BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9521
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ 63
L++ K ++ E +L+LGLDNAGKTT L K + G + I+ T+G NI
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTIL--------KKFNGEDVDTISPTLGFNIKT 56
Query: 64 IDINTVRLNFWDLGGQLELQSLW 86
++ +LN WD+GGQ L+S W
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYW 79
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ 63
L++ K ++ E +L+LGLDNAGKTT L K + G + I+ T+G NI
Sbjct: 5 LLTILKKMKQKERELRLLMLGLDNAGKTTIL--------KKFNGEDVDTISPTLGFNIKT 56
Query: 64 IDINTVRLNFWDLGGQLELQSLW 86
++ +LN WD+GGQ L+S W
Sbjct: 57 LEHRGFKLNIWDVGGQKSLRSYW 79
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 56.6 bits (135), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ 63
L++ K ++ E +L+LGLDNAGKTT L K + G + I+ T+G NI
Sbjct: 3 LLTILKKMKQKERELRLLMLGLDNAGKTTIL--------KKFNGEDIDTISPTLGFNIKT 54
Query: 64 IDINTVRLNFWDLGGQLELQSLW 86
++ +LN WD+GGQ L+S W
Sbjct: 55 LEHRGFKLNIWDVGGQKSLRSYW 77
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In
Complex With Unc119a
Length = 189
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LGLDNAGKTT L K + S IT T G NI + +LN WD+
Sbjct: 17 EVRILLLGLDNAGKTTLL--------KQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 68
Query: 77 GGQLELQSLW 86
GGQ +++ W
Sbjct: 69 GGQRKIRPYW 78
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LGLDNAGKTT L K + S IT T G NI + +LN WD+
Sbjct: 16 EVRILLLGLDNAGKTTLL--------KQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 67
Query: 77 GGQLELQSLW 86
GGQ +++ W
Sbjct: 68 GGQRKIRPYW 77
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LGLDNAGKTT L K + S IT T G NI + +LN WD+
Sbjct: 4 EVRILLLGLDNAGKTTLL--------KQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 77 GGQLELQSLW 86
GGQ +++ W
Sbjct: 56 GGQRKIRPYW 65
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 12 MLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRL 71
+ E V+I+GLDNAGKTT L +F+ N + T+G N+ +I IN R
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTIL----YQFSMN----EVVHTSPTIGSNVEEIVINNTRF 62
Query: 72 NFWDLGGQLELQSLWD 87
WD+GGQ L+S W+
Sbjct: 63 LMWDIGGQESLRSSWN 78
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 12 MLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRL 71
+ E V+I+GLDNAGKTT L +F+ N + T+G N+ +I IN R
Sbjct: 11 LFNHQEHKVIIVGLDNAGKTTIL----YQFSMN----EVVHTSPTIGSNVEEIVINNTRF 62
Query: 72 NFWDLGGQLELQSLWD 87
WD+GGQ L+S W+
Sbjct: 63 LMWDIGGQESLRSSWN 78
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
E V+I+GLDNAGKTT L +F+ N + T+G N+ +I IN R WD
Sbjct: 21 QEHKVIIVGLDNAGKTTIL----YQFSMN----EVVHTSPTIGSNVEEIVINNTRFLMWD 72
Query: 76 LGGQLELQSLWD 87
+GGQ L+S W+
Sbjct: 73 IGGQESLRSSWN 84
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 52.0 bits (123), Expect = 9e-08, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 12/76 (15%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVR 70
L E +L+LGLD AGKTT L YK +TT TVG N+ + V+
Sbjct: 318 LSNKEMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVK 367
Query: 71 LNFWDLGGQLELQSLW 86
N WD+GGQ +++ LW
Sbjct: 368 FNVWDVGGQDKIRPLW 383
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 8/72 (11%)
Query: 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
E V+I+GLDNAGKTT L +F+ N + T+G N+ +I IN R WD
Sbjct: 20 QEHKVIIVGLDNAGKTTIL----YQFSMN----EVVHTSPTIGSNVEEIVINNTRFLMWD 71
Query: 76 LGGQLELQSLWD 87
+GGQ L+S W+
Sbjct: 72 IGGQESLRSSWN 83
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L+LGLDNAGKTT L K + G + I+ T+G NI ++ +LN WD+GG
Sbjct: 4 LLMLGLDNAGKTTIL--------KKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGL 55
Query: 80 LELQSLW 86
L+S W
Sbjct: 56 KSLRSYW 62
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LGLDNAGKTT L K + S IT T G NI + +LN WD+
Sbjct: 4 EVRILLLGLDNAGKTTLL--------KQLASEDISHITPTQGFNIKSVQSQGFKLNVWDI 55
Query: 77 GGQLELQSLW 86
GG +++ W
Sbjct: 56 GGLRKIRPYW 65
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 12/95 (12%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNI 61
S + + E +L++GLD AGKTT L YK ITT T+G N+
Sbjct: 4 FASKLFSNLFGNKEMRILMVGLDGAGKTTVL----------YKLKLGEVITTIPTIGFNV 53
Query: 62 GQIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
+ + WD+GGQ ++SLW R+ GV
Sbjct: 54 ETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 12/94 (12%)
Query: 5 VSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIG 62
S + + E +L++GLD AGKTT L YK ITT T+G N+
Sbjct: 5 ASKLFSNLFGNKEMRILMVGLDGAGKTTVL----------YKLKLGEVITTIPTIGFNVE 54
Query: 63 QIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
+ + WD+GGQ ++SLW R+ GV
Sbjct: 55 TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGV 88
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1
Complexed With Gdp, Monomeric Crystal Form
Length = 181
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 12/98 (12%)
Query: 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVG 58
M + + +K + K E +L++GLD AGKTT L YK +TT T+G
Sbjct: 1 MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIG 50
Query: 59 LNIGQIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
N+ ++ + WD+GGQ +++ LW ++ G+
Sbjct: 51 FNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQ 63
S F K E +LILGLD AGKTT L Y+ +TT T+G N+
Sbjct: 7 SMFDKLWGSNKELRILILGLDGAGKTTIL----------YRLQIGEVVTTKPTIGFNVET 56
Query: 64 IDINTVRLNFWDLGGQLELQSLW 86
+ ++LN WDLGGQ ++ W
Sbjct: 57 LSYKNLKLNVWDLGGQTSIRPYW 79
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 12/93 (12%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI 66
++K + K+E + ++GL +GKTT++ A +F ++ + TVG N+ +I
Sbjct: 22 WFKALFWKEEMELTLVGLQYSGKTTFVNVIASGQFNED--------MIPTVGFNMRKITK 73
Query: 67 NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREV 99
V + WD+GGQ +S+W+ R C GV +
Sbjct: 74 GNVTIKLWDIGGQPRFRSMWE---RYCRGVSAI 103
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+,
And Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +L+LGLD AGKTT L YK +TT TVG N+ + V+ N W
Sbjct: 13 EMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 75 DLGGQLELQSLW 86
D+GGQ +++ LW
Sbjct: 63 DVGGQDKIRPLW 74
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +L+LGLD AGKTT L YK +TT TVG N+ + V+ N W
Sbjct: 12 EMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 61
Query: 75 DLGGQLELQSLW 86
D+GGQ +++ LW
Sbjct: 62 DVGGQDKIRPLW 73
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 5 VSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIG 62
VS + + +K + +L++GLD AGKTT L YK +TT T+G N+
Sbjct: 5 VSRLFNRLFQKKDVRILMVGLDAAGKTTIL----------YKVKLGEVVTTIPTIGFNVE 54
Query: 63 QIDINTVRLNFWDLGGQLELQSLW 86
++ + WD+GGQ +++ LW
Sbjct: 55 TVEFRNISFTVWDVGGQDKIRPLW 78
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 12/95 (12%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNI 61
+ + +K + K E +L++GLD AGKTT L YK +TT T+G N+
Sbjct: 3 IFANLFKGLFGKKEMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNV 52
Query: 62 GQIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
++ + WD+GGQ +++ LW ++ G+
Sbjct: 53 ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 87
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 8/61 (13%)
Query: 26 DNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85
DNAGKTT L K + G + I+ T+G NI ++ +LN WD+GGQ L+S
Sbjct: 27 DNAGKTTIL--------KKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSY 78
Query: 86 W 86
W
Sbjct: 79 W 79
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L+LGLD AGKTT L YK +TT TVG N+ + V+ N WD+G
Sbjct: 3 ILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 52
Query: 78 GQLELQSLW 86
GQ +++ LW
Sbjct: 53 GQDKIRPLW 61
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L+LGLD AGKTT L YK +TT TVG N+ + V+ N WD+G
Sbjct: 3 ILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 52
Query: 78 GQLELQSLW 86
GQ +++ LW
Sbjct: 53 GQDKIRPLW 61
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop
Core Complex
Length = 164
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L++GLD AGKTT L YK ITT T+G N+ + + WD+G
Sbjct: 3 ILMVGLDGAGKTTVL----------YKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVG 52
Query: 78 GQLELQSLWDKDIRDCMGV 96
GQ ++SLW R+ GV
Sbjct: 53 GQDRIRSLWRHYYRNTEGV 71
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQID 65
+ + K E +L++GLD AGKTT L YK +TT T+G N+ ++
Sbjct: 11 LFSRLFAKKEMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVETVE 60
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
+ WD+GGQ +++ LW ++ G+
Sbjct: 61 YKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 91
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 37/69 (53%), Gaps = 12/69 (17%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L LGLD AGKTT L YK +TT TVG N+ + V+ N WD+G
Sbjct: 3 ILXLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVG 52
Query: 78 GQLELQSLW 86
GQ +++ LW
Sbjct: 53 GQDKIRPLW 61
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 8/72 (11%)
Query: 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
E V+I+GLDNAGKTT L +F N + T+G N+ +I + WD
Sbjct: 15 QEHKVIIVGLDNAGKTTIL----YQFLMN----EVVHTSPTIGSNVEEIVVKNTHFLMWD 66
Query: 76 LGGQLELQSLWD 87
+GGQ L+S W+
Sbjct: 67 IGGQESLRSSWN 78
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 47/86 (54%), Gaps = 12/86 (13%)
Query: 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNF 73
K+E + ++GL +GKTT++ A +F+++ + TVG N+ ++ V +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFSED--------MIPTVGFNMRKVTKGNVTIKI 71
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREV 99
WD+GGQ +S+W+ R C GV +
Sbjct: 72 WDIGGQPRFRSMWE---RYCRGVNAI 94
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 12/94 (12%)
Query: 5 VSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIG 62
+S + + K + +L++GLD AGKTT L YK +TT T+G N+
Sbjct: 5 ISSLFSRLFGKKQMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVE 54
Query: 63 QIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
++ + WD+GGQ ++ LW ++ G+
Sbjct: 55 TVEYKNICFTVWDVGGQDRIRPLWKHYFQNTQGL 88
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNF 73
K+E + ++GL +GKTT++ A +F ++ + TVG N+ +I V +
Sbjct: 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNED--------MIPTVGFNMRKITKGNVTIKL 71
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREV 99
WD+GGQ +S+W+ R C GV +
Sbjct: 72 WDIGGQPRFRSMWE---RYCRGVSAI 94
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +LILGLD AGKTT L Y+ +TT T+G N+ + ++ W
Sbjct: 2 EMRILILGLDGAGKTTIL----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVW 51
Query: 75 DLGGQLELQSLW 86
DLGGQ ++ W
Sbjct: 52 DLGGQTSIRPYW 63
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 12/84 (14%)
Query: 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLN 72
K E +L++GLD AGKTT L YK +TT T+G N+ ++ +
Sbjct: 163 KKEMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVETVEYKNISFT 212
Query: 73 FWDLGGQLELQSLWDKDIRDCMGV 96
WD+GGQ +++ LW ++ G+
Sbjct: 213 VWDVGGQDKIRPLWRHYFQNTQGL 236
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic
Kinesin-Like Protein 1) Complex
Length = 172
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +L+LGLD AGKTT L YK +TT TVG N+ + V+ N W
Sbjct: 2 EMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 51
Query: 75 DLGGQLELQSLW 86
D+GG +++ LW
Sbjct: 52 DVGGLDKIRPLW 63
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +L+LGLD AGKTT L YK +TT TVG N+ + V+ N W
Sbjct: 13 EMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 62
Query: 75 DLGGQLELQSLW 86
D+GG +++ LW
Sbjct: 63 DVGGLDKIRPLW 74
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 38/72 (52%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +L+LGLD AGKTT L YK +TT TVG N+ + V+ N W
Sbjct: 3 EMRILMLGLDAAGKTTIL----------YKLKLGQSVTTIPTVGFNVETVTYKNVKFNVW 52
Query: 75 DLGGQLELQSLW 86
D+GG +++ LW
Sbjct: 53 DVGGLDKIRPLW 64
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNI 61
S + + E +L++GLD AGKTT L YK ITT T+G N+
Sbjct: 4 FASKLFSNLFGNKEMRILMVGLDGAGKTTVL----------YKLKLGEVITTIPTIGFNV 53
Query: 62 GQIDINTVRLNFWDLGGQLELQSLW 86
+ + WD+GGQ ++SLW
Sbjct: 54 ECVQYCNISFTVWDVGGQDRIRSLW 78
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 12/77 (15%)
Query: 12 MLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTV 69
+L K E +L++GLD AGKT+ L YK +TT T+G N+ ++ +
Sbjct: 12 LLGKKEMRILMVGLDAAGKTSIL----------YKLKLGEIVTTIPTIGFNVETVEYKNI 61
Query: 70 RLNFWDLGGQLELQSLW 86
WD+GGQ +++ LW
Sbjct: 62 SFTVWDVGGQDKIRPLW 78
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQID 65
+ + K + +L++GLD AGKTT L YK +TT T+G N+ ++
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVETVE 69
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
+ WD+GGQ +++ LW ++ G+
Sbjct: 70 YKNICFTVWDVGGQDKIRPLWRHYFQNTQGL 100
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed
With Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain
Carrying The Mutation Of The Catalytic Glutamate To
Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And
A Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L++GLD AGKTT L YK +TT T+G N+ ++ + WD+G
Sbjct: 3 ILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 52
Query: 78 GQLELQSLWDKDIRDCMGV 96
GQ +++ LW ++ G+
Sbjct: 53 GQDKIRPLWRHYFQNTQGL 71
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFW 74
K + V++ GLDN+GKTT + K + + IT TVG N+ + V +
Sbjct: 15 KTKLQVVMCGLDNSGKTTIINQVKPAQS------SSKHITATVGYNVETFEKGRVAFTVF 68
Query: 75 DLGGQLELQSLWD 87
D+GG + + LW+
Sbjct: 69 DMGGAKKFRGLWE 81
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain
In Complex With Arl1
Length = 166
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +LILGLD AGKTT L Y+ +TT T+G N+ + ++ W
Sbjct: 4 EMRILILGLDGAGKTTIL----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVW 53
Query: 75 DLGGQLELQSLW 86
DLGG ++ W
Sbjct: 54 DLGGLTSIRPYW 65
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 12/72 (16%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFW 74
E +LILGLD AGKTT L Y+ +TT T+G N+ + ++ W
Sbjct: 7 EXRILILGLDGAGKTTIL----------YRLQVGEVVTTIPTIGFNVETVTYKNLKFQVW 56
Query: 75 DLGGQLELQSLW 86
DLGG ++ W
Sbjct: 57 DLGGLTSIRPYW 68
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active
Fragment Of Sec31
Length = 167
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L LGLDNAGKTT L K + P+ T+ L IG I T +DLGG
Sbjct: 4 LLFLGLDNAGKTTLLHMLK---NDRLATLQPTWHPTSEELAIGNIKFTT-----FDLGGH 55
Query: 80 LELQSLWDKDIRDCMGV 96
++ + LW + G+
Sbjct: 56 IQARRLWKDYFPEVNGI 72
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L LGLDNAGKTT L K + P+ T+ L IG I T +DLGG
Sbjct: 26 LLFLGLDNAGKTTLLHMLK---NDRLATLQPTWHPTSEELAIGNIKFTT-----FDLGGH 77
Query: 80 LELQSLWDKDIRDCMGV 96
++ + LW + G+
Sbjct: 78 IQARRLWKDYFPEVNGI 94
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like
6
Length = 190
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E VL LGLDN+GKTT + K N + N I T+G +I + +++ +D+
Sbjct: 21 EVHVLCLGLDNSGKTTIINKLK---PSNAQSQN---ILPTIGFSIEKFKSSSLSFTVFDM 74
Query: 77 GGQLELQSLWD 87
GQ ++LW+
Sbjct: 75 SGQGRYRNLWE 85
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
T+ SG + LRK F ++ LG + GKT+ + T+F Y + + T+G++
Sbjct: 2 TMSSGDFGNPLRK--FKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFL 52
Query: 63 Q----IDINTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
++ TVRL WD GQ +SL IRD V I N NS H
Sbjct: 53 SKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFH 103
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In
Complex With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDINTVRLNFWDLG 77
+L++GLD AGKTT L YK +TT T+G N+ ++ + WD+G
Sbjct: 5 ILMVGLDAAGKTTIL----------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVG 54
Query: 78 GQLELQSLWDKDIRDCMGV 96
G +++ LW ++ G+
Sbjct: 55 GLDKIRPLWRHYFQNTQGL 73
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 26/104 (25%)
Query: 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQID 65
SG Y Y+++ +L LG GKTT+L ++T N NP K TTVG++ +
Sbjct: 19 SGDYDYLIK-----LLALGDSGVGKTTFL----YRYTDN--KFNP-KFITTVGIDFREKR 66
Query: 66 I--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMG 95
+ V L WD GQ +SL RD MG
Sbjct: 67 VVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMG 110
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINT 68
LRK F ++ LG + GKT+ + T+F Y + + T+G++ ++ T
Sbjct: 4 LRK--FKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFLSKTMYLEDRT 54
Query: 69 VRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
+RL WD GQ +SL IRD V I N NS
Sbjct: 55 IRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNS 93
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 33.9 bits (76), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTT-VGLNIGQIDIN--TVRLNFWDL 76
+L++G GK+ L +F ++ NPS ITT + I +DIN V+L WD
Sbjct: 10 ILLIGDSGVGKSCLL----VRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 63
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +++ R MG+
Sbjct: 64 AGQERFRTITTAYYRGAMGI 83
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTT-VGLNIGQIDIN--TVRLNFWDL 76
+L++G GK+ L +F ++ NPS ITT + I +DIN V+L WD
Sbjct: 23 ILLIGDSGVGKSCLL----VRFVEDK--FNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 76
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +++ R MG+
Sbjct: 77 AGQERFRTITTAYYRGAMGI 96
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTT-VGLNIGQIDIN--TVRLNFWDL 76
+L++G GK+ L +F ++ NPS ITT + I +DIN V+L WD
Sbjct: 6 ILLIGDSGVGKSCLL----VRFVED--KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +++ R MG+
Sbjct: 60 AGQERFRTITTAYYRGAMGI 79
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 26/107 (24%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
++ G Y Y+++ +L LG GKTT+L ++T N NP K TTVG++
Sbjct: 2 SMTDGDYDYLIK-----LLALGDSGVGKTTFL----YRYTDN--KFNP-KFITTVGIDFR 49
Query: 63 QIDI--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMG 95
+ + V L WD G +SL RD MG
Sbjct: 50 EKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMG 96
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINTVRLN 72
+F ++ LG + GKT+ + T+F Y + + T+G++ ++ TVRL
Sbjct: 1 KFKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFLSKTMYLEDRTVRLQ 53
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +SL IRD V I N NS
Sbjct: 54 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNS 88
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 26/107 (24%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
++ G Y Y+++ +L LG GKTT+L ++T N NP K TTVG++
Sbjct: 2 SMTDGDYDYLIK-----LLALGDSGVGKTTFL----YRYTDNK--FNP-KFITTVGIDFR 49
Query: 63 QIDI--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMG 95
+ + V L WD G +SL RD MG
Sbjct: 50 EKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAMG 96
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 16/94 (17%)
Query: 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG---- 62
G Y Y+ F V+++G GK+ L ++FT+N + +T+G+
Sbjct: 15 GSYDYL-----FKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSI 62
Query: 63 QIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
Q+D T++ WD GQ +++ R +G
Sbjct: 63 QVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGA 96
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 20 VLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
++ LGLDNAGKTT L K + ++ ++P T+ L I + T +DLGG
Sbjct: 25 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTT-----FDLGG 75
Query: 79 QLELQSLW 86
++ + +W
Sbjct: 76 HIQARRVW 83
>pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex
pdb|1F6B|B Chain B, Crystal Structure Of Sar1-Gdp Complex
Length = 198
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 20 VLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
++ LGLDNAGKTT L K + ++ ++P T+ L I + T +DLGG
Sbjct: 28 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTT-----FDLGG 78
Query: 79 QLELQSLW 86
++ + +W
Sbjct: 79 HIQARRVW 86
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINTVRLN 72
+F ++ LG + GKT+ + T+F Y + + T+G++ ++ TVRL
Sbjct: 2 KFKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFLSKTMYLEDRTVRLQ 54
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +SL IRD V I N NS
Sbjct: 55 LWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNS 89
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 13/96 (13%)
Query: 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINTVRL 71
++ ++ LG GKT+ + F NY+ +T+G++ +D VRL
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQ--------STIGIDFLSKTLYLDEGPVRL 52
Query: 72 NFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +SL IRD V I N+ S
Sbjct: 53 QLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQS 88
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 32.3 bits (72), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 14 RKDE----FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QID 65
R DE F V+++G GK+ L ++FT+N + +T+G+ Q+D
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVD 74
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
T++ WD GQ +++ R +G
Sbjct: 75 GKTIKAQIWDTAGQERYRAITSAYYRGAVGA 105
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 32.0 bits (71), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
VL+LGLDNAGKT+ L + TVG+N+ + + WDLGGQ
Sbjct: 25 VLMLGLDNAGKTSILYRLHLG--------DVVTTVPTVGVNLETLQYKNISFEVWDLGGQ 76
Query: 80 LELQSLW--------------DKDIRDCMGV 96
++ W D RD MGV
Sbjct: 77 TGVRPYWRCYFSDTDAVIYVVDSTDRDRMGV 107
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 20 VLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
++ LGLDNAGKTT L K + ++ ++P T+ L I + T +DLGG
Sbjct: 19 LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTT-----FDLGG 69
Query: 79 QLELQSLW 86
++ + +W
Sbjct: 70 GIQARRVW 77
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTT-VGLNIGQIDIN--TVRLNFWDL 76
+L++G GK+ L +F ++ NPS ITT + I +DIN V+L WD
Sbjct: 6 ILLIGDSGVGKSCLL----VRFVED--KFNPSFITTIGIDFKIKTVDINGKKVKLQLWDT 59
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +++ R G+
Sbjct: 60 AGQERFRTITTAYYRGAXGI 79
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTT-VGLNIGQIDIN--TVRLNFWDL 76
+L++G GK+ L +F ++ NPS ITT + I +DIN V+L WD
Sbjct: 6 ILLIGDSGVGKSCLL----VRFVED--KFNPSFITTIGIDFKIKTVDINGKKVKLQIWDT 59
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +++ R G+
Sbjct: 60 AGQERFRTITTAYYRGAXGI 79
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F +L++G GKT L F + N + I+T +G++ ++D ++L
Sbjct: 9 FKLLLIGDSGVGKTCVL------FRFSEDAFNSTFIST-IGIDFKIRTIELDGKRIKLQI 61
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +++ R MG+ V I N+ S
Sbjct: 62 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 95
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 11/94 (11%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F +L++G GKT L F + N + I+T +G++ ++D ++L
Sbjct: 7 FKLLLIGDSGVGKTCVL------FRFSEDAFNSTFIST-IGIDFKIRTIELDGKRIKLQI 59
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +++ R MG+ V I N+ S
Sbjct: 60 WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKS 93
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 20 VLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+ILG GKT+ + + KF+ YK + T + +D V + WD G
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM----VDDRLVTMQIWDTAG 66
Query: 79 QLELQSL 85
Q QSL
Sbjct: 67 QERFQSL 73
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F V+++G GK+ L ++FT+N + +T+G+ Q+D T++
Sbjct: 6 FKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVDGKTIKAQI 58
Query: 74 WDLGGQLELQSLWDKDIRDCMGV 96
WD GQ + + R +G
Sbjct: 59 WDTAGQERYRRITSAYYRGAVGA 81
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 20 VLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+ILG GKT+ + + KF+ YK + T + +D V + WD G
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM----VDDRLVTMQIWDTAG 66
Query: 79 QLELQSL 85
Q QSL
Sbjct: 67 QERFQSL 73
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRL 71
L K ++ LGLDNAGKTT L K + ++ ++P T+ L I + T
Sbjct: 31 LYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHP----TSEELTIAGMTFTT--- 83
Query: 72 NFWDLGGQLELQSLW 86
+DLGG + + +W
Sbjct: 84 --FDLGGHEQARRVW 96
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 20 VLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+ILG GKT+ + + KF+ YK + T + +D V + WD G
Sbjct: 11 VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVM----VDDRLVTMQIWDTAG 66
Query: 79 QLELQSL 85
Q QSL
Sbjct: 67 QERFQSL 73
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINT 68
LRK F ++ LG + GKT+ + T+F Y + + T+G++ ++ T
Sbjct: 11 LRK--FKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFLSKTMYLEDRT 61
Query: 69 VRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
+RL WD G +SL IRD V I N NS
Sbjct: 62 IRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNS 100
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 14/94 (14%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN-----TVRLNF 73
+++LG +GKT+ A+ F K YK T+GL+ I V L
Sbjct: 9 IVVLGDGASGKTSLTTCFAQETFGKQYK--------QTIGLDFFLRRITLPGNLNVTLQI 60
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD+GGQ + DK I GV V I N S
Sbjct: 61 WDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQS 94
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI----NTVRLN 72
F +LI+G + GKT++L A FT + +TVG++ I ++L
Sbjct: 6 FKILIIGNSSVGKTSFLFRYADDSFTPAF--------VSTVGIDFKVKTIYRNDKRIKLQ 57
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLI 111
WD GQ +++ R MG + I N+ S + +
Sbjct: 58 IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV 96
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space
Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1)
Space Group
Length = 168
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 13/71 (18%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFW 74
++++G GK++ ++ K FTK+YK T+G++ QI +N VRL W
Sbjct: 8 MVVVGNGAVGKSSMIQRYCKGIFTKDYK--------KTIGVDFLERQIQVNDEDVRLMLW 59
Query: 75 DLGGQLELQSL 85
D GQ E ++
Sbjct: 60 DTAGQEEFDAI 70
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINT 68
LRK F ++ LG + GKT+ + T+F Y + + T+G++ ++ T
Sbjct: 4 LRK--FKLVFLGEQSVGKTSLI----TRFM--YDSFDNT-YQATIGIDFLSKTMYLEDRT 54
Query: 69 VRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
VRL WD G +SL IRD V I N NS
Sbjct: 55 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS 93
>pdb|1RI8|A Chain A, Crystal Structure Of The Camelid Single Domain Antibody
1d2l19 In Complex With Hen Egg White Lysozyme
Length = 134
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 17/93 (18%)
Query: 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFT--------KNYKGMNPSKITTTVG 58
G+++ K+ V ++ D++G+T Y +S K +FT Y MN K T
Sbjct: 35 GWFRRAPGKEREGVAVI--DSSGRTAYADSVKGRFTISRDVALDTAYLQMNSLKPEDTAM 92
Query: 59 L-------NIGQIDINTVRLNFWDLGGQLELQS 84
++G N R N+W G Q+ + S
Sbjct: 93 YYCAAGWSSLGSCGTNRNRYNYWGQGTQVTVSS 125
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 26/107 (24%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
+ G Y Y+++ +L LG GKTT+L ++T N NP K TTVG++
Sbjct: 2 SXTDGDYDYLIK-----LLALGDSGVGKTTFL----YRYTDN--KFNP-KFITTVGIDFR 49
Query: 63 QIDI--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMG 95
+ + V L WD G +SL RD G
Sbjct: 50 EKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXG 96
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 18/110 (16%)
Query: 7 GFYKYMLRKDEFCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQID 65
G + YM F +LI+G + GKT++L A FT + +TVG++
Sbjct: 18 GNFDYM-----FKLLIIGNSSVGKTSFLFRYADDTFTPAF--------VSTVGIDFKVKT 64
Query: 66 I----NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLI 111
+ V+L WD GQ +++ R MG + I N+ S + +
Sbjct: 65 VYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAV 114
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI--NTVRLNFWDLG 77
V+I+G GKT+ +E +FT + K T V I +++ +RL WD
Sbjct: 29 VIIIGSRGVGKTSLME----RFTDDT-FCEACKSTVGVDFKIKTVELRGKKIRLQIWDTA 83
Query: 78 GQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ S+ R G+ V I K +
Sbjct: 84 GQERFNSITSAYYRSAKGIILVYDITKKET 113
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 43/107 (40%), Gaps = 26/107 (24%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
+ G Y Y+++ +L LG GKTT+L ++T N NP K TTVG++
Sbjct: 2 SXTDGDYDYLIK-----LLALGDSGVGKTTFL----YRYTDN--KFNP-KFITTVGIDFR 49
Query: 63 QIDI--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMG 95
+ + V L WD G +SL RD G
Sbjct: 50 EKRVVYDTQGADGASGKAFKVHLQLWDTAGLERFRSLTTAFFRDAXG 96
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 29.3 bits (64), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ----IDINT 68
LRK F ++ LG + GKT+ + T+F Y + + T+G++ ++ T
Sbjct: 14 LRK--FKLVFLGEQSVGKTSLI----TRFM--YDSFD-NTYQATIGIDFLSKTMYLEDRT 64
Query: 69 VRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
VRL WD G +SL IRD V I N NS
Sbjct: 65 VRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNS 103
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 26 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 81
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 82 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 112
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKT-TYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 96
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 65
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 66 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 96
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp
Analogue
Length = 201
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLN--IGQIDIN--TVRLNF 73
F ++++G GKT + +FT+ G+ P T+G++ I ++IN V+L
Sbjct: 27 FKIVLIGNAGVGKTCLVR----RFTQ---GLFPPGQGATIGVDFMIKTVEINGEKVKLQI 79
Query: 74 WDLGGQLELQSL 85
WD GQ +S+
Sbjct: 80 WDTAGQERFRSI 91
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 64
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 65 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 95
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 13/84 (15%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLN--IGQIDIN--TVRLN 72
F +LI+G GK++ L A F+ +Y TT+G++ I ++IN V+L
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSY--------ITTIGVDFKIRTVEINGEKVKLQ 61
Query: 73 FWDLGGQLELQSLWDKDIRDCMGV 96
WD GQ +++ R GV
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGV 85
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLN 72
F +L++G GK+ L A +T++Y +T+G++ ++D T++L
Sbjct: 17 FKLLLIGDSGVGKSCLLLRFADDTYTESY--------ISTIGVDFKIRTIELDGKTIKLQ 68
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +++ R G+ V + ++ S
Sbjct: 69 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 103
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 93
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 14 RKDEFCVLILGLDNAGKTT-YLESAKTKFTKNYKGMNPSKITT------TVGLNIGQIDI 66
R F V++LG GKT+ L + KF N ITT T LNIG +
Sbjct: 17 RAYSFKVVLLGEGCVGKTSLVLRYCENKF-------NDKHITTLQASFLTKKLNIGGKRV 69
Query: 67 NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
N L WD GQ +L RD G V I +++S
Sbjct: 70 N---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 107
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 28.9 bits (63), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 14 RKDE----FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QID 65
R DE F V+++G GK+ L ++FT+N + +T+G+ Q+D
Sbjct: 22 RDDEYDYLFKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVD 74
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
T++ WD G +++ R +G
Sbjct: 75 GKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T++Y S I + ++D T++L WD
Sbjct: 7 FKLLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 62
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 63 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 93
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNFWD 75
+LI+G GK++ L +FT + +P ++ T+G++ +D N +L WD
Sbjct: 18 ILIIGESGVGKSSLL----LRFTDDT--FDP-ELAATIGVDFKVKTISVDGNKAKLAIWD 70
Query: 76 LGGQLELQSLWDKDIRDCMGV 96
GQ ++L R GV
Sbjct: 71 TAGQERFRTLTPSYYRGAQGV 91
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 14 RKDEFCVLILGLDNAGKTT-YLESAKTKFTKNYKGMNPSKITT------TVGLNIGQIDI 66
R F V++LG GKT+ L + KF N ITT T LNIG +
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKF-------NDKHITTLGASFLTKKLNIGGKRV 55
Query: 67 NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
N L WD GQ +L RD G V I +++S
Sbjct: 56 N---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +I+G GK+ L +FT K ++ ++ I G + ID ++L WD
Sbjct: 22 FKYIIIGDTGVGKSCLL----LQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 77
Query: 77 GGQLELQSLWDKDIRDCMGV 96
GQ +S+ R G
Sbjct: 78 AGQESFRSITRSYYRGAAGA 97
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 14 RKDEFCVLILGLDNAGKTT-YLESAKTKFTKNYKGMNPSKITT------TVGLNIGQIDI 66
R F V++LG GKT+ L + KF N ITT T LNIG +
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKF-------NDKHITTLQASFLTKKLNIGGKRV 55
Query: 67 NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
N L WD GQ +L RD G V I +++S
Sbjct: 56 N---LAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDS 93
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI----NTVRLN 72
F +L++G + GKT++L A FT + +TVG++ + ++L
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAF--------VSTVGIDFKVKTVYRHDKRIKLQ 74
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +++ R MG + I N+ S
Sbjct: 75 IWDTAGQERYRTITTAYYRGAMGFLLMYDIANQES 109
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+I G N GK+T L++ T K S TT G+N+GQ + R D G
Sbjct: 169 TVVIAGHPNVGKSTLLKALTTA-----KPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223
Query: 79 QLE 81
L+
Sbjct: 224 LLD 226
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 14 RKDE----FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QID 65
R DE F V+++G GK+ L ++FT+N + +T+G+ Q+D
Sbjct: 4 RDDEYDYLFKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVD 56
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGV 96
T++ WD G +++ R +G
Sbjct: 57 GKTIKAQIWDTAGLERYRAITSAYYRGAVGA 87
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLN 72
F +L++G GK+ L A +T++Y +T+G++ ++D T++L
Sbjct: 34 FKLLLIGDSGVGKSCLLLRFADDTYTESY--------ISTIGVDFKIRTIELDGKTIKLQ 85
Query: 73 FWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +++ R G+ V + ++ S
Sbjct: 86 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQES 120
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +I+G GK+ L +FT K ++ ++ I G + ID ++L WD
Sbjct: 11 FKYIIIGDTGVGKSCLL----LQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 66
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +S+ R G V I +++
Sbjct: 67 AGQESFRSITRSYYRGAAGALLVYDITRRDT 97
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3
Rab- Binding Domain
Length = 167
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F V+++G GK+ L ++FT+N + +T+G+ Q+D T++
Sbjct: 6 FKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVDGKTIKAQI 58
Query: 74 WDLGGQLELQSLWDKDIRDCMGV 96
WD G +++ R +G
Sbjct: 59 WDTAGLERYRAITSAYYRGAVGA 81
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With
Fip3
Length = 172
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F V+++G GK+ L ++FT+N + +T+G+ Q+D T++
Sbjct: 9 FKVVLIGDSGVGKSNLL----SRFTRNEFNLESK---STIGVEFATRSIQVDGKTIKAQI 61
Query: 74 WDLGGQLELQSLWDKDIRDCMGV 96
WD G +++ R +G
Sbjct: 62 WDTAGLERYRAITSAYYRGAVGA 84
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKN-YKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F L++G GK+ L +F +N +K + I G + + TV+L WD
Sbjct: 26 FKFLVIGSAGTGKSCLLH----QFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDT 81
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +S+ R G V I ++ +
Sbjct: 82 AGQERFRSVTRSYYRGAAGALLVYDITSRET 112
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK L A +T++Y S I + ++D T++L WD
Sbjct: 17 FKLLLIGDSGVGKNCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDT 72
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 73 AGQERFRTITSSYYRGAHGIIVVYDVTDQES 103
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QIDINTVRLNF 73
F ++++G GK+ L ++FTKN M+ +T+G+ +I+ ++
Sbjct: 14 FKIVLIGDSGVGKSNLL----SRFTKNEFNMDSK---STIGVEFATRTLEIEGKRIKAQI 66
Query: 74 WDLGGQLELQSLWDKDIRDCMGV 96
WD GQ +++ R +G
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGA 89
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 26/119 (21%)
Query: 3 TLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG 62
++ G Y Y+++ L LG GKT+ L ++T G SK TTVG++
Sbjct: 2 SMSDGDYDYLIK-----FLALGDSGVGKTSVL----YQYTD---GKFNSKFITTVGIDFR 49
Query: 63 QIDI--------------NTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
+ + + L WD G +SL RD MG + + N+ S
Sbjct: 50 EKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQS 108
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L + +T +Y S I + ++D TV+L WD
Sbjct: 22 FKLLLIGNSGVGKSCLLLRFSDDTYTNDY----ISTIGVDFKIKTVELDGKTVKLQIWDT 77
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 78 AGQERFRTITSSYYRGSHGIIIVYDVTDQES 108
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +I+G GK+ L +FT K + P I G I ++ ++L WD
Sbjct: 16 FKYIIIGDMGVGKSCLLH----QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 71
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G V I +++
Sbjct: 72 AGQERFRAVTRSYYRGAAGALMVYDITRRST 102
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +I+G GK+ L +FT K + P I G I ++ ++L WD
Sbjct: 31 FKYIIIGDMGVGKSCLLH----QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 86
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G V I +++
Sbjct: 87 AGQGRFRAVTRSYYRGAAGALMVYDITRRST 117
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQID-INTVRLNFWDLGG 78
+L++G +GK+ S ++ NY + ++ T+ + + + + LN WD GG
Sbjct: 9 LLLMGRSGSGKS----SMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGG 64
Query: 79 Q 79
Q
Sbjct: 65 Q 65
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 20 VLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
+L++G GK+ L A +T++Y S I + ++D T++L WD G
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDTAG 56
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNS 107
Q +++ R G+ V + ++ S
Sbjct: 57 QERFRTITSSYYRGAHGIIVVYDVTDQES 85
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 14 RKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDI-----N 67
R+ + + ++G GKTTY+ +F KNY TVG + N
Sbjct: 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNY--------NATVGAVNHPVTFLDDQGN 59
Query: 68 TVRLNFWDLGGQLELQSLWD 87
++ N WD GQ + L D
Sbjct: 60 VIKFNVWDTAGQEKKAVLKD 79
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLN----IGQIDINTVRLNF 73
F V+++G GKT L +F +TVG++ + +D V+L
Sbjct: 11 FKVMLVGDSGVGKTCLL----VRFKDG--AFLAGTFISTVGIDFRNKVLDVDGVKVKLQM 64
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
WD GQ +S+ RD + + + NK S
Sbjct: 65 WDTAGQERFRSVTHAYYRDAHALLLLYDVTNKAS 98
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 20 VLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
+L++G GK+ L A +T++Y S I + ++D T++L WD G
Sbjct: 2 LLLIGDSGVGKSCLLLRFADDTYTESY----ISTIGVDFKIRTIELDGKTIKLQIWDTAG 57
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNS 107
Q +++ R G+ V + ++ S
Sbjct: 58 QERFRTITSSYYRGAHGIIVVYDVTDQES 86
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L A +T +Y S I + ++ TV+L WD
Sbjct: 10 FKLLLIGDSGVGKSCLLLRFADDTYTDSY----ISTIGVDFKIRTISLENKTVKLQIWDT 65
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + +++S
Sbjct: 66 AGQERFRTITSSYYRGAHGIIIVYDVTDRDS 96
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L + +T +Y S I + ++D TV+L WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDY----ISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYL-ESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +L++G GK+ L + +T +Y S I + ++D TV+L WD
Sbjct: 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDY----ISTIGVDFKIKTVELDGKTVKLQIWDT 64
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +++ R G+ V + ++ S
Sbjct: 65 AGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 61
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 62 DTAGQERYHSLAPXYYRGAQAAIVVYDITNEES 94
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|3K81|A Chain A, Structure Of The Central Interaction Protein From The
Trypanosoma Brucei Editosome In Complex With Single
Domain Antibodies
pdb|3K81|B Chain B, Structure Of The Central Interaction Protein From The
Trypanosoma Brucei Editosome In Complex With Single
Domain Antibodies
Length = 127
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 15/90 (16%)
Query: 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFT------KN--YKGMNPSKITTTV- 57
G+Y+ K LI ++N G+T Y++S K +FT KN Y MN K T
Sbjct: 35 GWYRRAPGKQR--ELIAAINNEGRTNYVDSVKGRFTVSRDNAKNVMYLQMNSLKPEDTAV 92
Query: 58 ---GLNIGQIDINTVRLNFWDLGGQLELQS 84
N+ ++ RL +W G Q+ + S
Sbjct: 93 YYCNANLQTGTLSGARL-YWGQGTQVTVSS 121
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
+Y Y+ F ++++G GK+ L ++FT++ + SK T V I +
Sbjct: 3 YYDYL-----FKIVLIGDSGVGKSNLL----SRFTRDEFNL-ESKSTIGVEFATKSIQLK 52
Query: 68 T---VRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
++ WD GQ +++ R +G V I KNS
Sbjct: 53 NNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNS 95
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCL-----DDTTVKFEIW 59
Query: 75 DLGGQLELQSL 85
D GQ SL
Sbjct: 60 DTAGQERYHSL 70
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|1KXV|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|D Chain D, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 121
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 21 LILGLDNAGKTTYLESAKTKFT 42
+ G+DN G TTY++S +FT
Sbjct: 47 FVSGIDNDGTTTYVDSVAGRFT 68
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 7 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 61
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 62 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 94
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-----DDTTVKFEIW 57
Query: 75 DLGGQLELQSL 85
D GQ SL
Sbjct: 58 DTAGQERYHSL 68
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLG 77
F ++++G + GKT ++ KT +G S I + +I V+L WD
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQG---STIGVDFTMKTLEIQGKRVKLQIWDTA 86
Query: 78 GQLELQSLWDKDIRDCMGV 96
GQ +++ R G
Sbjct: 87 GQERFRTITQSYYRSANGA 105
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLG 77
F L++G GK+ L K +K + I G I + V+L WD
Sbjct: 11 FKFLVIGNAGTGKSCLLHQF---IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 67
Query: 78 GQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +S+ R G V I ++ +
Sbjct: 68 GQERFRSVTRSYYRGAAGALLVYDITSRET 97
>pdb|1LKI|A Chain A, The Crystal Structure And Biological Function Of Leukemia
Inhibitory Factor: Implications For Receptor Binding
Length = 180
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 32 TYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI 66
YL ++ T T++ K +NP+ ++ V LN ID+
Sbjct: 88 AYLSASLTNITRDQKVLNPTAVSLQVKLN-ATIDV 121
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 7/93 (7%)
Query: 17 EFCVLILGLDNAGKTT-YLESAKTKFTKNYKG-MNPSKITTTVGLNIGQIDINTVRLNFW 74
+F +++LG GK++ L K +F + + + + +T TV L D TV+ W
Sbjct: 6 QFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-----DDTTVKFEIW 60
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D GQ SL R V I N+ S
Sbjct: 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEES 93
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLG 77
F L++G GK+ L K +K + I G I + V+L WD
Sbjct: 12 FKFLVIGNAGTGKSCLLHQF---IEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTA 68
Query: 78 GQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +S+ R G V I ++ +
Sbjct: 69 GQERFRSVTRSYYRGAAGALLVYDITSRET 98
>pdb|3CNH|A Chain A, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
pdb|3CNH|B Chain B, Crystal Structure Of Predicted Hydrolase Of Haloacid
Dehalogenase-Like Superfamily (Np_295428.1) From
Deinococcus Radiodurans At 1.66 A Resolution
Length = 200
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVR 97
T++ FWD+GG L L + WD++ R + R
Sbjct: 3 TIKALFWDIGGVL-LTNGWDREQRADVAQR 31
>pdb|3NTT|A Chain A, Structural Insights Of Adeno-Associated Virus 5. A Gene
Therapy Vector For Cystic Fibrosis
Length = 724
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
D++ + +N G + ++ ++ YK P + T G N+G +N ++ +
Sbjct: 432 DQYLYRFVSTNNTGGVQFNKNLAGRYANTYKNWFPGPMGRTQGWNLGS-GVNRASVSAFA 490
Query: 76 LGGQLELQ 83
++EL+
Sbjct: 491 TTNRMELE 498
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 17/67 (25%)
Query: 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
C+LI N T Y+ + F+ N +D NTV L WD G
Sbjct: 21 CMLISYTSNTFPTDYVPTVFDNFSANV-----------------VVDGNTVNLGLWDTAG 63
Query: 79 QLELQSL 85
Q + L
Sbjct: 64 QEDYNRL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,548,549
Number of Sequences: 62578
Number of extensions: 131822
Number of successful extensions: 516
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 60
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 145
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)