Query psy9520
Match_columns 675
No_of_seqs 15 out of 17
Neff 1.6
Searched_HMMs 46136
Date Fri Aug 16 21:44:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11844 DUF3364: Domain of un 51.5 8.9 0.00019 31.8 1.5 44 186-229 3-47 (56)
2 PF05705 DUF829: Eukaryotic pr 34.2 13 0.00028 34.4 -0.1 50 17-79 67-116 (240)
3 PTZ00465 rhoptry-associated pr 34.1 39 0.00085 38.0 3.4 136 415-585 336-471 (565)
4 PTZ00465 rhoptry-associated pr 34.1 39 0.00085 38.0 3.4 136 385-555 336-471 (565)
5 PTZ00341 Ring-infected erythro 25.9 2.6E+02 0.0056 34.2 8.3 93 176-278 1015-1107(1136)
6 PF11223 DUF3020: Protein of u 20.1 39 0.00084 27.5 0.3 19 237-255 2-20 (49)
7 PF13226 DUF4034: Domain of un 19.7 31 0.00067 35.4 -0.4 38 6-48 140-177 (277)
8 PF07619 DUF1581: Protein of u 16.2 79 0.0017 28.3 1.3 41 11-55 22-64 (84)
9 PF12485 SLY: Lymphocyte signa 15.1 89 0.0019 30.3 1.5 30 60-91 114-143 (154)
10 PF04488 Gly_transf_sug: Glyco 14.1 1.1E+02 0.0024 25.6 1.6 17 338-354 1-17 (103)
No 1
>PF11844 DUF3364: Domain of unknown function (DUF3364); InterPro: IPR024564 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene [, ]. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE operon and of some other nif genes []. It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I []. This entry represents the uncharacterised N-terminal domain of the molybdenum-iron protein beta chain, which is part of the nitrogenase complex that catalyses the key enzymatic reactions in nitrogen fixation. ; PDB: 3U7Q_B 3MIN_D 1M34_D 2AFI_D 2MIN_B 1G21_B 2AFK_D 1FP4_B 1M1Y_L 1G20_D ....
Probab=51.54 E-value=8.9 Score=31.83 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=29.7
Q ss_pred hCchhhHHHHHHhhhhCHHHHHHh-hHHhhhhCchhhHHHHHHHh
Q psy9520 186 KNPEANKDCVKRYKEKNPEVIRER-TKRYHEKNPEANKDCVKRYK 229 (675)
Q Consensus 186 ENPEKiKe~~RrYyekNrDkIraR-rR~Yeekn~e~nk~RvRrwk 229 (675)
.++|+|.++..=+.+.==..+.++ ++.++.-+++.--++|.+|+
T Consensus 3 Q~~dkI~dh~~LF~~peYqe~f~~Kk~~fE~~~~~~~V~ev~eWT 47 (56)
T PF11844_consen 3 QNADKILDHFPLFREPEYQELFANKKKEFENPHSDEKVAEVFEWT 47 (56)
T ss_dssp -BTTB--BHHHHTTSHHHHHHHHHHHHCCTT---HHHHHHHHHHH
T ss_pred CChhccccHHHHcCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHh
Confidence 367788888776655544556666 68999999999999999999
No 2
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=34.21 E-value=13 Score=34.36 Aligned_cols=50 Identities=20% Similarity=0.232 Sum_probs=31.8
Q ss_pred cceeeeecccCCcCcccccccccccCCCCCccchhcccccCCCCCCCcchhhhcccccccccc
Q psy9520 17 WPVVIALFSGNRTNGHFDLLRPIDIHSSPLPQIDFLANRENEFPPLPPVAGQLASSASSVTSV 79 (675)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (675)
||+++-+||.+.......|+ +.+.+......+||.+.|++-.|+.+.+++
T Consensus 67 ~~il~H~FSnGG~~~~~~l~-------------~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~ 116 (240)
T PF05705_consen 67 PPILFHSFSNGGSFLYSQLL-------------EAYQSRKKFGKLLPRIKGIIFDSCPGIPTY 116 (240)
T ss_pred CCEEEEEEECchHHHHHHHH-------------HHHHhcccccccccccceeEEeCCCCcccc
Confidence 78888889854333333333 344455544566676888888888776665
No 3
>PTZ00465 rhoptry-associated protein 1 (RAP-1); Provisional
Probab=34.14 E-value=39 Score=38.01 Aligned_cols=136 Identities=26% Similarity=0.453 Sum_probs=76.8
Q ss_pred HHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHH
Q psy9520 415 VIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC 494 (675)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (675)
-|.+.||.+.+.-|+..|+-++ |-|-+=||.+.+.-|.+.+|-. -+-|..=||.+.+.-|.+.||-
T Consensus 336 ~v~~ptk~f~~~~~~~tk~~~~-------e~i~~ptk~ff~~~~~~tk~ff-------~~~ig~ptk~ff~~~~~~tk~f 401 (565)
T PTZ00465 336 NVAEPTKKFMQDTHEKTKGYLK-------ENVAEPTKTFFKEAPQVTKHFF-------DENIGQPTKEFFREAPQATKHF 401 (565)
T ss_pred hccCchHHHHHhhhhhhhhHHH-------hhcCCchHHHHHhCCcchhhhH-------hhhhcChHHHHHHhCcchHHHH
Confidence 3566666666666665555433 3355556666665565555542 2346666677766666666554
Q ss_pred HHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhh
Q psy9520 495 VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYH 574 (675)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (675)
.. +-|-.=||.+.++-|+..||-+. +-|.+-||.+.++-|++.+|... +-|-+-||.+.
T Consensus 402 ~~-------~~ig~ptk~ff~~~p~~tk~f~~-------~~i~~ptk~f~~~~p~~t~~~~~-------~~i~~~~ke~~ 460 (565)
T PTZ00465 402 LD-------ENIGQPTKEFFREAPQVTKHFLD-------ENIAQPTKEFFRDVPQVTKKVIT-------ENIAQPTKEFL 460 (565)
T ss_pred HH-------hhcCCchHHHHhhchhhHHHHHh-------hcccchhHHHHHhccHHHHHHHH-------hhcccchHHHH
Confidence 32 33555566666666666555432 34666666666666666665442 23444555555
Q ss_pred hcCCccchHHH
Q psy9520 575 EKNPEANKDCV 585 (675)
Q Consensus 575 ~~~~~~~~~~~ 585 (675)
+.-|+..+|.+
T Consensus 461 ~~~~~~~~~~~ 471 (565)
T PTZ00465 461 KEVPHTTMKVL 471 (565)
T ss_pred HhcchhhHHHH
Confidence 55666555543
No 4
>PTZ00465 rhoptry-associated protein 1 (RAP-1); Provisional
Probab=34.14 E-value=39 Score=38.01 Aligned_cols=136 Identities=26% Similarity=0.453 Sum_probs=93.8
Q ss_pred HHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHH
Q psy9520 385 VIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC 464 (675)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (675)
-|.+.||.+.+.-|+..|+-++ |-|-+=||.+.+.-|.+.+|-. -+-|..=||.+.+.-|.+.||-
T Consensus 336 ~v~~ptk~f~~~~~~~tk~~~~-------e~i~~ptk~ff~~~~~~tk~ff-------~~~ig~ptk~ff~~~~~~tk~f 401 (565)
T PTZ00465 336 NVAEPTKKFMQDTHEKTKGYLK-------ENVAEPTKTFFKEAPQVTKHFF-------DENIGQPTKEFFREAPQATKHF 401 (565)
T ss_pred hccCchHHHHHhhhhhhhhHHH-------hhcCCchHHHHHhCCcchhhhH-------hhhhcChHHHHHHhCcchHHHH
Confidence 4677777777777776666543 3466677777777777776653 2457788888888888777765
Q ss_pred HHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhhhcCCccchHHHHHhhhhChHHHHHHhhhhh
Q psy9520 465 VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYH 544 (675)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (675)
.. +-|-.=||.+.++-|+..||-+. +-|.+-||.+.++-|++.+|... +-|-+-||.+.
T Consensus 402 ~~-------~~ig~ptk~ff~~~p~~tk~f~~-------~~i~~ptk~f~~~~p~~t~~~~~-------~~i~~~~ke~~ 460 (565)
T PTZ00465 402 LD-------ENIGQPTKEFFREAPQVTKHFLD-------ENIAQPTKEFFRDVPQVTKKVIT-------ENIAQPTKEFL 460 (565)
T ss_pred HH-------hhcCCchHHHHhhchhhHHHHHh-------hcccchhHHHHHhccHHHHHHHH-------hhcccchHHHH
Confidence 43 44667788888888877776642 45777888888888888777643 34555667776
Q ss_pred hcCCccchHHH
Q psy9520 545 EKNPEANKDCV 555 (675)
Q Consensus 545 ~~~~~~~~~~~ 555 (675)
+.-|+..+|.+
T Consensus 461 ~~~~~~~~~~~ 471 (565)
T PTZ00465 461 KEVPHTTMKVL 471 (565)
T ss_pred HhcchhhHHHH
Confidence 67777666654
No 5
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=25.90 E-value=2.6e+02 Score=34.20 Aligned_cols=93 Identities=32% Similarity=0.436 Sum_probs=61.5
Q ss_pred HHHHHHHHHhhCchhhHHHHHHhhhhCHHHHHHhhHHhhhhCchhhHHHHHHHhhhCHHHHHHHHHHHhhhCchhhHHhh
Q psy9520 176 IRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCV 255 (675)
Q Consensus 176 IREr~RkYhaENPEKiKe~~RrYyekNrDkIraRrR~Yeekn~e~nk~RvRrwkEKNpEKIrERkRk~ReENPEKiKE~a 255 (675)
+-+-.-.|-++|-+.+.+.+..|-++|.+-|.+.. +++-.+-..+-|-.|-+.|-|.|.+-.-.--+ +++
T Consensus 1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 1084 (1136)
T PTZ00341 1015 IEENVEEYDEENVEEVEENVEEYDEENVEEIEENA---EENVEENIEENIEEYDEENVEEIEENIEENIE-------ENV 1084 (1136)
T ss_pred HHHhHHHhhhhhHHHHHhhHHHhhhhhHHHHHHhH---HHhHHHhHHHhHHhhhhhhHHHHHHHHHHHHH-------HHH
Confidence 66677788888888888888888888888887776 33444446667778888888777766543333 333
Q ss_pred HHHhhhCHHHHHHHHHHHhhhCh
Q psy9520 256 KRYKEKNPEVIRERTKRYHEKNP 278 (675)
Q Consensus 256 RryYEENpEkIREr~RqYraENP 278 (675)
-.--++|-|.|.+.+-.--.+|.
T Consensus 1085 ~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1136)
T PTZ00341 1085 EENVEENVEEIEENVEENVEENA 1107 (1136)
T ss_pred HHHHHHhHHHHHHHHHHhHHhhH
Confidence 34445666666666555444444
No 6
>PF11223 DUF3020: Protein of unknown function (DUF3020); InterPro: IPR021386 This family of fungal proteins is conserved towards the C terminus of HMG domains. The function is not known.
Probab=20.12 E-value=39 Score=27.48 Aligned_cols=19 Identities=53% Similarity=0.723 Sum_probs=15.9
Q ss_pred HHHHHHHhhhCchhhHHhh
Q psy9520 237 RERTKRYHEKNPEANKDCV 255 (675)
Q Consensus 237 rERkRk~ReENPEKiKE~a 255 (675)
+||+++||++|.++.+++.
T Consensus 2 rerKkkwre~n~~kNk~~d 20 (49)
T PF11223_consen 2 RERKKKWREANAEKNKDND 20 (49)
T ss_pred cchHHHHHHHHHHhcccHH
Confidence 5788999999999988764
No 7
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=19.72 E-value=31 Score=35.35 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=26.0
Q ss_pred chhhhccCCCCcceeeeecccCCcCcccccccccccCCCCCcc
Q psy9520 6 LELYSSLGEPHWPVVIALFSGNRTNGHFDLLRPIDIHSSPLPQ 48 (675)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (675)
+.+-++||+|.| +.+||-|...-+.-..+ + ++.+.++|
T Consensus 140 ~~~s~~fgeP~W--L~~l~~g~~~~~~~~~~--~-~~~~~~~~ 177 (277)
T PF13226_consen 140 INISAYFGEPDW--LAALFAGQPAESRPLAH--A-EYDPEVWQ 177 (277)
T ss_pred HHHHhhcCCchH--HHHHHCCCCCCcchHHH--h-hcchhhHH
Confidence 345678999999 56789998876654332 2 56666654
No 8
>PF07619 DUF1581: Protein of unknown function (DUF1581); InterPro: IPR022660 Several Rhodopirellula baltica proteins share this domain. They also match PF07622 from PFAM
Probab=16.22 E-value=79 Score=28.33 Aligned_cols=41 Identities=39% Similarity=0.543 Sum_probs=27.4
Q ss_pred ccCCCCcceeeeecccCCcCcccccccccccCCCCC--ccchhcccc
Q psy9520 11 SLGEPHWPVVIALFSGNRTNGHFDLLRPIDIHSSPL--PQIDFLANR 55 (675)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 55 (675)
||+.-..|- |||+|--+++|||+-|+ |-.+|. +||+.|+..
T Consensus 22 ~~~~~a~PW-vair~~~~~~~~frNlr---ItG~P~iP~~I~lv~~~ 64 (84)
T PF07619_consen 22 SLATSAAPW-VAIRSWRRSHGHFRNLR---ITGSPEIPDQINLVESP 64 (84)
T ss_pred ccccccCCe-EEEEEeeeeccceeeeE---EcCCCcCCCccccccCc
Confidence 444444443 68999999999998765 555553 577777554
No 9
>PF12485 SLY: Lymphocyte signaling adaptor protein; InterPro: IPR021090 This entry represents eukaryotic proteins that are typically between 144 and 156 amino acids in length. The entry is found in association with PF07647 from PFAM, PF07653 from PFAM. There is a conserved LGKK sequence motif. SAM/SH3 domain-containing proteins contain a Src homology 3 domain and a sterile alpha motif, suggesting that they may function as a signaling adaptor protein in lymphocytes [].
Probab=15.10 E-value=89 Score=30.28 Aligned_cols=30 Identities=40% Similarity=0.480 Sum_probs=21.5
Q ss_pred CCCCcchhhhccccccccccccccccchHHHh
Q psy9520 60 PPLPPVAGQLASSASSVTSVHSQKTVNRESVK 91 (675)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (675)
-..+++.||+.+|. .|||. +--+-||+|++
T Consensus 114 sl~s~lSgQsSss~-~v~S~-s~g~snRdS~r 143 (154)
T PF12485_consen 114 SLYSSLSGQSSSSS-GVTSC-SSGTSNRDSFR 143 (154)
T ss_pred ccccccccccccCC-CcccC-CCCcccccccc
Confidence 34567899987765 77775 34578899875
No 10
>PF04488 Gly_transf_sug: Glycosyltransferase sugar-binding region containing DXD motif ; InterPro: IPR007577 This entry represents those sugar-binding regions of glycosyltransferases that contain a DXD motif. The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases [].
Probab=14.05 E-value=1.1e+02 Score=25.57 Aligned_cols=17 Identities=24% Similarity=0.565 Sum_probs=13.2
Q ss_pred chhhHHHHHHHHhhChh
Q psy9520 338 PEANKDCVKRYKEKNPE 354 (675)
Q Consensus 338 ~e~~~~~vk~~k~KN~e 354 (675)
|+....||+.|.+.||+
T Consensus 1 P~~~~~~i~s~~~~nP~ 17 (103)
T PF04488_consen 1 PERFQCSIESWARHNPD 17 (103)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 66777788888888887
Done!