Query psy9520
Match_columns 675
No_of_seqs 15 out of 17
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 21:45:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9520.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9520hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nha_A TFIIF-alpha, transcript 42.2 13 0.00044 31.8 2.3 38 75-112 9-46 (82)
2 3may_A RV0203, possible export 26.6 44 0.0015 29.3 3.1 60 65-134 7-66 (101)
3 2ve7_A Kinetochore protein HEC 24.6 11 0.00037 36.9 -1.2 17 9-25 91-108 (315)
4 2dbs_A Hypothetical protein TT 17.2 39 0.0013 29.2 0.9 14 15-28 59-72 (90)
5 1i27_A Transcription factor II 16.1 66 0.0023 26.9 2.0 27 85-111 10-36 (73)
6 3hpw_C Protein CCDA; alpha+bet 16.0 40 0.0014 24.6 0.6 16 165-180 5-20 (36)
7 2ucz_A UBC7, ubiquitin conjuga 12.6 4E+02 0.014 23.1 6.1 39 15-54 35-76 (165)
8 3u1h_A 3-isopropylmalate dehyd 12.2 29 0.00098 35.7 -1.5 50 8-57 91-157 (390)
9 1i7k_A Ubiquitin-conjugating e 12.0 4.3E+02 0.015 23.8 6.3 104 16-126 61-172 (179)
10 3h8k_A Ubiquitin-conjugating e 11.7 4.6E+02 0.016 22.6 6.2 38 16-54 35-75 (164)
No 1
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=42.20 E-value=13 Score=31.77 Aligned_cols=38 Identities=24% Similarity=0.501 Sum_probs=28.6
Q ss_pred cccccccccccchHHHhhhhhhCchhcHHHHHHhhhhC
Q psy9520 75 SVTSVHSQKTVNRESVKRFHEKNPEANKDCVKRYKEKN 112 (675)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~krykeen 112 (675)
+.++.+++..|+-|+|.++...-|-.-+||+.+++-.-
T Consensus 9 ~~~~~~~~~~iTEe~VRryL~rkPmTT~dLl~KFK~r~ 46 (82)
T 1nha_A 9 KTTPNSGDVQVTEDAVRRYLTRKPMTTKDLLKKFQTKK 46 (82)
T ss_dssp -------CCCCCHHHHHHHHHHSCBCHHHHHHHTTSSC
T ss_pred CcCCccCCCCCCHHHHHHHHHhCCccHHHHHHHHHHhc
Confidence 44555678889999999999999999999999998764
No 2
>3may_A RV0203, possible exported protein; helical protein, heme-binding protein; 2.50A {Mycobacterium tuberculosis}
Probab=26.63 E-value=44 Score=29.26 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=45.8
Q ss_pred chhhhccccccccccccccccchHHHhhhhhhCchhcHHHHHHhhhhChHHHHHHhHhHhhhChhhhHHH
Q psy9520 65 VAGQLASSASSVTSVHSQKTVNRESVKRFHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC 134 (675)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~~krykeenpE~IRey~RKYyeKN~EKIKek 134 (675)
-+..||+..|+|++ +..-|...+|++|.-++--...--++.+++-.+-|+.-||..-.+.
T Consensus 7 taa~lA~t~s~V~a----------~ts~YL~tHP~vN~~~T~~~~q~p~~q~~a~v~~Yf~aNPqv~~dL 66 (101)
T 3may_A 7 AASEVARTVGSVAK----------SMGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASDL 66 (101)
T ss_dssp CHHHHHHHHHHHHH----------HHHHHHHHCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHH----------HHHHHHHhCCCHHHHHHHHHccCChHHHHHHHHHHHHhCcHHHHHH
Confidence 34455555555543 4556888999999999988877688899999999999999885443
No 3
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=24.61 E-value=11 Score=36.88 Aligned_cols=17 Identities=35% Similarity=0.972 Sum_probs=13.8
Q ss_pred hhccCCCC-cceeeeecc
Q psy9520 9 YSSLGEPH-WPVVIALFS 25 (675)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~ 25 (675)
.++.|.|| ||.|+|+++
T Consensus 91 L~a~g~pHsWp~~Lg~L~ 108 (315)
T 2ve7_A 91 MYTVGAPHTWPHIVAALV 108 (315)
T ss_dssp HHTTTSTTTHHHHHHHHH
T ss_pred hcCCCCCCcHHHHHHHHH
Confidence 45679999 999998764
No 4
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=17.17 E-value=39 Score=29.16 Aligned_cols=14 Identities=50% Similarity=0.880 Sum_probs=11.7
Q ss_pred CCcceeeeecccCC
Q psy9520 15 PHWPVVIALFSGNR 28 (675)
Q Consensus 15 ~~~~~~~~~~~~~~ 28 (675)
-.||.|.|||-|.+
T Consensus 59 EGwP~VYALFlqGr 72 (90)
T 2dbs_A 59 EGWPSVYALFLQGR 72 (90)
T ss_dssp SSSCEEEEEEETTE
T ss_pred CCChhHHHHHhCCc
Confidence 46999999997765
No 5
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=16.09 E-value=66 Score=26.94 Aligned_cols=27 Identities=30% Similarity=0.692 Sum_probs=24.0
Q ss_pred cchHHHhhhhhhCchhcHHHHHHhhhh
Q psy9520 85 VNRESVKRFHEKNPEANKDCVKRYKEK 111 (675)
Q Consensus 85 ~~~~~~~~~~~~~~~~~kd~~krykee 111 (675)
|+-|+|.++...-|-.-+||+.+++..
T Consensus 10 iTEe~VrryL~rkPmTt~dLl~KFK~r 36 (73)
T 1i27_A 10 VTEDAVRRYLTRKPMTTKDLLKKFQTK 36 (73)
T ss_dssp CCHHHHHHHHHHSCBCHHHHHHTSCHH
T ss_pred cCHHHHHHHHHcCCccHHHHHHHHHHh
Confidence 445999999999999999999999876
No 6
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=16.05 E-value=40 Score=24.61 Aligned_cols=16 Identities=31% Similarity=0.470 Sum_probs=8.3
Q ss_pred HHHhhhhChHHHHHHH
Q psy9520 165 VKRYKEKNPEVIRERT 180 (675)
Q Consensus 165 vRRwrEeNrEkIREr~ 180 (675)
.++|.++|++-|.++.
T Consensus 5 ~~~W~~EN~~ai~~~N 20 (36)
T 3hpw_C 5 AERWKAENQEGMAEVA 20 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555543
No 7
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Probab=12.58 E-value=4e+02 Score=23.09 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=21.7
Q ss_pred CCcceeeeecccCC-cCcc--cccccccccCCCCCccchhccc
Q psy9520 15 PHWPVVIALFSGNR-TNGH--FDLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 15 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 54 (675)
-+|-++|.--.|.- .+|. |++.-|-+--.+| |.|-|+..
T Consensus 35 ~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~P-P~v~f~t~ 76 (165)
T 2ucz_A 35 FIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSP-PKLTFTPS 76 (165)
T ss_dssp SEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC-CEEEESSC
T ss_pred cEEEEEEECCCCCCccCcEEEEEEECCccCCCCC-CEEEEeCC
Confidence 36776665444432 2443 4555565554444 77777764
No 8
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=12.19 E-value=29 Score=35.72 Aligned_cols=50 Identities=30% Similarity=0.502 Sum_probs=32.2
Q ss_pred hhhccCCCCcceeeee---cccC----CcCcccccccccccC-----CCCC-----ccchhcccccC
Q psy9520 8 LYSSLGEPHWPVVIAL---FSGN----RTNGHFDLLRPIDIH-----SSPL-----PQIDFLANREN 57 (675)
Q Consensus 8 ~~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~~~~~~~-----~~~~-----~~~~~~~~~~~ 57 (675)
|...+|.|.|+-+-.- -||+ ..-|.|--|||+-.. .||| ..|||+-=|||
T Consensus 91 L~Gavg~P~~~~~~~~~~~~~~ll~LRk~ldLyANvRP~k~~pg~~~~splk~~~~~~vD~vIVREn 157 (390)
T 3u1h_A 91 LLGAVGGPKWDQNPSELRPEKGLLGIRKGLDLFANLRPVKVYDSLADASPLKKEVIEGVDLVIVREL 157 (390)
T ss_dssp EEEECCCSTTTSSCCSSSSSCCHHHHHHHTTEEEEEEEEECCGGGTTSSSBCHHHHSSCEEEEEEEC
T ss_pred EECCcCCCCcCCCCcccCccchHHHHHHHhCCeEEEEEeeccCCccccCCcccccccCCcEEEEeeC
Confidence 5678899999754221 1332 122334448998653 4888 68999998887
No 9
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1
Probab=12.03 E-value=4.3e+02 Score=23.80 Aligned_cols=104 Identities=18% Similarity=0.289 Sum_probs=49.2
Q ss_pred CcceeeeecccCC-cCccc--ccccccccCCCCCccchhcccccCCCCCCCcchhhhccccc--cccccccccccchHHH
Q psy9520 16 HWPVVIALFSGNR-TNGHF--DLLRPIDIHSSPLPQIDFLANRENEFPPLPPVAGQLASSAS--SVTSVHSQKTVNRESV 90 (675)
Q Consensus 16 ~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 90 (675)
+|-++|.-..|.- .+|.| +|.-|-|.-.+| |.|-|+... |-|.--..|.+.-+.. .-+..++-.+|- .|+
T Consensus 61 ~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P-P~V~F~T~i---~HPNV~~~G~ICL~iL~~~WsP~~ti~~vL-~sI 135 (179)
T 1i7k_A 61 KWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA-PTVKFLTPC---YHPNVDTQGNISLDILKEKWSALYDVRTIL-LSI 135 (179)
T ss_dssp EEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSC-CEEEESSCC---CSTTBCTTCBBCCGGGTTTCCTTCCHHHHH-HHH
T ss_pred ccEEEEECCCCCCcCCCEEEEEEECCCcCCCCC-ceEEEecCC---ccCccccCCeEEcccCcCcCCCCCCHHHHH-HHH
Confidence 5766665444432 34544 445555544433 777777642 3322112344322211 111122222232 233
Q ss_pred hh-hhhhCch--hcHHHHHHhhhhChHHHHHHhHhHhhh
Q psy9520 91 KR-FHEKNPE--ANKDCVKRYKEKNPEVIRERTKRYHEK 126 (675)
Q Consensus 91 ~~-~~~~~~~--~~kd~~krykeenpE~IRey~RKYyeK 126 (675)
.. |.+-||+ +|.|.+.-| ++++......+.+..+
T Consensus 136 ~sll~~Pn~~~Pln~~aa~l~--~d~~~f~~~v~~~v~~ 172 (179)
T 1i7k_A 136 QSLLGEPNIDSPLNTHAAELW--KNPTAFKKYLQETYSK 172 (179)
T ss_dssp HHHHHSCCTTSCSCHHHHHHT--TSHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCcchhhHHHHHHh--hCHHHHHHHHHHHHHH
Confidence 33 4455554 677777777 6777666665555544
No 10
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A
Probab=11.67 E-value=4.6e+02 Score=22.61 Aligned_cols=38 Identities=29% Similarity=0.452 Sum_probs=21.2
Q ss_pred CcceeeeecccC-CcCccc--ccccccccCCCCCccchhccc
Q psy9520 16 HWPVVIALFSGN-RTNGHF--DLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 54 (675)
+|-++|.--.|. -.+|.| ++.-|-|.-.+| |+|-|+..
T Consensus 35 ~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P-P~v~f~t~ 75 (164)
T 3h8k_A 35 EWEALIMGPEDTCFEFGVFPAILSFPLDYPLSP-PKMRFTCE 75 (164)
T ss_dssp EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC-CEEEECSC
T ss_pred EEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCC-CEEEEcCC
Confidence 676666533332 234544 555566655554 78888764
Done!