RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9520
(675 letters)
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 114 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 173
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 174 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 218
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 144 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 203
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 204 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 248
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 174 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 233
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 234 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 278
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 204 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 263
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 264 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 308
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 234 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 293
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 294 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 338
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 264 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 323
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 324 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 368
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 294 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 353
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 354 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 398
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 324 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 383
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 384 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 428
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 354 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 413
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 414 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 458
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 384 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 443
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 444 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 488
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 414 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 473
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 474 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 518
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 444 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 503
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 504 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 548
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 474 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 533
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 534 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 578
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 504 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 563
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 564 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 608
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 29.1 bits (65), Expect = 1.9
Identities = 10/105 (9%), Positives = 31/105 (29%), Gaps = 4/105 (3%)
Query: 534 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNP 593
I+++ H A + V ++ H + +
Sbjct: 330 NGIQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSY 385
Query: 594 EVIRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 638
++ +++ +++ P +D ++ K P + E +
Sbjct: 386 TTFKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
Score = 28.7 bits (64), Expect = 2.8
Identities = 10/103 (9%), Positives = 30/103 (29%), Gaps = 4/103 (3%)
Query: 86 NRESVKRFHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNPEANKDCVKRYKEKNPEV 145
++ V H A + V ++ H + +
Sbjct: 332 IQKKVLEQHAT---AYNEEVVA-LPVGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTT 387
Query: 146 IRERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHEKNP 188
++ +++ +++ P +D ++ K P + E +
Sbjct: 388 FKKYSEQVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKR 430
>d2pmra1 a.8.11.1 (A:3-77) Uncharacterized protein MTH1690
{Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 75
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 117 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 155
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 147 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 185
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 177 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 215
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 207 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 245
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 237 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 275
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 267 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 305
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 297 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 335
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 327 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 365
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 357 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 395
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 387 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 425
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 417 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 455
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 447 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 485
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 477 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 515
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 507 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 545
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 537 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 575
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 567 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 605
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Score = 25.4 bits (56), Expect = 6.6
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 597 RERTKRYHEKNPEANKDCVKRYKEKNPEVIRERTKRYHE 635
RER ++ E + + + E + ER Y +
Sbjct: 2 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRD 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.129 0.379
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,769,033
Number of extensions: 151460
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 106
Length of query: 675
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 584
Effective length of database: 1,158,166
Effective search space: 676368944
Effective search space used: 676368944
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.4 bits)