RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy9520
         (675 letters)



>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
            Provisional.
          Length = 1136

 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 125  EKNPEANKDCVKRYKEKN-PEVIRERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTK 181
            +   E   + +K + E N  E   E  +   E+N E N  ++  +  +E   E + E  +
Sbjct: 929  KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988

Query: 182  RYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 239
               E+N E N  ++  +  +E   E I E  + Y E+N E  ++ V+ Y E+N E I E 
Sbjct: 989  ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048

Query: 240  TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 299
             +   E+N E N   ++ Y E+N E I E  +   E+N E N        E+N E I E 
Sbjct: 1049 AEENVEENIEEN---IEEYDEENVEEIEENIEENIEENVEEN-------VEENVEEIEEN 1098

Query: 300  TKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHE 335
             +   E+N E N  ++  +  +E + E   E  + Y E
Sbjct: 1099 VEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136



 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 215  EKNPEANKDCVKRYKEKN-PEVIRERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTK 271
            +   E   + +K + E N  E   E  +   E+N E N  ++  +  +E   E + E  +
Sbjct: 929  KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988

Query: 272  RYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 329
               E+N E N  ++  +  +E   E I E  + Y E+N E  ++ V+ Y E+N E I E 
Sbjct: 989  ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048

Query: 330  TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 389
             +   E+N E N   ++ Y E+N E I E  +   E+N E N        E+N E I E 
Sbjct: 1049 AEENVEENIEEN---IEEYDEENVEEIEENIEENIEENVEEN-------VEENVEEIEEN 1098

Query: 390  TKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHE 425
             +   E+N E N  ++  +  +E + E   E  + Y E
Sbjct: 1099 VEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136



 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 305  EKNPEANKDCVKRYKEKN-PEVIRERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTK 361
            +   E   + +K + E N  E   E  +   E+N E N  ++  +  +E   E + E  +
Sbjct: 929  KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988

Query: 362  RYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 419
               E+N E N  ++  +  +E   E I E  + Y E+N E  ++ V+ Y E+N E I E 
Sbjct: 989  ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048

Query: 420  TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 479
             +   E+N E N   ++ Y E+N E I E  +   E+N E N        E+N E I E 
Sbjct: 1049 AEENVEENIEEN---IEEYDEENVEEIEENIEENIEENVEEN-------VEENVEEIEEN 1098

Query: 480  TKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHE 515
             +   E+N E N  ++  +  +E + E   E  + Y E
Sbjct: 1099 VEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136



 Score = 43.2 bits (101), Expect = 5e-04
 Identities = 60/218 (27%), Positives = 99/218 (45%), Gaps = 17/218 (7%)

Query: 395  EKNPEANKDCVKRYKEKN-PEVIRERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTK 451
            +   E   + +K + E N  E   E  +   E+N E N  ++  +  +E   E + E  +
Sbjct: 929  KNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVE 988

Query: 452  RYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 509
               E+N E N  ++  +  +E   E I E  + Y E+N E  ++ V+ Y E+N E I E 
Sbjct: 989  ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048

Query: 510  TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRER 569
             +   E+N E N   ++ Y E+N E I E  +   E+N E N        E+N E I E 
Sbjct: 1049 AEENVEENIEEN---IEEYDEENVEEIEENIEENIEENVEEN-------VEENVEEIEEN 1098

Query: 570  TKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHE 605
             +   E+N E N  ++  +  +E + E   E  + Y E
Sbjct: 1099 VEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136



 Score = 40.2 bits (93), Expect = 0.004
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 14/160 (8%)

Query: 88   ESVKRFHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIR 147
            E+V+   E+N E N +  +  +E   E I E  + Y E+N E  ++ V+ Y E+N E I 
Sbjct: 989  ENVEENVEENVEENIE--ENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIE 1046

Query: 148  ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIR 207
            E  +   E+N E N   ++ Y E+N E I E  +   E+N E N        E+N E I 
Sbjct: 1047 ENAEENVEENIEEN---IEEYDEENVEEIEENIEENIEENVEEN-------VEENVEEIE 1096

Query: 208  ERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHE 245
            E  +   E+N E N  ++  +  +E + E   E  + Y E
Sbjct: 1097 ENVEENVEENAEENAEENAEENAEEYDDENPEEHNEEYDE 1136



 Score = 39.0 bits (90), Expect = 0.009
 Identities = 56/212 (26%), Positives = 101/212 (47%), Gaps = 10/212 (4%)

Query: 435  VKRYKEKNPEVIRERTKRYHEKNPEAN--KDCVKRYKEKNPEVIRERTKRYHEKNPEANK 492
            +K   E  PE ++E  +   E++ E N  +D  +  +E   E + E  +   E+N E N 
Sbjct: 928  LKNQNENVPEHLKEHAEANIEEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENV 987

Query: 493  DCVKRYKEKNPEVIRERTKRYHEKNPEAN-KDCVKRYKEKNPEVIRERTKRYHEKNPEAN 551
            +  +  +E   E + E  +   E+N E N ++ V+ Y E+N E + E  + Y E+N E  
Sbjct: 988  E--ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEI 1045

Query: 552  KDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEAN 611
            ++  +   E+N   I E  + Y E+N E  ++ ++   E+N E   E      E+N E N
Sbjct: 1046 EENAEENVEEN---IEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEEN 1102

Query: 612  KDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 643
             +  +  +E   E   E  + Y ++NPE + +
Sbjct: 1103 VE--ENAEENAEENAEENAEEYDDENPEEHNE 1132


>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
           metabolism].
          Length = 663

 Score = 30.3 bits (69), Expect = 4.3
 Identities = 20/89 (22%), Positives = 36/89 (40%), Gaps = 10/89 (11%)

Query: 88  ESVKRFHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIR 147
            +V+    K   A  +    YK+K PE+  E  +R + + P      + ++ E N + I 
Sbjct: 297 RAVEERGAKAEAAWNELFAAYKKKYPELAAEFERRLNGELPANWAAFLPKF-EANGKSIA 355

Query: 148 ERTKRYHEKNPEANKDCVKRYKEKNPEVI 176
            R          A+   +    +K PE+I
Sbjct: 356 TRK---------ASGKALNALAKKLPELI 375


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,645,379
Number of extensions: 3649027
Number of successful extensions: 6334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6078
Number of HSP's successfully gapped: 240
Length of query: 675
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 572
Effective length of database: 6,369,140
Effective search space: 3643148080
Effective search space used: 3643148080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (27.9 bits)