Query psy9520
Match_columns 675
No_of_seqs 15 out of 17
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 21:45:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9520.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9520hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1y6la_ d.20.1.1 (A:) Ubiquiti 36.5 28 0.0021 27.7 5.7 52 15-70 32-86 (148)
2 d1wzva1 d.20.1.1 (A:2-151) Ubi 21.2 58 0.0042 25.8 4.9 38 16-54 32-71 (150)
3 d2dbsa1 d.374.1.1 (A:7-86) Hyp 20.4 14 0.001 29.2 0.9 15 15-29 53-67 (80)
4 d1z3da1 d.20.1.1 (A:2-150) Ubi 20.3 1E+02 0.0073 24.4 6.3 38 16-54 34-74 (149)
5 d2uyza1 d.20.1.1 (A:3-158) Ubi 18.1 96 0.007 25.0 5.7 39 15-54 37-78 (156)
6 d1k4ma_ c.26.1.3 (A:) Nicotina 16.2 9.6 0.0007 29.0 -1.0 18 20-37 4-24 (213)
7 d1c4zd_ d.20.1.1 (D:) Ubiquiti 15.4 1.1E+02 0.0078 24.1 5.3 38 16-54 31-70 (144)
8 d1j7db_ d.20.1.1 (B:) Ubiquiti 14.6 73 0.0053 25.3 4.0 39 15-54 32-73 (149)
9 d1y8xa1 d.20.1.1 (A:27-183) Ub 13.8 1.6E+02 0.011 23.7 6.0 46 8-54 25-72 (157)
10 d2f4wa1 d.20.1.1 (A:12-168) Ub 13.6 1.4E+02 0.01 23.8 5.6 37 16-53 32-71 (157)
No 1
>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}
Probab=36.49 E-value=28 Score=27.71 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=29.4
Q ss_pred CCcceeeeecc-cCCcCc--ccccccccccCCCCCccchhcccccCCCCCCCcchhhhc
Q psy9520 15 PHWPVVIALFS-GNRTNG--HFDLLRPIDIHSSPLPQIDFLANRENEFPPLPPVAGQLA 70 (675)
Q Consensus 15 ~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (675)
-+|=++|..-. |--.+| ||++.-|-|--.+| |++-|+.. -|-|.---.|.+.
T Consensus 32 ~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~p-P~v~f~t~---i~HPnv~~~G~iC 86 (148)
T d1y6la_ 32 YEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP-PKVTFRTR---IYHCNINSQGVIC 86 (148)
T ss_dssp TEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC-CEEEESSC---CCBTTBCTTCBBC
T ss_pred ceeceEEECCCCCCcCCCeEEEEEecCcccCCCC-cEEEEeCC---CcCceECCCCeEE
Confidence 45655554422 233344 56666777776665 89988854 3444433356554
No 2
>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}
Probab=21.18 E-value=58 Score=25.84 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=22.2
Q ss_pred CcceeeeecccCCcCcccc--cccccccCCCCCccchhccc
Q psy9520 16 HWPVVIALFSGNRTNGHFD--LLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 54 (675)
+|-++|..-+|--.+|-|. |.-|-|--.+| |.|-|+..
T Consensus 32 ~w~~iigp~~tpy~gg~f~~~i~fp~~YP~~p-P~v~f~t~ 71 (150)
T d1wzva1 32 VWHALLLPDQPPYHLKAFNLRISFPPEYPFKP-PMIKFTTK 71 (150)
T ss_dssp EEEEEECCCSTTGGGEEEEEEEECCTTTTSSC-CEEEESSC
T ss_pred EEEEEECCCCCCccCceeeEEEecCcCCccCC-ceeeccCC
Confidence 4777776555555566554 34444444444 78888765
No 3
>d2dbsa1 d.374.1.1 (A:7-86) Hypothetical protein TTHC002 {Thermus thermophilus [TaxId: 274]}
Probab=20.43 E-value=14 Score=29.19 Aligned_cols=15 Identities=47% Similarity=0.824 Sum_probs=12.7
Q ss_pred CCcceeeeecccCCc
Q psy9520 15 PHWPVVIALFSGNRT 29 (675)
Q Consensus 15 ~~~~~~~~~~~~~~~ 29 (675)
-.||.|.|||-|.|.
T Consensus 53 egwp~vyalfl~grp 67 (80)
T d2dbsa1 53 EGWPSVYALFLQGRP 67 (80)
T ss_dssp SSSCEEEEEEETTEE
T ss_pred cccHHHHHHHhCCCc
Confidence 369999999998764
No 4
>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}
Probab=20.32 E-value=1e+02 Score=24.36 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=25.2
Q ss_pred CcceeeeecccCC-cCc--ccccccccccCCCCCccchhccc
Q psy9520 16 HWPVVIALFSGNR-TNG--HFDLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 16 ~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~ 54 (675)
+|=++|..-.|.- .+| ||++.-|.+--.+| |.+-|+..
T Consensus 34 ~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~p-P~v~f~t~ 74 (149)
T d1z3da1 34 TWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP-PTVKFISK 74 (149)
T ss_dssp EEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC-CEEEESSC
T ss_pred hhceeEECCCCccccCCEEEEEEEecCcCCCCC-cEEEecCc
Confidence 7877776555533 334 66777777776666 88888764
No 5
>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}
Probab=18.11 E-value=96 Score=24.96 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=25.3
Q ss_pred CCcceeeeecccC-CcCc--ccccccccccCCCCCccchhccc
Q psy9520 15 PHWPVVIALFSGN-RTNG--HFDLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 54 (675)
-+|=++|..=+|. -.+| +|+|.-|-|--.+| |.|-|+..
T Consensus 37 ~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~p-P~v~f~t~ 78 (156)
T d2uyza1 37 MNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSP-PKCKFEPP 78 (156)
T ss_dssp EEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC-CEEEESSC
T ss_pred cEEEEEEEcCCCCCccCCEEEEEEeCCccccCCC-ceeeeccc
Confidence 3577777555554 2344 55667777777776 88888864
No 6
>d1k4ma_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN) adenylyltransferase {Escherichia coli [TaxId: 562]}
Probab=16.17 E-value=9.6 Score=28.96 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=13.7
Q ss_pred eeeecccC---CcCccccccc
Q psy9520 20 VIALFSGN---RTNGHFDLLR 37 (675)
Q Consensus 20 ~~~~~~~~---~~~~~~~~~~ 37 (675)
++|||.|. -|+||..++.
T Consensus 4 ~~AlfgGSFnP~h~GHl~~~~ 24 (213)
T d1k4ma_ 4 LQALFGGTFDPVHYGHLKPVE 24 (213)
T ss_dssp CEEEEEECCTTCCHHHHHHHH
T ss_pred cEEEEecCcCcCcHHHHHHHH
Confidence 68999986 4789976553
No 7
>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}
Probab=15.42 E-value=1.1e+02 Score=24.06 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=21.2
Q ss_pred CcceeeeecccCCcCcc--cccccccccCCCCCccchhccc
Q psy9520 16 HWPVVIALFSGNRTNGH--FDLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 54 (675)
||=++|+.=.|---+|- |+|.-|-|--.+ .|.|-|+..
T Consensus 31 ~w~~~igp~~tpY~gg~f~~~i~fp~~YP~~-pP~v~f~t~ 70 (144)
T d1c4zd_ 31 TWQGLIVPDNPPYDKGAFRIEINFPAEYPFK-PPKITFKTK 70 (144)
T ss_dssp EEEEEECCCSSSCCSCCEEEEEECCTTTTTS-CCEEEESSC
T ss_pred EEEEEECCCCcCccCCEEEEEEEecCcccCC-CceeeccCC
Confidence 78888754444444443 444445444433 477878754
No 8
>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}
Probab=14.59 E-value=73 Score=25.31 Aligned_cols=39 Identities=23% Similarity=0.405 Sum_probs=24.4
Q ss_pred CCcceeeeecccC-CcCc--ccccccccccCCCCCccchhccc
Q psy9520 15 PHWPVVIALFSGN-RTNG--HFDLLRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 15 ~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 54 (675)
-+|=++|..-.|. -.+| ||+|.-|-|--.+| |.|-|+..
T Consensus 32 ~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~p-P~v~f~t~ 73 (149)
T d1j7db_ 32 RYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA-PKVRFMTK 73 (149)
T ss_dssp TEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC-CEEEECSC
T ss_pred cEeeeEEECCcccccCCCEEEEEEecCCcccCCC-ceeeecCC
Confidence 3677777654443 3344 66777776666554 88888754
No 9
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}
Probab=13.83 E-value=1.6e+02 Score=23.72 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=28.7
Q ss_pred hhhccCCCCcceeeeecccCCcCccccc--ccccccCCCCCccchhccc
Q psy9520 8 LYSSLGEPHWPVVIALFSGNRTNGHFDL--LRPIDIHSSPLPQIDFLAN 54 (675)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 54 (675)
+.++-.--+|-|+|..-+|--.+|-|.+ .-|-|--.+ .|.+-|+..
T Consensus 25 ~~~~~~l~~w~~~i~p~~t~Y~gg~f~~~i~fp~~YP~~-pP~V~f~t~ 72 (157)
T d1y8xa1 25 FSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHD-PPKVKCETM 72 (157)
T ss_dssp CSSTTCTTEEEEEECCSSSTTTTBCEEEEEECCTTTTTS-CCEEEECSC
T ss_pred EcCCCcceEEEEEECCCCCCcCCCeEEEEEEecCCCCCC-Cceeeeccc
Confidence 3333445689999987777777776654 334444444 377777653
No 10
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Probab=13.56 E-value=1.4e+02 Score=23.78 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=22.4
Q ss_pred CcceeeeecccC-CcCcc--cccccccccCCCCCccchhcc
Q psy9520 16 HWPVVIALFSGN-RTNGH--FDLLRPIDIHSSPLPQIDFLA 53 (675)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~ 53 (675)
||=++|..-.|. -.+|. |+|.-|-|--.+| |.+-|+.
T Consensus 32 ~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p-P~v~f~t 71 (157)
T d2f4wa1 32 EWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP-PSIYMIT 71 (157)
T ss_dssp EEEEEEECCTTSTTTTCEEEEEEECCTTTTSSC-CEEEECS
T ss_pred eeeeEEECCCCccccCCEEEEEEeccCCcCCCC-CEEEeeC
Confidence 677776544442 23343 4556676766666 8888875
Done!