RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9520
         (675 letters)



>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 40.6 bits (94), Expect = 0.002
 Identities = 47/430 (10%), Positives = 111/430 (25%), Gaps = 120/430 (27%)

Query: 311 NKDCVKRYKEKNPEVIRERTKRYHEKNPEA---NKDCVKRYKEKNPEVIRERTKR----Y 363
            KD +  +++     +     +  +  P++    ++       K+       T R     
Sbjct: 18  YKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---SGTLRLFWTL 71

Query: 364 HEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRY 423
             K  E  +  V+     N + +     +  ++ P       + Y E+     R+R    
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMT---RMYIEQ-----RDRL--- 119

Query: 424 HEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEAN----------KDCV-------K 466
           +  N    K  V R      +   +  +   E  P  N          K  V        
Sbjct: 120 YNDNQVFAKYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 467 RYKEKNP---------------EVIRERTKRYH--EKNPEANKDCVKRYKEKNPEVIRER 509
           + + K                  V+    K  +  + N  +  D     K      I+  
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAE 233

Query: 510 TKRYHEKNPEANKDCVKRYKE--------KNPEVIRE-----R---TKRYHEKNPEANKD 553
            +R  +          K Y+         +N +         +   T R+     +   D
Sbjct: 234 LRRLLKS---------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTD 279

Query: 554 CVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 613
            +      +  +         ++        +    +  P  +          NP     
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-------NPRRLSI 332

Query: 614 CVKRYKEKNPEVIR-ERTKRY-HEKNPEANKDCV---------KRYKDIVKLHRKPPKSG 662
             +  ++    +   +  K    +K     +  +         K +  +       P S 
Sbjct: 333 IAESIRD---GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----PPSA 385

Query: 663 KMPPTVVPVL 672
            +P  ++ ++
Sbjct: 386 HIPTILLSLI 395



 Score = 36.8 bits (84), Expect = 0.026
 Identities = 47/418 (11%), Positives = 97/418 (23%), Gaps = 132/418 (31%)

Query: 86  NRESVKRFHEKNPEANKDCVK---RYKEKNPEVIRERTKRYHEK----NPEANKDCVKRY 138
             E V++F E+    N   +    + +++ P ++        ++    N    K  V R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR- 133

Query: 139 KEKNPEVIRERTKRYHEKNPEAN----------KDCV-------KRYKEKNP-------- 173
                +   +  +   E  P  N          K  V        + + K          
Sbjct: 134 ----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 174 -------EVIRERTKRYH--EKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC 224
                   V+    K  +  + N  +  D     K      I+   +R  +         
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKS-------- 240

Query: 225 VKRYKE--------KNPEVIRE-----R---TKRYHEKNPEANKDCVKRYKEKNPEVIRE 268
            K Y+         +N +         +   T R+     +   D +      +  +   
Sbjct: 241 -KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-----KQVTDFLSAATTTHISLDHH 294

Query: 269 RTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRE 328
                 ++        +    +  P  +          NP       +  ++        
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-------NPRRLSIIAESIRDG-----LA 342

Query: 329 RTKRYHEKNPEANKDCVKR-YKEKNPEVIRERTKRYHE-----KN---PE---------- 369
               +   N +     ++       P   R   K +        +   P           
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 370 --------ANKDCVKRYKEKNPEVIRERTKRYH----------EKNPEANKDCVKRYK 409
                    NK       EK P+   E T              E     ++  V  Y 
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPK---ESTISIPSIYLELKVKLENEYALHRSIVDHYN 454


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.6 bits (79), Expect = 0.12
 Identities = 18/101 (17%), Positives = 24/101 (23%), Gaps = 36/101 (35%)

Query: 5   PLELYSS-LG------EPH-----WPVVIALFSGNRTNGHF--DLLRPIDIHS--SPLPQ 48
           P EL    LG      EP        V+            F    L   DIH+  + L Q
Sbjct: 57  PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL------TEFENCYLEGNDIHALAAKLLQ 110

Query: 49  ID--------------FLANRENEFPPLPPVAGQLASSASS 75
            +                A    + P        L  +   
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151


>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
           hydrolysis, GDP, GMP, dynamin related, large GTPase
           family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
           SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
           2bc9_A* 2d4h_A*
          Length = 592

 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 109 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 168
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 169 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 228
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 229 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 288
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 289 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 347
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 348 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 402
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 139 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 198
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 199 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 258
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 259 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 318
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 319 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 377
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 378 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 432
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 169 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 228
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 229 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 288
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 289 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 348
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 349 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 407
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 408 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 462
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 199 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 258
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 259 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 318
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 319 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 378
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 379 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 437
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 438 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 492
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 229 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 288
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 289 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 348
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 349 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 408
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 409 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 467
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 468 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 522
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 259 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 318
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 319 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 378
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 379 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 438
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 439 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 497
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 498 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 552
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 289 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 348
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 349 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 408
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 409 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 468
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 469 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 527
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 528 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 582
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 319 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 378
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 379 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 438
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 439 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 498
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 499 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 557
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 558 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 612
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 31.8 bits (71), Expect = 0.76
 Identities = 33/295 (11%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 349 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 408
               P +          +N  A +  +  Y+++  + ++  T+     + +   D  +  
Sbjct: 306 SGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTE-----SLQELLDLHRDS 360

Query: 409 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 468
           + +  EV    +           KD    ++++    + ++   + ++N EA+       
Sbjct: 361 EREAIEVFIRSSF----------KDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DR 406

Query: 469 KEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRY 528
                +VI    +   +    +     + + +K  ++ ++    Y E       + + + 
Sbjct: 407 CSGLLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQT 463

Query: 529 KEKNPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKR 587
             K+ E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + 
Sbjct: 464 YLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERS 523

Query: 588 YKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 642
           Y+E   ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 524 YQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 30.7 bits (68), Expect = 1.9
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 23/267 (8%)

Query: 92  RFHEKNPEANKDCVKRYKE------KNPEVIRERTKRYHEKNPE---------ANKDCVK 136
               +N  A +  +  Y++      + P    +     H  +           + KD   
Sbjct: 319 LAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSEREAIEVFIRSSFKDVDH 378

Query: 137 RYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVK 196
            ++++    + ++   + ++N EA+            +VI    +   +    +     +
Sbjct: 379 LFQKELAAQLEKKRDDFCKQNQEASS----DRCSGLLQVIFSPLEEEVKAGIYSKPGGYR 434

Query: 197 RYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC-V 255
            + +K  ++ ++    Y E       + + +   K+ E + +   +  +   E  K+  V
Sbjct: 435 LFVQKLQDLKKKY---YEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEV 491

Query: 256 KRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCV 315
           +R K ++ +   +       KN +  +   + Y+E   ++  +      +   E  +   
Sbjct: 492 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551

Query: 316 KRYKEKNPEVIRERTKRYHEKNPEANK 342
            + +E+   +     K       E   
Sbjct: 552 LKLQEQEQLLKEGFQKESRIMKNEIQD 578



 Score = 30.3 bits (67), Expect = 2.4
 Identities = 28/232 (12%), Positives = 82/232 (35%), Gaps = 11/232 (4%)

Query: 82  QKTVNRESVKRFHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEK 141
            +   RE+++ F      + KD    ++++    + ++   + ++N EA+          
Sbjct: 357 HRDSEREAIEVFIRS---SFKDVDHLFQKELAAQLEKKRDDFCKQNQEASS----DRCSG 409

Query: 142 NPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEK 201
             +VI    +   +    +     + + +K  ++ ++    Y E       + + +   K
Sbjct: 410 LLQVIFSPLEEEVKAGIYSKPGGYRLFVQKLQDLKKKY---YEEPRKGIQAEEILQTYLK 466

Query: 202 NPEVIRERTKRYHEKNPEANKDC-VKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKE 260
           + E + +   +  +   E  K+  V+R K ++ +   +       KN +  +   + Y+E
Sbjct: 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQE 526

Query: 261 KNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANK 312
              ++  +      +   E  +    + +E+   +     K       E   
Sbjct: 527 HLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578


>3may_A RV0203, possible exported protein; helical protein, heme-binding
           protein; 2.50A {Mycobacterium tuberculosis}
          Length = 101

 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 120 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 163
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 150 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 193
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 180 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 223
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 210 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 253
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 240 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 283
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 270 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 313
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 300 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 343
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 330 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 373
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 360 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 403
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 390 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 433
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 420 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 463
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 450 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 493
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 480 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 523
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 510 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 553
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 540 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 583
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 570 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 613
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65



 Score = 28.8 bits (64), Expect = 1.6
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 600 TKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKD 643
              Y + +PE N+      +++         K + E NP+   D
Sbjct: 22  MGDYLDSHPETNQVMTAVLQQQVGPGSVASLKAHFEANPKVASD 65


>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for
           structural genomics of infec diseases, csgid; 2.01A
           {Staphylococcus aureus subsp}
          Length = 341

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 10/94 (10%), Positives = 36/94 (38%), Gaps = 8/94 (8%)

Query: 590 EKNPEVIRERTKRYHE-----KNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDC 644
           +++ +V +   + Y +      + + + D +  + +++ +V+ +        +       
Sbjct: 248 DQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFKQSRDVLTQSAAWTSYGDLTIKPSG 307

Query: 645 VKRYKDIVKLH---RKPPKSGKMPPTVVPVLTKS 675
            +    +VK H     P     + P++    ++S
Sbjct: 308 YQEITTLVKQHHLFNPPAYDDFVEPSLYKEASRS 341


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 113 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 165
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 166 KRYKEKNPE 174
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 143 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 195
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 196 KRYKEKNPE 204
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 173 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 225
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 226 KRYKEKNPE 234
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 203 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 255
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 256 KRYKEKNPE 264
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 233 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 285
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 286 KRYKEKNPE 294
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 263 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 315
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 316 KRYKEKNPE 324
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 293 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 345
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 346 KRYKEKNPE 354
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 323 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 375
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 376 KRYKEKNPE 384
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 353 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 405
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 406 KRYKEKNPE 414
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 383 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 435
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 436 KRYKEKNPE 444
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 413 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 465
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 466 KRYKEKNPE 474
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 443 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 495
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 496 KRYKEKNPE 504
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 473 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 525
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 526 KRYKEKNPE 534
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 503 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 555
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 556 KRYKEKNPE 564
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 533 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 585
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 586 KRYKEKNPE 594
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 29.4 bits (65), Expect = 3.0
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 563 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKDCV 615
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+   
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142

Query: 616 KRYKEKNPE 624
           K + ++   
Sbjct: 143 KAFYQQPDA 151



 Score = 28.2 bits (62), Expect = 5.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 593 PEVIR----ERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE---KNPEANKD 643
           PE IR    E+ KR  E +  A+K   + ++EK  + + E  +R  E   KN   N+ 
Sbjct: 84  PESIRKWREEQRKRLQELD-AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140


>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB
           domain, apoptosis, cytoplasm, DNA-binding, hydrolase,
           metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
          Length = 390

 Score = 29.0 bits (64), Expect = 5.2
 Identities = 18/127 (14%), Positives = 35/127 (27%), Gaps = 20/127 (15%)

Query: 18  PVVIALFSGNRTNGHFDLLRPIDIHSSPLPQIDFLANRENEFPPLPPV----------AG 67
           P+V+        + HF  L  +      +  +  L NR+        V            
Sbjct: 267 PIVLGY-----DSHHFVPLVTLKDSGPEIRAVP-LVNRDRGRFEDLKVHFLTDPENEMKE 320

Query: 68  QLASSASSVTSVHSQKTVNRESV----KRFHEKNPEANKDCVKRYKEKNPEVIRERTKRY 123
           +L      V  +  Q   +  +      +  E N     + V  Y E      ++  +  
Sbjct: 321 KLLKEYLMVIEIPVQGWDHGTTHLINAAKLDEANLPKEINLVDDYFELVQHEYKKWQENS 380

Query: 124 HEKNPEA 130
            +   E 
Sbjct: 381 EQGRREG 387


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.129    0.379 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,875,173
Number of extensions: 711005
Number of successful extensions: 3739
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3521
Number of HSP's successfully gapped: 241
Length of query: 675
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 575
Effective length of database: 3,909,693
Effective search space: 2248073475
Effective search space used: 2248073475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.0 bits)