VTHRQAGKVS 297
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 44.4 bits (105), Expect = 1e-05
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 344 CNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
+++EC C H C + + GY+C C Y L +D K C
Sbjct: 115 TDINECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCGV 158
Score = 29.0 bits (65), Expect = 2.3
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 4/48 (8%)
Query: 506 CKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGD 553
N +D C C+ C Y+L D +CG
Sbjct: 115 TDINECTDFVDVPCSHFCNNFIGGYFCS----CPPEYFLHDDMKNCGV 158
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 41.4 bits (98), Expect = 1e-04
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 25/92 (27%)
Query: 317 NNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTG 367
N+ C+D + +C CE N DECA ++ C H +C+D +
Sbjct: 55 NDATCLDQIGEFQCICMPGYEGVHCEV--------NTDECA---SSPCLHNGRCLDKINE 103
Query: 368 YYCECNTGYKLLEDGKAC-TDIDECIEQPGVC 398
+ CEC TG+ G C D+ ++ +
Sbjct: 104 FQCECPTGFT----GHLCQVDLHHILDAQKMV 131
Score = 41.4 bits (98), Expect = 1e-04
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 345 NVDECAKVETNQCGH--KCVDTLTGYYCECNTGYKLLEDGKAC-TDIDECIEQP 395
+VDEC+ N C H KC++TL + C+C GY G C D++EC+ P
Sbjct: 4 DVDECSL-GANPCEHAGKCINTLGSFECQCLQGYT----GPRCEIDVNECVSNP 52
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 41.5 bits (98), Expect = 1e-04
Identities = 26/103 (25%), Positives = 31/103 (30%), Gaps = 26/103 (25%)
Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL-TG 367
N G C D Y C +CE D+ + E C C D T
Sbjct: 56 QNGGSCKDQLQSYICFCLPAFEGRNCETHKDD---QLICVN---ENGGCEQYCSDHTGTK 109
Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPC 410
C C+ GY LL DG +E P C P
Sbjct: 110 RSCRCHEGYSLLADG---VSCTPTVEYP---------CGKIPI 140
Score = 40.8 bits (96), Expect = 2e-04
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 26/109 (23%)
Query: 324 YHLVCNKESDCEDDSDEP-----LHC--NVDECAKVETNQC--GHKCVDTLTGYYCECNT 374
C+ E E D + D+CA ++ C G C D L Y C C
Sbjct: 18 KEEQCSFEEAREIFKDAERTKLFWISYSDGDQCA---SSPCQNGGSCKDQLQSYICFCLP 74
Query: 375 GYKLLEDGKAC-TDIDECIEQP---GVCSQYPAMCHNRPCDKDTEFACR 419
++ G+ C T D+ + G C QY C + T+ +CR
Sbjct: 75 AFE----GRNCETHKDDQLICVNENGGCEQY---CSDHT---GTKRSCR 113
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 43.5 bits (102), Expect = 1e-04
Identities = 23/199 (11%), Positives = 56/199 (28%), Gaps = 17/199 (8%)
Query: 54 YKENRFYFADVAAKTIYRSRVGSTEKERVI---RHDSHGLEGLAVDWVGRKLYWLDRHSK 110
+ + Y + I+ + E I D + G+ +Y S
Sbjct: 92 LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNC-WSY 150
Query: 111 QLDVAELDGTNRKTLKTAI--QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRI 168
Q + ++D K + P + + ++ + + G + + RI
Sbjct: 151 QNRILKIDTETDKVVDELTIGIQPTSLVMDKY-NKMWTIT-DGGYEGSPYGYEAPSLYRI 208
Query: 169 LTHEDDI---------AWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKV 219
+ WP+ + L+ + LYW + + + + +
Sbjct: 209 DAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTK 268
Query: 220 PHVFALTLFEDHIYWTDWN 238
+ + +Y D
Sbjct: 269 YYGLTVNPNNGEVYVADAI 287
Score = 37.7 bits (87), Expect = 0.008
Identities = 14/77 (18%), Positives = 27/77 (35%)
Query: 92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNL 151
+ ++ LYW++ ++ V R L+ G+T++P G VY +
Sbjct: 229 EVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAID 288
Query: 152 QAYIGKIGMDGSNFTRI 168
G + I
Sbjct: 289 YQQQGIVYRYSPQGKLI 305
Score = 30.8 bits (69), Expect = 1.2
Identities = 17/171 (9%), Positives = 46/171 (26%), Gaps = 9/171 (5%)
Query: 89 GLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQDPRGITLHPGIGYVYFSS 148
G ++ + + +S + +++ T PR I Y +
Sbjct: 43 GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSD-EKAYVTQ 101
Query: 149 WNLQAYIGKIGMDGSNFT---RILTHEDDIAWPNALTLDYFTERLYWADAHLD-YIASVD 204
I I + + I + D+ + + + + +Y I +D
Sbjct: 102 IW-DYRIFII--NPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKID 158
Query: 205 LDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRV 255
+ ++ P + + ++ + YR+
Sbjct: 159 TETDKVVDELTIGIQPTSLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRI 208
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen,
hydrolase, glycoprotein, hydroxylation, phosphoprotein,
sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo
sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E
3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Length = 59
Score = 39.0 bits (91), Expect = 2e-04
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 357 CGHKCVDTL-TGYYCECNTGYKLLEDGKACTDIDEC 391
C C ++ C C GY+L E+ K+C
Sbjct: 9 CEQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF 44
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease
activation, R drug design, substrate-assisted catalysis,
hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB:
1klj_L 1jbu_L 1ygc_L*
Length = 69
Score = 38.6 bits (90), Expect = 2e-04
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 346 VDECAKVETNQCGHKCVDTLTG-YYCECNTGYKLLEDGKACTDIDEC 391
C E C C D C C+ GY LL DG +CT E
Sbjct: 5 QLICV-NENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 50
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 42.5 bits (100), Expect = 3e-04
Identities = 33/219 (15%), Positives = 66/219 (30%), Gaps = 25/219 (11%)
Query: 91 EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQDPRGITLHPGIGYVYFSS 148
+G+AV G K+Y + S + V +D + T P GI ++P Y +
Sbjct: 161 KGIAVTPDGTKVYVANFDSMSISV--IDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVT- 217
Query: 149 WNLQAYIGKIGM-DGSNFT---RILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASVD 204
N+ Y + M D RI P + + +++Y A + + ++ +D
Sbjct: 218 -NVDKYFNTVSMIDTGTNKITARIPVG----PDPAGIAVTPDGKKVYVALSFXNTVSVID 272
Query: 205 LDGKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPY 264
++ K P+ + + + +
Sbjct: 273 TATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNIT----------SGYIFLSE 322
Query: 265 DIHVYHPLKGTTRHAWLTAHRGSTTVADMIRSVYLGSGN 303
+ K T W S+ + Y +G
Sbjct: 323 PVQFTDLSKDATEWKWDFGDGSSSKKQN-PTHTYSETGI 360
Score = 41.7 bits (98), Expect = 5e-04
Identities = 38/212 (17%), Positives = 79/212 (37%), Gaps = 26/212 (12%)
Query: 92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT--AIQDPRGITLHPGIGYVYFSSW 149
G + G K+Y + HS + + +D + T A P+G+ + P VY ++
Sbjct: 36 GAVISPDGTKVYVANAHSNDVSI--IDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM 93
Query: 150 NLQAYIGKIGMDGSNFTRILTHEDDIA---WPNALTLDYFTERLYWADAHLDYIASVDLD 206
+ + I D ++ T T + P L L ++LY + ++ ++
Sbjct: 94 A-SSTLSVI--DTTSNTVAGT----VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV 146
Query: 207 GKHKHIVISGQKVPHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR--NTTHRPY 264
K +S + P A+T +Y ++++ SI + V+ P
Sbjct: 147 TKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSI---SVIDTVTNSVIDTVKVEAAPS 203
Query: 265 DIHVYHPLKGTTRHAWLT---AHRGSTTVADM 293
I +P A++T + + ++ D
Sbjct: 204 GI-AVNP---EGTKAYVTNVDKYFNTVSMIDT 231
Score = 39.4 bits (92), Expect = 0.003
Identities = 41/259 (15%), Positives = 86/259 (33%), Gaps = 28/259 (10%)
Query: 57 NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL--EGLAVDWVGRKLYWLDRHSKQLDV 114
+ Y A+ + + + T VI G +G+AV G+++Y + S L V
Sbjct: 44 TKVYVANAHSNDVS---IIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSV 100
Query: 115 AELDGTNRKTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTH 171
+D T+ T + + P G+ L P +Y ++ + I + I T
Sbjct: 101 --IDTTSNTVAGT-VKTGKSPLGLALSPDGKKLYVTNNG-DKTVSVI--NTVTKAVINTV 154
Query: 172 EDDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVFALTLFEDH 231
P + + ++Y A+ I+ +D + + P A+
Sbjct: 155 SVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTK 213
Query: 232 IYWTDWNTKSINRADKFNGRDYRVLRN--TTHRPYDIHVYHPLKGTTRHAWLT-AHRGST 288
Y T+ + N + ++ P I P + ++ + +
Sbjct: 214 AYVTNVDKYF-NTVSMIDTGTNKITARIPVGPDPAGI-AVTP---DGKKVYVALSFXNTV 268
Query: 289 TVADM-----IRSVYLGSG 302
+V D ++ +G
Sbjct: 269 SVIDTATNTITATMAVGKN 287
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 40.4 bits (95), Expect = 3e-04
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 24/101 (23%)
Query: 316 CNNGKCID----YHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGY 368
N G C D Y C +CE D+ + C C
Sbjct: 57 LNGGLCKDDINSYECWCQVGFEGKNCELDATC---NIKNGR-------CKQFCKTGADSK 106
Query: 369 Y-CECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNR 408
C C TGY+L D K + P C ++ H+
Sbjct: 107 VLCSCTTGYRLAPDQK---SCKPAVPFP--C-GRVSVSHSP 141
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase,
structural genomics, PSI protein structure initiative;
2.01A {Deinococcus radiodurans}
Length = 296
Score = 41.6 bits (98), Expect = 4e-04
Identities = 27/171 (15%), Positives = 53/171 (30%), Gaps = 26/171 (15%)
Query: 56 ENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVA 115
+ F+DV + + H SH G ++ G L ++L+
Sbjct: 39 RSAVIFSDVRQNRTW--AWSDDGQLSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLERQ 95
Query: 116 ELDGTNRKTLKTAIQDPRG-----ITLHPGIGYVYFSS------WNLQAYIGKIGMDGSN 164
G +++ + + + + L P G ++FS + Y G++ + G
Sbjct: 96 REPGGEWESIADSFEGKKLNSPNDVCLAPD-GSLWFSDPTYGIDKPEEGYGGEMELPGRW 154
Query: 165 FTRI------LTHEDDIAWPN--ALTLDYFTERLYWADAHLDYIASVDLDG 207
R+ D PN A L +D + L+
Sbjct: 155 VFRLAPDGTLSAPIRDRVKPNGLAFLPS---GNLLVSDTGDNATHRYCLNA 202
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex,
hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1
PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Length = 53
Score = 37.8 bits (88), Expect = 4e-04
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 357 CGHKCVDTL-TGYYCECNTGYKLLEDGKACTDIDEC 391
C C D T C C+ GY LL DG +CT E
Sbjct: 9 CEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEY 44
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 41.3 bits (97), Expect = 6e-04
Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 16/123 (13%)
Query: 370 CECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWV 429
C TGY+LL+ ++ G + C C + +G +
Sbjct: 43 IFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSIVDCGPPDD--LPSGRVEY---I 97
Query: 430 CDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQ 489
+ Y C + T Y C DG G LP
Sbjct: 98 TGPGVTTYKAVIQ--YSCEETFYTM----KVNDGKYVCE-----ADGFWTSSKGEKSLPV 146
Query: 490 NCP 492
P
Sbjct: 147 CEP 149
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 40.9 bits (95), Expect = 7e-04
Identities = 12/58 (20%), Positives = 15/58 (25%), Gaps = 5/58 (8%)
Query: 344 CNVDECAKVETN--QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCS 399
CA C D TG+ C C Y +G+ C G
Sbjct: 3 LAQQTCANNRHQCSVHAE-CRDYATGFCCRCVANYT--GNGRQCVAEGSPQRVNGKVK 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 7e-04
Identities = 62/440 (14%), Positives = 127/440 (28%), Gaps = 116/440 (26%)
Query: 17 PWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGS 76
+L+ K R S+ Y L N + Y +R + + R
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA- 150
Query: 77 TEKERVIRHDSHGLEG-----LAVDWV---------GRKLYWLDRHSKQLDVAELDGTNR 122
+ V+ G+ G +A+D K++WL+ K + E
Sbjct: 151 ---KNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN--LKNCNSPETVLEML 202
Query: 123 KTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR---ILTHEDDIAWPN 179
+ L I DP + + ++QA + ++ + + +L ++ N
Sbjct: 203 QKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVL---LNV-Q-N 255
Query: 180 ALTLDYF--------TERLYWADAHL-DYIAS-----VDLDGKH-------------KHI 212
A + F T R + D++++ + LD K++
Sbjct: 256 AKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 213 VISGQKVPHV------FALTLF-----EDHIYWTDWNTKSINRADKFNGRDYRVLRNTTH 261
Q +P L++ + W +W + ++ VL +
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371
Query: 262 R---------PYDIHVYHPLKGTTRHAWLTAHRGSTTVADMI------RSVYLGSGNKEN 306
R P H+ P W + ++ S L +
Sbjct: 372 RKMFDRLSVFPPSAHI--PTI-LLSLIWF---DVIKSDVMVVVNKLHKYS--LVEKQPKE 423
Query: 307 STCSSSQFRCNNGKCI-DYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCV-DT 364
ST S I +L E + +++ LH ++ + + +
Sbjct: 424 STIS-----------IPSIYL----ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 365 LTGYYCECNTGYKLLEDGKA 384
L Y+ + G+ L
Sbjct: 469 LDQYFYS-HIGHHLKNIEHP 487
Score = 41.0 bits (95), Expect = 0.001
Identities = 54/317 (17%), Positives = 100/317 (31%), Gaps = 96/317 (30%)
Query: 25 YYVRNMSLDATQYSLVHQDLLNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIR 84
++ +M + ++ ++D+L+V F +N F DV +S + E + +I
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAF--VDN-FDCKDVQDMP--KSILSKEEIDHIIM 56
Query: 85 HDSHGLEGLAVDWVGRKLYW--LDRHSKQLD--VAELDGTNRKTLKTAIQ----DPRGIT 136
+ G +L+W L + + + V E+ N K L + I+ P +T
Sbjct: 57 -SKDAVSGT------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 137 LHPGIGYVY-----------FSSWNL------------------QAYIGKIGMDGS---- 163
Y+ F+ +N+ + G+ GS
Sbjct: 110 ----RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 164 -------NFTRILTHEDDIAWPNALTL------DYFTERL--YWADAHLDYIASVDLDGK 208
++ + I W L L + E L ++ + D
Sbjct: 166 VALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 209 HKHIVISGQKV--------PHVFALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTT 260
K + S Q P+ L L ++ N K+ + FN ++L TT
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL-LVLLNV----QNAKAW---NAFNLS-CKILL-TT 272
Query: 261 HRPYDIHVYHPLKGTTR 277
R V L T
Sbjct: 273 -R--FKQVTDFLSAATT 286
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 41.0 bits (95), Expect = 0.001
Identities = 36/240 (15%), Positives = 60/240 (25%), Gaps = 33/240 (13%)
Query: 310 SSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQ--CGHKCVDTLTG 367
S + C G + + C+ +S P N C K + + +G
Sbjct: 705 ESIELTCPKG----FVVAGPSRYTCQGNSWTPPISNSLTCEKDTLTKLKGHCQLGQKQSG 760
Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKL 427
C C + + + D+ P C K C N + L
Sbjct: 761 SECICMSPEE--DCSHHSEDLCVFDTDSNDYFTSP------AC-KFLAEKCLNNQQLHFL 811
Query: 428 WVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDEL 487
+ C D + R R + ++ Y W C L
Sbjct: 812 HIG----SCQDGRQLEWGLERTRLSSNSTKKESC--GYDTCYDWEKCSA--STSKCVCLL 863
Query: 488 PQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDG 547
P C C + T + C ++CAN + + C
Sbjct: 864 PPQCFKGGNQLYCVKMGSSTSEKTLNI----------CEVGTIRCANRKMEILHPGKCLA 913
Score = 38.3 bits (88), Expect = 0.007
Identities = 35/168 (20%), Positives = 56/168 (33%), Gaps = 24/168 (14%)
Query: 307 STCSSSQFRCNNG------KCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETN----- 355
++CS + CN+G + + + E CN C
Sbjct: 12 TSCSKT---CNSGTQSRHRQIVVDKYYQENFCEQICSKQETRECNWQRCPINCLLGDFGP 68
Query: 356 --QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKD 413
C + + G+ CT QP + S+ C D
Sbjct: 69 WSDCDPCIEKQSKVRSVLRPSQF----GGQPCTA-PLVAFQPCIPSKL---CKIEEADCK 120
Query: 414 TEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPG 461
+F C +G CI + C+ +NDCGD+SDE + CT+ + P
Sbjct: 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIPS 168
Score = 32.2 bits (72), Expect = 0.59
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQC 357
++FRC++G+CI L CN E+DC D+SDE + N
Sbjct: 115 EEADCKNKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPI 166
Score = 31.8 bits (71), Expect = 0.75
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 501 NGVNDCKDNITSDE--THARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDED 558
G C + + + ++ + ++ C+ C+G+NDCGD SDE
Sbjct: 91 FGGQPCTAPLVAFQPCIPSKLCKIEEADCKNKFRCDSGRCIARKLECNGENDCGDNSDER 150
Query: 559 PLHCQQRTCPQN 570
+ C +
Sbjct: 151 DCGRTKAVCTRK 162
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 40.3 bits (94), Expect = 0.002
Identities = 33/228 (14%), Positives = 64/228 (28%), Gaps = 25/228 (10%)
Query: 57 NRFYFADVAAKTIYRSRVGSTEKERVI----RHDSHGLEGLAVDWVGRKLYWLDRHSKQL 112
R + + + + S + R+ G +L+ + +
Sbjct: 134 TRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV 193
Query: 113 DVAELDGTNRK---TLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRIL 169
V D T+ + + + P VY S+W I I D I
Sbjct: 194 HV--FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWI-SEDISVI--DRKTKLEIR 248
Query: 170 THEDDIAWPNALTLDYFTERLYWADAHLDYIASVD-----LDGKHKHIV--ISGQKVPHV 222
+ P L L + LY A S + ++ I
Sbjct: 249 KTDKIGL-PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRH 307
Query: 223 FALTLFEDHIYWTDWNTKSINRADKFNGRDYRVLR--NTTHRPYDIHV 268
E+ IY +D I + ++ ++ +V + +P I +
Sbjct: 308 IVSGNTENKIYVSDMCCSKI---EVYDLKEKKVQKSIPVFDKPNTIAL 352
Score = 32.2 bits (73), Expect = 0.49
Identities = 30/170 (17%), Positives = 47/170 (27%), Gaps = 22/170 (12%)
Query: 57 NRFYFADVAAKTIYRSR----VGSTEKERVIRHDSHGLE--GLAVDWVGRKLYWLDRHSK 110
Y A +A + S +KE++I + K+Y D
Sbjct: 266 KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCS 325
Query: 111 QLDVAELDGTNRKTLKTAI---QDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTR 167
+ D +K K+ I P I L P Y+Y S G +
Sbjct: 326 --KIEVYDLKEKKVQKS-IPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK 382
Query: 168 I-------LTHEDDI---AWPNALTLDYFTERLYWADAHLDYIASVDLDG 207
+ T ++ P L + L +D I DG
Sbjct: 383 VYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease
inhibitor, protease, GLYC secreted, serine protease
inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo
sapiens}
Length = 283
Score = 39.7 bits (93), Expect = 0.002
Identities = 18/57 (31%), Positives = 24/57 (42%)
Query: 347 DECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPA 403
+EC T+ C H C+ Y C C GY+L ED K C D+C +
Sbjct: 3 NECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGVLTSEKRAP 59
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus
aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Length = 333
Score = 39.3 bits (92), Expect = 0.002
Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 19/183 (10%)
Query: 55 KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKL---YWLDRHSKQ 111
++ + + DV I++ + E +R + + GR + +
Sbjct: 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGG 113
Query: 112 LDVAELDGTNRKTLKTAIQDPRG---ITLHPGIGYVYFSSWNLQAYIGK-----IGMDGS 163
+ A +G N + + + + G YF+ + + + D
Sbjct: 114 IFAATENGDNLQDIIEDLSTAYCIDDMVFDSK-GGFYFTDFRGYSTNPLGGVYYVSPDFR 172
Query: 164 NFTRILTHEDDIAWPN--ALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISGQKVPH 221
T I+ +I+ N AL+ D L+ + + + + L+ I G +P+
Sbjct: 173 TVTPII---QNISVANGIALSTDEKV--LWVTETTANRLHRIALEDDGVTIQPFGATIPY 227
Query: 222 VFA 224
F
Sbjct: 228 YFT 230
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 39.4 bits (92), Expect = 0.003
Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 15/128 (11%)
Query: 368 YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKL 427
+ C GY+L+E + + G + C + C + NG
Sbjct: 28 FIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRCKIKDCGQPRN--LPNGD----- 80
Query: 428 WVCDFDNDCGDDSDEPAYMCRQ---RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGS 484
+ Y C + + T+ R + Y C G
Sbjct: 81 FRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGSRESEQGVYTCTA-----QGIWKNEQKG 135
Query: 485 DELPQNCP 492
+++P+ P
Sbjct: 136 EKIPRCLP 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 39.0 bits (91), Expect = 0.003
Identities = 17/188 (9%), Positives = 51/188 (27%), Gaps = 15/188 (7%)
Query: 76 STEKERVIRHDSHGL--EGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQ--- 130
E +V+ + + + + + ++ K + T I
Sbjct: 70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFIST-IPIPY 128
Query: 131 DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDI----AWPNALTLDYF 186
D GI + P + + + + + + P +T
Sbjct: 129 DAVGIAISPNGNGLILIDRSSANTVRRF--KIDADGVLFDTGQEFISGGTRPFNITFTPD 186
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIVISGQKV---PHVFALTLFEDHIYWTDWNTKSIN 243
+ A+ + I ++ +++ P ++ +Y +T +
Sbjct: 187 GNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVF 246
Query: 244 RADKFNGR 251
++ +G
Sbjct: 247 NFNQLSGT 254
Score = 37.1 bits (86), Expect = 0.014
Identities = 29/248 (11%), Positives = 57/248 (22%), Gaps = 24/248 (9%)
Query: 57 NRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLE--GLAVDWVGRKLYWLDRHSKQLDV 114
N + + I ST+ ++ + G + A+ + + L
Sbjct: 10 NFGIVVEQHLRRIS---FFSTDTLEILNQITLGYDFVDTAITSDCSNVVVTSDFCQTLVQ 66
Query: 115 AELDGTNRKTLKT--AIQDPRGITLHPGIGYVYFSSWNL-QAYIGKIGMDGSNFTRILTH 171
E K + + + P + + + I T
Sbjct: 67 IETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY--SFLKNKFISTI 124
Query: 172 EDDIAWPNALTLDYFTERLYWADAHLDYIASV-DLD-----GKHKHIVISGQKVPHVFAL 225
+ + L D +D ISG P
Sbjct: 125 PIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITF 183
Query: 226 TLFEDHIYWTDWNTKSINRADKFNGRDYRVLR--NTTHRPYDIHVYHPLKGTTRHAWLTA 283
T + + + SI + N + +L T + P I V +
Sbjct: 184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVV-SR---DGSTVY-VL 238
Query: 284 HRGSTTVA 291
+ V
Sbjct: 239 TESTVDVF 246
Score = 31.3 bits (71), Expect = 0.89
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 13/128 (10%)
Query: 92 GLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKTLKT-----AIQDPRGITLHPGIGYVYF 146
+ G + + + + L+ N + + P I + VY
Sbjct: 180 NITFTPDGNFAFVANLIGNSIGI--LETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYV 237
Query: 147 SSWN------LQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYI 200
+ + G + S +L + N + L+ +L+ + +
Sbjct: 238 LTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL 297
Query: 201 ASVDLDGK 208
+ GK
Sbjct: 298 KVFTISGK 305
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 39.1 bits (91), Expect = 0.004
Identities = 18/124 (14%), Positives = 28/124 (22%), Gaps = 18/124 (14%)
Query: 377 KLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKD------TEFACRNGHCIPKLWVC 430
K L + + +E C N D++ G+C
Sbjct: 45 KALSKHQDFNSAVQLVENF---------CRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEE 95
Query: 431 DFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLF-CDGKDDCRDGSDELPQ 489
+ + GD DE + R N C + S E
Sbjct: 96 AVEEETGDGLDEDS--DRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKT 153
Query: 490 NCPL 493
L
Sbjct: 154 EREL 157
Score = 34.5 bits (79), Expect = 0.11
Identities = 16/104 (15%), Positives = 22/104 (21%), Gaps = 7/104 (6%)
Query: 473 FCDGKDDCRDGSDELPQNCPLESLGSVCN-----GVNDCKDNITSDETHARCPSNITCPP 527
FC D +G P + N + D DE R T
Sbjct: 63 FCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETGDG--LDEDSDRAIEGATATS 120
Query: 528 HHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNS 571
+ N C S ED + +
Sbjct: 121 EYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDG 164
Score = 32.5 bits (74), Expect = 0.39
Identities = 9/123 (7%), Positives = 23/123 (18%), Gaps = 6/123 (4%)
Query: 332 SDCEDDSDEPLHCNVDECAKVETNQC--GHKCVDTLTGYYCECNTGYKLLEDGKACTDID 389
+ + + H + + ++ N C + + Y + + ++
Sbjct: 40 ASAQAKALS-KHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVE 98
Query: 390 ECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKL-WVCDFDNDCGDDSDEPAYMCR 448
E + N C S E
Sbjct: 99 EETGDG--LDEDSDRAIEGATATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERE 156
Query: 449 QRN 451
Sbjct: 157 LLE 159
Score = 29.8 bits (67), Expect = 2.8
Identities = 11/101 (10%), Positives = 25/101 (24%), Gaps = 16/101 (15%)
Query: 474 CDGKDDCRDGSDELPQNCPLESLG--SVCNGVNDCKDNITSDETHARCPSNITCPPHHLK 531
C + + Q+ + C + ++ + C
Sbjct: 36 CLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVW-------CY---VAGK---- 81
Query: 532 CANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
+ C Y + + GD DED + + +
Sbjct: 82 PGDFGYCDLNYCEEAVEEETGDGLDEDSDRAIEGATATSEY 122
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 37.2 bits (86), Expect = 0.005
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 345 NVDEC--AKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
++DEC A E C H C + L G+YC C GY L + + C++
Sbjct: 123 DIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.006
Identities = 64/409 (15%), Positives = 119/409 (29%), Gaps = 148/409 (36%)
Query: 1 MPGWDESTCKRRDSIKPWLIFSNKYYVRNMSLDATQYSLVHQDLLNVVAMDFHYK----- 55
+ +++T + + I K Y+ + + L + + +
Sbjct: 108 LLQENDTTLVKTKEL----I---KNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 56 ----ENRFYFADVAA--KTIYRSRVGSTEKERVIRHDSHGLEGLA---VDWVGRKLY--- 103
YF ++ +T Y V +I+ + L L +D K++
Sbjct: 161 GGQGNTDDYFEELRDLYQT-YHVLV-----GDLIKFSAETLSELIRTTLDA--EKVFTQG 212
Query: 104 -----WLDRHSK--------------------QL----DVAELDGTNRKTLKTAIQDPRG 134
WL+ S QL A+L G L++ ++ G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK---G 269
Query: 135 ITLHPG--IGYVYFS---SWN------LQA-----YIG--------KIGMDGSNFTRILT 170
T H + V + SW +A +IG + S L
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE 329
Query: 171 HEDDIAWP----NALTLDYFTERLYWADAHLD-----YIASVDLDGKHKHIVISGQKVPH 221
+ + + P + LT + + + ++HL I+ V+ G K++V+SG
Sbjct: 330 NNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--G-AKNLVVSG----P 382
Query: 222 VFALTLFEDHIYWTDWNTKSINRAD----KFNGR----DYRVLRNTT--HRPY------- 264
+L + K+ + D F+ R R L + H
Sbjct: 383 PQSLYGLNLTLR----KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 265 -----------------DIHVYHPLKGTTRHAWLTAHRGSTT--VADMI 294
I VY G+ L GS + + D I
Sbjct: 439 INKDLVKNNVSFNAKDIQIPVYDTFDGSD----LRVLSGSISERIVDCI 483
Score = 30.0 bits (67), Expect = 3.0
Identities = 33/177 (18%), Positives = 52/177 (29%), Gaps = 68/177 (38%)
Query: 2 PGWDEST---CKRRDSIKPWLIFSNKYYVRNMSLDATQYSLV-----HQDLLN----VVA 49
G D+S +R K FSN++ L H LL ++
Sbjct: 400 SGLDQSRIPFSER----KL--KFSNRF-------------LPVASPFHSHLLVPASDLIN 440
Query: 50 MDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRK-LYW---- 104
D F D+ +Y T +R S + VD + R + W
Sbjct: 441 KDLVKNNVSFNAKDIQI-PVY-----DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTT 494
Query: 105 LDRHSKQLD--------VAELDGTNRKTLKTAIQDPRGI------TLHPG----IGY 143
+ + LD + L T+R +D G+ TL G+
Sbjct: 495 QFKATHILDFGPGGASGLGVL--THR------NKDGTGVRVIVAGTLDINPDDDYGF 543
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30,
six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A
{Xanthomonas campestris PV}
Length = 305
Score = 37.0 bits (86), Expect = 0.012
Identities = 26/170 (15%), Positives = 50/170 (29%), Gaps = 24/170 (14%)
Query: 55 KENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDV 114
+ ++D+ + + V+ + G AVD R L + + +
Sbjct: 55 AQRTLVWSDLVGRRVL--GWREDGTVDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITR 111
Query: 115 AELDGTNRKTLKTAIQDPRGITLHPGI----GYVYFSSWNLQAYIGKIGMDGSNF----- 165
++ DG L R + + I G ++F+ G
Sbjct: 112 SDADGQ-AHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHS 170
Query: 166 -------TRILTHEDDIAWPN--ALTLDYFTERLYWADAHLDYIASVDLD 206
L D+ PN A + D + LY + SV++
Sbjct: 171 VYRLPPDGSPLQRMADLDHPNGLAFSPDE--QTLYVSQTPEQGHGSVEIT 218
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 37.4 bits (86), Expect = 0.014
Identities = 41/284 (14%), Positives = 77/284 (27%), Gaps = 45/284 (15%)
Query: 316 CNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTG 375
+ + C + C+ ++ H + E C +C G CEC+
Sbjct: 421 FKDSLIVQVTFDC--DCACQAQAEPNSHRCNNGNGTFECGVC--RCGPGWLGSQCECSEE 476
Query: 376 YKLLEDGKACTDID--------------ECIEQPG----VCSQYPAMCHNRPCDKDTEFA 417
C+ + +C+ + +Y C + C +
Sbjct: 477 DYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKITGKYCE-CDDFSCVRYKGEM 535
Query: 418 CRN-GHCIPKLWVCDFD---NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKW-- 471
C G C +CD D C + M G +C + P
Sbjct: 536 CSGHGQCSCGDCLCDSDWTGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYG 595
Query: 472 LFCDGKDDCRDGSDELPQ--NCPLESLGSVCNG---VNDCKDNITS-DETHARCPSNITC 525
C+ C D + C G++ + C+D I S E + C
Sbjct: 596 DTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRDEIESVKELKDTGKDAVNC 655
Query: 526 PPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
N + CV + + + + ++ C +
Sbjct: 656 -----TYKNEDDCVVRFQYYEDSSGKSILYV-----VEEPECCK 689
Score = 30.1 bits (67), Expect = 2.6
Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 18/97 (18%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKE----SDCEDDSDEPLHCN----------VDECAKVET 354
S+ GKC VC + CE P C D A +
Sbjct: 569 SSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDE 628
Query: 355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDEC 391
N C C D + +TG D CT +E
Sbjct: 629 NTCNRYCRDEIESVKELKDTGK----DAVNCTYKNED 661
Score = 28.9 bits (64), Expect = 6.2
Identities = 21/175 (12%), Positives = 39/175 (22%), Gaps = 42/175 (24%)
Query: 309 CSSSQFRCNNGKCIDYHLVCNKE---SDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
+ +G+C +C+ + C + + KC
Sbjct: 530 RYKGEMCSGHGQCSCGDCLCDSDWTGYYCN----CTTRTDTCMSSNGLLCSGRGKCEC-- 583
Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYP-----------AMCHNRPCDKDT 414
G G G C C P C+ A+ C++
Sbjct: 584 -GSCVCIQPGSY----GDTCEKCPTC---PDACTFKKECVECKKFDRGALHDENTCNRYC 635
Query: 415 EFACRNGHCIPK----LWVCDFDNDCG----------DDSDEPAYMCRQRNCTKG 455
+ + C + N+ Y+ + C KG
Sbjct: 636 RDEIESVKELKDTGKDAVNCTYKNEDDCVVRFQYYEDSSGKSILYVVEEPECCKG 690
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 36.6 bits (84), Expect = 0.022
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 127 TAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALTLDYF 186
T Q+ G HP G +YF+SWN + + T + T +D W +
Sbjct: 223 TKGQNCNGAETHPINGELYFNSWN-AGQVFRYDFTTQETTPLFTIQDS-GWEFHIQFHPS 280
Query: 187 TERLYWADAHLDYIASVDLDGKHKHIV 213
Y + YI D D K K +
Sbjct: 281 GNYAYIVVVNQHYILRSDYDWKTKRLT 307
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 34.7 bits (80), Expect = 0.027
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 12/54 (22%)
Query: 343 HC--NVDECAKVETNQC--GHKCVDTLTGYYCECNTGYKLLEDGKAC-TDIDEC 391
HC N++EC C G C D + Y CEC + G+ C
Sbjct: 92 HCQHNINECE---VEPCKNGGICTDLVANYSCECPGEF----MGRNCQYKGGGH 138
Score = 33.2 bits (76), Expect = 0.077
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 30/102 (29%)
Query: 317 NNGKCID------YHLVC-------NKESDCEDDSDEPLHCNVDECAKVETNQCGH---- 359
N G C+ + C N S E SDE + C N C +
Sbjct: 10 NGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT---PNPCHNGGTC 66
Query: 360 -----KCVDTLTGYYCECNTGYKLLEDGKAC-TDIDECIEQP 395
DT GY C+C G+ +G C +I+EC +P
Sbjct: 67 EISEAYRGDTFIGYVCKCPRGF----NGIHCQHNINECEVEP 104
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 36.2 bits (83), Expect = 0.031
Identities = 43/291 (14%), Positives = 68/291 (23%), Gaps = 40/291 (13%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
+S CS+ N + + N + V
Sbjct: 361 DSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQ-- 418
Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIP 425
CEC + D C G+C C K+ E +
Sbjct: 419 VLPQCECRCRDQ-SRDRSLCHGKGFLE--CGICR-----CDTGYIGKNCECQTQGRSSQE 470
Query: 426 KLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDD------ 479
C DN+ S +C Q C C + C+ +
Sbjct: 471 LEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGP 530
Query: 480 -----------CRDG------SDELPQNCPLESLGSVCNGVNDCKDNI---TSDETHARC 519
C G E L C+G C+ N+ S C
Sbjct: 531 GRGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLC 590
Query: 520 PSNITCPP---HHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTC 567
CP ++ CA + + + C + + + RTC
Sbjct: 591 QECPGCPSPCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNP-VKGRTC 640
Score = 33.9 bits (77), Expect = 0.18
Identities = 35/262 (13%), Positives = 63/262 (24%), Gaps = 39/262 (14%)
Query: 305 ENSTCSSSQFRCNNG-------KCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQC 357
RC+ G E C D++ + + +C QC
Sbjct: 439 GKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC---VCGQC 495
Query: 358 ----GHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCS----------QYPA 403
+ G YCEC+T +G+ C + G C Q
Sbjct: 496 LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGSACQCER 555
Query: 404 MCHNRPCDKDTEFACRN-GHCIPKLWVCD---FDNDCGDDSDEPAYMCRQRNCTKGWERC 459
+ E C G C + C C + P+ + +C + +
Sbjct: 556 TTEGCLNPRRVE--CSGRGRCRCNVCECHSGYQLPLCQECPGCPSPCGKYISCAECLKFE 613
Query: 460 PGKTNYRC-IPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHAR 518
G C + + + + + C + D
Sbjct: 614 KGPFGKNCSAACPGLQLSNNPVKGRTCKERDSE-------GCWVAYTLEQQDGMDRYLIY 666
Query: 519 CPSNITCPPHHLKCANTNICVE 540
+ C C N+ +
Sbjct: 667 VDESRECVAGPDGCGE-NLYFQ 687
Score = 30.5 bits (68), Expect = 1.8
Identities = 26/182 (14%), Positives = 48/182 (26%), Gaps = 17/182 (9%)
Query: 395 PGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR-----Q 449
+ Y + C N ++ +G I + E +++ R
Sbjct: 354 DTLKVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTD 413
Query: 450 RNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDN 509
+ +C + + + C GK G C +G C
Sbjct: 414 IVTVQVLPQCECRCRDQSRDRS-LCHGKGFLECGICR----CDTGYIGKNC---ECQTQG 465
Query: 510 ITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQ 569
+S E C + C+ CV LC + G + C C +
Sbjct: 466 RSSQELEGSCRKDNNSII----CSGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCER 521
Query: 570 NS 571
+
Sbjct: 522 YN 523
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 35.2 bits (81), Expect = 0.058
Identities = 16/148 (10%), Positives = 28/148 (18%), Gaps = 14/148 (9%)
Query: 308 TCSSSQFRCNNGKCIDYHLVC-NKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLT 366
C F +C K S+ S + G
Sbjct: 235 GCLFFTFFSQEWPKESQRNLCLLKTSESGLPST---RIKKSKA------LSGFSLQSCRH 285
Query: 367 GYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPK 426
C++ + D + C + C N + + C
Sbjct: 286 SIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKL---CTNAVRCQFFTYTPAQASCNEG 342
Query: 427 LWVCDF-DNDCGDDSDEPAYMCRQRNCT 453
C + G + T
Sbjct: 343 KGKCYLKLSSNGSPTKILHGRGGISGYT 370
Score = 30.2 bits (68), Expect = 2.3
Identities = 15/95 (15%), Positives = 23/95 (24%), Gaps = 8/95 (8%)
Query: 414 TEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWE---RCPGKT----NYR 466
+ +CR+ + D D + + C K RC T
Sbjct: 279 SLQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQAS 338
Query: 467 CIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCN 501
C C K +GS + G
Sbjct: 339 CNEGKGKCYLK-LSSNGSPTKILHGRGGISGYTLR 372
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 35.0 bits (79), Expect = 0.066
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 490 NCPLESLGSVCNG-VNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGD 548
P + G++C+G + D +S C +C T C++ + +C+GD
Sbjct: 34 LQPNKFGGTICSGDIWDQASCSSSTT----CVRQ-AQCGQDFQCKETGRCLKRHLVCNGD 88
Query: 549 NDCGDMSDEDPLHCQQRTCPQN 570
DC D SDED C+
Sbjct: 89 QDCLDGSDEDD--CEDVRAIDE 108
Score = 32.7 bits (73), Expect = 0.35
Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 306 NSTCSSSQFRC-NNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDT 364
F+C G+C+ HLVCN + DC D SDE C + +Q
Sbjct: 62 RQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDED-DCEDVRAIDEDCSQYEPIPGSQ 120
Query: 365 LTGYYCECNTG 375
T
Sbjct: 121 KAALGYNILTQ 131
Score = 31.9 bits (71), Expect = 0.60
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 3/83 (3%)
Query: 405 CHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTK-GWERCPGKT 463
C + G C+ + VC+ D DC D SDE C +
Sbjct: 60 CVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDE--DDCEDVRAIDEDCSQYEPIP 117
Query: 464 NYRCIPKWLFCDGKDDCRDGSDE 486
+ ++D + D
Sbjct: 118 GSQKAALGYNILTQEDAQSVYDA 140
Score = 30.7 bits (68), Expect = 1.3
Identities = 24/141 (17%), Positives = 32/141 (22%), Gaps = 26/141 (18%)
Query: 452 CTKGWERCPGKTNYRCIPKW--LFCDGKD-DCRDGSDELPQNCPLE-------------- 494
C R + K+ C G D S C +
Sbjct: 23 CQDKKYRH---RSLLQPNKFGGTICSGDIWDQASCSSS--TTCVRQAQCGQDFQCKETGR 77
Query: 495 --SLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCG 552
VCNG DC D SDE I + + + D
Sbjct: 78 CLKRHLVCNGDQDCLDG--SDEDDCEDVRAIDEDCSQYEPIPGSQKAALGYNILTQEDAQ 135
Query: 553 DMSDEDPLHCQQRTCPQNSFR 573
+ D Q T +R
Sbjct: 136 SVYDASYYGGQCETVYNGEWR 156
Score = 30.3 bits (67), Expect = 1.9
Identities = 22/166 (13%), Positives = 38/166 (22%), Gaps = 22/166 (13%)
Query: 307 STCSSSQFRCNNGKCIDYH--LVCN-KESDCEDDSDEPLHCNVDECAKVETNQCGHKCVD 363
C ++R + + +C+ D S C + QC
Sbjct: 21 FPCQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSST-TCVRQAQCGQDF-QCKETGRC 78
Query: 364 TLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHC 423
C G + DG D ++ CSQY + ++
Sbjct: 79 LKRHLVC---NGDQDCLDGSDEDDCEDVRAIDEDCSQYEPIPGSQ--------------K 121
Query: 424 IPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIP 469
+ D D Y + G R +
Sbjct: 122 AALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERL 167
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion,
cytoplasmic vesicl lectin, virulence, EGF-like domain,
membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A
Length = 61
Score = 31.3 bits (70), Expect = 0.075
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 338 SDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKA 384
S+ P C+ + C C +T +GY C CN GY++ DG
Sbjct: 8 SETPAACSSNPCGPEAAGTCK----ETNSGYICRCNQGYRISLDGTG 50
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 34.2 bits (78), Expect = 0.11
Identities = 21/150 (14%), Positives = 42/150 (28%), Gaps = 17/150 (11%)
Query: 45 LNVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLA--------VD 96
LN + + ++ AD I+ V + H +
Sbjct: 119 LNGITPL---SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLK 175
Query: 97 WVGRKLYWLDRHSKQLDVAELDGTNRKTLKTAIQD---PRGITLHPGIGYVYFSSWNLQA 153
G LY + L +D T++ + G +Y ++ +
Sbjct: 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVE-GNLYGATHIYNS 234
Query: 154 YIGKIGMDGSNFTRILTHEDDIAWPNALTL 183
+ +I D + T I E + A+
Sbjct: 235 -VVRIAPDR-STTIIAQAEQGVIGSTAVAF 262
Score = 33.8 bits (77), Expect = 0.11
Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 19/184 (10%)
Query: 58 RFYFADVAAKTIYR-SRVGSTEKERVIRH--DSHGLEGLAVDWVGR---------KLYWL 105
A +I S V S + D+ L G+ + ++ +
Sbjct: 84 DLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLI 143
Query: 106 DRHSKQLDVAELDGTNRKTLKTAIQ-DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSN 164
D + ++ ++ G+ ++Y S+ + + +I +D ++
Sbjct: 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLYVSNTE-KMLLLRIPVDSTD 200
Query: 165 FTRILTHEDDIAWPNALTLDYFTE-RLYWADAHLDYIASVDLDGKHKHIVISGQKVPHVF 223
+ + D E LY A + + + D I + Q V
Sbjct: 201 KPGEPEIFVEQTNIDDFAFD--VEGNLYGATHIYNSVVRIAPDRSTTIIAQAEQGVIGST 258
Query: 224 ALTL 227
A+
Sbjct: 259 AVAF 262
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor,
PF670462, transferase-transferase I complex; HET: 0CK;
1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Length = 296
Score = 33.5 bits (77), Expect = 0.13
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
+ YR R H PY + L GT R+A + H G
Sbjct: 156 KKYRDARTHQHIPYREN--KNLTGTARYASINTHLG 189
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol,
transferase; 2.00A {Oryza sativa japonica group}
Length = 483
Score = 33.4 bits (76), Expect = 0.20
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
+ YR H PY + L GT R+A + H G
Sbjct: 154 KKYRDTSTHQHIPYREN--KNLTGTARYASVNTHLG 187
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 29.4 bits (67), Expect = 0.21
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 345 NVDECAKVETNQC--GHKCVDTLTGYYCECNTGY 376
+ D+C +N C G C D + Y C C G+
Sbjct: 2 DGDQCE---SNPCLNGGSCKDDINSYECWCPFGF 32
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 33.1 bits (75), Expect = 0.23
Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 42/220 (19%)
Query: 79 KERVIRHDSHGLEGLAVDWVGRKLY----------WLDRHSKQLDVAELDGTNRKTLKTA 128
KE +I S+ D + Y + +S +D A K
Sbjct: 10 KEILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCEN 69
Query: 129 IQD---------PRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHEDD--IAW 177
D I+ + +Y + ++ +G +G + T++ T D W
Sbjct: 70 STDAEKRPLCGRTYDISYNLQNNQLYIV--DCYYHLSVVGSEGGHATQLATSVDGVPFKW 127
Query: 178 PNALTLDYFTERLYWADAHLDY-----------------IASVDLDGKHKHIVISGQKVP 220
A+T+D T +Y+ D Y + D K +++ VP
Sbjct: 128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVP 187
Query: 221 HVFALTLFEDHIYWTDWNTKSINR--ADKFNGRDYRVLRN 258
++ + ++ + I + + VL
Sbjct: 188 GGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK 227
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 32.5 bits (73), Expect = 0.39
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 369 YCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCH 406
+C+ G KL +D C DI C+ P ++ +
Sbjct: 5 HCDGRGGLKLSQDMDTCEDILPCV--PFSVAKSVKSLY 40
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 32.5 bits (73), Expect = 0.40
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 380 EDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDD 439
G+ C D+ + C + + G C+ + +C+ DNDCGD
Sbjct: 41 FHGEPCNFSDK---EVEDCVTNRPCR--SQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQ 95
Query: 440 SDEPAYMCRQRNCTKGWERCPG 461
SDE + C ++ G
Sbjct: 96 SDEANCRRIYKKCQHEMDQYWG 117
Score = 31.0 bits (69), Expect = 1.3
Identities = 26/78 (33%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 497 GSVCNGVNDCKDNITSDETHARCPSNITCPPH----HLKCANTNICVEPYWLCDGDNDCG 552
G CN SD+ C +N C CA T CV LC+GDNDCG
Sbjct: 43 GEPCNF---------SDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCG 93
Query: 553 DMSDEDPLHCQQRTCPQN 570
D SDE + C
Sbjct: 94 DQSDEANCRRIYKKCQHE 111
Score = 29.1 bits (64), Expect = 4.9
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 311 SSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYC 370
G+C++ L+CN ++DC D SDE + + + E +Q
Sbjct: 69 EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRRIYKKCQHEMDQYWGI---GSLASGI 125
Query: 371 ECNTG 375
T
Sbjct: 126 NLFTN 130
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller,
lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of
basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Length = 329
Score = 32.1 bits (73), Expect = 0.41
Identities = 37/259 (14%), Positives = 69/259 (26%), Gaps = 40/259 (15%)
Query: 46 NVVAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGL----EGLAVDWVGRK 101
+V + + + + V +++ L GL++D G
Sbjct: 45 HVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN- 103
Query: 102 LYWLDRHSKQLDVAELDGTNRKTLKTA-----------IQDPRGITLHPGIGYVYFSSWN 150
+ D Q+ + L P + + P G V+ S
Sbjct: 104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY 163
Query: 151 LQAYIGKIGMDG-------SNFTRILTHEDDIAWPNALTLDYFTERLYWADAHLDYIASV 203
+ I + G + + P++L L ++L AD I
Sbjct: 164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF 223
Query: 204 DLDGKHKHIVIS-GQKVPHVFALTLF-------EDHIYWTDWNTKSINRADKFNGRDYRV 255
D K I +VFA++ Y+ D + N +
Sbjct: 224 KTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEP---VQGFVMNFSSGEI 280
Query: 256 L------RNTTHRPYDIHV 268
+ R P+DI
Sbjct: 281 IDVFKPVRKHFDMPHDIVA 299
>3nke_A Protein YGBT; crispr, CAS1, nuclease, DNA recombination, DNA
repair, system; 1.40A {Escherichia coli}
Length = 200
Score = 31.8 bits (72), Expect = 0.41
Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 65 AAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAELDGTNRKT 124
+ ++ R G R G+EG V R Y L +KQ V +G
Sbjct: 24 VVRKMFELRFGEPAPARRSVEQLRGIEGSRV----RATYAL--LAKQYGV-TWNGRRYDP 76
Query: 125 LKTAIQDP 132
D
Sbjct: 77 KDWEKGDT 84
>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin,
metalloproteinase, C-type lectin, hydrolase, BL
clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia
russellii siamensis}
Length = 427
Score = 32.3 bits (73), Expect = 0.45
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 11/165 (6%)
Query: 328 CNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTD 387
C ++C++ + C + A+ C ++C G C C
Sbjct: 229 CGSPANCQNPCCDAATCKLKPGAECGNGLCCYQCKIKTAGTVCRRARD--------ECDV 280
Query: 388 IDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMC 447
+ C Q C + + +PC + C NG C C + + +
Sbjct: 281 PEHCTGQSAECPRDQLQQNGKPCQ-NNRGYCYNGDCPIMRNQCISLFGSRANVAKDSCFQ 339
Query: 448 R-QRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNC 491
+ G+ R C P+ + C G+ C + S C
Sbjct: 340 ENLKGSYYGYCRKENGRKIPCAPQDVKC-GRLFCLNNSPRNKNPC 383
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 32.4 bits (73), Expect = 0.51
Identities = 33/199 (16%), Positives = 59/199 (29%), Gaps = 28/199 (14%)
Query: 355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
++ V+ + +C C K G C + C Y RP +
Sbjct: 266 VDGVNEEVEGMVHGHCMCRHNTK----GLNC---ELC------MDFYHD-LPWRPAEGRN 311
Query: 415 EFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFC 474
AC+ +C C FD ++ + C T R +
Sbjct: 312 SNACKKCNCNEHSSSCHFDMAV--------FLATGNVSGGVCDNCQHNTMGRNCEQCKPF 363
Query: 475 DGKDDCRDGSDELP-QNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCA 533
+ RD D + C + GS G+ D + + +C C H
Sbjct: 364 YFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCR----CKLHVEGE- 418
Query: 534 NTNICVEPYWLCDGDNDCG 552
++C E ++ ++ G
Sbjct: 419 RCDVCKEGFYDLSAEDPYG 437
Score = 28.9 bits (64), Expect = 5.5
Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 31/186 (16%)
Query: 345 NVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAM 404
N + C K N+ C + + N + ++ + T C +
Sbjct: 311 NSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNC--------EQCKP 362
Query: 405 CHNRPCDKDT--EFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGK 462
+ + ++D C C P D D Q C
Sbjct: 363 FYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLI-AGQCRCKLHV------ 415
Query: 463 TNYRCIPKWLFCDGKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSN 522
RC D C++G +L P CN + D C
Sbjct: 416 EGERC----------DVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCY-- 463
Query: 523 ITCPPH 528
C
Sbjct: 464 --CKRL 467
>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate
immunity, melanin, immune system binding complex; HET:
NAG FUC; 2.00A {Holotrichia diomphalia}
Length = 394
Score = 31.7 bits (72), Expect = 0.71
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 434 NDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD--DCRDGSDELPQNC 491
CG +D+ +C + RC G TN + + G+ D R+ ++E C
Sbjct: 35 PRCGTGADQGKKVCIVYH------RCDGVTNTVTPEEVINTTGEGIFDIRENANE----C 84
Query: 492 PLESLGSVCNGVNDCKDNITSDETHARCPSNITC 525
S VC G+ + T T P
Sbjct: 85 E--SYLDVCCGLPEGGVLPTPSPTPPVVPVLKPS 116
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A
{Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A*
2csn_A*
Length = 298
Score = 31.2 bits (71), Expect = 0.77
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
+ YR H PY L GT R+ + H G
Sbjct: 159 KFYRDPVTKQHIPYREK--KNLSGTARYMSINTHLG 192
>3kya_A Putative phosphatase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.77A {Bacteroides
thetaiotaomicron}
Length = 496
Score = 31.4 bits (70), Expect = 0.87
Identities = 19/114 (16%), Positives = 37/114 (32%), Gaps = 19/114 (16%)
Query: 118 DGTNRKTLKTAIQDPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGSNFTRILTHE----- 172
D + L A + G T+HP G +YF+S+ + + ++ + T
Sbjct: 235 DDRSDIQLIAAYKQCNGATIHPINGELYFNSYE-KGQVFRLDLVDYFKTIKNGGSWDPIV 293
Query: 173 -------------DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIV 213
D +W + + + Y+ + Y D D K +
Sbjct: 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFI 347
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase,
transferase, ATP- binding, phosphorylation,
nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB:
2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Length = 330
Score = 30.8 bits (70), Expect = 1.2
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 251 RDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
++Y H PY H L GT R+ + H G
Sbjct: 158 KEYIDPETKKHIPYREH--KSLTGTARYMSINTHLG 191
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 28.6 bits (64), Expect = 1.4
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 361 CVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQP----GVCSQ 400
+ + YC CN+G + C E G C Q
Sbjct: 25 VLRSNRVEYCWCNSGR----AQCHSVPVKSCSEPRCFNGGTCQQ 64
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 30.9 bits (69), Expect = 1.6
Identities = 37/274 (13%), Positives = 59/274 (21%), Gaps = 64/274 (23%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESD---CEDD--SDEPLHCNVDECAKVETNQCGHK 360
S + C+ + D C D S +E +
Sbjct: 332 GKYYS---YYCDEH----FETPSGSYWDHIHCTQDGWSPAVPCLRKCYFPYLENGYNQNH 384
Query: 361 CVDTLTG--YYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFAC 418
+ G C+ GY L + T ++ S P C +
Sbjct: 385 GRKFVQGKSIDVACHPGYALPKAQTTVTCME------NGWSPTP-RCIRVKTCSKSSIDI 437
Query: 419 RNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKD 478
NG + + C G+ G+T+
Sbjct: 438 ENGFISESQYTYALKEKA------------KYQCKLGYVTADGETSGSIR---------- 475
Query: 479 DCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNIC 538
C C K +AR ++ T + C
Sbjct: 476 -CGKDGWSAQPTC--------------IKSCDIPVFMNARTKNDFTWFKLNDTL--DYEC 518
Query: 539 VEPYWLCDGDN----DCGDMSDEDPLHCQQRTCP 568
+ Y G CG D C +R C
Sbjct: 519 HDGYESNTGSTTGSIVCGYNGWSDLPICYERECE 552
Score = 30.5 bits (68), Expect = 1.9
Identities = 11/88 (12%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 298 YLGSGNKENSTCSSSQFRCNNGKCIDYHLVCNKESDCEDD-SDEPLHCNVDECAKVETNQ 356
++ + + ++C G + + + C + P C +C + + +
Sbjct: 926 HMSDSYQYGEEVT---YKCFEG----FGIDGPAIAKCLGEKWSHPPSCIKTDCLSLPSFE 978
Query: 357 CGHKCVDTLTGY------YCECNTGYKL 378
+ Y C T YK+
Sbjct: 979 NAIPMGEKKDVYKAGEQVTYTCATYYKM 1006
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 30.5 bits (68), Expect = 1.8
Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 9/114 (7%)
Query: 301 SGNKENSTCSSS-QFRCNNGKCIDYHLVCNKESDCEDD---SDEPLHCNVDECAKVETNQ 356
SG + + + F+C +G + L + + C+ D E C + C V +
Sbjct: 594 SGKEAPYFYNDTVTFKCYSG----FTLKGSSQIRCKADNTWDPEIPVCEKETCQHVRQSL 649
Query: 357 CGHKCVDTLTGYYCECNTGYKLLEDGKA-CTDIDECIEQPGVCSQYPAMCHNRP 409
+ C GY+L C D + I + CH P
Sbjct: 650 QELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPP 703
Score = 29.7 bits (66), Expect = 2.9
Identities = 29/244 (11%), Positives = 58/244 (23%), Gaps = 33/244 (13%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDD---SDEPLHCNVDECAKVETNQCGHKCV 362
N T F C G + L +K+ C C + A +
Sbjct: 352 NDTVI---FACMFG----FTLKGSKQIRCNAQGTWEPSAPVCEKECQAPPNILNGQKEDR 404
Query: 363 DTLTGYY-----CECNTGYKL--------LEDGKACTDIDECIEQPGVCSQYPAMCHNRP 409
+ CN GY L +G + +C + C +P
Sbjct: 405 HMVRFDPGTSIKYSCNPGYVLVGEESIQCTSEGVWTPPVPQC--KVAACEATGRQLLTKP 462
Query: 410 CDK----DTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNY 465
+ D +C G+ + + + C++ C G
Sbjct: 463 QHQFVRPDVNSSCGEGYKLSGSVYQECQGTIPWFMEIRL--CKEITCPPPPVIYNGAHTG 520
Query: 466 RCIPKWLFCD-GKDDCRDGSDELPQNCPLESLGSVCNGVNDCKDNITSDETH-ARCPSNI 523
+ + + C G + + + C + + + +
Sbjct: 521 SSLEDFPYGTTVTYTCNPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAV 580
Query: 524 TCPP 527
C
Sbjct: 581 QCSH 584
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 30.0 bits (67), Expect = 1.8
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 20/111 (18%)
Query: 306 NSTCSSSQFRCNNG----KC---IDYHLVCNKESDCEDDSDEPL-------HCNVDECAK 351
RC+ G C E C D++ + C C
Sbjct: 101 KGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLC-- 158
Query: 352 VETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYP 402
+ G YCEC+T +G+ C + G C +P
Sbjct: 159 ----HTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 205
>3ghm_A A disintegrin and metalloproteinase with thrombos motifs 13;
thrombospondin type-1 motif, beta sandwich, hydrolase;
HET: NAG FUC BGC; 2.60A {Homo sapiens} PDB: 3ghn_A*
Length = 410
Score = 30.3 bits (67), Expect = 1.9
Identities = 20/132 (15%), Positives = 30/132 (22%), Gaps = 5/132 (3%)
Query: 329 NKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDI 388
C + CN C K + +C T G G A
Sbjct: 134 FGGRACVGADLQAEMCNTQACEKTQLEFMSQQCARTDGQPLRSSPGGASFYHWGAAVPHS 193
Query: 389 DECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCR 448
+C + D C+P D + C
Sbjct: 194 QGDALCRHMCRAIGESFIMKRGDS----FLDGTRCMPSGPREDGTLSLCVLGSCRTFGCD 249
Query: 449 QR-NCTKGWERC 459
R + + W+RC
Sbjct: 250 GRMDSQQVWDRC 261
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 30.2 bits (67), Expect = 2.3
Identities = 10/65 (15%), Positives = 17/65 (26%), Gaps = 8/65 (12%)
Query: 318 NGKCIDYHLVCNKESDCEDDSDEPLHC--NVDECAKVETNQCGH--KCVDTLTGYYCEC- 372
+ D E + +E E C + C C+C
Sbjct: 160 QSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEG---EGGVCLNGGVCSVVDDQAVCDCS 216
Query: 373 NTGYK 377
TG++
Sbjct: 217 RTGFR 221
Score = 30.2 bits (67), Expect = 2.6
Identities = 11/104 (10%), Positives = 30/104 (28%), Gaps = 10/104 (9%)
Query: 318 NGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH--KCVDTLTGYYCECNTG 375
+G+ D + ++ + + C+ + +N C + C D Y C+C+
Sbjct: 592 DGQSKDI----RQMAEVQSTAGVKPSCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGT 647
Query: 376 YKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACR 419
+ + + + + + R
Sbjct: 648 GY----LGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLR 687
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 30.2 bits (67), Expect = 2.3
Identities = 34/269 (12%), Positives = 59/269 (21%), Gaps = 31/269 (11%)
Query: 310 SSSQFRCNNGKCIDYHLVCNKESDCEDD---SDEPLHCNVDECAKVETNQCGHKCVDTLT 366
+ C G Y L C S E C V C + + L
Sbjct: 1179 QEVFYSCEPG----YDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLN 1234
Query: 367 GYY-----CECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNG 421
C+ G++L G + + + + +C + C
Sbjct: 1235 LQLGAKVSFVCDEGFRL--KGSSVSHCVLV-GMRSLWNNSVPVCEHIFCPNPPAILNGRH 1291
Query: 422 HCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGWERCPGKTNYRCIPKWLFCDGKDDCR 481
P E +Y C G++ RC
Sbjct: 1292 TGTPS--------GDIPYGKEISYTCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPA 1343
Query: 482 DGSDELPQNCPLESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTNICVEP 541
+ + ++ N N C P + + C+E
Sbjct: 1344 PRCELSVRAGHCKTPEQFPFASPTIPINDFEFPVGTSL--NYECRPGYFGKMFSISCLEN 1401
Query: 542 YWLCDGDNDCGDMSDEDPLHCQQRTCPQN 570
+++C C P N
Sbjct: 1402 LVWSSVEDNC------RRKSCGPPPEPFN 1424
Score = 29.4 bits (65), Expect = 4.4
Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 35/157 (22%)
Query: 298 YLGSGNKENSTCSSSQFRCNNG--KCIDYHLVCNKESDCEDD-------SDEPLHCNVDE 348
++ + + S +RCN G + LV C + S C +
Sbjct: 586 FISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQCIIPN 645
Query: 349 CAKVETNQCGHKCVDTLTGYY------CECNTGYKL--------LEDGKACTDIDECIEQ 394
+ G D + + C G+ + K ++ C
Sbjct: 646 KCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSR- 704
Query: 395 PGVCSQYPAMCHNR--PCDKDT-------EFACRNGH 422
VC P + H DKD ++C G+
Sbjct: 705 --VCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGY 739
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein
of unknown function structural genomics; HET: MSE; 1.70A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 409
Score = 29.9 bits (67), Expect = 2.6
Identities = 22/178 (12%), Positives = 41/178 (23%), Gaps = 15/178 (8%)
Query: 48 VAMDFHYKENRFYFADVAAKTIYRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDR 107
+A N + V + V G + D +
Sbjct: 136 IAAV---GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWEG 192
Query: 108 HSKQLDVAELDGTNRKTLKTAIQ----DPRGITLHPGIGYVYFSSWNLQAYIGKIGMDGS 163
+ G + + L ++YF N G+ +
Sbjct: 193 THTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSN--KNFGRFNVKTQ 250
Query: 164 NFTRILTHE-----DDIAWPNALTLDYFTERLYWADAHLDYIASVDLDGKHKHIVISG 216
T I E P + Y +D +L + + DG+ + S
Sbjct: 251 EVTLIKQLELSGSLGTNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGECEWFCGSA 307
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 29.6 bits (65), Expect = 3.4
Identities = 29/233 (12%), Positives = 47/233 (20%), Gaps = 8/233 (3%)
Query: 333 DCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECI 392
D D + V + C C G E C
Sbjct: 143 DWRDIVRDRDAEIVVKDNGRSCPPCHEVCKGRCWGPGSEDCQTLTKTICAPQCNGHCFGP 202
Query: 393 EQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNC 452
C A + P D D C C ++ +
Sbjct: 203 NPNQCCHDECAGGCSGPQDTD----CFACRHFNDSGACVPRCPQPLVYNKLTFQLEPNPH 258
Query: 453 TKGWERCPGKTNYRCIPKWLFCDGK--DDCRDGSDELPQNCPLESLGSVCNGVNDCKDNI 510
TK + G C ++ C E+ +N C+
Sbjct: 259 TK--YQYGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLKMCEPCGGLCPKACEGTG 316
Query: 511 TSDETHARCPSNITCPPHHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQ 563
+ SNI + K + D + + E +
Sbjct: 317 SGSRFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWHKIPALDPEKLNVFR 369
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 29.6 bits (65), Expect = 3.5
Identities = 29/288 (10%), Positives = 56/288 (19%), Gaps = 21/288 (7%)
Query: 306 NSTCSSSQFRCNNGKCIDY---HLVCNKESDCEDDSDEPLHCNVDECAK--------VET 354
+S C + ++G C + + N ++ + E + C E
Sbjct: 228 HSDCLACLHFNHSGICELHCPALVTYNTDTFESMHNPEGRYTFGASCVTTCPYNYLSTEV 287
Query: 355 NQCGHKCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDT 414
C C E T + ++ + + D
Sbjct: 288 GSCTLVCPPNNQEVTAEDGTQRCEKCSKPCARVCYGLGMEHLRGARAITSDNVQEFDGCK 347
Query: 415 EFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT---KGWERCPGKTNYRCIPKW 471
+ ++ T +
Sbjct: 348 KIFGSLAFLPESFDGDPSSGIAPLRPEQLQVFETLEEITGYLYISAWPDSLRDLSVFQNL 407
Query: 472 LFCDGKDDCRDGSDELPQNCPLESLG-----SVCNGVNDCKDNITSDETHARCPSNITCP 526
G+ Q + SLG + +G+ N H +
Sbjct: 408 RIIRGRILHDGAYSLTLQGLGIHSLGLRSLRELGSGLALIHRNAHLCFVHTVPWDQLFRN 467
Query: 527 P--HHLKCANTNICVEPYWLCDGDNDCGDMSDEDPLHCQQRTCPQNSF 572
P L N ++ C P Q C
Sbjct: 468 PHQALLHSGNRPEEDCGLEGLVCNSLCAHGHCWGPGPTQCVNCSHFLR 515
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 29.3 bits (66), Expect = 3.7
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 11/94 (11%)
Query: 95 VDWV--GRKLY--WLDRHSKQLDVAELDGTNRKTLKTAIQ--DPRGITLHPGIGYVYFSS 148
+ W LY ++R + V D + ++T D + + F
Sbjct: 263 LSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL---TFLP 319
Query: 149 WNLQAYIGKIGMDGSNFTRILTHEDDIAWPNALT 182
+ +I + DG + + ++ +T
Sbjct: 320 GSNNQFIWQSRRDG--WNHLYLYDTTGRLIRQVT 351
>3bgh_A Protein HPAA, putative neuraminyllactose-binding hemagglutinin;
structural genomics, unknown function, PSI-2, protein
struct initiative; 2.45A {Helicobacter pylori}
Length = 236
Score = 28.6 bits (63), Expect = 4.5
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 30 MSLDATQYSLVHQDLLNVVAMDFHYK 55
MSLD H + V + FHY
Sbjct: 1 MSLDGMPAKQQHNNTGESVELHFHYP 26
>3dem_A Complement factor MAsp-3; complement system, innate immunity,
calcium binding sites, C pathway, EGF-like domain,
glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}
Length = 278
Score = 28.4 bits (63), Expect = 5.6
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 344 CNVDECAK--VETNQCGHKCVDTLTGYYCECNTGYKLLEDGKAC 385
+VDEC + E C H C + + GYYC C GY L D + C
Sbjct: 119 VDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTC 162
>3u07_A Uncharacterized protein VPA0106; structural genomics, PSI-biology,
protein structure initiati northeast structural genomics
consortium; 2.08A {Vibrio parahaemolyticus}
Length = 443
Score = 28.8 bits (63), Expect = 5.7
Identities = 6/67 (8%), Positives = 13/67 (19%)
Query: 227 LFEDHIYWTDWNTKSINRADKFNGRDYRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
+ N +R G + V ++ + L
Sbjct: 110 ILHTMDMGHYTNAAFSSRTRGTKGGQFMFAAQDWQGEVPASVDEVVRVDSNLVKLMGRIM 169
Query: 287 STTVADM 293
+ D
Sbjct: 170 AVNDEDA 176
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 28.8 bits (63), Expect = 6.2
Identities = 25/279 (8%), Positives = 47/279 (16%), Gaps = 22/279 (7%)
Query: 306 NSTCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTL 365
C + ++ + + P H D C C
Sbjct: 239 KEECPPMRKYNPTTYVLETNPEGKYAYGATCVKECPGHLLRDN------GACVRSCPQ-- 290
Query: 366 TGYYCECNTGYKLLEDGKACTDIDECIEQPGVCSQYPAMCHNRPCDKDTEFACRNGHCIP 425
+ + C + +G
Sbjct: 291 -DKMDKGGECVPCNGPCPKTCPGVTVLHAG--NIDSFRNCTVIDGNIRILDQTFSGFQDV 347
Query: 426 KLWVCDFDNDCGDDSDEPAYMCRQRNCT---KGWERCPGKTNYRCIPKWLFCDGKDDCRD 482
D + + T P N G+
Sbjct: 348 YANYTMGPRYIPLDPERLEVFSTVKEITGYLNIEGTHPQFRNLSYFRNLETIHGRQLMES 407
Query: 483 GSDELPQNCP------LESLGSVCNGVNDCKDNITSDETHARCPSNITCPPHHLKCANTN 536
L + +L + +G + N I P N N
Sbjct: 408 MFAALAIVKSSLYSLEMRNLKQISSGSVVIQHNRDLCYVSNIRWPAIQKEPEQKVWVNEN 467
Query: 537 ICVEPYWLCDG--DNDCGDMSDEDPLHCQQRTCPQNSFR 573
+ + + C + Q C +F
Sbjct: 468 LRADLCEKNGTICSDQCNEDGCWGAGTDQCLNCKNFNFN 506
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 28.4 bits (62), Expect = 6.3
Identities = 24/165 (14%), Positives = 38/165 (23%), Gaps = 20/165 (12%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGH------- 359
C C L C +D E + + CA G
Sbjct: 63 EKCHDCSQPCPWPMI--EKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGT 120
Query: 360 -----KCVDTLTGYYCECNTGYKLLEDGKACTDIDECIEQPG------VCSQYPAMCHNR 408
+C G + + + + C + + +PG VC P+ +
Sbjct: 121 ETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSST 180
Query: 409 PCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT 453
T R H G +S E R
Sbjct: 181 SPSPGTAIFPRPEHMETHEVPSSTYVPKGMNSTESNSSASVRPKV 225
>4aqb_A Mannan-binding lectin serine protease 1; blood clotting,
mannan-binding protein, complement, ficolins complement
pathway, mannose- binding lectin; HET: NAG BMA MAN;
4.20A {Homo sapiens}
Length = 361
Score = 28.4 bits (63), Expect = 6.3
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 356 QCGHKCVDTLTGYYCECNTGYKLLEDGKACTDID-ECIEQPGVCSQYPAMCHNRPCDKDT 414
+ C+TGYK+L+D EC++ ++ P C D ++
Sbjct: 294 EPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPT-CKKNEIDLES 352
Query: 415 E 415
E
Sbjct: 353 E 353
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside
hydrolase, CAZY, enzyme-carbohydrate interaction,
mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron}
PDB: 4acz_A 4ad0_A* 4acz_B
Length = 382
Score = 28.2 bits (62), Expect = 7.0
Identities = 12/47 (25%), Positives = 17/47 (36%)
Query: 70 YRSRVGSTEKERVIRHDSHGLEGLAVDWVGRKLYWLDRHSKQLDVAE 116
Y S ++ + H + L+V W G Y S LD A
Sbjct: 97 YSSNDPEIIRKHIRMHIKANVGVLSVTWWGESDYGNQSVSLLLDEAA 143
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding,
membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Length = 345
Score = 28.2 bits (63), Expect = 7.8
Identities = 8/34 (23%), Positives = 10/34 (29%), Gaps = 2/34 (5%)
Query: 253 YRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
Y N + GT L AH+G
Sbjct: 203 YCPNGNHKQYQENPR--KGHNGTIEFTSLDAHKG 234
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.3 bits (62), Expect = 8.2
Identities = 24/218 (11%), Positives = 43/218 (19%), Gaps = 42/218 (19%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLT 366
+ + N + +C + + + + + C C
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 367 GYYC---------ECNTGYKLLEDGKACT---------------------DIDECIEQPG 396
+ C EC +D C D
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 397 VCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGW 456
C C N ++ N CIP +C CT
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIP---------ECPSGYTM---NSSNLLCTPCL 305
Query: 457 ERCPGKTNYRCIPKWLFCDGKDDCRDGSDELPQNCPLE 494
CP + K + G + + +
Sbjct: 306 GPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGSLIIN 343
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino
acid sequence, binding sites, domain, models, molecular;
HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Length = 364
Score = 28.2 bits (63), Expect = 8.4
Identities = 7/34 (20%), Positives = 8/34 (23%), Gaps = 2/34 (5%)
Query: 253 YRVLRNTTHRPYDIHVYHPLKGTTRHAWLTAHRG 286
Y D GT + AH G
Sbjct: 204 YCPEGVHKAYAADPK--RCHDGTIEFTSIDAHNG 235
>2qqj_A Neuropilin-2; VEGF receptor, semaphorin receptor, developmental
protein, differentiation, glycoprotein, membrane,
neurogenesis, transmembrane; 1.95A {Homo sapiens}
Length = 325
Score = 27.9 bits (61), Expect = 8.6
Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 7/82 (8%)
Query: 401 YPAMCHNRPCDKDTEFACRNG-------HCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCT 453
P H+ + F CR + + D + R +
Sbjct: 140 RPQTWHSGIALRLELFGCRVTDAPCSNMLGMLSGLIADSQISASSTQEYLWSPSAARLVS 199
Query: 454 KGWERCPGKTNYRCIPKWLFCD 475
P + +WL D
Sbjct: 200 SRSGWFPRIPQAQPGEEWLQVD 221
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase,
organophosphate hydrolase, calcium bound, alternative
splicing, cytoplasm, phosphoprotein; 1.42A {Homo
sapiens} PDB: 3g4h_B
Length = 297
Score = 28.0 bits (63), Expect = 9.0
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 12/63 (19%)
Query: 50 MDFHYKENRFYFADVAAKTIYRSRVGS-----TEKERVIRHDSHGLE--GLAVD-----W 97
+D+ FY+ D + ++ + + V + + G+ +D W
Sbjct: 154 LDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLW 213
Query: 98 VGR 100
V
Sbjct: 214 VAC 216
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 28.0 bits (62), Expect = 9.1
Identities = 19/106 (17%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 321 CIDYHLVCNKESDCEDDSDEPLHCNVDECAKVET----NQCGH--KCVDTLTGYYCEC-N 373
C+ + + D D+ C T + C + C+ G+ C+C
Sbjct: 153 CLASVDLNGRLPDLISDALFCNGQIERGCEGPSTTCQEDSCSNQGVCLQQWDGFSCDCSM 212
Query: 374 TGYKLLEDGKACTDIDECIEQPGVCSQ--YPAMCHNRPCDKDTEFA 417
T + G C D Q Y ++RP + A
Sbjct: 213 TSF----SGPLCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLA 254
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.3 bits (62), Expect = 9.3
Identities = 25/207 (12%), Positives = 43/207 (20%), Gaps = 42/207 (20%)
Query: 307 STCSSSQFRCNNGKCIDYHLVCNKESDCEDDSDEPLHCNVDECAKVETNQCGHKCVDTLT 366
+ + N + +C + + + + + C C
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICK 197
Query: 367 GYYC---------ECNTGYKLLEDGKACT------DIDECIEQ---------------PG 396
+ C EC +D C C+E
Sbjct: 198 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 257
Query: 397 VCSQYPAMCHNRPCDKDTEFACRNGHCIPKLWVCDFDNDCGDDSDEPAYMCRQRNCTKGW 456
C C N ++ N CIP+ C + CT
Sbjct: 258 FCQDLHHKCKNSRRQGCHQYVIHNNKCIPE---CPSGYTMNSSN---------LLCTPCL 305
Query: 457 ERCPGKTNYRCIPKWLFCDGKDDCRDG 483
CP + K + G
Sbjct: 306 GPCPKVCHLLEGEKTIDSVTSAQELRG 332
>2ao7_A ADAM 10; extracellular, protease, disintegrin, hydrolase; 2.90A
{Bos taurus}
Length = 192
Score = 27.7 bits (61), Expect = 9.3
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 308 TCSSSQFRCNNGKCIDYHLVCNKESDCE----DDSDEPLHCNVDECAKVETNQCGHKCVD 363
C+ C NG+C + +C D D+ C+V K+E + C
Sbjct: 100 DCNRHTQVCINGQCAGSICEKHGLEECTCASSDGKDDKELCHVCCMKKMEPSTCASTGSV 159
Query: 364 TLTGYYCECNTGYKLLEDGKACTDI 388
Y+ L+ G C D
Sbjct: 160 QWNKYFLGRT---ITLQPGSPCNDF 181
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.465
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,197,735
Number of extensions: 569364
Number of successful extensions: 2425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1662
Number of HSP's successfully gapped: 500
Length of query: 573
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 474
Effective length of database: 3,937,614
Effective search space: 1866429036
Effective search space used: 1866429036
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.0 bits)