Query psy9521
Match_columns 125
No_of_seqs 141 out of 1318
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 21:46:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0071|consensus 99.9 9.2E-26 2E-30 142.8 8.6 114 1-125 1-162 (180)
2 KOG0094|consensus 99.9 1.5E-25 3.2E-30 148.7 9.8 103 14-125 19-138 (221)
3 KOG0070|consensus 99.9 5.8E-26 1.3E-30 149.4 7.8 113 1-125 1-162 (181)
4 KOG0084|consensus 99.9 8.3E-25 1.8E-29 145.2 6.9 81 18-106 10-107 (205)
5 KOG0076|consensus 99.9 2.3E-24 4.9E-29 140.6 4.6 123 1-125 1-171 (197)
6 KOG0092|consensus 99.9 1.8E-22 3.9E-27 133.7 9.4 84 15-106 3-103 (200)
7 PF00025 Arf: ADP-ribosylation 99.9 1.7E-21 3.7E-26 130.0 13.0 110 5-125 1-160 (175)
8 KOG0087|consensus 99.9 1.3E-22 2.9E-27 136.0 7.2 101 9-124 11-128 (222)
9 KOG0080|consensus 99.9 2.1E-22 4.5E-27 130.3 7.2 82 17-106 11-109 (209)
10 KOG0086|consensus 99.9 2.9E-22 6.2E-27 128.8 7.6 105 5-124 2-123 (214)
11 KOG0078|consensus 99.9 5E-22 1.1E-26 133.3 8.3 97 16-122 11-124 (207)
12 KOG0079|consensus 99.9 2.5E-22 5.4E-27 128.4 5.2 85 9-106 5-106 (198)
13 PLN00223 ADP-ribosylation fact 99.9 2.1E-21 4.5E-26 130.2 9.7 97 1-106 1-110 (181)
14 KOG0098|consensus 99.9 1.4E-21 3E-26 129.0 8.3 98 16-123 5-119 (216)
15 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 4E-21 8.8E-26 129.0 9.5 98 14-122 2-116 (182)
16 PTZ00133 ADP-ribosylation fact 99.9 4.2E-21 9E-26 128.8 9.4 97 1-106 1-110 (182)
17 KOG0073|consensus 99.9 7.7E-21 1.7E-25 123.1 9.9 110 5-125 3-162 (185)
18 cd04133 Rop_like Rop subfamily 99.8 1.3E-20 2.8E-25 125.9 9.8 94 18-122 2-112 (176)
19 cd01875 RhoG RhoG subfamily. 99.8 1.1E-20 2.4E-25 127.5 9.2 96 17-123 3-115 (191)
20 KOG0095|consensus 99.8 4E-21 8.6E-26 123.2 6.4 94 18-121 8-118 (213)
21 cd04131 Rnd Rnd subfamily. Th 99.8 2.6E-20 5.7E-25 124.6 9.8 95 17-122 1-112 (178)
22 cd04120 Rab12 Rab12 subfamily. 99.8 1.8E-20 3.8E-25 127.8 8.8 80 19-106 2-98 (202)
23 KOG0394|consensus 99.8 9.6E-21 2.1E-25 124.8 6.4 86 13-106 5-107 (210)
24 cd04121 Rab40 Rab40 subfamily. 99.8 4.6E-20 1E-24 124.5 9.1 83 16-106 5-104 (189)
25 cd01874 Cdc42 Cdc42 subfamily. 99.8 8E-20 1.7E-24 121.8 9.7 81 18-106 2-99 (175)
26 KOG0091|consensus 99.8 1.2E-20 2.7E-25 122.4 5.0 82 17-106 8-107 (213)
27 cd04149 Arf6 Arf6 subfamily. 99.8 8.9E-20 1.9E-24 120.8 9.3 86 12-106 4-102 (168)
28 cd04102 RabL3 RabL3 (Rab-like3 99.8 6.4E-20 1.4E-24 125.0 8.4 81 18-106 1-103 (202)
29 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.8 1E-19 2.2E-24 126.4 9.1 83 16-106 12-111 (232)
30 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 1.5E-19 3.3E-24 120.1 9.3 82 17-106 2-99 (172)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 1.1E-19 2.3E-24 125.5 8.8 96 17-123 1-113 (222)
32 cd04128 Spg1 Spg1p. Spg1p (se 99.8 1.4E-19 3.1E-24 121.4 9.0 81 18-106 1-98 (182)
33 PLN03071 GTP-binding nuclear p 99.8 2E-19 4.3E-24 123.9 9.1 84 15-106 11-111 (219)
34 cd04122 Rab14 Rab14 subfamily. 99.8 3E-19 6.6E-24 117.6 9.0 82 17-106 2-100 (166)
35 smart00177 ARF ARF-like small 99.8 3E-19 6.6E-24 118.9 8.9 89 9-106 5-106 (175)
36 PTZ00369 Ras-like protein; Pro 99.8 5.1E-19 1.1E-23 119.1 9.5 84 15-106 3-102 (189)
37 cd04117 Rab15 Rab15 subfamily. 99.8 6.2E-19 1.3E-23 115.8 8.9 95 18-122 1-112 (161)
38 KOG0393|consensus 99.8 8.6E-20 1.9E-24 122.7 4.8 97 16-121 3-117 (198)
39 cd04136 Rap_like Rap-like subf 99.8 7.1E-19 1.5E-23 115.0 8.9 82 17-106 1-98 (163)
40 cd04175 Rap1 Rap1 subgroup. T 99.8 7.6E-19 1.7E-23 115.3 9.0 82 17-106 1-98 (164)
41 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 7.2E-19 1.6E-23 119.4 9.0 81 18-106 1-99 (201)
42 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 8E-19 1.7E-23 116.4 8.8 80 19-106 2-98 (170)
43 PF00071 Ras: Ras family; Int 99.8 9.1E-19 2E-23 114.5 8.7 94 19-122 1-111 (162)
44 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1.2E-18 2.6E-23 113.4 8.9 82 17-106 1-98 (162)
45 PLN00023 GTP-binding protein; 99.8 1E-18 2.2E-23 125.7 9.1 85 14-106 18-132 (334)
46 cd04176 Rap2 Rap2 subgroup. T 99.8 1.5E-18 3.3E-23 113.6 9.2 82 17-106 1-98 (163)
47 cd04154 Arl2 Arl2 subfamily. 99.8 2.2E-18 4.7E-23 114.3 9.9 86 13-106 10-107 (173)
48 cd04119 RJL RJL (RabJ-Like) su 99.8 1.2E-18 2.6E-23 114.0 8.5 97 18-123 1-118 (168)
49 cd01871 Rac1_like Rac1-like su 99.8 1.8E-18 3.8E-23 115.2 9.4 94 18-122 2-112 (174)
50 cd01865 Rab3 Rab3 subfamily. 99.8 1.5E-18 3.2E-23 114.3 8.8 81 18-106 2-99 (165)
51 cd04127 Rab27A Rab27a subfamil 99.8 1.4E-18 3.1E-23 115.5 8.8 83 16-106 3-112 (180)
52 KOG0093|consensus 99.8 1.2E-18 2.5E-23 111.5 7.6 96 19-124 23-135 (193)
53 smart00178 SAR Sar1p-like memb 99.8 3.9E-18 8.6E-23 114.4 10.3 93 4-104 3-108 (184)
54 KOG0075|consensus 99.8 4.3E-19 9.2E-24 113.4 5.2 106 9-125 12-166 (186)
55 cd00877 Ran Ran (Ras-related n 99.8 2E-18 4.4E-23 114.0 8.6 81 18-106 1-98 (166)
56 KOG0081|consensus 99.8 2.4E-20 5.3E-25 120.6 -0.6 90 9-111 6-121 (219)
57 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.3E-18 7.1E-23 113.8 9.6 94 4-106 2-108 (174)
58 cd04103 Centaurin_gamma Centau 99.8 2.7E-18 5.8E-23 112.8 9.0 81 18-106 1-91 (158)
59 cd04150 Arf1_5_like Arf1-Arf5- 99.8 1.6E-18 3.5E-23 113.7 7.6 80 18-106 1-93 (159)
60 cd04134 Rho3 Rho3 subfamily. 99.8 3.5E-18 7.7E-23 115.1 9.4 93 19-122 2-111 (189)
61 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.8E-18 6.1E-23 113.2 8.6 79 20-106 2-93 (164)
62 cd04110 Rab35 Rab35 subfamily. 99.8 4E-18 8.7E-23 115.7 9.5 83 16-106 5-104 (199)
63 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 5E-18 1.1E-22 111.6 9.0 82 17-106 2-100 (166)
64 cd04115 Rab33B_Rab33A Rab33B/R 99.8 6.7E-18 1.5E-22 111.7 9.3 82 17-106 2-101 (170)
65 cd04111 Rab39 Rab39 subfamily. 99.8 5.7E-18 1.2E-22 116.1 9.2 82 17-106 2-101 (211)
66 cd01867 Rab8_Rab10_Rab13_like 99.8 5.4E-18 1.2E-22 111.7 8.7 82 17-106 3-101 (167)
67 cd04106 Rab23_lke Rab23-like s 99.8 3.4E-18 7.5E-23 111.7 7.7 81 18-106 1-100 (162)
68 cd01864 Rab19 Rab19 subfamily. 99.8 6.1E-18 1.3E-22 111.2 8.8 83 16-106 2-101 (165)
69 cd04124 RabL2 RabL2 subfamily. 99.8 6.3E-18 1.4E-22 111.0 8.9 81 18-106 1-98 (161)
70 cd04126 Rab20 Rab20 subfamily. 99.8 5.3E-18 1.1E-22 117.0 8.8 95 18-123 1-108 (220)
71 cd04116 Rab9 Rab9 subfamily. 99.8 8.3E-18 1.8E-22 110.9 9.3 84 15-106 3-103 (170)
72 KOG0088|consensus 99.8 1.2E-18 2.7E-23 112.7 4.8 97 16-122 12-125 (218)
73 cd04158 ARD1 ARD1 subfamily. 99.8 8.1E-18 1.7E-22 111.3 8.9 79 19-106 1-92 (169)
74 cd04161 Arl2l1_Arl13_like Arl2 99.8 6.9E-18 1.5E-22 111.6 8.5 80 19-106 1-92 (167)
75 PLN03110 Rab GTPase; Provision 99.7 1.2E-17 2.5E-22 114.9 9.6 83 16-106 11-110 (216)
76 cd04132 Rho4_like Rho4-like su 99.7 7.9E-18 1.7E-22 112.7 8.5 81 18-106 1-99 (187)
77 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.3E-17 2.8E-22 109.1 9.3 83 16-106 1-99 (164)
78 cd01868 Rab11_like Rab11-like. 99.7 1.1E-17 2.4E-22 109.7 8.8 96 17-122 3-115 (165)
79 cd04140 ARHI_like ARHI subfami 99.7 1.4E-17 3.1E-22 109.5 9.1 82 17-106 1-98 (165)
80 cd04118 Rab24 Rab24 subfamily. 99.7 1.6E-17 3.5E-22 111.8 9.4 81 18-106 1-99 (193)
81 cd04109 Rab28 Rab28 subfamily. 99.7 1.1E-17 2.5E-22 114.7 8.7 81 18-106 1-99 (215)
82 cd04125 RabA_like RabA-like su 99.7 1.4E-17 3E-22 111.8 8.9 81 18-106 1-98 (188)
83 cd04113 Rab4 Rab4 subfamily. 99.7 1.5E-17 3.2E-22 108.8 8.6 94 18-121 1-111 (161)
84 smart00173 RAS Ras subfamily o 99.7 1.4E-17 3E-22 109.1 8.4 81 18-106 1-97 (164)
85 cd04160 Arfrp1 Arfrp1 subfamil 99.7 2.9E-17 6.3E-22 107.9 9.8 86 19-105 1-98 (167)
86 KOG0074|consensus 99.7 4.6E-17 1E-21 103.6 9.7 103 15-125 15-163 (185)
87 cd01892 Miro2 Miro2 subfamily. 99.7 5.3E-17 1.2E-21 107.5 10.4 84 15-106 2-103 (169)
88 cd04144 Ras2 Ras2 subfamily. 99.7 1.4E-17 3E-22 112.2 7.7 80 19-106 1-96 (190)
89 cd01866 Rab2 Rab2 subfamily. 99.7 2.7E-17 5.9E-22 108.6 8.9 81 18-106 5-102 (168)
90 smart00174 RHO Rho (Ras homolo 99.7 2.8E-17 6E-22 108.7 8.8 92 20-122 1-109 (174)
91 cd04130 Wrch_1 Wrch-1 subfamil 99.7 3.8E-17 8.3E-22 108.3 9.5 81 18-106 1-98 (173)
92 KOG0097|consensus 99.7 1.9E-17 4.1E-22 105.6 7.3 95 18-122 12-123 (215)
93 cd04177 RSR1 RSR1 subgroup. R 99.7 4.1E-17 8.9E-22 107.7 9.2 82 17-106 1-98 (168)
94 cd04112 Rab26 Rab26 subfamily. 99.7 2.7E-17 5.9E-22 110.9 8.4 94 18-121 1-112 (191)
95 cd00879 Sar1 Sar1 subfamily. 99.7 5.3E-17 1.1E-21 109.0 9.7 96 3-106 4-112 (190)
96 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.8E-17 6.1E-22 107.6 7.7 81 18-106 1-101 (164)
97 smart00176 RAN Ran (Ras-relate 99.7 2.8E-17 6E-22 111.9 7.6 76 23-106 1-93 (200)
98 cd01861 Rab6 Rab6 subfamily. 99.7 5.7E-17 1.2E-21 105.8 8.6 95 18-122 1-112 (161)
99 cd01870 RhoA_like RhoA-like su 99.7 7.1E-17 1.5E-21 106.8 9.0 94 18-122 2-112 (175)
100 cd04143 Rhes_like Rhes_like su 99.7 4E-17 8.6E-22 114.4 8.1 81 18-106 1-97 (247)
101 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 5.2E-17 1.1E-21 108.9 8.3 82 16-106 2-101 (183)
102 cd04155 Arl3 Arl3 subfamily. 99.7 1.6E-16 3.4E-21 105.0 10.4 81 15-103 12-104 (173)
103 cd04157 Arl6 Arl6 subfamily. 99.7 6.4E-17 1.4E-21 105.6 8.1 80 19-106 1-94 (162)
104 cd01860 Rab5_related Rab5-rela 99.7 1.2E-16 2.6E-21 104.5 8.9 82 17-106 1-99 (163)
105 PLN03108 Rab family protein; P 99.7 1E-16 2.3E-21 109.7 9.0 83 16-106 5-104 (210)
106 smart00175 RAB Rab subfamily o 99.7 1.6E-16 3.5E-21 103.8 8.5 95 18-122 1-112 (164)
107 cd04135 Tc10 TC10 subfamily. 99.7 2.9E-16 6.3E-21 103.8 9.5 81 18-106 1-98 (174)
108 PTZ00132 GTP-binding nuclear p 99.7 1.7E-16 3.7E-21 108.7 8.4 84 15-106 7-107 (215)
109 KOG0083|consensus 99.7 1.5E-18 3.2E-23 109.6 -2.0 79 21-106 1-96 (192)
110 KOG0072|consensus 99.7 1.9E-17 4.2E-22 105.5 3.0 114 1-125 1-163 (182)
111 cd00878 Arf_Arl Arf (ADP-ribos 99.7 3.3E-16 7.2E-21 102.1 8.2 80 19-106 1-92 (158)
112 PLN03118 Rab family protein; P 99.7 5.4E-16 1.2E-20 106.1 9.6 84 15-106 12-112 (211)
113 cd04151 Arl1 Arl1 subfamily. 99.7 2.6E-16 5.7E-21 102.8 7.5 77 19-104 1-90 (158)
114 cd01862 Rab7 Rab7 subfamily. 99.7 4.8E-16 1E-20 102.3 8.7 81 18-106 1-98 (172)
115 cd01863 Rab18 Rab18 subfamily. 99.7 6E-16 1.3E-20 101.0 9.0 81 18-106 1-98 (161)
116 cd04142 RRP22 RRP22 subfamily. 99.7 4.8E-16 1.1E-20 105.6 8.8 81 18-106 1-106 (198)
117 cd01873 RhoBTB RhoBTB subfamil 99.7 8E-16 1.7E-20 104.4 9.5 82 17-106 2-114 (195)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.7 5.1E-16 1.1E-20 101.3 7.7 79 19-106 1-93 (160)
119 cd04146 RERG_RasL11_like RERG/ 99.7 5.6E-16 1.2E-20 101.8 7.9 80 19-106 1-97 (165)
120 KOG0395|consensus 99.7 3E-16 6.6E-21 106.5 6.6 100 16-124 2-117 (196)
121 cd04114 Rab30 Rab30 subfamily. 99.6 1.5E-15 3.3E-20 99.8 9.5 84 15-106 5-105 (169)
122 cd01893 Miro1 Miro1 subfamily. 99.6 9.9E-16 2.1E-20 100.9 8.4 81 18-106 1-97 (166)
123 cd04123 Rab21 Rab21 subfamily. 99.6 1.7E-15 3.7E-20 98.5 8.8 81 18-106 1-98 (162)
124 cd04159 Arl10_like Arl10-like 99.6 1.2E-15 2.6E-20 98.6 7.7 78 20-105 2-92 (159)
125 cd04139 RalA_RalB RalA/RalB su 99.6 1.7E-15 3.7E-20 98.8 8.2 81 18-106 1-97 (164)
126 COG1100 GTPase SAR1 and relate 99.6 1E-15 2.2E-20 104.7 7.5 98 16-123 4-119 (219)
127 cd04147 Ras_dva Ras-dva subfam 99.6 1.4E-15 3E-20 103.1 7.8 80 19-106 1-96 (198)
128 cd04137 RheB Rheb (Ras Homolog 99.6 2.1E-15 4.5E-20 100.4 8.1 82 17-106 1-98 (180)
129 cd04129 Rho2 Rho2 subfamily. 99.6 5.9E-15 1.3E-19 99.1 9.5 81 18-106 2-99 (187)
130 cd00154 Rab Rab family. Rab G 99.6 3.9E-15 8.5E-20 96.0 8.3 81 18-106 1-98 (159)
131 cd00157 Rho Rho (Ras homology) 99.6 7.1E-15 1.5E-19 96.6 9.5 81 18-106 1-98 (171)
132 PF08477 Miro: Miro-like prote 99.6 2.6E-15 5.6E-20 93.7 6.3 101 19-124 1-117 (119)
133 cd00876 Ras Ras family. The R 99.6 8.7E-15 1.9E-19 95.0 7.2 95 19-122 1-111 (160)
134 cd04148 RGK RGK subfamily. Th 99.6 1.8E-14 3.9E-19 99.4 8.7 81 18-106 1-98 (221)
135 KOG4252|consensus 99.6 2.7E-16 5.8E-21 103.8 -1.5 95 16-121 19-130 (246)
136 KOG0096|consensus 99.5 3.2E-14 6.8E-19 94.5 5.9 97 16-123 9-122 (216)
137 KOG1673|consensus 99.5 5E-14 1.1E-18 91.1 5.2 95 15-119 18-129 (205)
138 TIGR00231 small_GTP small GTP- 99.5 3.6E-13 7.9E-18 86.3 9.0 82 17-106 1-101 (161)
139 cd04171 SelB SelB subfamily. 99.4 6.2E-13 1.3E-17 86.6 7.4 60 19-84 2-66 (164)
140 cd04105 SR_beta Signal recogni 99.4 1.6E-12 3.4E-17 88.7 7.0 97 19-124 2-118 (203)
141 cd01897 NOG NOG1 is a nucleola 99.4 7.4E-12 1.6E-16 82.1 9.8 56 19-80 2-58 (168)
142 PRK15494 era GTPase Era; Provi 99.4 8.6E-12 1.9E-16 91.1 10.7 61 15-80 50-111 (339)
143 cd01891 TypA_BipA TypA (tyrosi 99.4 4E-12 8.6E-17 85.8 8.2 70 19-88 4-84 (194)
144 KOG0077|consensus 99.3 1.3E-12 2.9E-17 85.3 4.4 94 5-106 7-113 (193)
145 COG2229 Predicted GTPase [Gene 99.3 1E-11 2.2E-16 82.3 7.8 76 13-88 6-87 (187)
146 cd01878 HflX HflX subfamily. 99.3 7.5E-12 1.6E-16 85.0 7.5 86 15-106 39-146 (204)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.3 3.2E-11 7E-16 90.8 10.1 83 15-106 201-306 (442)
148 cd01887 IF2_eIF5B IF2/eIF5B (i 99.3 2.5E-11 5.5E-16 79.4 8.4 64 19-88 2-69 (168)
149 PRK04213 GTP-binding protein; 99.3 6.7E-12 1.5E-16 84.9 5.2 54 15-78 7-61 (201)
150 TIGR03598 GTPase_YsxC ribosome 99.3 2.5E-11 5.4E-16 81.0 7.3 58 13-79 14-74 (179)
151 cd01898 Obg Obg subfamily. Th 99.2 6.1E-11 1.3E-15 77.8 8.1 83 19-106 2-105 (170)
152 KOG4423|consensus 99.2 2.3E-13 5.1E-18 90.3 -3.6 97 16-120 24-140 (229)
153 cd00881 GTP_translation_factor 99.2 1.2E-10 2.6E-15 77.4 9.0 70 19-88 1-81 (189)
154 cd01890 LepA LepA subfamily. 99.2 7.9E-11 1.7E-15 78.0 7.9 83 19-103 2-113 (179)
155 TIGR03156 GTP_HflX GTP-binding 99.2 9.7E-11 2.1E-15 86.0 8.0 81 17-104 189-292 (351)
156 cd01889 SelB_euk SelB subfamil 99.2 7.7E-11 1.7E-15 79.4 6.5 62 18-82 1-81 (192)
157 TIGR03594 GTPase_EngA ribosome 99.2 2.9E-10 6.3E-15 85.2 10.2 62 16-84 171-235 (429)
158 PRK00454 engB GTP-binding prot 99.2 1.1E-10 2.5E-15 78.4 7.3 58 13-79 20-80 (196)
159 TIGR02528 EutP ethanolamine ut 99.2 4.8E-11 1E-15 76.4 4.8 63 19-98 2-80 (142)
160 cd01895 EngA2 EngA2 subfamily. 99.1 7.5E-10 1.6E-14 72.3 10.1 59 17-80 2-61 (174)
161 TIGR00475 selB selenocysteine- 99.1 1.7E-10 3.7E-15 89.5 7.8 61 19-85 2-66 (581)
162 TIGR00487 IF-2 translation ini 99.1 4.4E-10 9.6E-15 87.3 9.7 68 15-88 85-154 (587)
163 PRK03003 GTP-binding protein D 99.1 3.7E-10 7.9E-15 85.9 9.0 56 17-79 211-269 (472)
164 cd04164 trmE TrmE (MnmE, ThdF, 99.1 2E-09 4.3E-14 69.3 10.8 82 18-103 2-103 (157)
165 KOG3883|consensus 99.1 1.2E-09 2.6E-14 70.8 8.3 100 15-121 7-124 (198)
166 cd01881 Obg_like The Obg-like 99.1 3.9E-10 8.4E-15 74.2 6.3 78 22-106 1-106 (176)
167 cd00882 Ras_like_GTPase Ras-li 99.1 2.5E-10 5.5E-15 72.1 5.3 72 22-102 1-90 (157)
168 PRK05291 trmE tRNA modificatio 99.1 1.8E-09 3.8E-14 81.7 10.1 83 15-104 213-318 (449)
169 PRK15467 ethanolamine utilizat 99.0 3.9E-10 8.5E-15 74.0 5.4 45 19-79 3-47 (158)
170 cd04163 Era Era subfamily. Er 99.0 4.2E-09 9.2E-14 68.1 10.2 62 16-81 2-63 (168)
171 PRK05306 infB translation init 99.0 2E-09 4.4E-14 85.8 10.0 68 15-88 288-356 (787)
172 cd01879 FeoB Ferrous iron tran 99.0 2.6E-09 5.7E-14 69.1 8.9 57 22-84 1-58 (158)
173 cd04166 CysN_ATPS CysN_ATPS su 99.0 9E-10 2E-14 75.3 7.0 65 19-83 1-91 (208)
174 PRK00093 GTP-binding protein D 99.0 3E-09 6.6E-14 79.9 10.3 59 16-81 172-233 (435)
175 PRK03003 GTP-binding protein D 99.0 3.6E-09 7.7E-14 80.5 10.4 62 16-81 37-98 (472)
176 PRK12299 obgE GTPase CgtA; Rev 99.0 3.8E-09 8.3E-14 77.1 10.0 81 19-106 160-262 (335)
177 PTZ00099 rab6; Provisional 99.0 1.1E-09 2.5E-14 73.1 6.4 60 39-106 3-78 (176)
178 PF02421 FeoB_N: Ferrous iron 99.0 9.3E-09 2E-13 67.5 10.1 58 18-82 1-60 (156)
179 TIGR00483 EF-1_alpha translati 99.0 3.7E-09 8E-14 79.4 9.2 70 14-83 4-99 (426)
180 TIGR00436 era GTP-binding prot 99.0 6.2E-09 1.4E-13 73.9 9.9 58 19-81 2-60 (270)
181 KOG1707|consensus 99.0 1.2E-09 2.7E-14 83.2 6.5 102 15-124 7-124 (625)
182 PRK11058 GTPase HflX; Provisio 99.0 3E-09 6.6E-14 79.9 8.5 77 18-101 198-297 (426)
183 PRK12317 elongation factor 1-a 99.0 5E-09 1.1E-13 78.7 9.7 70 14-83 3-98 (425)
184 PRK10218 GTP-binding protein; 99.0 4.8E-09 1E-13 81.8 9.8 71 18-88 6-87 (607)
185 CHL00189 infB translation init 99.0 4.3E-09 9.2E-14 83.4 9.6 70 15-88 242-314 (742)
186 cd01896 DRG The developmentall 99.0 7.9E-09 1.7E-13 72.0 9.9 57 19-82 2-60 (233)
187 PF01926 MMR_HSR1: 50S ribosom 98.9 7.3E-09 1.6E-13 64.4 8.0 58 19-80 1-58 (116)
188 PRK09518 bifunctional cytidyla 98.9 3.9E-09 8.5E-14 83.8 8.3 57 17-80 450-509 (712)
189 cd01850 CDC_Septin CDC/Septin. 98.9 9.6E-09 2.1E-13 73.2 9.5 84 15-105 2-92 (276)
190 TIGR03680 eif2g_arch translati 98.9 2.6E-09 5.6E-14 79.9 6.7 28 15-42 2-29 (406)
191 PRK00093 GTP-binding protein D 98.9 9.4E-09 2E-13 77.3 9.7 57 18-81 2-61 (435)
192 PF00009 GTP_EFTU: Elongation 98.9 7.5E-09 1.6E-13 69.6 8.1 70 15-84 1-85 (188)
193 PF04670 Gtr1_RagA: Gtr1/RagA 98.9 3.8E-09 8.3E-14 73.4 6.6 62 19-84 1-63 (232)
194 cd01888 eIF2_gamma eIF2-gamma 98.9 4.8E-09 1E-13 71.5 6.5 23 18-40 1-23 (203)
195 PRK00089 era GTPase Era; Revie 98.9 2.2E-08 4.8E-13 71.6 9.7 61 16-81 4-65 (292)
196 TIGR02729 Obg_CgtA Obg family 98.9 2.6E-08 5.5E-13 72.7 9.8 82 18-106 158-264 (329)
197 COG1160 Predicted GTPases [Gen 98.9 2.7E-08 5.8E-13 74.3 9.8 68 17-88 178-245 (444)
198 TIGR01393 lepA GTP-binding pro 98.8 1.7E-08 3.7E-13 78.7 8.7 84 19-104 5-117 (595)
199 cd01894 EngA1 EngA1 subfamily. 98.8 8E-09 1.7E-13 66.6 5.6 57 21-84 1-60 (157)
200 PRK12297 obgE GTPase CgtA; Rev 98.8 4.5E-08 9.8E-13 73.5 10.3 55 19-80 160-217 (424)
201 PRK10512 selenocysteinyl-tRNA- 98.8 1.6E-08 3.5E-13 79.1 7.9 59 19-83 2-65 (614)
202 cd01884 EF_Tu EF-Tu subfamily. 98.8 2.2E-08 4.7E-13 68.0 7.4 66 17-82 2-78 (195)
203 PRK09554 feoB ferrous iron tra 98.8 4.4E-08 9.6E-13 78.3 10.2 64 16-84 2-65 (772)
204 PF10662 PduV-EutP: Ethanolami 98.8 2.6E-08 5.6E-13 64.3 7.1 23 19-41 3-25 (143)
205 TIGR03594 GTPase_EngA ribosome 98.8 5.7E-08 1.2E-12 72.9 10.0 55 19-80 1-58 (429)
206 PF09439 SRPRB: Signal recogni 98.8 4.6E-09 1E-13 70.4 3.5 96 19-124 5-121 (181)
207 cd01853 Toc34_like Toc34-like 98.8 3.4E-08 7.5E-13 69.4 7.9 64 15-82 29-92 (249)
208 cd00880 Era_like Era (E. coli 98.8 4.9E-08 1.1E-12 62.3 8.0 60 22-85 1-61 (163)
209 PRK04000 translation initiatio 98.8 2E-08 4.4E-13 75.2 6.8 28 14-41 6-33 (411)
210 cd01883 EF1_alpha Eukaryotic e 98.8 2.9E-08 6.2E-13 68.4 6.7 65 19-83 1-91 (219)
211 PRK12296 obgE GTPase CgtA; Rev 98.8 6.8E-08 1.5E-12 73.7 9.1 58 17-79 159-216 (500)
212 cd04168 TetM_like Tet(M)-like 98.7 9.9E-08 2.1E-12 66.6 9.0 70 19-88 1-83 (237)
213 cd01859 MJ1464 MJ1464. This f 98.7 3.3E-08 7.2E-13 64.5 6.3 55 16-78 100-155 (156)
214 TIGR00485 EF-Tu translation el 98.7 5.3E-08 1.2E-12 72.6 8.0 70 14-83 9-89 (394)
215 cd04167 Snu114p Snu114p subfam 98.7 6.2E-08 1.4E-12 66.4 7.8 87 19-106 2-119 (213)
216 smart00275 G_alpha G protein a 98.7 9.1E-08 2E-12 70.2 8.6 34 55-88 170-203 (342)
217 KOG0090|consensus 98.7 2.6E-08 5.6E-13 67.8 4.8 99 18-125 39-155 (238)
218 TIGR00437 feoB ferrous iron tr 98.7 1.1E-07 2.3E-12 74.3 8.7 54 24-85 1-57 (591)
219 PLN03126 Elongation factor Tu; 98.7 1.4E-07 3E-12 71.9 9.1 69 14-82 78-157 (478)
220 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 4.8E-08 1E-12 62.9 5.7 55 18-79 84-138 (141)
221 PRK09518 bifunctional cytidyla 98.7 2E-07 4.4E-12 74.2 10.3 62 16-81 274-335 (712)
222 cd00066 G-alpha G protein alph 98.7 2.1E-07 4.5E-12 67.6 9.1 34 55-88 147-180 (317)
223 COG1159 Era GTPase [General fu 98.7 2.6E-07 5.7E-12 65.8 9.2 62 16-81 5-66 (298)
224 TIGR01394 TypA_BipA GTP-bindin 98.7 1.5E-07 3.3E-12 73.4 8.7 66 19-84 3-79 (594)
225 cd04169 RF3 RF3 subfamily. Pe 98.7 2.4E-07 5.2E-12 65.8 9.0 66 19-84 4-86 (267)
226 cd04104 p47_IIGP_like p47 (47- 98.7 3.2E-08 7E-13 67.1 4.4 23 17-39 1-23 (197)
227 TIGR00491 aIF-2 translation in 98.7 5.9E-08 1.3E-12 75.6 6.3 66 19-88 6-88 (590)
228 PRK12736 elongation factor Tu; 98.7 1.2E-07 2.7E-12 70.7 7.7 70 14-83 9-89 (394)
229 PF05049 IIGP: Interferon-indu 98.6 7E-08 1.5E-12 71.2 6.1 65 15-81 33-98 (376)
230 COG0486 ThdF Predicted GTPase 98.6 1.1E-07 2.3E-12 71.3 7.0 67 15-85 215-281 (454)
231 PRK05506 bifunctional sulfate 98.6 1.9E-07 4.1E-12 73.4 8.8 72 12-83 19-118 (632)
232 cd04165 GTPBP1_like GTPBP1-lik 98.6 1.3E-07 2.8E-12 65.5 7.0 24 19-42 1-25 (224)
233 cd01876 YihA_EngB The YihA (En 98.6 6.8E-08 1.5E-12 62.6 5.3 52 19-79 1-55 (170)
234 PRK05124 cysN sulfate adenylyl 98.6 1.6E-07 3.5E-12 71.6 7.8 70 14-83 24-121 (474)
235 PRK12735 elongation factor Tu; 98.6 2.2E-07 4.8E-12 69.3 8.2 68 15-82 10-88 (396)
236 cd04170 EF-G_bact Elongation f 98.6 3.1E-07 6.7E-12 65.1 8.5 65 19-83 1-78 (268)
237 cd01852 AIG1 AIG1 (avrRpt2-ind 98.6 1.3E-07 2.8E-12 64.0 6.3 59 18-81 1-61 (196)
238 TIGR00991 3a0901s02IAP34 GTP-b 98.6 2.3E-07 5E-12 66.9 7.8 64 15-82 36-99 (313)
239 PRK13351 elongation factor G; 98.6 3E-07 6.4E-12 73.0 9.0 87 16-102 7-118 (687)
240 PF04548 AIG1: AIG1 family; I 98.6 2.5E-07 5.5E-12 63.5 7.4 58 18-79 1-59 (212)
241 TIGR02034 CysN sulfate adenyly 98.6 1.8E-07 3.9E-12 70.0 7.1 66 18-83 1-94 (406)
242 COG1084 Predicted GTPase [Gene 98.6 6.9E-07 1.5E-11 64.5 9.4 56 17-79 168-225 (346)
243 PRK04004 translation initiatio 98.6 1.1E-07 2.3E-12 74.2 5.7 69 17-88 6-90 (586)
244 CHL00071 tufA elongation facto 98.5 4.4E-07 9.5E-12 68.0 8.1 69 14-82 9-88 (409)
245 cd01858 NGP_1 NGP-1. Autoanti 98.5 3.7E-07 8.1E-12 59.7 6.7 24 16-39 101-124 (157)
246 cd04178 Nucleostemin_like Nucl 98.5 4.2E-07 9E-12 60.6 6.9 56 16-78 116-171 (172)
247 COG1160 Predicted GTPases [Gen 98.5 5.5E-07 1.2E-11 67.4 8.2 59 18-80 4-62 (444)
248 PRK00049 elongation factor Tu; 98.5 4.6E-07 9.9E-12 67.7 7.6 69 14-82 9-88 (396)
249 cd01856 YlqF YlqF. Proteins o 98.5 4.1E-07 8.9E-12 60.3 6.6 57 15-79 113-170 (171)
250 PRK12298 obgE GTPase CgtA; Rev 98.5 1.5E-06 3.2E-11 64.9 9.9 58 19-81 161-219 (390)
251 PRK05433 GTP-binding protein L 98.5 8.4E-07 1.8E-11 69.4 8.3 70 19-88 9-93 (600)
252 PF00735 Septin: Septin; Inte 98.5 8.2E-07 1.8E-11 63.5 7.6 64 16-79 3-73 (281)
253 PRK09563 rbgA GTPase YlqF; Rev 98.4 7.6E-07 1.7E-11 63.8 6.9 59 15-80 119-177 (287)
254 PTZ00141 elongation factor 1- 98.4 1.2E-06 2.5E-11 66.5 8.1 69 14-82 4-98 (446)
255 cd01886 EF-G Elongation factor 98.4 2.2E-06 4.8E-11 61.0 9.1 66 19-84 1-79 (270)
256 TIGR03596 GTPase_YlqF ribosome 98.4 7.9E-07 1.7E-11 63.4 6.7 58 15-79 116-173 (276)
257 KOG1191|consensus 98.4 1.5E-06 3.2E-11 65.6 8.0 82 15-104 266-347 (531)
258 COG3596 Predicted GTPase [Gene 98.4 2.9E-07 6.2E-12 65.1 4.0 61 13-81 35-99 (296)
259 smart00010 small_GTPase Small 98.4 6.2E-07 1.3E-11 55.6 4.8 25 18-42 1-26 (124)
260 PRK09602 translation-associate 98.4 9.1E-07 2E-11 66.1 6.1 22 18-39 2-23 (396)
261 KOG1423|consensus 98.4 1.5E-06 3.2E-11 62.5 6.5 61 15-80 70-131 (379)
262 PLN00043 elongation factor 1-a 98.3 2.4E-06 5.2E-11 64.8 7.7 70 14-83 4-99 (447)
263 COG0370 FeoB Fe2+ transport sy 98.3 7E-06 1.5E-10 64.2 10.0 62 16-84 2-65 (653)
264 cd01899 Ygr210 Ygr210 subfamil 98.3 1.1E-06 2.3E-11 63.9 5.1 59 20-79 1-79 (318)
265 COG1161 Predicted GTPases [Gen 98.3 2.6E-06 5.6E-11 62.1 6.9 58 14-80 129-188 (322)
266 cd01855 YqeH YqeH. YqeH is an 98.3 2.7E-06 5.8E-11 57.2 6.5 23 17-39 127-149 (190)
267 PF05783 DLIC: Dynein light in 98.3 3.3E-06 7.1E-11 64.3 7.4 81 16-106 24-127 (472)
268 cd01885 EF2 EF2 (for archaea a 98.3 5.9E-06 1.3E-10 57.2 8.1 19 19-37 2-20 (222)
269 PLN03127 Elongation factor Tu; 98.3 5E-06 1.1E-10 63.1 8.4 69 14-82 58-137 (447)
270 PRK00741 prfC peptide chain re 98.3 5.7E-06 1.2E-10 63.9 8.7 68 17-84 10-94 (526)
271 TIGR00484 EF-G translation elo 98.3 8.5E-06 1.8E-10 64.9 9.7 67 18-84 11-90 (689)
272 KOG0082|consensus 98.3 5.8E-06 1.2E-10 60.6 7.7 34 55-88 181-214 (354)
273 COG5019 CDC3 Septin family pro 98.2 1.5E-05 3.3E-10 58.4 9.5 86 14-106 20-112 (373)
274 COG0218 Predicted GTPase [Gene 98.2 5.1E-06 1.1E-10 56.3 5.9 56 16-78 23-79 (200)
275 cd01849 YlqF_related_GTPase Yl 98.2 6.1E-06 1.3E-10 53.8 5.8 57 15-78 98-154 (155)
276 TIGR00503 prfC peptide chain r 98.2 1.8E-05 3.9E-10 61.2 9.1 69 16-84 10-95 (527)
277 TIGR00490 aEF-2 translation el 98.1 6.1E-06 1.3E-10 66.0 6.1 68 16-84 18-101 (720)
278 PRK09601 GTP-binding protein Y 98.1 9.5E-06 2.1E-10 59.9 6.7 23 18-40 3-25 (364)
279 PRK12289 GTPase RsgA; Reviewed 98.1 1.9E-05 4.2E-10 58.2 8.1 31 6-39 164-194 (352)
280 KOG2655|consensus 98.1 4.4E-05 9.6E-10 56.2 9.3 92 7-105 10-108 (366)
281 cd01900 YchF YchF subfamily. 98.1 7.6E-06 1.7E-10 58.4 5.3 21 20-40 1-21 (274)
282 PTZ00258 GTP-binding protein; 98.1 1.3E-05 2.7E-10 59.8 6.6 26 15-40 19-44 (390)
283 KOG3905|consensus 98.1 8.5E-06 1.8E-10 59.2 5.4 80 17-106 52-154 (473)
284 TIGR00157 ribosome small subun 98.1 2.3E-05 5E-10 55.1 7.5 69 6-82 112-184 (245)
285 PRK12288 GTPase RsgA; Reviewed 98.1 2.1E-05 4.5E-10 58.0 7.3 72 6-84 197-272 (347)
286 COG1163 DRG Predicted GTPase [ 98.0 1.6E-05 3.4E-10 57.6 5.6 57 16-79 62-120 (365)
287 TIGR00993 3a0901s04IAP86 chlor 98.0 2.6E-05 5.6E-10 61.5 7.2 59 17-81 118-178 (763)
288 KOG3886|consensus 98.0 2.1E-06 4.5E-11 59.6 1.0 59 17-82 4-66 (295)
289 COG0532 InfB Translation initi 97.9 4.9E-05 1.1E-09 58.1 7.3 101 20-125 8-154 (509)
290 KOG1547|consensus 97.9 0.00011 2.5E-09 51.4 8.0 66 14-79 43-114 (336)
291 COG5256 TEF1 Translation elong 97.9 5.9E-05 1.3E-09 56.2 6.9 69 14-82 4-98 (428)
292 PTZ00327 eukaryotic translatio 97.9 3.7E-05 8.1E-10 58.6 5.9 30 10-39 27-56 (460)
293 cd01854 YjeQ_engC YjeQ/EngC. 97.9 6.9E-05 1.5E-09 53.8 6.9 23 18-40 162-184 (287)
294 PRK12739 elongation factor G; 97.8 6.9E-05 1.5E-09 59.8 7.3 69 16-84 7-88 (691)
295 TIGR03597 GTPase_YqeH ribosome 97.8 4.1E-05 8.9E-10 56.7 5.4 62 17-81 154-216 (360)
296 PF03266 NTPase_1: NTPase; In 97.8 7.7E-05 1.7E-09 49.6 6.2 53 19-79 1-56 (168)
297 COG1618 Predicted nucleotide k 97.8 0.00011 2.4E-09 48.4 6.5 55 15-77 3-59 (179)
298 PRK13796 GTPase YqeH; Provisio 97.8 7.5E-05 1.6E-09 55.4 6.3 22 17-38 160-181 (365)
299 PRK12740 elongation factor G; 97.7 0.00018 3.9E-09 57.2 8.1 62 23-84 1-75 (668)
300 cd01851 GBP Guanylate-binding 97.7 0.00011 2.4E-09 50.9 6.0 60 17-81 7-72 (224)
301 PF13207 AAA_17: AAA domain; P 97.7 4E-05 8.6E-10 47.6 3.2 22 19-40 1-22 (121)
302 KOG1145|consensus 97.7 0.00018 4E-09 55.5 6.9 65 20-88 156-220 (683)
303 PRK00098 GTPase RsgA; Reviewed 97.7 0.00013 2.9E-09 52.6 5.9 22 19-40 166-187 (298)
304 PRK00007 elongation factor G; 97.6 0.0002 4.4E-09 57.2 6.9 66 17-82 10-88 (693)
305 COG4917 EutP Ethanolamine util 97.6 9.6E-05 2.1E-09 46.8 3.9 24 19-42 3-26 (148)
306 PRK08118 topology modulation p 97.6 6.3E-05 1.4E-09 49.9 3.0 23 19-41 3-25 (167)
307 cd01882 BMS1 Bms1. Bms1 is an 97.6 0.00026 5.6E-09 49.1 6.2 26 15-40 37-62 (225)
308 COG2895 CysN GTPases - Sulfate 97.6 0.00025 5.4E-09 52.2 6.2 110 14-124 3-186 (431)
309 PF03193 DUF258: Protein of un 97.6 6.9E-05 1.5E-09 49.4 3.0 22 19-40 37-58 (161)
310 KOG1707|consensus 97.5 0.00051 1.1E-08 53.3 7.4 98 14-124 422-535 (625)
311 COG0563 Adk Adenylate kinase a 97.5 9.2E-05 2E-09 49.7 3.0 23 19-41 2-24 (178)
312 PRK07261 topology modulation p 97.5 0.00011 2.3E-09 48.9 3.1 22 19-40 2-23 (171)
313 COG1126 GlnQ ABC-type polar am 97.5 9.7E-05 2.1E-09 50.9 2.8 21 19-39 30-50 (240)
314 COG1162 Predicted GTPases [Gen 97.5 0.0005 1.1E-08 49.6 6.4 21 19-39 166-186 (301)
315 TIGR02836 spore_IV_A stage IV 97.5 0.0043 9.4E-08 47.0 11.4 26 15-40 15-40 (492)
316 PF13671 AAA_33: AAA domain; P 97.5 0.00012 2.7E-09 46.6 3.0 19 20-38 2-20 (143)
317 PRK06547 hypothetical protein; 97.4 0.00029 6.3E-09 47.0 4.6 37 4-40 2-38 (172)
318 TIGR00092 GTP-binding protein 97.4 0.00066 1.4E-08 50.4 6.2 24 18-41 3-26 (368)
319 cd03116 MobB Molybdenum is an 97.4 0.00021 4.6E-09 47.1 3.3 24 19-42 3-26 (159)
320 COG1116 TauB ABC-type nitrate/ 97.3 0.00017 3.8E-09 50.5 2.8 20 20-39 32-51 (248)
321 PF13521 AAA_28: AAA domain; P 97.3 0.00016 3.4E-09 47.4 2.5 21 19-39 1-21 (163)
322 PF00005 ABC_tran: ABC transpo 97.3 0.00029 6.4E-09 44.6 3.3 24 19-42 13-36 (137)
323 cd00071 GMPK Guanosine monopho 97.3 0.00027 5.9E-09 45.3 3.0 23 20-42 2-24 (137)
324 PRK06217 hypothetical protein; 97.3 0.00029 6.2E-09 47.2 3.1 23 18-40 2-24 (183)
325 KOG1486|consensus 97.3 0.00077 1.7E-08 47.7 5.2 59 15-79 60-119 (364)
326 COG0012 Predicted GTPase, prob 97.2 0.00087 1.9E-08 49.6 5.6 60 17-79 2-77 (372)
327 PRK10751 molybdopterin-guanine 97.2 0.00039 8.5E-09 46.4 3.5 24 18-41 7-30 (173)
328 KOG3859|consensus 97.2 0.0025 5.5E-08 45.8 7.6 68 8-79 33-105 (406)
329 PF13238 AAA_18: AAA domain; P 97.2 0.00036 7.9E-09 43.3 2.9 21 20-40 1-21 (129)
330 cd02019 NK Nucleoside/nucleoti 97.2 0.0004 8.6E-09 39.2 2.8 22 20-41 2-23 (69)
331 KOG1489|consensus 97.2 0.0018 3.9E-08 47.1 6.7 55 19-80 198-255 (366)
332 cd00009 AAA The AAA+ (ATPases 97.2 0.00071 1.5E-08 42.3 4.3 36 6-41 8-43 (151)
333 COG3839 MalK ABC-type sugar tr 97.2 0.0003 6.5E-09 51.6 2.8 21 20-40 32-52 (338)
334 COG1136 SalX ABC-type antimicr 97.2 0.00033 7.2E-09 48.6 2.9 21 19-39 33-53 (226)
335 COG4525 TauB ABC-type taurine 97.2 0.00033 7.2E-09 47.9 2.7 21 19-39 33-53 (259)
336 smart00382 AAA ATPases associa 97.2 0.00047 1E-08 42.7 3.3 24 19-42 4-27 (148)
337 COG1125 OpuBA ABC-type proline 97.2 0.00054 1.2E-08 48.5 3.8 20 20-39 30-49 (309)
338 TIGR00235 udk uridine kinase. 97.2 0.00054 1.2E-08 46.8 3.7 28 15-42 4-31 (207)
339 TIGR03263 guanyl_kin guanylate 97.2 0.00041 8.8E-09 46.0 3.0 23 19-41 3-25 (180)
340 PF00004 AAA: ATPase family as 97.1 0.00043 9.4E-09 43.2 2.9 20 20-39 1-20 (132)
341 PF00503 G-alpha: G-protein al 97.1 0.00045 9.8E-09 51.6 3.3 34 55-88 221-255 (389)
342 COG2262 HflX GTPases [General 97.1 0.0049 1.1E-07 46.1 8.6 57 18-79 193-250 (411)
343 PRK10078 ribose 1,5-bisphospho 97.1 0.00044 9.6E-09 46.4 2.9 22 19-40 4-25 (186)
344 PRK05480 uridine/cytidine kina 97.1 0.00059 1.3E-08 46.5 3.5 27 15-41 4-30 (209)
345 PRK00300 gmk guanylate kinase; 97.1 0.00069 1.5E-08 45.9 3.7 26 17-42 5-30 (205)
346 PLN00116 translation elongatio 97.1 0.0013 2.8E-08 53.8 5.6 23 16-38 18-41 (843)
347 COG3638 ABC-type phosphate/pho 97.1 0.00049 1.1E-08 48.1 2.8 21 19-39 32-52 (258)
348 COG3842 PotA ABC-type spermidi 97.1 0.00047 1E-08 50.9 2.8 20 20-39 34-53 (352)
349 PRK14530 adenylate kinase; Pro 97.1 0.00055 1.2E-08 47.0 3.0 22 19-40 5-26 (215)
350 PRK03839 putative kinase; Prov 97.1 0.00057 1.2E-08 45.5 3.0 22 19-40 2-23 (180)
351 TIGR02322 phosphon_PhnN phosph 97.1 0.00054 1.2E-08 45.5 2.9 22 19-40 3-24 (179)
352 PRK14737 gmk guanylate kinase; 97.1 0.00058 1.3E-08 46.1 3.0 23 19-41 6-28 (186)
353 PF13555 AAA_29: P-loop contai 97.1 0.00073 1.6E-08 37.5 2.9 19 20-38 26-44 (62)
354 PRK14532 adenylate kinase; Pro 97.0 0.00055 1.2E-08 45.8 2.9 22 19-40 2-23 (188)
355 TIGR00101 ureG urease accessor 97.0 0.00075 1.6E-08 46.0 3.5 22 18-39 2-23 (199)
356 TIGR01360 aden_kin_iso1 adenyl 97.0 0.00054 1.2E-08 45.6 2.8 20 19-38 5-24 (188)
357 PRK08233 hypothetical protein; 97.0 0.0008 1.7E-08 44.5 3.5 25 18-42 4-28 (182)
358 PHA00729 NTP-binding motif con 97.0 0.0015 3.3E-08 45.4 4.9 35 5-39 5-39 (226)
359 KOG1532|consensus 97.0 0.00078 1.7E-08 48.2 3.4 26 13-38 15-40 (366)
360 PRK14531 adenylate kinase; Pro 97.0 0.00069 1.5E-08 45.4 3.1 23 18-40 3-25 (183)
361 COG4107 PhnK ABC-type phosphon 97.0 0.00071 1.5E-08 45.6 3.0 24 20-43 35-58 (258)
362 COG1117 PstB ABC-type phosphat 97.0 0.00056 1.2E-08 47.3 2.5 19 20-38 36-54 (253)
363 PF07728 AAA_5: AAA domain (dy 97.0 0.00072 1.6E-08 43.0 2.9 22 20-41 2-23 (139)
364 PRK14738 gmk guanylate kinase; 97.0 0.00084 1.8E-08 45.9 3.4 24 15-38 11-34 (206)
365 PRK02496 adk adenylate kinase; 97.0 0.00081 1.8E-08 44.9 3.2 23 18-40 2-24 (184)
366 COG1120 FepC ABC-type cobalami 97.0 0.00072 1.6E-08 47.9 3.0 23 20-42 31-53 (258)
367 COG4987 CydC ABC-type transpor 97.0 0.0011 2.5E-08 51.1 4.2 27 17-43 364-390 (573)
368 cd03238 ABC_UvrA The excision 97.0 0.00077 1.7E-08 45.1 3.0 21 17-37 21-41 (176)
369 cd01428 ADK Adenylate kinase ( 97.0 0.00063 1.4E-08 45.5 2.6 22 19-40 1-22 (194)
370 PTZ00088 adenylate kinase 1; P 97.0 0.00081 1.8E-08 46.9 3.1 25 16-40 5-29 (229)
371 KOG2484|consensus 96.9 0.0014 3.1E-08 48.9 4.3 56 15-79 250-307 (435)
372 TIGR01351 adk adenylate kinase 96.9 0.00068 1.5E-08 46.4 2.6 22 19-40 1-22 (210)
373 PF04665 Pox_A32: Poxvirus A32 96.9 0.00096 2.1E-08 46.8 3.3 23 15-37 11-33 (241)
374 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.9 0.00096 2.1E-08 45.7 3.3 23 19-41 32-54 (218)
375 KOG1491|consensus 96.9 0.0021 4.5E-08 47.2 5.0 24 16-39 19-42 (391)
376 PTZ00416 elongation factor 2; 96.9 0.0022 4.8E-08 52.4 5.7 23 16-38 18-41 (836)
377 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.9 0.0065 1.4E-07 41.2 7.3 68 19-106 40-111 (205)
378 PF13191 AAA_16: AAA ATPase do 96.9 0.00076 1.6E-08 44.5 2.6 24 16-39 23-46 (185)
379 PF00350 Dynamin_N: Dynamin fa 96.9 0.00092 2E-08 43.7 2.9 20 20-39 1-20 (168)
380 KOG0099|consensus 96.9 0.00046 9.9E-09 49.1 1.5 33 56-88 189-221 (379)
381 PF05729 NACHT: NACHT domain 96.9 0.00083 1.8E-08 43.4 2.7 25 20-44 3-27 (166)
382 cd00820 PEPCK_HprK Phosphoenol 96.9 0.00081 1.7E-08 41.5 2.4 20 18-37 16-35 (107)
383 cd02023 UMPK Uridine monophosp 96.9 0.0009 1.9E-08 45.2 2.8 22 20-41 2-23 (198)
384 PRK13949 shikimate kinase; Pro 96.9 0.001 2.2E-08 44.1 3.1 21 19-39 3-23 (169)
385 TIGR01359 UMP_CMP_kin_fam UMP- 96.9 0.00091 2E-08 44.5 2.8 21 20-40 2-22 (183)
386 cd03222 ABC_RNaseL_inhibitor T 96.9 0.0011 2.4E-08 44.4 3.1 24 18-41 26-49 (177)
387 PF13479 AAA_24: AAA domain 96.9 0.001 2.2E-08 45.7 3.1 24 15-38 1-24 (213)
388 COG0194 Gmk Guanylate kinase [ 96.9 0.001 2.2E-08 44.9 2.9 23 19-41 6-28 (191)
389 PF13401 AAA_22: AAA domain; P 96.9 0.0011 2.4E-08 41.4 3.0 24 18-41 5-28 (131)
390 PF03029 ATP_bind_1: Conserved 96.9 0.00096 2.1E-08 46.7 2.8 21 22-42 1-21 (238)
391 PLN02200 adenylate kinase fami 96.9 0.0012 2.7E-08 46.0 3.4 25 15-39 41-65 (234)
392 cd03292 ABC_FtsE_transporter F 96.9 0.0012 2.7E-08 45.0 3.3 23 19-41 29-51 (214)
393 TIGR00960 3a0501s02 Type II (G 96.9 0.0012 2.6E-08 45.1 3.3 23 19-41 31-53 (216)
394 cd03264 ABC_drug_resistance_li 96.8 0.0011 2.4E-08 45.2 3.0 23 19-41 27-49 (211)
395 TIGR03608 L_ocin_972_ABC putat 96.8 0.0013 2.8E-08 44.6 3.3 23 19-41 26-48 (206)
396 cd03226 ABC_cobalt_CbiO_domain 96.8 0.0013 2.8E-08 44.7 3.3 23 19-41 28-50 (205)
397 TIGR02315 ABC_phnC phosphonate 96.8 0.0013 2.7E-08 45.8 3.3 23 19-41 30-52 (243)
398 PLN02674 adenylate kinase 96.8 0.002 4.4E-08 45.3 4.3 27 15-41 29-55 (244)
399 COG2274 SunT ABC-type bacterio 96.8 0.0012 2.7E-08 52.9 3.5 25 18-42 500-524 (709)
400 PRK07560 elongation factor EF- 96.8 0.0031 6.7E-08 50.8 5.8 19 19-37 22-40 (731)
401 cd03262 ABC_HisP_GlnQ_permease 96.8 0.0013 2.9E-08 44.7 3.3 23 19-41 28-50 (213)
402 TIGR01313 therm_gnt_kin carboh 96.8 0.0009 2E-08 43.7 2.4 21 20-40 1-21 (163)
403 cd03225 ABC_cobalt_CbiO_domain 96.8 0.0014 2.9E-08 44.7 3.3 23 19-41 29-51 (211)
404 PF00625 Guanylate_kin: Guanyl 96.8 0.0012 2.6E-08 44.2 3.0 23 20-42 5-27 (183)
405 PF01637 Arch_ATPase: Archaeal 96.8 0.0014 3.1E-08 44.6 3.4 32 7-38 10-41 (234)
406 TIGR02673 FtsE cell division A 96.8 0.0014 3E-08 44.8 3.3 23 19-41 30-52 (214)
407 cd03265 ABC_DrrA DrrA is the A 96.8 0.0014 3E-08 45.0 3.3 24 18-41 27-50 (220)
408 TIGR01166 cbiO cobalt transpor 96.8 0.0013 2.7E-08 44.2 3.1 23 19-41 20-42 (190)
409 cd03261 ABC_Org_Solvent_Resist 96.8 0.0014 3E-08 45.5 3.3 23 19-41 28-50 (235)
410 PF03205 MobB: Molybdopterin g 96.8 0.0014 3E-08 42.3 3.1 23 19-41 2-24 (140)
411 TIGR03797 NHPM_micro_ABC2 NHPM 96.8 0.0019 4E-08 51.6 4.3 27 16-42 478-504 (686)
412 cd03224 ABC_TM1139_LivF_branch 96.8 0.0014 3.1E-08 44.9 3.2 24 18-41 27-50 (222)
413 cd03257 ABC_NikE_OppD_transpor 96.8 0.0014 3.1E-08 45.0 3.3 23 19-41 33-55 (228)
414 TIGR02211 LolD_lipo_ex lipopro 96.8 0.0015 3.2E-08 44.8 3.3 23 19-41 33-55 (221)
415 cd03269 ABC_putative_ATPase Th 96.8 0.0015 3.2E-08 44.5 3.3 23 19-41 28-50 (210)
416 cd03218 ABC_YhbG The ABC trans 96.8 0.0015 3.2E-08 45.2 3.3 23 19-41 28-50 (232)
417 cd03259 ABC_Carb_Solutes_like 96.8 0.0015 3.3E-08 44.6 3.3 23 19-41 28-50 (213)
418 PRK09270 nucleoside triphospha 96.8 0.0028 6.1E-08 43.9 4.6 28 15-42 31-58 (229)
419 cd01672 TMPK Thymidine monopho 96.8 0.0012 2.6E-08 44.1 2.7 23 20-42 3-25 (200)
420 TIGR01189 ccmA heme ABC export 96.8 0.0016 3.5E-08 44.0 3.3 24 18-41 27-50 (198)
421 cd03219 ABC_Mj1267_LivG_branch 96.8 0.0015 3.2E-08 45.3 3.2 23 19-41 28-50 (236)
422 PRK13695 putative NTPase; Prov 96.8 0.0014 3E-08 43.5 2.9 23 18-40 1-23 (174)
423 COG4559 ABC-type hemin transpo 96.7 0.0017 3.6E-08 45.0 3.2 23 20-42 30-52 (259)
424 PRK13541 cytochrome c biogenes 96.7 0.0017 3.7E-08 43.8 3.3 23 19-41 28-50 (195)
425 TIGR02858 spore_III_AA stage I 96.7 0.0058 1.3E-07 43.7 6.1 35 8-42 101-136 (270)
426 KOG3887|consensus 96.7 0.00097 2.1E-08 47.0 2.1 61 18-82 28-88 (347)
427 cd03235 ABC_Metallic_Cations A 96.7 0.0016 3.4E-08 44.5 3.2 23 19-41 27-49 (213)
428 PRK13540 cytochrome c biogenes 96.7 0.0017 3.7E-08 44.0 3.3 24 18-41 28-51 (200)
429 PRK10908 cell division protein 96.7 0.0017 3.7E-08 44.6 3.3 24 18-41 29-52 (222)
430 cd03258 ABC_MetN_methionine_tr 96.7 0.0017 3.6E-08 45.0 3.3 24 18-41 32-55 (233)
431 cd03216 ABC_Carb_Monos_I This 96.7 0.0018 3.9E-08 42.6 3.3 23 19-41 28-50 (163)
432 cd03229 ABC_Class3 This class 96.7 0.0018 3.9E-08 43.1 3.3 23 19-41 28-50 (178)
433 PRK05057 aroK shikimate kinase 96.7 0.0016 3.5E-08 43.3 3.1 23 18-40 5-27 (172)
434 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.0017 3.7E-08 44.5 3.3 23 19-41 32-54 (220)
435 cd03266 ABC_NatA_sodium_export 96.7 0.0017 3.7E-08 44.4 3.3 24 18-41 32-55 (218)
436 PRK14528 adenylate kinase; Pro 96.7 0.0016 3.4E-08 43.8 3.0 22 19-40 3-24 (186)
437 COG3840 ThiQ ABC-type thiamine 96.7 0.0016 3.5E-08 44.2 2.9 21 19-39 27-47 (231)
438 PRK00279 adk adenylate kinase; 96.7 0.0016 3.4E-08 44.7 3.1 22 19-40 2-23 (215)
439 cd03301 ABC_MalK_N The N-termi 96.7 0.0018 3.9E-08 44.2 3.3 23 19-41 28-50 (213)
440 PRK13543 cytochrome c biogenes 96.7 0.0018 3.8E-08 44.4 3.3 24 19-42 39-62 (214)
441 PRK14529 adenylate kinase; Pro 96.7 0.0014 3.1E-08 45.5 2.8 23 19-41 2-24 (223)
442 PRK11176 lipid transporter ATP 96.7 0.0022 4.8E-08 50.1 4.2 26 17-42 369-394 (582)
443 cd03215 ABC_Carb_Monos_II This 96.7 0.0018 4E-08 43.2 3.3 23 19-41 28-50 (182)
444 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.7 0.0017 3.7E-08 41.9 3.0 23 19-41 28-50 (144)
445 cd03263 ABC_subfamily_A The AB 96.7 0.0018 3.9E-08 44.4 3.3 23 19-41 30-52 (220)
446 PRK10895 lipopolysaccharide AB 96.7 0.0018 3.9E-08 45.1 3.3 23 19-41 31-53 (241)
447 cd03223 ABCD_peroxisomal_ALDP 96.7 0.0019 4.2E-08 42.5 3.3 24 18-41 28-51 (166)
448 smart00072 GuKc Guanylate kina 96.7 0.0017 3.7E-08 43.5 3.1 22 20-41 5-26 (184)
449 COG0378 HypB Ni2+-binding GTPa 96.7 0.0019 4.1E-08 43.9 3.2 25 18-42 14-38 (202)
450 PRK11629 lolD lipoprotein tran 96.7 0.0019 4E-08 44.8 3.3 23 19-41 37-59 (233)
451 cd03214 ABC_Iron-Siderophores_ 96.7 0.002 4.3E-08 43.0 3.3 24 18-41 26-49 (180)
452 COG4619 ABC-type uncharacteriz 96.7 0.0026 5.5E-08 42.7 3.7 21 19-39 31-51 (223)
453 PRK06762 hypothetical protein; 96.7 0.0016 3.5E-08 42.7 2.8 23 19-41 4-26 (166)
454 cd03260 ABC_PstB_phosphate_tra 96.7 0.0017 3.8E-08 44.7 3.1 23 19-41 28-50 (227)
455 PF00485 PRK: Phosphoribulokin 96.7 0.0018 3.9E-08 43.7 3.1 25 20-44 2-26 (194)
456 PRK15177 Vi polysaccharide exp 96.7 0.0019 4.1E-08 44.3 3.3 23 19-41 15-37 (213)
457 cd01130 VirB11-like_ATPase Typ 96.7 0.002 4.3E-08 43.3 3.3 25 17-41 25-49 (186)
458 PRK10790 putative multidrug tr 96.7 0.0022 4.9E-08 50.2 4.0 27 16-42 366-392 (592)
459 TIGR03864 PQQ_ABC_ATP ABC tran 96.7 0.002 4.2E-08 44.8 3.3 23 19-41 29-51 (236)
460 cd03268 ABC_BcrA_bacitracin_re 96.7 0.002 4.3E-08 43.8 3.3 24 18-41 27-50 (208)
461 PRK13538 cytochrome c biogenes 96.7 0.002 4.4E-08 43.8 3.3 23 19-41 29-51 (204)
462 cd03256 ABC_PhnC_transporter A 96.7 0.002 4.3E-08 44.8 3.3 23 19-41 29-51 (241)
463 PRK08099 bifunctional DNA-bind 96.7 0.0017 3.6E-08 48.9 3.1 24 17-40 219-242 (399)
464 PRK11248 tauB taurine transpor 96.7 0.002 4.3E-08 45.4 3.3 23 19-41 29-51 (255)
465 PRK10463 hydrogenase nickel in 96.7 0.0034 7.4E-08 45.2 4.5 30 9-38 96-125 (290)
466 PRK11124 artP arginine transpo 96.7 0.002 4.4E-08 44.8 3.3 23 19-41 30-52 (242)
467 KOG2485|consensus 96.7 0.0048 1E-07 44.7 5.2 24 15-38 141-164 (335)
468 PRK11247 ssuB aliphatic sulfon 96.7 0.002 4.4E-08 45.5 3.3 23 19-41 40-62 (257)
469 cd03231 ABC_CcmA_heme_exporter 96.7 0.0021 4.6E-08 43.6 3.3 25 17-41 26-50 (201)
470 cd03230 ABC_DR_subfamily_A Thi 96.7 0.0022 4.8E-08 42.5 3.3 24 18-41 27-50 (173)
471 cd03297 ABC_ModC_molybdenum_tr 96.7 0.0021 4.5E-08 44.0 3.3 24 18-41 24-47 (214)
472 TIGR02323 CP_lyasePhnK phospho 96.7 0.002 4.4E-08 45.1 3.3 25 18-42 30-54 (253)
473 cd02021 GntK Gluconate kinase 96.6 0.0019 4.2E-08 41.6 2.9 21 20-40 2-22 (150)
474 PLN02459 probable adenylate ki 96.6 0.0019 4.2E-08 45.8 3.1 26 14-39 26-51 (261)
475 cd03247 ABCC_cytochrome_bd The 96.6 0.0022 4.9E-08 42.6 3.3 23 19-41 30-52 (178)
476 TIGR03015 pepcterm_ATPase puta 96.6 0.0019 4.1E-08 45.5 3.1 24 17-40 43-66 (269)
477 TIGR01978 sufC FeS assembly AT 96.6 0.0019 4.1E-08 44.9 3.1 22 19-40 28-49 (243)
478 cd01131 PilT Pilus retraction 96.6 0.0018 4E-08 44.0 2.9 20 20-39 4-23 (198)
479 cd03254 ABCC_Glucan_exporter_l 96.6 0.0022 4.7E-08 44.3 3.3 23 19-41 31-53 (229)
480 cd03253 ABCC_ATM1_transporter 96.6 0.0021 4.6E-08 44.5 3.3 23 19-41 29-51 (236)
481 cd03246 ABCC_Protease_Secretio 96.6 0.0023 5.1E-08 42.4 3.4 23 19-41 30-52 (173)
482 cd03296 ABC_CysA_sulfate_impor 96.6 0.0021 4.7E-08 44.7 3.3 23 19-41 30-52 (239)
483 TIGR03410 urea_trans_UrtE urea 96.6 0.0021 4.6E-08 44.3 3.3 25 17-41 26-50 (230)
484 KOG3347|consensus 96.6 0.0015 3.4E-08 42.7 2.3 24 17-40 7-30 (176)
485 cd03237 ABC_RNaseL_inhibitor_d 96.6 0.0022 4.8E-08 45.1 3.3 23 19-41 27-49 (246)
486 TIGR02868 CydC thiol reductant 96.6 0.002 4.3E-08 49.9 3.3 27 16-42 360-386 (529)
487 PF03308 ArgK: ArgK protein; 96.6 0.0028 6E-08 44.9 3.7 29 15-43 27-55 (266)
488 KOG1490|consensus 96.6 0.0033 7.1E-08 48.4 4.3 56 17-79 168-225 (620)
489 cd00227 CPT Chloramphenicol (C 96.6 0.002 4.3E-08 42.8 2.9 22 20-41 5-26 (175)
490 TIGR03796 NHPM_micro_ABC1 NHPM 96.6 0.002 4.3E-08 51.6 3.3 26 17-42 505-530 (710)
491 PRK13638 cbiO cobalt transport 96.6 0.0022 4.7E-08 45.5 3.2 23 19-41 29-51 (271)
492 PRK11264 putative amino-acid A 96.6 0.0023 5E-08 44.7 3.3 23 19-41 31-53 (250)
493 cd02025 PanK Pantothenate kina 96.6 0.0018 3.8E-08 44.9 2.7 23 20-42 2-24 (220)
494 cd03298 ABC_ThiQ_thiamine_tran 96.6 0.0024 5.2E-08 43.5 3.3 24 18-41 25-48 (211)
495 PRK13539 cytochrome c biogenes 96.6 0.0025 5.3E-08 43.5 3.3 23 19-41 30-52 (207)
496 cd03295 ABC_OpuCA_Osmoprotecti 96.6 0.0024 5.2E-08 44.5 3.3 23 19-41 29-51 (242)
497 PRK10418 nikD nickel transport 96.6 0.0028 6.1E-08 44.5 3.7 24 19-42 31-54 (254)
498 COG1936 Predicted nucleotide k 96.6 0.0022 4.7E-08 42.8 2.9 20 19-38 2-21 (180)
499 PRK14242 phosphate transporter 96.6 0.0022 4.8E-08 44.9 3.1 22 19-40 34-55 (253)
500 PRK14250 phosphate ABC transpo 96.6 0.0024 5.3E-08 44.5 3.3 23 19-41 31-53 (241)
No 1
>KOG0071|consensus
Probab=99.93 E-value=9.2e-26 Score=142.82 Aligned_cols=114 Identities=33% Similarity=0.555 Sum_probs=105.1
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
|++.++.++.++|.+++++|+++|..++||||++..++-+.+.... ||+|++++++..+++.|++||++||+
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~i--------pTvGFnvetVtykN~kfNvwdvGGqd 72 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTI--------PTVGFNVETVTYKNVKFNVWDVGGQD 72 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhcCCCcccc--------cccceeEEEEEeeeeEEeeeeccCch
Confidence 8889999999999999999999999999999999997654444444 99999999999999999999999999
Q ss_pred cccccccc------------------------------------------------cccCccCHHHHHHHHhhhcccccC
Q psy9521 81 ELQSLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLIG 112 (125)
Q Consensus 81 ~~~~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~~ 112 (125)
+.|.+|.. |++++.+..+|++++++- .+.
T Consensus 73 ~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe---~~r 149 (180)
T KOG0071|consen 73 KIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELE---RIR 149 (180)
T ss_pred hhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccc---ccc
Confidence 99999998 999999999999999986 689
Q ss_pred CCCeEEEEeeccC
Q psy9521 113 RRDCMVMPVSALT 125 (125)
Q Consensus 113 ~~~~~i~~~sA~~ 125 (125)
+++|.+++|||.+
T Consensus 150 ~~~W~vqp~~a~~ 162 (180)
T KOG0071|consen 150 DRNWYVQPSCALS 162 (180)
T ss_pred CCccEeecccccc
Confidence 9999999999974
No 2
>KOG0094|consensus
Probab=99.93 E-value=1.5e-25 Score=148.68 Aligned_cols=103 Identities=25% Similarity=0.442 Sum_probs=87.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
.-+.+|++++|+.+||||||+.| +.+.|...|. +|+|+++. ++.+.+ +++++|||+|||+|+++.+.
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~Yq--------ATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslips 90 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 90 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhccccc--------ceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhh
Confidence 34679999999999999999999 8999999998 99999986 455544 89999999999999999888
Q ss_pred ------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeeccC
Q psy9521 89 ------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSALT 125 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~~ 125 (125)
|+++..||++..+|++.. .++-....+.|+.+..++
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv-~~e~gs~~viI~LVGnKt 138 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDV-RRERGSDDVIIFLVGNKT 138 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHH-HhccCCCceEEEEEcccc
Confidence 999999999999999998 444444457777776553
No 3
>KOG0070|consensus
Probab=99.93 E-value=5.8e-26 Score=149.43 Aligned_cols=113 Identities=27% Similarity=0.544 Sum_probs=102.8
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
|+..++.++..++.+++.+|+++|.+++||||++++++ ++.... . ||+|++++++..++++|++||.+||
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-v--------PTiGfnVE~v~ykn~~f~vWDvGGq 71 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-V--------PTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccC-C--------CccccceeEEEEcceEEEEEecCCC
Confidence 88899999999999999999999999999999999965 333322 3 9999999999999999999999999
Q ss_pred ccccccccc------------------------------------------------cccCccCHHHHHHHHhhhccccc
Q psy9521 80 LELQSLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLI 111 (125)
Q Consensus 80 ~~~~~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~ 111 (125)
+++|.+|.. |++++.+..++.+.+.+. ++
T Consensus 72 ~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~---~l 148 (181)
T KOG0070|consen 72 EKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLH---SL 148 (181)
T ss_pred cccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhh---cc
Confidence 999999998 999999999999999987 88
Q ss_pred CCCCeEEEEeeccC
Q psy9521 112 GRRDCMVMPVSALT 125 (125)
Q Consensus 112 ~~~~~~i~~~sA~~ 125 (125)
.+++|++++|||.+
T Consensus 149 ~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 149 RSRNWHIQSTCAIS 162 (181)
T ss_pred CCCCcEEeeccccc
Confidence 88999999999975
No 4
>KOG0084|consensus
Probab=99.91 E-value=8.3e-25 Score=145.20 Aligned_cols=81 Identities=25% Similarity=0.530 Sum_probs=73.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||+|+.| -.+.|++.|. .|+|+++. ++..++ +++++|||+|||||+++...
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~--------sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYI--------STIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhc--------ceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 4599999999999999999 5688888887 99999986 555554 89999999999999998777
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||+++..|+.++
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei 107 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEI 107 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHh
Confidence 999999999999999998
No 5
>KOG0076|consensus
Probab=99.90 E-value=2.3e-24 Score=140.64 Aligned_cols=123 Identities=59% Similarity=1.009 Sum_probs=114.5
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
||++++++|++.|+|.++.++++|+.++|||||+.+.+..|...+.+.++..+.||+|.+..++.+.+..+.+||.+||+
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 99999999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred cccccccc------------------------------------------------cccCccCHHHHHHHHhhhcccccC
Q psy9521 81 ELQSLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLIG 112 (125)
Q Consensus 81 ~~~~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~~ 112 (125)
..+++|.. |..++.+-.+++..+.+. ..++
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~--e~~~ 158 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLA--ELIP 158 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhh--hhcC
Confidence 99999988 888999999998888864 4678
Q ss_pred CCCeEEEEeeccC
Q psy9521 113 RRDCMVMPVSALT 125 (125)
Q Consensus 113 ~~~~~i~~~sA~~ 125 (125)
.+++++++|||++
T Consensus 159 ~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 159 RRDNPFQPVSALT 171 (197)
T ss_pred CccCccccchhhh
Confidence 8999999999974
No 6
>KOG0092|consensus
Probab=99.88 E-value=1.8e-22 Score=133.68 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=75.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..++|++++|+.+||||||+.| ..+.|.+... ||+|.-+. ++..++ ++|.||||+|||+|+++-+.
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e--------~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMY 74 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIE--------PTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMY 74 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccc--------cccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccce
Confidence 4689999999999999999999 8899988665 99998875 455555 89999999999999999888
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||+.++.|+.++
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL 103 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKEL 103 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHH
Confidence 999999999999999998
No 7
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.88 E-value=1.7e-21 Score=129.99 Aligned_cols=110 Identities=35% Similarity=0.549 Sum_probs=93.5
Q ss_pred HHHHHhhhcc-CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 5 VSGFYKYMLR-KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 5 ~~~~~~~~~~-~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
|++++++++. ++++||+++|++|+||||+++++......+.. ||.|++...+..+++++.+||++|++.++
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~--------pT~g~~~~~i~~~~~~~~~~d~gG~~~~~ 72 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETI--------PTIGFNIEEIKYKGYSLTIWDLGGQESFR 72 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEE--------EESSEEEEEEEETTEEEEEEEESSSGGGG
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccC--------cccccccceeeeCcEEEEEEecccccccc
Confidence 5678888876 89999999999999999999997643333344 99999999999999999999999999999
Q ss_pred ccccc------------------------------------------------cccCccCHHHHHHHHhhhcccccC-CC
Q psy9521 84 SLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLIG-RR 114 (125)
Q Consensus 84 ~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~~-~~ 114 (125)
.+|+. |.+++.+.+++...+... .+. ++
T Consensus 73 ~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~---~l~~~~ 149 (175)
T PF00025_consen 73 PLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLE---KLKNKR 149 (175)
T ss_dssp GGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGG---GTTSSS
T ss_pred ccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhh---hcccCC
Confidence 99988 888888888888777765 554 79
Q ss_pred CeEEEEeeccC
Q psy9521 115 DCMVMPVSALT 125 (125)
Q Consensus 115 ~~~i~~~sA~~ 125 (125)
+|.++.|||++
T Consensus 150 ~~~v~~~sa~~ 160 (175)
T PF00025_consen 150 PWSVFSCSAKT 160 (175)
T ss_dssp CEEEEEEBTTT
T ss_pred ceEEEeeeccC
Confidence 99999999975
No 8
>KOG0087|consensus
Probab=99.88 E-value=1.3e-22 Score=135.98 Aligned_cols=101 Identities=20% Similarity=0.460 Sum_probs=87.0
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccc
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQ 83 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~ 83 (125)
|+++|+ ++++|+++||||-|+.| ..++|..+.. +|+|+++. .+.+++ ++.+||||+|||||+
T Consensus 11 ~dylFK-----iVliGDS~VGKsnLlsRftrnEF~~~Sk--------sTIGvef~t~t~~vd~k~vkaqIWDTAGQERyr 77 (222)
T KOG0087|consen 11 YDYLFK-----IVLIGDSAVGKSNLLSRFTRNEFSLESK--------STIGVEFATRTVNVDGKTVKAQIWDTAGQERYR 77 (222)
T ss_pred cceEEE-----EEEeCCCccchhHHHHHhcccccCcccc--------cceeEEEEeeceeecCcEEEEeeecccchhhhc
Confidence 556655 99999999999999999 7899998887 99999986 445554 899999999999999
Q ss_pred ccccc------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeecc
Q psy9521 84 SLWDK------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 84 ~~~~~------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
.+... |++.+.+|+++.+||.++ +...+.++.|+++-.|
T Consensus 78 AitSaYYrgAvGAllVYDITr~~Tfenv~rWL~EL--Rdhad~nivimLvGNK 128 (222)
T KOG0087|consen 78 AITSAYYRGAVGALLVYDITRRQTFENVERWLKEL--RDHADSNIVIMLVGNK 128 (222)
T ss_pred cccchhhcccceeEEEEechhHHHHHHHHHHHHHH--HhcCCCCeEEEEeecc
Confidence 88777 999999999999999998 5666778888877544
No 9
>KOG0080|consensus
Probab=99.87 E-value=2.1e-22 Score=130.30 Aligned_cols=82 Identities=21% Similarity=0.415 Sum_probs=74.1
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|++|||||||+.+ +.+.|.++.+ .|+|+++. .+.+++ +++.+|||+|||+||.+.+.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~--------~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyR 82 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHP--------TTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYR 82 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccCC--------ceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhc
Confidence 47899999999999999999 8889988876 78999986 455554 89999999999999999988
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++.+.+|.++..|+.++
T Consensus 83 gaqGiIlVYDVT~Rdtf~kLd~W~~El 109 (209)
T KOG0080|consen 83 GAQGIILVYDVTSRDTFVKLDIWLKEL 109 (209)
T ss_pred cCceeEEEEEccchhhHHhHHHHHHHH
Confidence 999999999999999998
No 10
>KOG0086|consensus
Probab=99.87 E-value=2.9e-22 Score=128.83 Aligned_cols=105 Identities=23% Similarity=0.482 Sum_probs=89.4
Q ss_pred HHHHHhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCc
Q psy9521 5 VSGFYKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQ 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~ 79 (125)
++.-|+++|+ ++++|+.|.|||+|+++ +.++|..+.. .|+|+++. .+.+. .++++||||+||
T Consensus 2 msEtYDyLfK-----fl~iG~aGtGKSCLLh~Fie~kfkDdss--------HTiGveFgSrIinVGgK~vKLQIWDTAGQ 68 (214)
T KOG0086|consen 2 MSETYDYLFK-----FLVIGSAGTGKSCLLHQFIENKFKDDSS--------HTIGVEFGSRIVNVGGKTVKLQIWDTAGQ 68 (214)
T ss_pred cchhhhhhhe-----eEEeccCCCChhHHHHHHHHhhhccccc--------ceeeeeecceeeeecCcEEEEEEeecccH
Confidence 3567899987 99999999999999999 8999998887 99999986 33443 389999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeecc
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
|+|++..+. |++++.||+++..|+..+ +.+...++.|+.|..+
T Consensus 69 ErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~Da--R~lAs~nIvviL~GnK 123 (214)
T KOG0086|consen 69 ERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDA--RTLASPNIVVILCGNK 123 (214)
T ss_pred HHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHH--HhhCCCcEEEEEeCCh
Confidence 999998776 999999999999999998 5556677777777554
No 11
>KOG0078|consensus
Probab=99.87 E-value=5e-22 Score=133.33 Aligned_cols=97 Identities=21% Similarity=0.428 Sum_probs=81.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||+++.| ..+.|...+. .|+|+++. ++..++ +.+++|||+|||+|+.+.+.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--------sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYy 82 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--------STIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYY 82 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCcc--------ceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHH
Confidence 456799999999999999999 6788888887 99999986 666665 88999999999999998887
Q ss_pred ----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 ----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|+++..||+++..|++.+ .+....+++++.+-
T Consensus 83 rgA~gi~LvyDitne~Sfeni~~W~~~I--~e~a~~~v~~~LvG 124 (207)
T KOG0078|consen 83 RGAMGILLVYDITNEKSFENIRNWIKNI--DEHASDDVVKILVG 124 (207)
T ss_pred hhcCeeEEEEEccchHHHHHHHHHHHHH--HhhCCCCCcEEEee
Confidence 999999999999999998 33333455555543
No 12
>KOG0079|consensus
Probab=99.86 E-value=2.5e-22 Score=128.40 Aligned_cols=85 Identities=29% Similarity=0.581 Sum_probs=75.0
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccc
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQ 83 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~ 83 (125)
|+.+|+ ++++|++|||||+|+.+ -.+.|.++|. .|+|+++. ++++++ ++++|||++|||+|+
T Consensus 5 ~dhLfk-----llIigDsgVGKssLl~rF~ddtFs~sYi--------tTiGvDfkirTv~i~G~~VkLqIwDtAGqErFr 71 (198)
T KOG0079|consen 5 YDHLFK-----LLIIGDSGVGKSSLLLRFADDTFSGSYI--------TTIGVDFKIRTVDINGDRVKLQIWDTAGQERFR 71 (198)
T ss_pred HHHHHH-----HHeecCCcccHHHHHHHHhhcccccceE--------EEeeeeEEEEEeecCCcEEEEEEeecccHHHHH
Confidence 455655 89999999999999999 6788999988 99999985 566665 899999999999999
Q ss_pred ccccc------------cccCccCHHHHHHHHhhh
Q psy9521 84 SLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 84 ~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.+... |+++.+||.++++|++++
T Consensus 72 titstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei 106 (198)
T KOG0079|consen 72 TITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEI 106 (198)
T ss_pred HHHHHHccCCceEEEEEECcchhhhHhHHHHHHHH
Confidence 87655 999999999999999998
No 13
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.86 E-value=2.1e-21 Score=130.18 Aligned_cols=97 Identities=28% Similarity=0.521 Sum_probs=81.7
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
|+.+++.+++..+.++++||+++|+++||||||++++ .+.+. ++. ||++.++..++.+++.+++||++|+
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~--------pt~g~~~~~~~~~~~~~~i~D~~Gq 71 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTI--------PTIGFNVETVEYKNISFTVWDVGGQ 71 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCc-ccc--------CCcceeEEEEEECCEEEEEEECCCC
Confidence 7888888888778888899999999999999999995 45554 344 9999988878888899999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++++.+|.. |.+++.+++++..++..+
T Consensus 72 ~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~ 110 (181)
T PLN00223 72 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRM 110 (181)
T ss_pred HHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999988766 888888898887766554
No 14
>KOG0098|consensus
Probab=99.86 E-value=1.4e-21 Score=129.05 Aligned_cols=98 Identities=20% Similarity=0.395 Sum_probs=83.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+|++++|+.|||||+|+.| ..++|.+.+. .|+|+++. .++++ .+++++|||+|||.++++...
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd--------~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syY 76 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHD--------LTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYY 76 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCcccccc--------ceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHh
Confidence 357799999999999999999 7899999888 99999985 45554 499999999999999998877
Q ss_pred ----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 89 ----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++.||..+..||.++ +.....+..|+.|-.
T Consensus 77 r~a~GalLVydit~r~sF~hL~~wL~D~--rq~~~~NmvImLiGN 119 (216)
T KOG0098|consen 77 RGAAGALLVYDITRRESFNHLTSWLEDA--RQHSNENMVIMLIGN 119 (216)
T ss_pred ccCcceEEEEEccchhhHHHHHHHHHHH--HHhcCCCcEEEEEcc
Confidence 999999999999999998 444456777777654
No 15
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.85 E-value=4e-21 Score=129.00 Aligned_cols=98 Identities=24% Similarity=0.342 Sum_probs=79.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
++.++||+++|++|||||||+.+ +.+.|.+++. ||++..+. .+..++ +.+++|||+|+++|+.+++.
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~--------pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~ 73 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS 73 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHhCCCCCccC--------CceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhh
Confidence 46789999999999999999999 7888888887 99987764 445554 88999999999999888765
Q ss_pred -----------cccCccCHHHH-HHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----------DIRDCMGVREV-KPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----------Di~~~~s~~~i-~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++ ..|++++ .... .+.+++.+.
T Consensus 74 ~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i-~~~~--~~~piilVg 116 (182)
T cd04172 74 YPDSDAVLICFDISRPETLDSVLKKWKGEI-QEFC--PNTKMLLVG 116 (182)
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHH-HHHC--CCCCEEEEe
Confidence 99999999998 7899988 2222 345555544
No 16
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=4.2e-21 Score=128.78 Aligned_cols=97 Identities=29% Similarity=0.541 Sum_probs=82.3
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
|+.++..+++.++.++++||+++|++|||||||++++ .+.+.. +. ||++.++..++..++.+++||++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~--------~T~~~~~~~~~~~~~~~~l~D~~G~ 71 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TI--------PTIGFNVETVEYKNLKFTMWDVGGQ 71 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cC--------CccccceEEEEECCEEEEEEECCCC
Confidence 7777888899888888999999999999999999995 566653 44 8999888877788899999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++++.+|.. |.+++.+|+++..++..+
T Consensus 72 ~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~ 110 (182)
T PTZ00133 72 DKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERM 110 (182)
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999887666 888888998888766654
No 17
>KOG0073|consensus
Probab=99.85 E-value=7.7e-21 Score=123.11 Aligned_cols=110 Identities=29% Similarity=0.526 Sum_probs=92.5
Q ss_pred HHHHHhhhc-cCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 5 VSGFYKYML-RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 5 ~~~~~~~~~-~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
+.++.+... +.++++|+++|+.|+|||++++++.++-... +.||.|+++.++..+++++++||++||...+
T Consensus 3 ~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~--------i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr 74 (185)
T KOG0073|consen 3 LLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDT--------ISPTLGFQIKTLEYKGYTLNIWDVGGQKTLR 74 (185)
T ss_pred HHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccc--------cCCccceeeEEEEecceEEEEEEcCCcchhH
Confidence 345556654 5689999999999999999999987654444 4499999999999999999999999999999
Q ss_pred ccccc------------------------------------------------cccCccCHHHHHHHHhhhccccc-CCC
Q psy9521 84 SLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLI-GRR 114 (125)
Q Consensus 84 ~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~-~~~ 114 (125)
.+|++ |++.+.+.++|...+++- ++ +.+
T Consensus 75 ~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~---~l~ks~ 151 (185)
T KOG0073|consen 75 SYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLE---ELAKSH 151 (185)
T ss_pred HHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHH---Hhcccc
Confidence 99999 777777888887777764 55 889
Q ss_pred CeEEEEeeccC
Q psy9521 115 DCMVMPVSALT 125 (125)
Q Consensus 115 ~~~i~~~sA~~ 125 (125)
.|+++.|||.+
T Consensus 152 ~~~l~~cs~~t 162 (185)
T KOG0073|consen 152 HWRLVKCSAVT 162 (185)
T ss_pred CceEEEEeccc
Confidence 99999999975
No 18
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.84 E-value=1.3e-20 Score=125.93 Aligned_cols=94 Identities=22% Similarity=0.311 Sum_probs=76.6
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+.+ +.+.|..++. ||++..+. .+..++ +++.+||++|+++|+.+++.
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~--------~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a 73 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYI--------PTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGA 73 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCC--------CcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCC
Confidence 6899999999999999999 7889988887 99987764 344444 88999999999999988766
Q ss_pred -------cccCccCHHHH-HHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -------DIRDCMGVREV-KPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -------Di~~~~s~~~i-~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++ +.|+.++ ... ..+++++.+.
T Consensus 74 ~~~ilvyd~~~~~Sf~~~~~~w~~~i--~~~-~~~~piilvg 112 (176)
T cd04133 74 DVFVLAFSLISRASYENVLKKWVPEL--RHY-APNVPIVLVG 112 (176)
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHHHH--HHh-CCCCCEEEEE
Confidence 99999999999 6899988 222 2345665554
No 19
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.84 E-value=1.1e-20 Score=127.55 Aligned_cols=96 Identities=26% Similarity=0.347 Sum_probs=77.0
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
.+||+++|++|||||||+.+ +.+.|.+++. ||++.++. .+..++ +.+++||++|+++|+.+++.
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~ 74 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYI--------PTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQ 74 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCC--------CceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccC
Confidence 58999999999999999999 7888888887 99987765 344444 88999999999999988866
Q ss_pred --------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEeec
Q psy9521 89 --------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 --------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++.||+++. .|+.++ .... .++|++.+..
T Consensus 75 a~~~ilvydit~~~Sf~~~~~~w~~~i-~~~~--~~~piilvgN 115 (191)
T cd01875 75 TNVFIICFSIASPSSYENVRHKWHPEV-CHHC--PNVPILLVGT 115 (191)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH-HhhC--CCCCEEEEEe
Confidence 999999999997 588876 2222 3456555543
No 20
>KOG0095|consensus
Probab=99.84 E-value=4e-21 Score=123.21 Aligned_cols=94 Identities=19% Similarity=0.371 Sum_probs=76.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|..|||||+|+.| .++-|++-.. .|+|+++- ++++.+ +++++|||+|||+|+++...
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqg--------atigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrs 79 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQG--------ATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRS 79 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCC--------ceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhh
Confidence 3499999999999999999 7788887765 89998874 566654 99999999999999998766
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|+++..||+-+.+|+.++ ....++.+--+.+
T Consensus 80 ahalilvydiscqpsfdclpewlrei--e~yan~kvlkilv 118 (213)
T KOG0095|consen 80 AHALILVYDISCQPSFDCLPEWLREI--EQYANNKVLKILV 118 (213)
T ss_pred cceEEEEEecccCcchhhhHHHHHHH--HHHhhcceEEEee
Confidence 999999999999999998 3333444444433
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.84 E-value=2.6e-20 Score=124.58 Aligned_cols=95 Identities=23% Similarity=0.324 Sum_probs=75.5
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ +.+.|+.++. ||++.++. .+..++ +.+++||++|+++|+.+++.
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~ 72 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYV--------PTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPD 72 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcC--------CceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCC
Confidence 47899999999999999999 7788888887 99987764 444544 88999999999999877665
Q ss_pred --------cccCccCHHHH-HHHHhhhcccccCCCCeEEEEee
Q psy9521 89 --------DIRDCMGVREV-KPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 --------Di~~~~s~~~i-~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++ ..|++++ .... ...+++.+.
T Consensus 73 a~~~ilvfdit~~~Sf~~~~~~w~~~i-~~~~--~~~~iilVg 112 (178)
T cd04131 73 SDAVLICFDISRPETLDSVLKKWRGEI-QEFC--PNTKVLLVG 112 (178)
T ss_pred CCEEEEEEECCChhhHHHHHHHHHHHH-HHHC--CCCCEEEEE
Confidence 99999999996 7899987 2222 344555443
No 22
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.83 E-value=1.8e-20 Score=127.78 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=70.9
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
.|+++|+.|||||||++| +.+.|..++. +|++.++. .+..++ +.+++||++|+++|+.+|..
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~--------~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~a 73 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK--------SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 73 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC--------CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCC
Confidence 599999999999999999 7788888887 99887764 566665 88999999999999998876
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||++++.|++.+
T Consensus 74 d~iIlVfDvtd~~Sf~~l~~w~~~i 98 (202)
T cd04120 74 KGIILVYDITKKETFDDLPKWMKMI 98 (202)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999877
No 23
>KOG0394|consensus
Probab=99.83 E-value=9.6e-21 Score=124.82 Aligned_cols=86 Identities=27% Similarity=0.480 Sum_probs=77.2
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~ 87 (125)
.++.-+||+++|++|||||||+++ .+++|..+|. .|+|.++. .+.+++ +.++||||+|||+|+++..
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qyk--------aTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~ 76 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYK--------ATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV 76 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhc--------cccchhheeeEEEEcCeEEEEEEEecccHHHhhhccc
Confidence 356679999999999999999999 8999999998 99999985 555555 8899999999999999876
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |++++.||+.+..|-+++
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EF 107 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEF 107 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHH
Confidence 6 999999999999999987
No 24
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.83 E-value=4.6e-20 Score=124.55 Aligned_cols=83 Identities=20% Similarity=0.363 Sum_probs=71.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|+.|||||||+.+ ..+.|..++. ||++.++. .+..++ +.+++||++|+++|+.++..
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~--------~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~ 76 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYG--------YNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYS 76 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHh
Confidence 468999999999999999999 6677777666 78777764 455555 88999999999999988766
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||++++.|++++
T Consensus 77 ~~ad~illVfD~t~~~Sf~~~~~w~~~i 104 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEI 104 (189)
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999998
No 25
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.82 E-value=8e-20 Score=121.83 Aligned_cols=81 Identities=25% Similarity=0.283 Sum_probs=70.3
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+++ +.+.|..++. ||++.++. .+..++ +++++||++|+++|..++..
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~--------pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a 73 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYV--------PTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQT 73 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccC
Confidence 6899999999999999999 7788888877 99988775 555555 88999999999999887765
Q ss_pred -------cccCccCHHHHH-HHHhhh
Q psy9521 89 -------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.||+++. .|+.++
T Consensus 74 ~~~ilv~d~~~~~s~~~~~~~w~~~i 99 (175)
T cd01874 74 DVFLVCFSVVSPSSFENVKEKWVPEI 99 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999997 598887
No 26
>KOG0091|consensus
Probab=99.82 E-value=1.2e-20 Score=122.41 Aligned_cols=82 Identities=24% Similarity=0.482 Sum_probs=72.1
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC-C--EEEEEEECCCcccccccccc--
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN-T--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
+++++++|++-||||+|+++ ..++|.+-.. ||+|+++. -+++. + +++++|||+|||+|+++...
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd--------ptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyy 79 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD--------PTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYY 79 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCC--------CccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHh
Confidence 67899999999999999999 6788887766 99999974 23443 2 89999999999999998777
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++|+.|||+++.|+.+.
T Consensus 80 rnsvgvllvyditnr~sfehv~~w~~ea 107 (213)
T KOG0091|consen 80 RNSVGVLLVYDITNRESFEHVENWVKEA 107 (213)
T ss_pred hcccceEEEEeccchhhHHHHHHHHHHH
Confidence 999999999999999997
No 27
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=8.9e-20 Score=120.84 Aligned_cols=86 Identities=33% Similarity=0.578 Sum_probs=70.5
Q ss_pred hccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--
Q psy9521 12 MLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
++.++++||+++|++|||||||++++ .+.+. .+. ||++.++..+..+++.+++||++|+++++.+|+.
T Consensus 4 ~~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~--------~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 74 (168)
T cd04149 4 LFGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTI--------PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 74 (168)
T ss_pred ccCCCccEEEEECcCCCCHHHHHHHHccCCCc-ccc--------CCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHh
Confidence 35567899999999999999999995 45543 334 8999888777777899999999999999887765
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|+.++
T Consensus 75 ~~a~~ii~v~D~t~~~s~~~~~~~~~~~ 102 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRI 102 (168)
T ss_pred ccCCEEEEEEeCCchhhHHHHHHHHHHH
Confidence 888888998888776544
No 28
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.82 E-value=6.4e-20 Score=125.02 Aligned_cols=81 Identities=20% Similarity=0.321 Sum_probs=69.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEe-------CCEEEEEEECCCccccccccc
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDI-------NTVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~-------~~~~~~i~D~~G~~~~~~~~~ 87 (125)
+||+++|++|||||||+++ +.+.|.+++. ||++.++. .+.. ..+.+++||++|+++|+.+++
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~--------~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPS--------WTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------cceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHH
Confidence 5899999999999999999 7788887776 99987654 3333 237899999999999988776
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |++++.||+++..|++++
T Consensus 73 ~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei 103 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEA 103 (202)
T ss_pred HHhCcCCEEEEEEECcChHHHHHHHHHHHHH
Confidence 5 999999999999999998
No 29
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1e-19 Score=126.35 Aligned_cols=83 Identities=24% Similarity=0.289 Sum_probs=72.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
..+||+++|++|||||||+.+ +.+.|..+|. ||++.++. .+..++ +.+.+|||+|+++|+.+++.
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~--------pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~ 83 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--------PTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS 83 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcC--------CceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC
Confidence 578999999999999999999 7788888887 99987775 445554 88999999999999887765
Q ss_pred ---------cccCccCHHHH-HHHHhhh
Q psy9521 89 ---------DIRDCMGVREV-KPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i-~~~l~~~ 106 (125)
|++++.||+++ ..|++++
T Consensus 84 ~ad~vIlVyDit~~~Sf~~~~~~w~~~i 111 (232)
T cd04174 84 DSDAVLLCFDISRPETVDSALKKWKAEI 111 (232)
T ss_pred CCcEEEEEEECCChHHHHHHHHHHHHHH
Confidence 99999999985 7899988
No 30
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.81 E-value=1.5e-19 Score=120.13 Aligned_cols=82 Identities=21% Similarity=0.309 Sum_probs=70.9
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
.+||+++|++|||||||+++ +.+.|+.++. ||++..+. .+..++ +.+++||++|+++++.+|..
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~ 73 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHD--------PTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRC 73 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcC--------CcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhc
Confidence 57999999999999999999 7788887777 89887665 455555 78999999999999888876
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+.+..|+..+
T Consensus 74 ~d~~ilv~d~~~~~Sf~~~~~~~~~i 99 (172)
T cd04141 74 GEGFIICYSVTDRHSFQEASEFKKLI 99 (172)
T ss_pred CCEEEEEEECCchhHHHHHHHHHHHH
Confidence 999999999999887766
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.81 E-value=1.1e-19 Score=125.52 Aligned_cols=96 Identities=23% Similarity=0.294 Sum_probs=76.1
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+.+ +.+.|+++|. ||++.++. .+..++ +.+.+||++|+++|..+++.
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~--------pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~ 72 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYV--------PTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPD 72 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccC--------CccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccC
Confidence 37999999999999999999 7788888887 99988775 455554 88999999999999887776
Q ss_pred --------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEeec
Q psy9521 89 --------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 --------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++.||+++. .|..++ .......+++.+..
T Consensus 73 ~d~illvfdis~~~Sf~~i~~~w~~~~---~~~~~~~piiLVgn 113 (222)
T cd04173 73 SDAVLICFDISRPETLDSVLKKWQGET---QEFCPNAKVVLVGC 113 (222)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH---HhhCCCCCEEEEEE
Confidence 999999999996 577766 22223455555543
No 32
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.81 E-value=1.4e-19 Score=121.37 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=71.6
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.|.++|. ||+|.++. .+..++ +.+.+||++|+++|+.+++.
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~--------~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~ 72 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYI--------QTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCND 72 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcC
Confidence 5899999999999999999 7888888887 99998874 566665 78999999999999887766
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++++
T Consensus 73 a~~iilv~D~t~~~s~~~i~~~~~~~ 98 (182)
T cd04128 73 AVAILFMFDLTRKSTLNSIKEWYRQA 98 (182)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.81 E-value=2e-19 Score=123.95 Aligned_cols=84 Identities=27% Similarity=0.527 Sum_probs=73.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEE--eC--CEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQID--IN--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.|..++. ||++.++.... .+ .+.+.+||++|+++|+.++..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~--------~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 82 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY 82 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccC--------CccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH
Confidence 5789999999999999999999 7888888877 99998876433 33 389999999999999888764
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++++
T Consensus 83 ~~~~~~~ilvfD~~~~~s~~~i~~w~~~i 111 (219)
T PLN03071 83 YIHGQCAIIMFDVTARLTYKNVPTWHRDL 111 (219)
T ss_pred cccccEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 34
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.80 E-value=3e-19 Score=117.56 Aligned_cols=82 Identities=24% Similarity=0.473 Sum_probs=69.6
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|++|||||||+++ +.++|..+++ +|++.++. .+..++ +++.+||++|+++++.++..
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 73 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--------HTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYR 73 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------cccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc
Confidence 37899999999999999999 6777877776 88887764 344544 78999999999998877655
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++.+
T Consensus 74 ~~~~~ilv~d~~~~~s~~~~~~~~~~~ 100 (166)
T cd04122 74 GAAGALMVYDITRRSTYNHLSSWLTDA 100 (166)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 35
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.80 E-value=3e-19 Score=118.93 Aligned_cols=89 Identities=27% Similarity=0.540 Sum_probs=72.7
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccccc
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 87 (125)
++.+..++++||+++|++|||||||++++ .+.+. .+. ||++.++..+..+++.+.+||++|+++++.+|.
T Consensus 5 ~~~~~~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~--------~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~ 75 (175)
T smart00177 5 FSKLFGNKEMRILMVGLDAAGKTTILYKLKLGESV-TTI--------PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWR 75 (175)
T ss_pred hhhhcCCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcC--------CccccceEEEEECCEEEEEEECCCChhhHHHHH
Confidence 34344456899999999999999999995 56653 344 899988877777889999999999999988776
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |.+++.+++++..|+..+
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~ 106 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRM 106 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 6 999999999888777654
No 36
>PTZ00369 Ras-like protein; Provisional
Probab=99.80 E-value=5.1e-19 Score=119.09 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=71.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..++||+++|++|||||||+++ +.+.|..++. ||++..+. .+..++ +.+++||++|++++..+|..
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~ 74 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYD--------PTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYM 74 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcC--------CchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHh
Confidence 3578999999999999999999 6777777776 88887764 444544 77999999999999988776
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 75 ~~~d~iilv~D~s~~~s~~~~~~~~~~i 102 (189)
T PTZ00369 75 RTGQGFLCVYSITSRSSFEEIASFREQI 102 (189)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.79 E-value=6.2e-19 Score=115.82 Aligned_cols=95 Identities=21% Similarity=0.395 Sum_probs=74.5
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.|.+++. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 72 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHI--------STIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRR 72 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcC
Confidence 4799999999999999999 6777877776 99987764 555555 78999999999998877654
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++..|++.+ ........+++.+.
T Consensus 73 ~~~~i~v~d~~~~~sf~~~~~~~~~~--~~~~~~~~~iilvg 112 (161)
T cd04117 73 AQGIFLVYDISSERSYQHIMKWVSDV--DEYAPEGVQKILIG 112 (161)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHH--HHhCCCCCeEEEEE
Confidence 999999999999999987 11222345555443
No 38
>KOG0393|consensus
Probab=99.79 E-value=8.6e-20 Score=122.67 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=82.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC-C--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN-T--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++++|||+|+.. ..+.|+++|. ||+-.+|. .+.++ + +.+.+|||+|||.|..+|+.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv--------PTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY 74 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYV--------PTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSY 74 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCccccc--------CeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCC
Confidence 468999999999999999999 8899999998 99987775 56663 4 88999999999999998876
Q ss_pred ----------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEe
Q psy9521 89 ----------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 ----------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~ 121 (125)
++.++.||+++. +|+.++ .+..+..++.++++
T Consensus 75 ~~tdvfl~cfsv~~p~S~~nv~~kW~pEi-~~~cp~vpiiLVGt 117 (198)
T KOG0393|consen 75 PQTDVFLLCFSVVSPESFENVKSKWIPEI-KHHCPNVPIILVGT 117 (198)
T ss_pred CCCCEEEEEEEcCChhhHHHHHhhhhHHH-HhhCCCCCEEEEee
Confidence 899999999998 699999 55555566666554
No 39
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.79 E-value=7.1e-19 Score=114.95 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=68.2
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ +.+.|...+. ||++..+. .+..++ +.+++||++|+++++.++..
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYD--------PTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKN 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhc
Confidence 37999999999999999999 7777777766 77764443 455555 67899999999999888765
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|++++
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i 98 (163)
T cd04136 73 GQGFVLVYSITSQSSFNDLQDLREQI 98 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 40
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.79 E-value=7.6e-19 Score=115.28 Aligned_cols=82 Identities=17% Similarity=0.338 Sum_probs=69.1
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ +.+.|...+. ||++..+. .+..++ +.+++||++|+++++.++..
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--------PTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKN 72 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhh
Confidence 47899999999999999999 7777777776 88876654 455554 77889999999999988776
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~~~~i 98 (164)
T cd04175 73 GQGFVLVYSITAQSTFNDLQDLREQI 98 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998887
No 41
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.79 E-value=7.2e-19 Score=119.40 Aligned_cols=81 Identities=26% Similarity=0.452 Sum_probs=69.4
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC---CEEEEEEECCCcccccccccc---
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN---TVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+||+++|++|||||||+++ +.+.|...+. ||++.++. .+..+ .+.+.+||++|+++++.++..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~--------~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 72 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYK--------ATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYR 72 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhC
Confidence 5899999999999999999 7777777776 99987764 45554 378999999999999888765
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 73 ~a~~~ilv~D~t~~~s~~~~~~~~~~i 99 (201)
T cd04107 73 GAVGAIIVFDVTRPSTFEAVLKWKADL 99 (201)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 42
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.79 E-value=8e-19 Score=116.44 Aligned_cols=80 Identities=26% Similarity=0.523 Sum_probs=69.5
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
||+++|++|||||||+++ +.+.|.++|. ||++.++. .+..++ +.+++||++|+++|..++..
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a 73 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYK--------ATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGA 73 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCC
Confidence 799999999999999999 7788888887 99988764 444454 78999999999999877666
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.||+.+..|++++
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~~~~~ 98 (170)
T cd04108 74 QAIIIVFDLTDVASLEHTRQWLEDA 98 (170)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999976
No 43
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.78 E-value=9.1e-19 Score=114.53 Aligned_cols=94 Identities=26% Similarity=0.465 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
||+++|+++||||||+++ ..+.|++++. ||++.+.. .+..++ +.+++||++|++++..++..
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 72 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYI--------PTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNS 72 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSE--------TTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTE
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccc--------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999 7788888887 99887765 444544 78999999999998776555
Q ss_pred -------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++..|++.+ ......+.+++.+.
T Consensus 73 ~~~ii~fd~~~~~S~~~~~~~~~~i--~~~~~~~~~iivvg 111 (162)
T PF00071_consen 73 DAIIIVFDVTDEESFENLKKWLEEI--QKYKPEDIPIIVVG 111 (162)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHH--HHHSTTTSEEEEEE
T ss_pred ccccccccccccccccccccccccc--cccccccccceeee
Confidence 999999999999999998 22333445655553
No 44
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.78 E-value=1.2e-18 Score=113.42 Aligned_cols=82 Identities=20% Similarity=0.351 Sum_probs=67.7
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ +.+.|..++. ||.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ 72 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 72 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcC--------CcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhc
Confidence 47899999999999999999 6677777776 78776553 444554 67889999999999887775
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 73 ~~~~i~v~~~~~~~s~~~~~~~~~~i 98 (162)
T cd04138 73 GEGFLCVFAINSRKSFEDIHTYREQI 98 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 899999999999888876
No 45
>PLN00023 GTP-binding protein; Provisional
Probab=99.78 E-value=1e-18 Score=125.67 Aligned_cols=85 Identities=16% Similarity=0.280 Sum_probs=73.0
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC---------------CEEEEEEE
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN---------------TVRLNFWD 75 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---------------~~~~~i~D 75 (125)
...++||+++|+.|||||||+++ +.+.|..++. ||+|.++. .+..+ .+.++|||
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~--------pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWD 89 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPP--------QTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWD 89 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccC--------CceeeeEEEEEEEECCcccccccccccCCceEEEEEEE
Confidence 34679999999999999999999 6777877776 99998763 34432 37899999
Q ss_pred CCCcccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 76 LGGQLELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 76 ~~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++|+++|+.+++. |++++.||+++..|++++
T Consensus 90 TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI 132 (334)
T PLN00023 90 VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEV 132 (334)
T ss_pred CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 9999999998877 999999999999999998
No 46
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.78 E-value=1.5e-18 Score=113.63 Aligned_cols=82 Identities=21% Similarity=0.392 Sum_probs=68.0
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee-EEEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI-GQIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ +.+.+.+++. ||++..+ ..+..++ +.+++||++|++++..++..
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYD--------PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhh
Confidence 47999999999999999999 7788877766 7775333 2455554 67899999999999988877
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 73 ad~~i~v~d~~~~~s~~~~~~~~~~~ 98 (163)
T cd04176 73 GQGFIVVYSLVNQQTFQDIKPMRDQI 98 (163)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 47
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=2.2e-18 Score=114.32 Aligned_cols=86 Identities=35% Similarity=0.609 Sum_probs=69.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
.+.+++||+++|++|||||||++++.+.+...+. ||+++.+..+..+++.+.+||++|++.++.+|..
T Consensus 10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~--------~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 81 (173)
T cd04154 10 LKEREMRILILGLDNAGKTTILKKLLGEDIDTIS--------PTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFES 81 (173)
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHccCCCCCcC--------CccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 4457899999999999999999996554444444 8888777777778899999999999988777655
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+++..|+..+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~ 107 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKEL 107 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 888888888887666554
No 48
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.78 E-value=1.2e-18 Score=114.03 Aligned_cols=97 Identities=22% Similarity=0.471 Sum_probs=75.5
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.++|..++. ||++.++. .+..++ +.+++||++|++++..+++.
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--------PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKD 72 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhcc
Confidence 5899999999999999999 6777777776 99988864 444444 88999999999988877665
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCC----CCeEEEEeec
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGR----RDCMVMPVSA 123 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~----~~~~i~~~sA 123 (125)
|.+++.+|+++..|+.++ ...... .+.+++.+..
T Consensus 73 ~d~~ilv~D~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~piilv~n 118 (168)
T cd04119 73 TQGVLLVYDVTDRQSFEALDSWLKEM-KQEGGPHGNMENIVVVVCAN 118 (168)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHH-HHhccccccCCCceEEEEEE
Confidence 999999999999999987 222221 3456655543
No 49
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.78 E-value=1.8e-18 Score=115.23 Aligned_cols=94 Identities=22% Similarity=0.332 Sum_probs=74.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+.+ +.+.|.+++. ||++..+. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 73 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI--------PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQT 73 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCC--------CcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCC
Confidence 6899999999999999999 7788888887 88875553 444554 78999999999999887765
Q ss_pred -------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEee
Q psy9521 89 -------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++. .|+..+ .. ...+.|++.+.
T Consensus 74 d~~ilv~d~~~~~sf~~~~~~~~~~~-~~--~~~~~piilvg 112 (174)
T cd01871 74 DVFLICFSLVSPASFENVRAKWYPEV-RH--HCPNTPIILVG 112 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH-HH--hCCCCCEEEEe
Confidence 999999999996 588876 22 22345655553
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.78 E-value=1.5e-18 Score=114.25 Aligned_cols=81 Identities=30% Similarity=0.492 Sum_probs=68.5
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.++|...+. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~ 73 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--------STVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRG 73 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccC
Confidence 6899999999999999999 6777777776 88887664 444443 78999999999998887665
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|++.+
T Consensus 74 ~~~~l~v~d~~~~~s~~~~~~~~~~i 99 (165)
T cd01865 74 AMGFILMYDITNEESFNAVQDWSTQI 99 (165)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 51
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.78 E-value=1.4e-18 Score=115.54 Aligned_cols=83 Identities=28% Similarity=0.460 Sum_probs=69.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC------------CEEEEEEECCCcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN------------TVRLNFWDLGGQL 80 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~~ 80 (125)
..+||+++|++|||||||+++ ..+.|.+++. ||++.++. .+... .+.+.+||++|++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~ 74 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFI--------TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE 74 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCC--------CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH
Confidence 468999999999999999999 6778877776 89987764 23322 3789999999999
Q ss_pred cccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 81 ELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 81 ~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+++.++.. |++++.||++++.|+.++
T Consensus 75 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i 112 (180)
T cd04127 75 RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQL 112 (180)
T ss_pred HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 98877665 999999999999999887
No 52
>KOG0093|consensus
Probab=99.78 E-value=1.2e-18 Score=111.51 Aligned_cols=96 Identities=24% Similarity=0.412 Sum_probs=79.7
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEe--CCEEEEEEECCCcccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDI--NTVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
|++++|.+.||||||+.| +...|...+. .|+|+++. ++-. +.+++++|||+|||+|+.+...
T Consensus 23 KlliiGnssvGKTSfl~ry~ddSFt~afv--------sTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 23 KLLIIGNSSVGKTSFLFRYADDSFTSAFV--------STVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred eEEEEccCCccchhhhHHhhcccccccee--------eeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 699999999999999999 8888888777 99999986 3222 2389999999999999998776
Q ss_pred -------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeecc
Q psy9521 89 -------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
|++|..||..+++|..++ +...--+.+++.++.+
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqI--ktysw~naqvilvgnK 135 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQI--KTYSWDNAQVILVGNK 135 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHh--eeeeccCceEEEEecc
Confidence 999999999999999998 3334556666666543
No 53
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=3.9e-18 Score=114.43 Aligned_cols=93 Identities=28% Similarity=0.399 Sum_probs=68.0
Q ss_pred hHHHHHhhh-ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 4 LVSGFYKYM-LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 4 ~~~~~~~~~-~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
-+..+++.+ ..++++||+++|++|||||||++++.+.....+. ||.+.....+..+++++.+||++|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~D~~G~~~~ 74 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQ--------PTQHPTSEELAIGNIKFTTFDLGGHQQA 74 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccC--------CccccceEEEEECCEEEEEEECCCCHHH
Confidence 456778844 2378999999999999999999996543222333 7777777777778899999999999988
Q ss_pred cccccc------------cccCccCHHHHHHHHh
Q psy9521 83 QSLWDK------------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 83 ~~~~~~------------Di~~~~s~~~i~~~l~ 104 (125)
+.+|.. |.+++.++++...++.
T Consensus 75 ~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~ 108 (184)
T smart00178 75 RRLWKDYFPEVNGIVYLVDAYDKERFAESKRELD 108 (184)
T ss_pred HHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHH
Confidence 877666 5555555555544433
No 54
>KOG0075|consensus
Probab=99.77 E-value=4.3e-19 Score=113.41 Aligned_cols=106 Identities=25% Similarity=0.515 Sum_probs=94.7
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccccc
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 87 (125)
+..+|.+.++.+.++|.+++|||||++. ..+.+.+... ||+|++...++..++.+.+||++||.+++++|.
T Consensus 12 i~~~f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmi--------ptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWe 83 (186)
T KOG0075|consen 12 ICNSFWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMI--------PTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWE 83 (186)
T ss_pred HHHHHHHheeeEEEEeeccCCcceEEEEEeeccchhhhc--------ccccceeEEeccCceEEEEEecCCCccHHHHHH
Confidence 4455778999999999999999999999 6778888777 999999999988889999999999999999998
Q ss_pred c------------------------------------------------cccCccCHHHHHHHHhhhcccccCCCCeEEE
Q psy9521 88 K------------------------------------------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119 (125)
Q Consensus 88 ~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~ 119 (125)
. |.+++.+-+++-..+.+. .+.+|.+.++
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~---sitdREvcC~ 160 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLS---SITDREVCCF 160 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcc---ccccceEEEE
Confidence 7 888888888888888876 8999999999
Q ss_pred EeeccC
Q psy9521 120 PVSALT 125 (125)
Q Consensus 120 ~~sA~~ 125 (125)
.+||+.
T Consensus 161 siScke 166 (186)
T KOG0075|consen 161 SISCKE 166 (186)
T ss_pred EEEEcC
Confidence 999873
No 55
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.77 E-value=2e-18 Score=114.02 Aligned_cols=81 Identities=28% Similarity=0.562 Sum_probs=68.8
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe--C--CEEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI--N--TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+..++. ||++.++..+.. + .+.+.+||++|++++..++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV--------ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIG 72 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcC
Confidence 4899999999999999999 6777777776 999888764433 2 388999999999998877654
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||++++.|+..+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i 98 (166)
T cd00877 73 GQCAIIMFDVTSRVTYKNVPNWHRDL 98 (166)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999988
No 56
>KOG0081|consensus
Probab=99.77 E-value=2.4e-20 Score=120.65 Aligned_cols=90 Identities=28% Similarity=0.548 Sum_probs=75.6
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEE--EEeC-----------CEEEEEE
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ--IDIN-----------TVRLNFW 74 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~-----------~~~~~i~ 74 (125)
|+++.+ .+.+|++|||||+++++ ..++|..+.. .|+|+++.+ +..+ .+.+++|
T Consensus 6 ydylik-----fLaLGDSGVGKTs~Ly~YTD~~F~~qFI--------sTVGIDFreKrvvY~s~gp~g~gr~~rihLQlW 72 (219)
T KOG0081|consen 6 YDYLIK-----FLALGDSGVGKTSFLYQYTDGKFNTQFI--------STVGIDFREKRVVYNSSGPGGGGRGQRIHLQLW 72 (219)
T ss_pred HHHHHH-----HHhhccCCCCceEEEEEecCCcccceeE--------EEeecccccceEEEeccCCCCCCcceEEEEeee
Confidence 555544 89999999999999999 8899998887 999999862 2221 1789999
Q ss_pred ECCCcccccccccc------------cccCccCHHHHHHHHhhhccccc
Q psy9521 75 DLGGQLELQSLWDK------------DIRDCMGVREVKPIFNKNSAHLI 111 (125)
Q Consensus 75 D~~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~~~~~~ 111 (125)
||+|||+|+++... |+++..||-+++.|+.++..|..
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAY 121 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAY 121 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhc
Confidence 99999999998776 99999999999999999854444
No 57
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.77 E-value=3.3e-18 Score=113.76 Aligned_cols=94 Identities=34% Similarity=0.552 Sum_probs=76.0
Q ss_pred hHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
++.++++.++.++.+||+++|++|||||||++++ .+.+.. +. ||++.++..+..+++.+.+||++|++++
T Consensus 2 ~~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~l~D~~G~~~~ 72 (174)
T cd04153 2 LFSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TS--------PTIGSNVEEIVYKNIRFLMWDIGGQESL 72 (174)
T ss_pred chhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCCC-cC--------CccccceEEEEECCeEEEEEECCCCHHH
Confidence 4567888887777899999999999999999995 555543 33 8888888878888899999999999988
Q ss_pred cccccc------------cccCccCHHHHHHHHhhh
Q psy9521 83 QSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 83 ~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+..|.. |.++..+|.+++.++..+
T Consensus 73 ~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~ 108 (174)
T cd04153 73 RSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKM 108 (174)
T ss_pred HHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 777665 888888887776655543
No 58
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.77 E-value=2.7e-18 Score=112.81 Aligned_cols=81 Identities=14% Similarity=0.115 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCC--EEEEEEECCCcccccccccc------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINT--VRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~------ 88 (125)
+||+++|++|||||||+.+ +.+.|.+++. |+.+.....+..++ +.+.+||++|++........
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~--------~~~~~~~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLES--------PEGGRFKKEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCC--------CCccceEEEEEECCEEEEEEEEECCCCCchhHHhcCCEEEEE
Confidence 4899999999999999999 7788877665 55444334566666 77999999999864333222
Q ss_pred -cccCccCHHHHHHHHhhh
Q psy9521 89 -DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++++
T Consensus 73 ~d~~~~~sf~~~~~~~~~i 91 (158)
T cd04103 73 FSLENEASFQTVYNLYHQL 91 (158)
T ss_pred EECCCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 59
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.77 E-value=1.6e-18 Score=113.74 Aligned_cols=80 Identities=29% Similarity=0.578 Sum_probs=66.9
Q ss_pred EEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--------
Q psy9521 18 FCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
+||+++|++|||||||++++ .+.|. .+. ||++.++..+...++.+.+||++|+++++.+|..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~--------pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~ 71 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTI--------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccC--------CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 48999999999999999994 66665 344 8999888777777899999999999998887766
Q ss_pred ----cccCccCHHHHHHHHhhh
Q psy9521 89 ----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|+..+
T Consensus 72 i~v~D~~~~~s~~~~~~~~~~~ 93 (159)
T cd04150 72 IFVVDSNDRERIGEAREELQRM 93 (159)
T ss_pred EEEEeCCCHHHHHHHHHHHHHH
Confidence 888888898888766554
No 60
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.77 E-value=3.5e-18 Score=115.06 Aligned_cols=93 Identities=24% Similarity=0.340 Sum_probs=73.1
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc------
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~------ 88 (125)
||+++|++|||||||+++ +.+.|..++. ||++.++. .+..++ +.+++||++|+++++.++..
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~--------~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~ 73 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYE--------PTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTD 73 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccC--------CcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCC
Confidence 799999999999999999 6778877776 88887764 344444 78999999999999888765
Q ss_pred ------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEee
Q psy9521 89 ------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++. .|+..+ .... ...|++.+.
T Consensus 74 ~~ilv~dv~~~~sf~~~~~~~~~~i-~~~~--~~~piilvg 111 (189)
T cd04134 74 VIMLCFSVDSPDSLENVESKWLGEI-REHC--PGVKLVLVA 111 (189)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH-HHhC--CCCCEEEEE
Confidence 999999999997 599887 2222 345555544
No 61
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.77 E-value=2.8e-18 Score=113.19 Aligned_cols=79 Identities=27% Similarity=0.476 Sum_probs=67.9
Q ss_pred EEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----------
Q psy9521 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---------- 88 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------- 88 (125)
|+++|++|||||||+++ ..+.+..++. ||++.+...+...++++.+||++|+++++.+|..
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~--------pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~ 73 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV--------PTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIF 73 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc--------ccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 79999999999999999 5566766666 9998877667777899999999999999988876
Q ss_pred --cccCccCHHHHHHHHhhh
Q psy9521 89 --DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|++++.|+..+
T Consensus 74 V~D~t~~~s~~~~~~~l~~~ 93 (164)
T cd04162 74 VVDSADSERLPLARQELHQL 93 (164)
T ss_pred EEECCCHHHHHHHHHHHHHH
Confidence 888888999888887766
No 62
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.77 E-value=4e-18 Score=115.68 Aligned_cols=83 Identities=29% Similarity=0.532 Sum_probs=70.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.+.|..++. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~ 76 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--------TTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYY 76 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------ccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHh
Confidence 468999999999999999999 6677776666 89887764 455554 68999999999998877664
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++.+
T Consensus 77 ~~a~~iilv~D~~~~~s~~~~~~~~~~i 104 (199)
T cd04110 77 RGTHGVIVVYDVTNGESFVNVKRWLQEI 104 (199)
T ss_pred CCCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 63
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.76 E-value=5e-18 Score=111.58 Aligned_cols=82 Identities=26% Similarity=0.535 Sum_probs=67.9
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|++|||||||+++ +.+.|...+. ||.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 73 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYI--------STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR 73 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhC
Confidence 37899999999999999999 6667766665 88876654 455554 68999999999998877654
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.||+++..|+..+
T Consensus 74 ~~~~ii~v~d~~~~~s~~~l~~~~~~~ 100 (166)
T cd01869 74 GAHGIIIVYDVTDQESFNNVKQWLQEI 100 (166)
T ss_pred cCCEEEEEEECcCHHHHHhHHHHHHHH
Confidence 999999999999999886
No 64
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.76 E-value=6.7e-18 Score=111.68 Aligned_cols=82 Identities=20% Similarity=0.483 Sum_probs=67.6
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccc-ccccc--
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQ-SLWDK-- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~-~~~~~-- 88 (125)
.+||+++|++|||||||+++ +.+.++.++. +|++.++. .+..++ +.+++||++|+++++ .++..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 73 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTE--------ATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYY 73 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccc--------cceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhh
Confidence 57999999999999999999 6677776666 88887764 455555 789999999999886 34333
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 101 (170)
T cd04115 74 RNVHAVVFVYDVTNMASFHSLPSWIEEC 101 (170)
T ss_pred cCCCEEEEEEECCCHHHHHhHHHHHHHH
Confidence 999999999999999876
No 65
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.76 E-value=5.7e-18 Score=116.06 Aligned_cols=82 Identities=24% Similarity=0.508 Sum_probs=68.9
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC---CEEEEEEECCCcccccccccc--
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN---TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
++||+++|++|||||||+++ +.+.+...+. ||++.++. .+... .+.+++||++|++++..++..
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~--------~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 73 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSD--------PTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYY 73 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------ceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHh
Confidence 58999999999999999999 6677777666 88887764 34432 278999999999998877654
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 74 ~~~d~iilv~D~~~~~Sf~~l~~~~~~i 101 (211)
T cd04111 74 RNSVGVLLVFDITNRESFEHVHDWLEEA 101 (211)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 66
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.76 E-value=5.4e-18 Score=111.74 Aligned_cols=82 Identities=22% Similarity=0.507 Sum_probs=69.7
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|++|||||||+++ ..+.|..++. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~ 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--------STIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYR 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc--------cCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhC
Confidence 47899999999999999999 6677877776 88887764 455554 78999999999998877654
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 75 ~ad~~i~v~d~~~~~s~~~~~~~~~~i 101 (167)
T cd01867 75 GAMGIILVYDITDEKSFENIRNWMRNI 101 (167)
T ss_pred CCCEEEEEEECcCHHHHHhHHHHHHHH
Confidence 999999999999999987
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.76 E-value=3.4e-18 Score=111.69 Aligned_cols=81 Identities=31% Similarity=0.512 Sum_probs=68.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC----CEEEEEEECCCcccccccccc--
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN----TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~----~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
+||+++|++|||||||+++ ..+.|.+++. ||++.++. .+..+ .+.+++||++|+++++.++..
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 72 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYK--------KTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYY 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHh
Confidence 4899999999999999999 6677776666 89888874 34433 488999999999999887765
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 73 ~~~~~~v~v~d~~~~~s~~~l~~~~~~~ 100 (162)
T cd04106 73 RGAQACILVFSTTDRESFEAIESWKEKV 100 (162)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 68
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=6.1e-18 Score=111.18 Aligned_cols=83 Identities=23% Similarity=0.442 Sum_probs=68.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.+.+..++. +|.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 73 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQG--------NTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYY 73 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCC--------CccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHh
Confidence 357899999999999999999 6677777665 78776553 555555 68999999999988776544
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.||++++.|+..+
T Consensus 74 ~~~d~~llv~d~~~~~s~~~~~~~~~~i 101 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEV 101 (165)
T ss_pred ccCCEEEEEEECcCHHHHHhHHHHHHHH
Confidence 999999999999999987
No 69
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.75 E-value=6.3e-18 Score=110.97 Aligned_cols=81 Identities=19% Similarity=0.395 Sum_probs=66.4
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.|.+.+. +|.+.++. .+..+ .+.+++||++|+++++.++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 72 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQL--------STYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHK 72 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--------CceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCC
Confidence 5899999999999999999 7777776665 67665543 23333 378999999999999888776
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|+..+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i 98 (161)
T cd04124 73 AHACILVFDVTRKITYKNLSKWYEEL 98 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999877
No 70
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.75 E-value=5.3e-18 Score=116.96 Aligned_cols=95 Identities=23% Similarity=0.369 Sum_probs=74.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
+||+++|++|||||||+++ +.++|.. +. ||++.++.......+.+.+||++|+++|+.++..
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~--------~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ 71 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TV--------STVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAV 71 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CC--------CccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEE
Confidence 5899999999999999999 6677753 44 8898877655556688999999999999888775
Q ss_pred ----cccCccCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 89 ----DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 ----Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++.||+++..|+..+ ......+++++.+..
T Consensus 72 IlV~Dvt~~~Sf~~l~~~~~~l--~~~~~~~~piIlVgN 108 (220)
T cd04126 72 ILTYDVSNVQSLEELEDRFLGL--TDTANEDCLFAVVGN 108 (220)
T ss_pred EEEEECCCHHHHHHHHHHHHHH--HHhcCCCCcEEEEEE
Confidence 999999999999877765 122334566655543
No 71
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.75 E-value=8.3e-18 Score=110.93 Aligned_cols=84 Identities=21% Similarity=0.418 Sum_probs=69.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.|.+++. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 74 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--------HTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPF 74 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--------CceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHH
Confidence 3568999999999999999999 6777777666 88887753 444444 78999999999999887765
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 103 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEF 103 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHH
Confidence 999999999999998866
No 72
>KOG0088|consensus
Probab=99.75 E-value=1.2e-18 Score=112.70 Aligned_cols=97 Identities=22% Similarity=0.314 Sum_probs=77.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEe--CCEEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDI--NTVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
-++|++++|++.||||||+-| +.++|..... .|+-..+. .+.+ ....++||||+|||+|..+-+.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHl--------sTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYY 83 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHL--------STLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYY 83 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHHhhcchhhH--------HHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEE
Confidence 468899999999999999999 8899988776 66644332 3333 3488999999999999998776
Q ss_pred ----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 ----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+.++.|..++ +..-...+.++.+.
T Consensus 84 RgSnGalLVyDITDrdSFqKVKnWV~El--r~mlGnei~l~IVG 125 (218)
T KOG0088|consen 84 RGSNGALLVYDITDRDSFQKVKNWVLEL--RTMLGNEIELLIVG 125 (218)
T ss_pred eCCCceEEEEeccchHHHHHHHHHHHHH--HHHhCCeeEEEEec
Confidence 999999999999999997 44445555555543
No 73
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.75 E-value=8.1e-18 Score=111.32 Aligned_cols=79 Identities=33% Similarity=0.595 Sum_probs=66.3
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---------
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------- 88 (125)
||+++|++|||||||++++ .+.+. ++. ||++.++..++.+++.+.+||++|+++++.+|..
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~--------~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii 71 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPI--------PTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVV 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcC--------CcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEE
Confidence 5899999999999999995 44443 344 8999888777788899999999999998877755
Q ss_pred ---cccCccCHHHHHHHHhhh
Q psy9521 89 ---DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|+..+
T Consensus 72 ~V~D~s~~~s~~~~~~~~~~~ 92 (169)
T cd04158 72 FVVDSSHRDRVSEAHSELAKL 92 (169)
T ss_pred EEEeCCcHHHHHHHHHHHHHH
Confidence 888889999998887776
No 74
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.75 E-value=6.9e-18 Score=111.58 Aligned_cols=80 Identities=33% Similarity=0.555 Sum_probs=68.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----------
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------- 88 (125)
+|+++|++|||||||++++.+.+..++. ||+|.+...+..+++.+++||++|+++++.+|..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~--------~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~ 72 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVA--------PTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVF 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCcccc--------CcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEE
Confidence 4899999999999999997666776666 9999887777888899999999999999888766
Q ss_pred --cccCccCHHHHHHHHhhh
Q psy9521 89 --DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|++++.|+..+
T Consensus 73 V~D~s~~~s~~~~~~~l~~l 92 (167)
T cd04161 73 VVDSSDDDRVQEVKEILREL 92 (167)
T ss_pred EEECCchhHHHHHHHHHHHH
Confidence 888888999988887754
No 75
>PLN03110 Rab GTPase; Provisional
Probab=99.75 E-value=1.2e-17 Score=114.87 Aligned_cols=83 Identities=20% Similarity=0.425 Sum_probs=70.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.+.+..++. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--------~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 82 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--------STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYY 82 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHh
Confidence 458999999999999999999 6677776666 99988874 455554 78999999999999887665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 83 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~ 110 (216)
T PLN03110 83 RGAVGALLVYDITKRQTFDNVQRWLREL 110 (216)
T ss_pred CCCCEEEEEEECCChHHHHHHHHHHHHH
Confidence 899999999999999876
No 76
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.75 E-value=7.9e-18 Score=112.74 Aligned_cols=81 Identities=26% Similarity=0.354 Sum_probs=67.3
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC---CEEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN---TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~---~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.|..++. ||++.++. .+... .+.+.+||++|++++..+++.
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~--------~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYV--------PTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPD 72 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCC--------CeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCC
Confidence 4899999999999999999 7777877776 88887764 44443 378999999999998877665
Q ss_pred --------cccCccCHHHHH-HHHhhh
Q psy9521 89 --------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~-~~l~~~ 106 (125)
|+++..||+++. .|+..+
T Consensus 73 ad~ii~v~d~~~~~s~~~~~~~~~~~~ 99 (187)
T cd04132 73 VDVLLICYAVDNPTSLDNVEDKWFPEV 99 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999997 488776
No 77
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.75 E-value=1.3e-17 Score=109.07 Aligned_cols=83 Identities=19% Similarity=0.344 Sum_probs=68.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+.+||+++|++|||||||+++ +.+.+..++. ||.+..+. ....++ +.+++||++|++++..++..
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 72 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYD--------PTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMR 72 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccC--------CCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHh
Confidence 358999999999999999999 7777666665 77765543 344444 78999999999999887765
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 73 ~~~~~ilv~d~~~~~s~~~~~~~~~~~ 99 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQI 99 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 78
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.74 E-value=1.1e-17 Score=109.75 Aligned_cols=96 Identities=21% Similarity=0.421 Sum_probs=73.7
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|++|||||||+++ +.+.+..++. ||.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSK--------STIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYR 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHC
Confidence 47899999999999999999 6666766665 88887664 444554 68999999999998877665
Q ss_pred ---------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 ---------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.+|+++..|+..+ ........+++.+.
T Consensus 75 ~~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~pi~vv~ 115 (165)
T cd01868 75 GAVGALLVYDITKKQTFENVERWLKEL--RDHADSNIVIMLVG 115 (165)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHH--HHhCCCCCeEEEEE
Confidence 999999999999999987 22222335555544
No 79
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.74 E-value=1.4e-17 Score=109.52 Aligned_cols=82 Identities=20% Similarity=0.358 Sum_probs=66.7
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
.+||+++|++|||||||+++ +.+.|..++. ||.+..+. .+..+ .+.+++||++|++++..++..
T Consensus 1 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 72 (165)
T cd04140 1 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYI--------PTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISK 72 (165)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCCCcC--------CcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhc
Confidence 37899999999999999999 7777877766 77775554 23332 378999999999999877654
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||++++.|++.+
T Consensus 73 ~~~~ilv~d~~~~~s~~~~~~~~~~i 98 (165)
T cd04140 73 GHAFILVYSVTSKQSLEELKPIYELI 98 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999988766
No 80
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.74 E-value=1.6e-17 Score=111.82 Aligned_cols=81 Identities=23% Similarity=0.433 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hhhcccc-ccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTK-NYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~-~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+||+++|++|||||||+++ +.++|.. ++. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 72 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQ--------NTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYR 72 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcc--------cceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcC
Confidence 4899999999999999999 6677763 455 88887663 455555 67889999999998877654
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++.+
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i 99 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKEL 99 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 81
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.74 E-value=1.1e-17 Score=114.74 Aligned_cols=81 Identities=31% Similarity=0.564 Sum_probs=69.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC---CEEEEEEECCCcccccccccc---
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN---TVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+||+++|++|||||||+++ +.+.|..++. ||++.++. .+..+ .+.+.+||++|++.+..++..
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~--------~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~ 72 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYK--------QTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIY 72 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhh
Confidence 4899999999999999999 6677877777 99998764 45543 388999999999988777665
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 73 ~ad~iilV~D~t~~~s~~~~~~w~~~l 99 (215)
T cd04109 73 GAHAVFLVYDVTNSQSFENLEDWYSMV 99 (215)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 82
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.74 E-value=1.4e-17 Score=111.84 Aligned_cols=81 Identities=28% Similarity=0.534 Sum_probs=67.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.|..++. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~ 72 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--------STIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRG 72 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccC
Confidence 4899999999999999999 6677776666 88887654 455544 78899999999988876655
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+..+
T Consensus 73 ~d~iilv~d~~~~~s~~~i~~~~~~i 98 (188)
T cd04125 73 AHGYLLVYDVTDQESFENLKFWINEI 98 (188)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 83
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.74 E-value=1.5e-17 Score=108.76 Aligned_cols=94 Identities=24% Similarity=0.496 Sum_probs=71.8
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|++++...+..
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 72 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--------HTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRG 72 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcC
Confidence 5899999999999999999 6677766665 77776654 344444 78999999999988776555
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|+++..+|+++..|+.++ ......+.+++.+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~iivv 111 (161)
T cd04113 73 AAGALLVYDITNRTSFEALPTWLSDA--RALASPNIVVILV 111 (161)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH--HHhCCCCCeEEEE
Confidence 999999999999999876 2223344455444
No 84
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.74 E-value=1.4e-17 Score=109.12 Aligned_cols=81 Identities=25% Similarity=0.422 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+++ +.+.+...+. ||.+..+. .+..++ +.+++||++|++++..++..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 72 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYD--------PTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccC--------CchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhC
Confidence 4899999999999999999 6677776665 66654443 344443 78999999999999887765
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|...+
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~i 97 (164)
T smart00173 73 EGFLLVYSITDRQSFEEIKKFREQI 97 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 899999999999988776
No 85
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.74 E-value=2.9e-17 Score=107.86 Aligned_cols=86 Identities=64% Similarity=1.008 Sum_probs=63.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----------
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------- 88 (125)
+|+++|++|||||||++++.+.+.. ..+.....+.||++.++..+..++..+.+||++|++.+..++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~ 79 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSK-YKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIY 79 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhccc-ccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 4899999999999999996554432 11233455568999988888888899999999999988776544
Q ss_pred --cccCccCHHHHHHHHhh
Q psy9521 89 --DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 89 --Di~~~~s~~~i~~~l~~ 105 (125)
|..+..+++++..|+..
T Consensus 80 vvd~~~~~~~~~~~~~~~~ 98 (167)
T cd04160 80 VIDSTDRERFEESKSALEK 98 (167)
T ss_pred EEECchHHHHHHHHHHHHH
Confidence 66666666666555544
No 86
>KOG0074|consensus
Probab=99.73 E-value=4.6e-17 Score=103.59 Aligned_cols=103 Identities=31% Similarity=0.540 Sum_probs=85.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCcccccccccc-----
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~~~----- 88 (125)
++++||+++|..++|||||++++..+-+.... ||-|++...+..++ .++++||.+||...|.+|.+
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hlt--------pT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenv 86 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLT--------PTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENV 86 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhcc--------ccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhcc
Confidence 68999999999999999999999876665555 99999999888887 99999999999999999998
Q ss_pred -------cccCccCHHHHHHHHhhh---------------------------------cccccCCCCeEEEEeeccC
Q psy9521 89 -------DIRDCMGVREVKPIFNKN---------------------------------SAHLIGRRDCMVMPVSALT 125 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~---------------------------------~~~~~~~~~~~i~~~sA~~ 125 (125)
|-++..-|+++..-+.++ +++.+.+|-|+|.+|||++
T Consensus 87 d~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals 163 (185)
T KOG0074|consen 87 DGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALS 163 (185)
T ss_pred ceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCcccc
Confidence 777777777776433222 2445677889999999874
No 87
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.73 E-value=5.3e-17 Score=107.55 Aligned_cols=84 Identities=19% Similarity=0.320 Sum_probs=70.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-Hhhccc-cccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFT-KNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~-~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
++-+||+++|++|||||||+++ +.+.|. .+|. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~--------~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~ 73 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYS--------PTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDA 73 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCC--------CccCcceEEEEEEECCeEEEEEEEecCCcccccccchh
Confidence 5678999999999999999999 677887 7777 99887653 455555 78999999999998777664
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|++.+
T Consensus 74 ~~~~~d~~llv~d~~~~~s~~~~~~~~~~~ 103 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKY 103 (169)
T ss_pred hhhcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 999999999999999865
No 88
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.73 E-value=1.4e-17 Score=112.20 Aligned_cols=80 Identities=23% Similarity=0.303 Sum_probs=66.9
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc------
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~------ 88 (125)
||+++|++|||||||+++ +.+.|...+. ||++..+. .+..++ +.+++||++|+++|+.++..
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYD--------PTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCC--------CchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCC
Confidence 589999999999999999 6777877776 88876653 444554 67999999999999887765
Q ss_pred ------cccCccCHHHHHHHHhhh
Q psy9521 89 ------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||+++..|+..+
T Consensus 73 ~~ilv~d~~~~~s~~~~~~~~~~i 96 (190)
T cd04144 73 GFILVYSITSRSTFERVERFREQI 96 (190)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 89
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=2.7e-17 Score=108.55 Aligned_cols=81 Identities=25% Similarity=0.462 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 76 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRG 76 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc
Confidence 6899999999999999999 6666666665 77777653 344444 78999999999988776553
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.||+.+..|+..+
T Consensus 77 ~d~il~v~d~~~~~s~~~~~~~~~~~ 102 (168)
T cd01866 77 AAGALLVYDITRRETFNHLTSWLEDA 102 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 90
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.73 E-value=2.8e-17 Score=108.73 Aligned_cols=92 Identities=24% Similarity=0.418 Sum_probs=70.9
Q ss_pred EEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-------
Q psy9521 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK------- 88 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~------- 88 (125)
|+++|++|||||||+++ +.+.|..++. ||....+. .+..++ +.+.+||++|+++|..++..
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 72 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYV--------PTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDV 72 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCC--------CcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCE
Confidence 58999999999999999 7777777776 77766654 445554 67999999999999877765
Q ss_pred -----cccCccCHHHHH-HHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++. .|+..+ .... ...|++.+.
T Consensus 73 ~ilv~d~~~~~s~~~~~~~~~~~i-~~~~--~~~piilv~ 109 (174)
T smart00174 73 FLICFSVDSPASFENVKEKWYPEV-KHFC--PNTPIILVG 109 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH-HhhC--CCCCEEEEe
Confidence 999999999997 599887 2222 345555544
No 91
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.73 E-value=3.8e-17 Score=108.32 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+.+ +.+.|..++. ||....+. .+..++ +.+++||++|++++..+++.
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 72 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYV--------PTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDT 72 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCC
Confidence 5899999999999999999 6788888877 77643332 344444 78899999999999888765
Q ss_pred -------cccCccCHHHHH-HHHhhh
Q psy9521 89 -------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.||+++. .|+..+
T Consensus 73 ~~~i~v~d~~~~~sf~~~~~~~~~~~ 98 (173)
T cd04130 73 DVFLLCFSVVNPSSFQNISEKWIPEI 98 (173)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999996 688877
No 92
>KOG0097|consensus
Probab=99.72 E-value=1.9e-17 Score=105.60 Aligned_cols=95 Identities=20% Similarity=0.439 Sum_probs=78.9
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+|.+++|+-|||||+|+.+ ...+|..+.+ .|+|+++. .+++. ++++++||++|||+|+...+.
T Consensus 12 fkyiiigdmgvgkscllhqftekkfmadcp--------htigvefgtriievsgqkiklqiwdtagqerfravtrsyyrg 83 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCP--------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRG 83 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHHhhcCC--------cccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 3499999999999999999 6789999988 99999986 34554 489999999999999988776
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++.+..+..+..|+... +.+.+.+-.|+.+.
T Consensus 84 aagalmvyditrrstynhlsswl~da--r~ltnpnt~i~lig 123 (215)
T KOG0097|consen 84 AAGALMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIFLIG 123 (215)
T ss_pred ccceeEEEEehhhhhhhhHHHHHhhh--hccCCCceEEEEec
Confidence 999999999999999987 45555555555443
No 93
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.72 E-value=4.1e-17 Score=107.65 Aligned_cols=82 Identities=16% Similarity=0.360 Sum_probs=68.3
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
++||+++|++|||||||+++ .++.+..++. ||++..+. .+..++ +.+++||++|+++|+.++..
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 72 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYD--------PTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKS 72 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhh
Confidence 47899999999999999999 6777776666 77776553 445554 78999999999999888777
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+.+..|.+.+
T Consensus 73 ~~~~vlv~~~~~~~s~~~~~~~~~~i 98 (168)
T cd04177 73 GQGFLLVYSVTSEASLNELGELREQV 98 (168)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 889999999999988876
No 94
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.72 E-value=2.7e-17 Score=110.85 Aligned_cols=94 Identities=26% Similarity=0.488 Sum_probs=71.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hhhcccc-ccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTK-NYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~-~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+||+++|++|||||||+++ +.+.+.. ++. +|++.++. .+..++ +.+++||++|++++..++..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 72 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFI--------ATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYR 72 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcC--------CcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHcc
Confidence 4899999999999999999 5666643 444 78877764 344554 78999999999988776554
Q ss_pred ---------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 ---------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|++++.||+++..|+..+ ........|++.+
T Consensus 73 ~ad~~i~v~D~~~~~s~~~~~~~~~~i--~~~~~~~~piiiv 112 (191)
T cd04112 73 DAHALLLLYDITNKASFDNIRAWLTEI--KEYAQEDVVIMLL 112 (191)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHH--HHhCCCCCcEEEE
Confidence 999999999999999887 2222234455444
No 95
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=5.3e-17 Score=108.98 Aligned_cols=96 Identities=28% Similarity=0.395 Sum_probs=73.9
Q ss_pred hhHHHHHhhh-ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 3 TLVSGFYKYM-LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 3 ~~~~~~~~~~-~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
..+..+++.+ +..++.||+++|++|||||||++++.+.....+. ||.+.....+..++..+.+||++|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~--------~T~~~~~~~i~~~~~~~~l~D~~G~~~ 75 (190)
T cd00879 4 DWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHV--------PTLHPTSEELTIGNIKFKTFDLGGHEQ 75 (190)
T ss_pred HHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccC--------CccCcceEEEEECCEEEEEEECCCCHH
Confidence 3344444444 3467899999999999999999996543333444 788777777778889999999999998
Q ss_pred ccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 82 LQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 82 ~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++.+|.. |..+..+|++...|+..+
T Consensus 76 ~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i 112 (190)
T cd00879 76 ARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSL 112 (190)
T ss_pred HHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 8766544 999999999888888776
No 96
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.72 E-value=2.8e-17 Score=107.63 Aligned_cols=81 Identities=23% Similarity=0.370 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHh-h--ccccccCCCCCCccccccceeeE--EEEeC---CEEEEEEECCCcccccccccc-
Q psy9521 18 FCVLILGLDNAGKTTYLESAK-T--KFTKNYKGMNPSKITTTVGLNIG--QIDIN---TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~-~--~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~~- 88 (125)
+||+++|++|||||||++++. + .|.+++. ||.+.++. .+..+ .+.+.+||++|++++..++..
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 72 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYL--------MTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNY 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCC--------CceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 589999999999999999953 3 5777777 99987764 33332 389999999999988776655
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|++.+
T Consensus 73 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 101 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKV 101 (164)
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999886
No 97
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.71 E-value=2.8e-17 Score=111.91 Aligned_cols=76 Identities=28% Similarity=0.516 Sum_probs=65.5
Q ss_pred EeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEE--EEeC--CEEEEEEECCCcccccccccc---------
Q psy9521 23 LGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ--IDIN--TVRLNFWDLGGQLELQSLWDK--------- 88 (125)
Q Consensus 23 ~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~--------- 88 (125)
+|++|||||||+++ +.+.|..++. ||+|.++.. +..+ .+++++||++|+++|+.+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~--------~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~i 72 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYV--------ATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 72 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCC--------CceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEE
Confidence 69999999999999 6777877777 999988753 3333 489999999999999988765
Q ss_pred ---cccCccCHHHHHHHHhhh
Q psy9521 89 ---DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||++++.|+.++
T Consensus 73 lV~D~t~~~S~~~i~~w~~~i 93 (200)
T smart00176 73 IMFDVTARVTYKNVPNWHRDL 93 (200)
T ss_pred EEEECCChHHHHHHHHHHHHH
Confidence 999999999999999987
No 98
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.71 E-value=5.7e-17 Score=105.81 Aligned_cols=95 Identities=23% Similarity=0.427 Sum_probs=72.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. |+.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~ 72 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQ--------ATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRD 72 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCC--------CceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcc
Confidence 3799999999999999999 6666665555 88877664 455555 67999999999998776655
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|..++.+|+++..|+.++ .... ....+++.+.
T Consensus 73 ~~~ii~v~d~~~~~s~~~~~~~~~~~-~~~~-~~~~~iilv~ 112 (161)
T cd01861 73 SSVAVVVYDITNRQSFDNTDKWIDDV-RDER-GNDVIIVLVG 112 (161)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH-HHhC-CCCCEEEEEE
Confidence 999999999999999987 2222 2245555543
No 99
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.71 E-value=7.1e-17 Score=106.84 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
.||+++|++|||||||+++ +.+.|...+. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 73 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDT 73 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCC
Confidence 5899999999999999999 6677777776 88876653 455544 68999999999998877654
Q ss_pred -------cccCccCHHHHH-HHHhhhcccccCCCCeEEEEee
Q psy9521 89 -------DIRDCMGVREVK-PIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|+.++.||+++. .|+..+ .....+.|++.+.
T Consensus 74 d~~i~v~~~~~~~s~~~~~~~~~~~~---~~~~~~~piilv~ 112 (175)
T cd01870 74 DVILMCFSIDSPDSLENIPEKWTPEV---KHFCPNVPIILVG 112 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH---HhhCCCCCEEEEe
Confidence 889999999996 588876 2212344555443
No 100
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.71 E-value=4e-17 Score=114.39 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=67.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee-EEEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI-GQIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+++ +.+.|..++. ||++..+ ..+..++ +.+++||++|++.|..++..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~--------pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~a 72 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYT--------PTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTG 72 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccC
Confidence 4899999999999999999 6788887776 8886332 3455555 78999999999988776554
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++++
T Consensus 73 d~iIlVfdv~~~~Sf~~i~~~~~~I 97 (247)
T cd04143 73 DVFILVFSLDNRESFEEVCRLREQI 97 (247)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999988887
No 101
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.71 E-value=5.2e-17 Score=108.87 Aligned_cols=82 Identities=35% Similarity=0.639 Sum_probs=63.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe-----CCEEEEEEECCCcccccccccc-
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI-----NTVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~D~~G~~~~~~~~~~- 88 (125)
+.+||+++|++|||||||+++ ..+.+... . ||.+.+...+.. .++.+.+||++|+++++.+|..
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~--------~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 72 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-V--------PTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSY 72 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-C--------CccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHH
Confidence 468999999999999999999 55555533 3 787766654333 3489999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+++++..|+.++
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i 101 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKI 101 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 888888888887776554
No 102
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.71 E-value=1.6e-16 Score=105.00 Aligned_cols=81 Identities=36% Similarity=0.596 Sum_probs=62.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc------
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------ 88 (125)
.+.+||+++|++|||||||++++.+.....+. ||.|.++..+..++..+.+||++|++++...|..
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~--------~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDISHIT--------PTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCcccC--------CCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 45899999999999999999997654333344 8888888788888899999999999877555443
Q ss_pred ------cccCccCHHHHHHHH
Q psy9521 89 ------DIRDCMGVREVKPIF 103 (125)
Q Consensus 89 ------Di~~~~s~~~i~~~l 103 (125)
|.++..++++...|+
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~ 104 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAEL 104 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHH
Confidence 666666666555443
No 103
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=6.4e-17 Score=105.58 Aligned_cols=80 Identities=29% Similarity=0.495 Sum_probs=65.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhh-c-cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--------
Q psy9521 19 CVLILGLDNAGKTTYLESAKT-K-FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~-~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
+|+++|++|||||||++++.+ . +...+. ||++.....+...++.+++||++|+++++.+|..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~--------~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV--------PTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec--------CccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEE
Confidence 489999999999999999554 3 344444 8998877666677899999999999998887766
Q ss_pred ----cccCccCHHHHHHHHhhh
Q psy9521 89 ----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+.+..|+..+
T Consensus 73 i~v~D~~~~~~~~~~~~~~~~~ 94 (162)
T cd04157 73 IFVIDSSDRLRLVVVKDELELL 94 (162)
T ss_pred EEEEeCCcHHHHHHHHHHHHHH
Confidence 999989998887777654
No 104
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=1.2e-16 Score=104.49 Aligned_cols=82 Identities=24% Similarity=0.461 Sum_probs=66.9
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
++||+++|++|||||||+++ +.+.+...+. ||.+..+. .+..++ +.+.+||++|++++...+..
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 72 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQE--------STIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYR 72 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhc
Confidence 47999999999999999999 6666666555 78776543 444444 78999999999988776655
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+.+..|+..+
T Consensus 73 ~~~~~i~v~d~~~~~s~~~~~~~~~~~ 99 (163)
T cd01860 73 GAAAAIVVYDITSEESFEKAKSWVKEL 99 (163)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 105
>PLN03108 Rab family protein; Provisional
Probab=99.70 E-value=1e-16 Score=109.68 Aligned_cols=83 Identities=24% Similarity=0.433 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.++|...+. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~--------~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~ 76 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------LTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYY 76 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHh
Confidence 358999999999999999999 5566776666 88887764 445554 77999999999988776654
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+.+..|+..+
T Consensus 77 ~~ad~~vlv~D~~~~~s~~~l~~~~~~~ 104 (210)
T PLN03108 77 RGAAGALLVYDITRRETFNHLASWLEDA 104 (210)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 999999999999998865
No 106
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.69 E-value=1.6e-16 Score=103.77 Aligned_cols=95 Identities=25% Similarity=0.535 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +...+...+. +|++.++. .+..++ +.+.+||++|++++...+..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ 72 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYK--------STIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCC
Confidence 5899999999999999999 5566655554 77777654 455555 78999999999888766554
Q ss_pred --------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 --------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|..++.+++.+..|+..+ ........|++.+.
T Consensus 73 ~d~~ilv~d~~~~~s~~~~~~~l~~~--~~~~~~~~pivvv~ 112 (164)
T smart00175 73 AVGALLVYDITNRESFENLKNWLKEL--REYADPNVVIMLVG 112 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH--HHhCCCCCeEEEEE
Confidence 999999999999999886 11122345555544
No 107
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.69 E-value=2.9e-16 Score=103.80 Aligned_cols=81 Identities=22% Similarity=0.295 Sum_probs=65.5
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|+|||||+++ ..+.|..++. ||.+..+. .+..++ +.+.+||++|++.|..++..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 72 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYV--------PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMT 72 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCC
Confidence 4899999999999999999 6777777666 77765543 444444 67889999999998877765
Q ss_pred -------cccCccCHHHHH-HHHhhh
Q psy9521 89 -------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~ 106 (125)
|+.++.+|+++. .|+..+
T Consensus 73 ~~~ilv~~~~~~~s~~~~~~~~~~~l 98 (174)
T cd04135 73 DVFLICFSVVNPASFQNVKEEWVPEL 98 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 899999999997 588776
No 108
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.68 E-value=1.7e-16 Score=108.75 Aligned_cols=84 Identities=26% Similarity=0.506 Sum_probs=71.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe--C--CEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI--N--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+|++++|++|||||||+++ +.+.+..++. ||++.++..... + ++.+.+||++|++++..++..
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~ 78 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYI--------PTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGY 78 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHH
Confidence 3578999999999999999988 7888887777 999988764333 2 489999999999988777644
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||.++..|+..+
T Consensus 79 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i 107 (215)
T PTZ00132 79 YIKGQCAIIMFDVTSRITYKNVPNWHRDI 107 (215)
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 109
>KOG0083|consensus
Probab=99.68 E-value=1.5e-18 Score=109.55 Aligned_cols=79 Identities=27% Similarity=0.451 Sum_probs=64.7
Q ss_pred EEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-------
Q psy9521 21 LILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK------- 88 (125)
Q Consensus 21 ~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~------- 88 (125)
+++|++++|||+|+.|. .+.|-... ..+|+|+++. -+++++ +++++|||+|||+|++....
T Consensus 1 mllgds~~gktcllir~kdgafl~~~-------fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~a 73 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGN-------FISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADA 73 (192)
T ss_pred CccccCccCceEEEEEeccCceecCc-------eeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccce
Confidence 36899999999999994 45443321 2289999986 345544 89999999999999998766
Q ss_pred -----cccCccCHHHHHHHHhhh
Q psy9521 89 -----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..||++++.|+.++
T Consensus 74 llllydiankasfdn~~~wlsei 96 (192)
T KOG0083|consen 74 LLLLYDIANKASFDNCQAWLSEI 96 (192)
T ss_pred eeeeeecccchhHHHHHHHHHHH
Confidence 999999999999999998
No 110
>KOG0072|consensus
Probab=99.68 E-value=1.9e-17 Score=105.55 Aligned_cols=114 Identities=28% Similarity=0.463 Sum_probs=99.0
Q ss_pred ChhhHHHHHhhhccC-ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 1 MYTLVSGFYKYMLRK-DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
|...++++|+.++.. ++.+++++|..|+|||+++.|++-. +...+.||+|++.+++..++.++++||++||
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvg--------evvttkPtigfnve~v~yKNLk~~vwdLggq 72 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVG--------EVVTTKPTIGFNVETVPYKNLKFQVWDLGGQ 72 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccC--------cccccCCCCCcCccccccccccceeeEccCc
Confidence 677889999999875 9999999999999999999997632 2333449999999999999999999999999
Q ss_pred ccccccccc------------------------------------------------cccCccCHHHHHHHHhhhccccc
Q psy9521 80 LELQSLWDK------------------------------------------------DIRDCMGVREVKPIFNKNSAHLI 111 (125)
Q Consensus 80 ~~~~~~~~~------------------------------------------------Di~~~~s~~~i~~~l~~~~~~~~ 111 (125)
-..+.+|+- |.+.+.+-.|+...+.+. ++
T Consensus 73 tSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~---~L 149 (182)
T KOG0072|consen 73 TSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQ---KL 149 (182)
T ss_pred ccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChH---HH
Confidence 998888887 888888888888888876 88
Q ss_pred CCCCeEEEEeeccC
Q psy9521 112 GRRDCMVMPVSALT 125 (125)
Q Consensus 112 ~~~~~~i~~~sA~~ 125 (125)
.++-|.|+..||.+
T Consensus 150 k~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 150 KDRIWQIVKTSAVK 163 (182)
T ss_pred hhheeEEEeecccc
Confidence 89999999999964
No 111
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.67 E-value=3.3e-16 Score=102.06 Aligned_cols=80 Identities=36% Similarity=0.585 Sum_probs=66.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----------
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------- 88 (125)
||+++|.+|||||||++++.+....++. +|.+.++..+..+++.+.+||++|+++++..|..
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 72 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTI--------PTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIF 72 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCC--------CCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEE
Confidence 6899999999999999995443344444 8888888878888899999999999998777665
Q ss_pred --cccCccCHHHHHHHHhhh
Q psy9521 89 --DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --Di~~~~s~~~i~~~l~~~ 106 (125)
|..++.+++++..|+..+
T Consensus 73 v~D~~~~~~~~~~~~~~~~~ 92 (158)
T cd00878 73 VVDSSDRERIEEAKEELHKL 92 (158)
T ss_pred EEECCCHHHHHHHHHHHHHH
Confidence 888888899888877665
No 112
>PLN03118 Rab family protein; Provisional
Probab=99.67 E-value=5.4e-16 Score=106.07 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=65.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
+..+||+++|++|||||||++++.+....++. ||.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 83 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVEDLA--------PTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYY 83 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCcC--------CCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 46789999999999999999995433334444 88887664 455554 78999999999998887665
Q ss_pred ----------cccCccCHHHHHH-HHhhh
Q psy9521 89 ----------DIRDCMGVREVKP-IFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~-~l~~~ 106 (125)
|.+++.+|+++.. |..++
T Consensus 84 ~~~d~~vlv~D~~~~~sf~~~~~~~~~~~ 112 (211)
T PLN03118 84 RNAQGIILVYDVTRRETFTNLSDVWGKEV 112 (211)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999986 65544
No 113
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.67 E-value=2.6e-16 Score=102.75 Aligned_cols=77 Identities=34% Similarity=0.577 Sum_probs=60.9
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---------
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------- 88 (125)
||+++|+++||||||++++ .+.+. .+. ||++.++..++..++++++||++|+++++.+|..
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 71 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TTI--------PTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAII 71 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-CcC--------CccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 6899999999999999996 44443 233 8888887777778899999999999998887665
Q ss_pred ---cccCccCHHHHHHHHh
Q psy9521 89 ---DIRDCMGVREVKPIFN 104 (125)
Q Consensus 89 ---Di~~~~s~~~i~~~l~ 104 (125)
|.+++.++.....++.
T Consensus 72 ~v~d~~~~~~~~~~~~~~~ 90 (158)
T cd04151 72 YVVDSTDRDRLGTAKEELH 90 (158)
T ss_pred EEEECCCHHHHHHHHHHHH
Confidence 8888777766655443
No 114
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.67 E-value=4.8e-16 Score=102.33 Aligned_cols=81 Identities=28% Similarity=0.504 Sum_probs=65.3
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|++.+..++..
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 72 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------ATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRG 72 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcC--------CccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcC
Confidence 4899999999999999999 6676666655 77776653 344544 77889999999988877764
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.++.+|+++..|.+.+
T Consensus 73 ~d~~i~v~d~~~~~~~~~~~~~~~~~ 98 (172)
T cd01862 73 ADCCVLVYDVTNPKSFESLDSWRDEF 98 (172)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999998887764
No 115
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.67 E-value=6e-16 Score=101.03 Aligned_cols=81 Identities=21% Similarity=0.459 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. ||.+.++. .+...+ +.+.+||++|++++..++..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 72 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--------ATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRG 72 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--------CcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCC
Confidence 5899999999999999999 5555555454 77777654 334443 78999999999988776654
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+.+..|+..+
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i 98 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNEL 98 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHH
Confidence 999999999999998866
No 116
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=4.8e-16 Score=105.62 Aligned_cols=81 Identities=20% Similarity=0.228 Sum_probs=63.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccc--------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQS-------- 84 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~-------- 84 (125)
+||+++|++|||||||+++ +.+.|..++. ||.+.++. .+..++ +.+++||++|++++..
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~--------pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~ 72 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYI--------PTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMD 72 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccC--------CccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHH
Confidence 4899999999999999999 7788877776 88875542 445555 7899999999765421
Q ss_pred -----cccc-------cccCccCHHHHHHHHhhh
Q psy9521 85 -----LWDK-------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 85 -----~~~~-------Di~~~~s~~~i~~~l~~~ 106 (125)
+... |++++.||+++..|++.+
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i 106 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQI 106 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 1111 999999999999998776
No 117
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.66 E-value=8e-16 Score=104.37 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=57.6
Q ss_pred eEEEEEEeCCCCcHHHHHH-HHh-hc-----cccccCCCCCCccccccce-e-eE-E--------EEeC--CEEEEEEEC
Q psy9521 17 EFCVLILGLDNAGKTTYLE-SAK-TK-----FTKNYKGMNPSKITTTVGL-N-IG-Q--------IDIN--TVRLNFWDL 76 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~-~i~-~~-----~~~~~~~~~~~~~~~t~~~-~-~~-~--------~~~~--~~~~~i~D~ 76 (125)
.+||+++|++|||||||+. +.. +. |..++. ||++. + +. . +..+ .+.+++|||
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~--------pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDT 73 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHV--------PTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDT 73 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccC--------CceecccceeEEeeeccccceeeCCEEEEEEEEeC
Confidence 5799999999999999996 543 32 334444 88863 2 22 1 1233 389999999
Q ss_pred CCccccc-c--cccc-------cccCccCHHHHH-HHHhhh
Q psy9521 77 GGQLELQ-S--LWDK-------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 77 ~G~~~~~-~--~~~~-------Di~~~~s~~~i~-~~l~~~ 106 (125)
+|++++. . +... |++++.||++++ .|++++
T Consensus 74 aG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i 114 (195)
T cd01873 74 FGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEI 114 (195)
T ss_pred CCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHH
Confidence 9997421 1 1111 999999999997 598887
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.65 E-value=5.1e-16 Score=101.27 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=62.1
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCcccccccccc--------
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
||+++|++|||||||++++ .+.+.. +. ||.+.++..+... ++.+.+||++|+++++..|..
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~--------~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~i 71 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TI--------PTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGL 71 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-cc--------CccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 5899999999999999994 454432 23 8888777666554 489999999999988776655
Q ss_pred ----cccCccCHHHHHHHHhhh
Q psy9521 89 ----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+++++..|+..+
T Consensus 72 v~v~D~~~~~~~~~~~~~~~~~ 93 (160)
T cd04156 72 VYVVDSSDEARLDESQKELKHI 93 (160)
T ss_pred EEEEECCcHHHHHHHHHHHHHH
Confidence 888888888888777664
No 119
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.65 E-value=5.6e-16 Score=101.79 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=61.4
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccc-cccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLEL-QSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~-~~~~~~----- 88 (125)
||+++|++|||||||+++ +.+.|.+++. ||.+..+. .+..++ +.+++||++|++++ ...+..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~ 72 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYD--------PNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWA 72 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccC--------CChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhC
Confidence 589999999999999999 7777777776 76654443 344443 67999999999853 222222
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..||++++.|+..+
T Consensus 73 d~~i~v~d~~~~~s~~~~~~~~~~~ 97 (165)
T cd04146 73 DGFVLVYSITDRSSFDEISQLKQLI 97 (165)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 120
>KOG0395|consensus
Probab=99.65 E-value=3e-16 Score=106.48 Aligned_cols=100 Identities=23% Similarity=0.381 Sum_probs=83.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
..+|++++|.+|||||+|+.+ +.+.|.++|. ||++..|. .+.+++ +.+.|+|++|++.+..+...
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~--------ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~ 73 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYD--------PTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIR 73 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccC--------CCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhc
Confidence 468999999999999999999 8999999998 99987665 555555 78999999999988877666
Q ss_pred ---------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeecc
Q psy9521 89 ---------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
+++++.||+++..+++++ .+.....++|++.|-.|
T Consensus 74 ~~~gF~lVysitd~~SF~~~~~l~~~I-~r~~~~~~~PivlVGNK 117 (196)
T KOG0395|consen 74 NGDGFLLVYSITDRSSFEEAKQLREQI-LRVKGRDDVPIILVGNK 117 (196)
T ss_pred cCcEEEEEEECCCHHHHHHHHHHHHHH-HHhhCcCCCCEEEEEEc
Confidence 999999999999999998 44444456777776543
No 121
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=1.5e-15 Score=99.84 Aligned_cols=84 Identities=21% Similarity=0.386 Sum_probs=66.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
+..+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|++.+...+..
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 76 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--------ATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSY 76 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 3568999999999999999999 5566655554 77775543 455555 77999999999888776544
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+++..|+.++
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~l 105 (169)
T cd04114 77 YRSANALILTYDITCEESFRCLPEWLREI 105 (169)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998776
No 122
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.65 E-value=9.9e-16 Score=100.91 Aligned_cols=81 Identities=10% Similarity=0.134 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCcccccccccc------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~------ 88 (125)
+||+++|++|||||||+++ +.+.|+.+++ ++...... .+...++++.+||++|++.++..+..
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad 72 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVP--------RVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKAN 72 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCC--------CcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCC
Confidence 4899999999999999999 6777766543 22211111 12224588999999999877654433
Q ss_pred ------cccCccCHHHHH-HHHhhh
Q psy9521 89 ------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 ------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|++.+
T Consensus 73 ~~ilv~d~~~~~s~~~~~~~~~~~i 97 (166)
T cd01893 73 VICLVYSVDRPSTLERIRTKWLPLI 97 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999986 587766
No 123
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.64 E-value=1.7e-15 Score=98.50 Aligned_cols=81 Identities=27% Similarity=0.428 Sum_probs=63.4
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|++|||||||+++ +.+.+...+. ++....+. .+...+ +.+.+||++|++.+..+++.
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 72 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHE--------STTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRD 72 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcC--------CccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhcc
Confidence 4899999999999999999 6666655544 55544432 333333 67999999999988877765
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+++.+..|++.+
T Consensus 73 ~~~~i~v~d~~~~~s~~~~~~~~~~i 98 (162)
T cd04123 73 ADGAILVYDITDADSFQKVKKWIKEL 98 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.63 E-value=1.2e-15 Score=98.55 Aligned_cols=78 Identities=33% Similarity=0.670 Sum_probs=63.6
Q ss_pred EEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----------
Q psy9521 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---------- 88 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---------- 88 (125)
|+++|++|||||||+++ ..+.+..++. ||++.++..+...++.+.+||++|+++++..|..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~ 73 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI--------PTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVY 73 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc--------CCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 79999999999999999 5566766666 9999888777777799999999999988876554
Q ss_pred --cccCccCHHHHHHHHhh
Q psy9521 89 --DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 89 --Di~~~~s~~~i~~~l~~ 105 (125)
|.++..++..+..|+..
T Consensus 74 v~d~~~~~~~~~~~~~~~~ 92 (159)
T cd04159 74 VVDAADRTALEAAKNELHD 92 (159)
T ss_pred EEECCCHHHHHHHHHHHHH
Confidence 77777778777665554
No 125
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.63 E-value=1.7e-15 Score=98.81 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+++ +.+.+...+. ++.+..+. ....+ .+.+.+||++|++++..++..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 72 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYE--------PTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSG 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccC--------CcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcC
Confidence 4899999999999999999 6677776665 66655443 23334 378999999999988777665
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.++.+|+++..|+..+
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~ 97 (164)
T cd04139 73 EGFLLVFSITDMESFTATAEFREQI 97 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 889999999999988877
No 126
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.63 E-value=1e-15 Score=104.71 Aligned_cols=98 Identities=24% Similarity=0.351 Sum_probs=73.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEE--EeC--CEEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQI--DIN--TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ ..+.+..++. ||++..+... ... .+++.+||++||++|+.+++.
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~ 75 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYP--------PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYY 75 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhcCcCcccCC--------CceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHh
Confidence 348999999999999999999 6788888887 8888776522 222 478999999999999988877
Q ss_pred ----------cccC-ccCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 89 ----------DIRD-CMGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 ----------Di~~-~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|..+ ..+++..+.|..++ ........+++.|-.
T Consensus 76 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~l--~~~~~~~~~iilv~n 119 (219)
T COG1100 76 RGANGILIVYDSTLRESSDELTEEWLEEL--RELAPDDVPILLVGN 119 (219)
T ss_pred cCCCEEEEEEecccchhhhHHHHHHHHHH--HHhCCCCceEEEEec
Confidence 7777 55555556799876 222223466666544
No 127
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.63 E-value=1.4e-15 Score=103.12 Aligned_cols=80 Identities=18% Similarity=0.316 Sum_probs=63.8
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCcccccccee-eEEEEeCC--EEEEEEECCCcccccccccc------
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLN-IGQIDINT--VRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~i~D~~G~~~~~~~~~~------ 88 (125)
||+++|++|||||||+++ +.+.+..++. +|.+.. ...+...+ +.+++||++|++++..++..
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad 72 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYR--------RTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSD 72 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCC--------CchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCC
Confidence 699999999999999999 6777766665 665422 23455555 78999999999988876654
Q ss_pred ------cccCccCHHHHHHHHhhh
Q psy9521 89 ------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 73 ~vilv~d~~~~~s~~~~~~~~~~i 96 (198)
T cd04147 73 AFALVYAVDDPESFEEVERLREEI 96 (198)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999888765
No 128
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.62 E-value=2.1e-15 Score=100.36 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=64.2
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee-EEEEeCC--EEEEEEECCCcccccccccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI-GQIDINT--VRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+.||+++|++|||||||+++ +.+.+...+. ||.+..+ ..+..++ +.+.+||++|+++++.++..
T Consensus 1 ~~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 72 (180)
T cd04137 1 QRKIAVLGSRSVGKSSLTVQFVEGHFVESYY--------PTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIG 72 (180)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCccccC--------cchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhh
Confidence 36899999999999999999 5666666555 7765443 3444444 67899999999988877665
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+++..|+..+
T Consensus 73 ~~~~i~v~d~~~~~~~~~~~~~~~~~ 98 (180)
T cd04137 73 IHGYILVYSVTSRKSFEVVKVIYDKI 98 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 888999999998877665
No 129
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.61 E-value=5.9e-15 Score=99.14 Aligned_cols=81 Identities=25% Similarity=0.353 Sum_probs=64.3
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
.|++++|+.|+|||||+++ ..+.+.+++. +|+...+. .+..++ +.+.+||++|++.+...++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a 73 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYH--------PTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKA 73 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCC
Confidence 5899999999999999999 4577766655 77766554 444444 67899999999888765433
Q ss_pred -------cccCccCHHHHH-HHHhhh
Q psy9521 89 -------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~ 106 (125)
|+++..+|+++. .|+..+
T Consensus 74 ~~~llv~~i~~~~s~~~~~~~~~~~i 99 (187)
T cd04129 74 HVILIGFAVDTPDSLENVRTKWIEEV 99 (187)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 889999999997 599987
No 130
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.61 E-value=3.9e-15 Score=95.99 Aligned_cols=81 Identities=31% Similarity=0.587 Sum_probs=65.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEE--EEeC--CEEEEEEECCCcccccccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ--IDIN--TVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
+||+++|+++||||||+++ ..+.+...+. +|.+.++.. +..+ ...+.+||++|++.+...+..
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~ 72 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK--------STIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRG 72 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC--------CceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcC
Confidence 4899999999999999999 5566665555 788877653 3333 388999999999887776554
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|..++.+++.+..|+..+
T Consensus 73 ~d~ii~v~d~~~~~~~~~~~~~~~~~ 98 (159)
T cd00154 73 AHGAILVYDITNRESFENLDKWLKEL 98 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 888899999999999887
No 131
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.61 E-value=7.1e-15 Score=96.64 Aligned_cols=81 Identities=27% Similarity=0.388 Sum_probs=61.4
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc-----
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+||+++|++|||||||+++ +.+.+..++. ||....+. .+..+ .+.+++||++|++++...+..
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~ 72 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV--------PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNT 72 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCC
Confidence 5899999999999999999 6676655555 66554433 33333 378999999999987665444
Q ss_pred -------cccCccCHHHHH-HHHhhh
Q psy9521 89 -------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~ 106 (125)
|.+++.+|.++. .|+..+
T Consensus 73 ~~~i~v~d~~~~~s~~~~~~~~~~~~ 98 (171)
T cd00157 73 DVFLICFSVDSPSSFENVKTKWIPEI 98 (171)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999887 477766
No 132
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.60 E-value=2.6e-15 Score=93.69 Aligned_cols=101 Identities=22% Similarity=0.359 Sum_probs=63.6
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---------
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--------- 88 (125)
||+|+|+.|||||||+++ +.+.+.... .......+++..+...+..+...+.+||++|++.+...+..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~i 78 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNS--VPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVI 78 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccc--cccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEE
Confidence 799999999999999999 445444110 01111223444333333333456999999999888775444
Q ss_pred ---cccCccCHHHHHH---HHhhhcccccCCCCeEEEEeecc
Q psy9521 89 ---DIRDCMGVREVKP---IFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 ---Di~~~~s~~~i~~---~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
|.+++.||+++.. |+..+ .-..+++|++.+..+
T Consensus 79 lv~D~s~~~s~~~~~~~~~~l~~~---~~~~~~~piilv~nK 117 (119)
T PF08477_consen 79 LVYDLSDPESLEYLSQLLKWLKNI---RKRDKNIPIILVGNK 117 (119)
T ss_dssp EEEECCGHHHHHHHHHHHHHHHHH---HHHSSCSEEEEEEE-
T ss_pred EEEcCCChHHHHHHHHHHHHHHHH---HccCCCCCEEEEEec
Confidence 9999999999865 45554 323455777766543
No 133
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.57 E-value=8.7e-15 Score=94.99 Aligned_cols=95 Identities=24% Similarity=0.332 Sum_probs=68.7
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc------
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~------ 88 (125)
||+++|++|||||||+++ +.+.+..++. |+.+..+. .+..+ .+.+++||++|++.+..++..
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYD--------PTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcC--------CChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCC
Confidence 699999999999999999 5666766665 66653333 34444 378999999999887776555
Q ss_pred ------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 ------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|..++.+++++..|+..+ .........+++.+.
T Consensus 73 ~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~~p~ivv~ 111 (160)
T cd00876 73 GFILVYSITDRESFEEIKGYREQI-LRVKDDEDIPIVLVG 111 (160)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHH-HHhcCCCCCcEEEEE
Confidence 999999999999988776 222222345555443
No 134
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.57 E-value=1.8e-14 Score=99.43 Aligned_cols=81 Identities=12% Similarity=0.190 Sum_probs=60.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hhhccc-cccCCCCCCccccccceee--EEEEeCC--EEEEEEECCCcccc-cc--cc-c
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFT-KNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFWDLGGQLEL-QS--LW-D 87 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~-~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~-~~--~~-~ 87 (125)
+||+++|++|||||||+++ +.+.+. ..+. ||.+.++ ..+..++ ..+.+||++|++.+ +. +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~--------~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 72 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYD--------ASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQ 72 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcC--------CCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcC
Confidence 4899999999999999999 467775 5555 6665232 3455543 78999999999822 11 11 1
Q ss_pred c-------cccCccCHHHHHHHHhhh
Q psy9521 88 K-------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~-------Di~~~~s~~~i~~~l~~~ 106 (125)
. |++++.||+++..|+.++
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l 98 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQL 98 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 1 999999999999998876
No 135
>KOG4252|consensus
Probab=99.55 E-value=2.7e-16 Score=103.77 Aligned_cols=95 Identities=27% Similarity=0.398 Sum_probs=77.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EE--EeCCEEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QI--DINTVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.-+|++++|..+|||+|+++| +++.|...|. .|+|.++. .+ ....++..+||++||+++..+...
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdyk--------ktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYK--------KTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccc--------cccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHh
Confidence 568999999999999999999 8999999998 99999985 23 333588999999999999888554
Q ss_pred ----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 ----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
.-+++.||+.+.+|.+.+ ...-..+|.+.+
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv---~~e~~~IPtV~v 130 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKV---QKETERIPTVFV 130 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHH---HHHhccCCeEEe
Confidence 778999999999999998 333344454443
No 136
>KOG0096|consensus
Probab=99.51 E-value=3.2e-14 Score=94.55 Aligned_cols=97 Identities=23% Similarity=0.407 Sum_probs=81.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe---CC-EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI---NT-VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~-~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+|++++|+.|.|||++++| +.++|...|. +|+|+....... .+ +++..||++|||.+..+...
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~--------at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyy 80 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYP--------ATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYY 80 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceeccc--------CcceeEEeeeeeecccCcEEEEeeecccceeecccccccE
Confidence 468899999999999999999 9999999998 999999874433 24 89999999999998776665
Q ss_pred ----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 89 ----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++.+..+.++..|.+.. .--..++||+.|-.
T Consensus 81 I~~qcAiimFdVtsr~t~~n~~rwhrd~---~rv~~NiPiv~cGN 122 (216)
T KOG0096|consen 81 IQGQCAIIMFDVTSRFTYKNVPRWHRDL---VRVRENIPIVLCGN 122 (216)
T ss_pred EecceeEEEeeeeehhhhhcchHHHHHH---HHHhcCCCeeeecc
Confidence 999999999999999987 22234478887754
No 137
>KOG1673|consensus
Probab=99.49 E-value=5e-14 Score=91.13 Aligned_cols=95 Identities=21% Similarity=0.432 Sum_probs=79.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.-.+||-++|++..|||||+.. +.+++.+++. .+.|+++. ++.+.+ +.+.+||++||+++..+.+.
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~--------q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYT--------QTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHHHHH--------HHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 4578999999999999999999 8988888877 89999985 555555 88999999999999988877
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEE
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~ 119 (125)
|++.+.++..+..|+.+. +...+..+||.
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QA--r~~NktAiPil 129 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQA--RGLNKTAIPIL 129 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHH--hccCCccceEE
Confidence 999999999999999997 33444455543
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.48 E-value=3.6e-13 Score=86.33 Aligned_cols=82 Identities=27% Similarity=0.357 Sum_probs=59.6
Q ss_pred eEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEE--EEeCC--EEEEEEECCCcccccccccc---
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ--IDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.+||+++|.+|+|||||+++ +.+.++.++. ++.+.++.. +..++ +.+.+||++|++++..++..
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 72 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYK--------PGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYR 72 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCC--------CCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHh
Confidence 37899999999999999999 5555555544 677666643 55666 88999999999988766544
Q ss_pred ---------cccCc-cCHHHHH-HHHhhh
Q psy9521 89 ---------DIRDC-MGVREVK-PIFNKN 106 (125)
Q Consensus 89 ---------Di~~~-~s~~~i~-~~l~~~ 106 (125)
|+... .++++.. .|...+
T Consensus 73 ~~~~~i~~~d~~~~v~~~~~~~~~~~~~~ 101 (161)
T TIGR00231 73 AVESSLRVFDIVILVLDVEEILEKQTKEI 101 (161)
T ss_pred hhhEEEEEEEEeeeehhhhhHhHHHHHHH
Confidence 66555 5666555 555544
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.43 E-value=6.2e-13 Score=86.63 Aligned_cols=60 Identities=23% Similarity=0.345 Sum_probs=42.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh----ccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKT----KFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~----~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~ 84 (125)
.|+++|.+|||||||++++.+ .+..++. ...|+...+..+... +..+.+|||+|++++..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~ 66 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKK------RGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIK 66 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhc------cCceEEeeeEEEEecCCcEEEEEECCChHHHHH
Confidence 489999999999999999653 2222211 113555555555555 78999999999988754
No 140
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.38 E-value=1.6e-12 Score=88.72 Aligned_cols=97 Identities=15% Similarity=0.239 Sum_probs=62.9
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe----CCEEEEEEECCCcccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI----NTVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
+|+++|++|||||+|+++ ..+.+...+. + ...++..+.. .+..+.+||+||+++++..+..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~--------s-~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~ 72 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVT--------S-IEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNS 72 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccC--------c-EeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhcc
Confidence 489999999999999999 4555554432 2 2223332222 3588999999999988776554
Q ss_pred --------cccCc-cCHHHHHHHHhhhccc-ccCCCCeEEEEeecc
Q psy9521 89 --------DIRDC-MGVREVKPIFNKNSAH-LIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 --------Di~~~-~s~~~i~~~l~~~~~~-~~~~~~~~i~~~sA~ 124 (125)
|..+. .++.++..|+..+... ....+.++++.++.|
T Consensus 73 ~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK 118 (203)
T cd04105 73 AKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNK 118 (203)
T ss_pred CCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecc
Confidence 66666 6788887776654111 112245666666543
No 141
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.37 E-value=7.4e-12 Score=82.15 Aligned_cols=56 Identities=27% Similarity=0.318 Sum_probs=40.0
Q ss_pred EEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
+|+++|.+|||||||++++. +.+.... ...+|.......+..+++.+.+|||+|+.
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~ 58 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAP------YPFTTKSLFVGHFDYKYLRWQVIDTPGLL 58 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCC------CCCcccceeEEEEccCceEEEEEECCCcC
Confidence 69999999999999999954 4332110 11145555555566667999999999984
No 142
>PRK15494 era GTPase Era; Provisional
Probab=99.37 E-value=8.6e-12 Score=91.12 Aligned_cols=61 Identities=26% Similarity=0.409 Sum_probs=44.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
++.++|+++|.+|||||||++++. +.+. .+ ....++|.......+..++.++.+|||+|+.
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~-iv----s~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~ 111 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLS-IV----TPKVQTTRSIITGIITLKDTQVILYDTPGIF 111 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCcee-ec----cCCCCCccCcEEEEEEeCCeEEEEEECCCcC
Confidence 567899999999999999999954 4332 11 1122355555445667778899999999984
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.36 E-value=4e-12 Score=85.85 Aligned_cols=70 Identities=20% Similarity=0.368 Sum_probs=45.4
Q ss_pred EEEEEeCCCCcHHHHHHH-Hh--hccccccCC----CCCCccccccceee----EEEEeCCEEEEEEECCCccccccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AK--TKFTKNYKG----MNPSKITTTVGLNI----GQIDINTVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~--~~~~~~~~~----~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~~~~~~ 87 (125)
+|+++|..+||||||+++ +. +.|...+.. ....+..++.|..+ ..+..++..+++||++|+++|...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 699999999999999999 54 445443210 00001112333332 24556679999999999998876554
Q ss_pred c
Q psy9521 88 K 88 (125)
Q Consensus 88 ~ 88 (125)
.
T Consensus 84 ~ 84 (194)
T cd01891 84 R 84 (194)
T ss_pred H
Confidence 4
No 144
>KOG0077|consensus
Probab=99.34 E-value=1.3e-12 Score=85.26 Aligned_cols=94 Identities=30% Similarity=0.399 Sum_probs=77.0
Q ss_pred HHHHHhhh-ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 5 VSGFYKYM-LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 5 ~~~~~~~~-~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
|++++.++ ..++.-|++++|..|+|||||++.+++.....+. ||..-..+.+.+.+.+++.+|++|+...+
T Consensus 7 F~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhv--------PTlHPTSE~l~Ig~m~ftt~DLGGH~qAr 78 (193)
T KOG0077|consen 7 FSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHV--------PTLHPTSEELSIGGMTFTTFDLGGHLQAR 78 (193)
T ss_pred HHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccC--------CCcCCChHHheecCceEEEEccccHHHHH
Confidence 56666666 4467889999999999999999999877776666 88877777888899999999999998888
Q ss_pred ccccc------------cccCccCHHHHHHHHhhh
Q psy9521 84 SLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 84 ~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
..|.. |..|..-|.+.+.-++..
T Consensus 79 r~wkdyf~~v~~iv~lvda~d~er~~es~~eld~l 113 (193)
T KOG0077|consen 79 RVWKDYFPQVDAIVYLVDAYDQERFAESKKELDAL 113 (193)
T ss_pred HHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHH
Confidence 88887 777777777777655554
No 145
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1e-11 Score=82.33 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=57.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhcccccc--C---CCCCCccccccceeeEEEEeCC-EEEEEEECCCcccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNY--K---GMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~--~---~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~~ 86 (125)
++-...||++.|+.++||||+++++..+..... . .........|+..++..+..++ ..++++|+|||+||+.+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 445788999999999999999999665543111 0 0111122367888998877766 899999999999999999
Q ss_pred cc
Q psy9521 87 DK 88 (125)
Q Consensus 87 ~~ 88 (125)
..
T Consensus 86 ~~ 87 (187)
T COG2229 86 EI 87 (187)
T ss_pred HH
Confidence 88
No 146
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.32 E-value=7.5e-12 Score=84.96 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=54.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccc---------cc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLE---------LQ 83 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~---------~~ 83 (125)
+..++|+++|++|||||||++++.+ .+... ....+|.......+...+ ..+.+||++|... +.
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 112 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE------DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFR 112 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccC------CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHH
Confidence 4467999999999999999999543 32211 111255555444555555 4899999999732 21
Q ss_pred cccc----c-------cccCccCHHHHHHHHhhh
Q psy9521 84 SLWD----K-------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 84 ~~~~----~-------Di~~~~s~~~i~~~l~~~ 106 (125)
..+. . |..++.+++.+..|.+.+
T Consensus 113 ~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l 146 (204)
T cd01878 113 STLEEVAEADLLLHVVDASDPDYEEQIETVEKVL 146 (204)
T ss_pred HHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHH
Confidence 1111 1 888888888776555543
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.29 E-value=3.2e-11 Score=90.83 Aligned_cols=83 Identities=20% Similarity=0.321 Sum_probs=56.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc---cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccccc----
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK---FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWD---- 87 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~---~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~---- 87 (125)
+..+||+++|++|||||||++++.+. +..+++ ..|.......+..++..+.+|||+|++++...+.
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~p-------gtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi 273 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIK-------GTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGI 273 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCC-------CcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHH
Confidence 46789999999999999999995432 222322 1223333346777889999999999865443211
Q ss_pred ---------c-------cccCccCHHHHHHHHhhh
Q psy9521 88 ---------K-------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ---------~-------Di~~~~s~~~i~~~l~~~ 106 (125)
. |.+++.++++. |+...
T Consensus 274 ~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~ 306 (442)
T TIGR00450 274 EKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDL 306 (442)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHH
Confidence 0 88888888776 55544
No 148
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.29 E-value=2.5e-11 Score=79.43 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=43.4
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeC---CEEEEEEECCCcccccccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN---TVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~ 88 (125)
.|+++|++|||||||+++ ..+++...+. ..+|.......+..+ +..+.+|||+|++.+..++..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEA------GGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccC------CCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHH
Confidence 389999999999999999 4455443221 112333333344443 688999999999888766554
No 149
>PRK04213 GTP-binding protein; Provisional
Probab=99.27 E-value=6.7e-12 Score=84.95 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=36.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
.+.++|+++|.+|||||||++++. +.+...+. |+.......+... .+.+||++|
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~--------~~~t~~~~~~~~~--~~~l~Dt~G 61 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKR--------PGVTRKPNHYDWG--DFILTDLPG 61 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC--------CceeeCceEEeec--ceEEEeCCc
Confidence 357899999999999999999954 33332222 4333333333333 689999999
No 150
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.26 E-value=2.5e-11 Score=81.00 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=38.6
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~ 79 (125)
.+.+..+|+++|++|+|||||++++.+ .+...+. ++.+.+.. .+..+ -.+.+||++|.
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~--------~~~~~t~~~~~~~~~-~~~~liDtpG~ 74 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTS--------KTPGRTQLINFFEVN-DGFRLVDLPGY 74 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccccc--------CCCCcceEEEEEEeC-CcEEEEeCCCC
Confidence 346788999999999999999999543 3444333 33332211 12223 36899999995
No 151
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.23 E-value=6.1e-11 Score=77.82 Aligned_cols=83 Identities=28% Similarity=0.277 Sum_probs=52.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCE-EEEEEECCCccc----cccccc------
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTV-RLNFWDLGGQLE----LQSLWD------ 87 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~----~~~~~~------ 87 (125)
.|+++|.+|||||||++++.+.... . + ....+|....+..+..++. .+.+|||+|+.. .+.+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~-v-~---~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-I-A---DYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHI 76 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc-c-c---CCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHH
Confidence 4899999999999999996543211 0 0 0001233333334445554 899999999732 111111
Q ss_pred --c-------cccCc-cCHHHHHHHHhhh
Q psy9521 88 --K-------DIRDC-MGVREVKPIFNKN 106 (125)
Q Consensus 88 --~-------Di~~~-~s~~~i~~~l~~~ 106 (125)
. |.++. .+++.+..|++++
T Consensus 77 ~~~d~vi~v~D~~~~~~~~~~~~~~~~~l 105 (170)
T cd01898 77 ERTRLLLHVIDLSGDDDPVEDYKTIRNEL 105 (170)
T ss_pred HhCCEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 1 88888 7898888887765
No 152
>KOG4423|consensus
Probab=99.23 E-value=2.3e-13 Score=90.33 Aligned_cols=97 Identities=22% Similarity=0.424 Sum_probs=78.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC---EEEEEEECCCcccccccccc-
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT---VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~---~~~~i~D~~G~~~~~~~~~~- 88 (125)
.-+|++|+|+-|+|||++++| +...|...|. .|+|.++. ....+. +++++||.+||+++..+...
T Consensus 24 hL~k~lVig~~~vgkts~i~ryv~~nfs~~yR--------AtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVy 95 (229)
T KOG4423|consen 24 HLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYR--------ATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVY 95 (229)
T ss_pred hhhhhheeeeccccchhHHHHHHHHHHHHHHH--------HHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEE
Confidence 345699999999999999999 8889999998 99998874 233333 78999999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhhcccc-c-CCCCeEEEE
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHL-I-GRRDCMVMP 120 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~-~-~~~~~~i~~ 120 (125)
|++++..|+.+..|.++.+... + .+.|++++.
T Consensus 96 ykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vl 140 (229)
T KOG4423|consen 96 YKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVL 140 (229)
T ss_pred ecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchhee
Confidence 9999999999999999983111 2 346666654
No 153
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.22 E-value=1.2e-10 Score=77.43 Aligned_cols=70 Identities=23% Similarity=0.181 Sum_probs=42.7
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCC----------CccccccceeeEEEEeCCEEEEEEECCCccccccccc
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNP----------SKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 87 (125)
+|+++|..|+|||||++++ .......+..... .....|.......+...+..+.+||++|+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999994 4444332210000 0011222333334555678999999999887655443
Q ss_pred c
Q psy9521 88 K 88 (125)
Q Consensus 88 ~ 88 (125)
.
T Consensus 81 ~ 81 (189)
T cd00881 81 R 81 (189)
T ss_pred H
Confidence 3
No 154
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.21 E-value=7.9e-11 Score=78.04 Aligned_cols=83 Identities=14% Similarity=0.250 Sum_probs=50.7
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhhc-------cccccCCCCCCccccccceeeE----EE-----EeCCEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTK-------FTKNYKGMNPSKITTTVGLNIG----QI-----DINTVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~-------~~~~~~~~~~~~~~~t~~~~~~----~~-----~~~~~~~~i~D~~G~~~ 81 (125)
+|+++|+.+||||||+++ +... +...+. .....+++.|..+. .+ ...++.+.+|||+|+++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVL--DSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEec--cCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 489999999999999999 4421 211221 00001122233332 12 22358899999999998
Q ss_pred ccccccc------------cccCccCHHHHHHHH
Q psy9521 82 LQSLWDK------------DIRDCMGVREVKPIF 103 (125)
Q Consensus 82 ~~~~~~~------------Di~~~~s~~~i~~~l 103 (125)
+...+.. |..+..+++.+..|.
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~ 113 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTLANFY 113 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence 8776554 777766666655443
No 155
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.19 E-value=9.7e-11 Score=85.97 Aligned_cols=81 Identities=16% Similarity=0.232 Sum_probs=55.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc-cc-cccCCCCCCccccccceeeEEEEe-CCEEEEEEECCCcc---------cccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK-FT-KNYKGMNPSKITTTVGLNIGQIDI-NTVRLNFWDLGGQL---------ELQS 84 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~-~~-~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~---------~~~~ 84 (125)
-.+|+++|.+|||||||++++.+. +. .++ ..+|.......+.. ++..+.+|||+|.. .|+.
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~-------~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~ 261 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQ-------LFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRA 261 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccC-------CccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHH
Confidence 488999999999999999995543 21 111 12566655566666 46899999999972 2222
Q ss_pred cccc-----------cccCccCHHHHHHHHh
Q psy9521 85 LWDK-----------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 85 ~~~~-----------Di~~~~s~~~i~~~l~ 104 (125)
.+.. |.+++.+++++..|.+
T Consensus 262 tle~~~~ADlil~VvD~s~~~~~~~~~~~~~ 292 (351)
T TIGR03156 262 TLEEVREADLLLHVVDASDPDREEQIEAVEK 292 (351)
T ss_pred HHHHHHhCCEEEEEEECCCCchHHHHHHHHH
Confidence 2211 8888888887754443
No 156
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.18 E-value=7.7e-11 Score=79.44 Aligned_cols=62 Identities=23% Similarity=0.345 Sum_probs=39.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc-----cccccCCCCCCccccccceeeEEEEeC--------------CEEEEEEECCC
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK-----FTKNYKGMNPSKITTTVGLNIGQIDIN--------------TVRLNFWDLGG 78 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~-----~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~i~D~~G 78 (125)
++|+++|..++|||||++++... +...+. ......|++..+..+... +..+.+||++|
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~---e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQ---SQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHH---HHHcCCeeeecceEEEecccccccccccccccCceEEEEECCC
Confidence 47999999999999999995431 111100 001124555554444333 68899999999
Q ss_pred cccc
Q psy9521 79 QLEL 82 (125)
Q Consensus 79 ~~~~ 82 (125)
+..+
T Consensus 78 ~~~~ 81 (192)
T cd01889 78 HASL 81 (192)
T ss_pred cHHH
Confidence 8653
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.17 E-value=2.9e-10 Score=85.17 Aligned_cols=62 Identities=18% Similarity=0.121 Sum_probs=41.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-hccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-TKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
..++++++|.+++|||||++++. +... .+.. ..|.......+..++..+.+|||+|..++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~-------gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~ 235 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIA-------GTTRDSIDIPFERNGKKYLLIDTAGIRRKGK 235 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCC-------CceECcEeEEEEECCcEEEEEECCCcccccc
Confidence 35899999999999999999954 3221 1111 1222222234556778899999999865543
No 158
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.17 E-value=1.1e-10 Score=78.40 Aligned_cols=58 Identities=21% Similarity=0.188 Sum_probs=39.9
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~ 79 (125)
+.....+|+++|++|+|||||++++. +++...+. ++.+.+.. ... .+..+.+||++|.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~--------~~~~~t~~~~~~~-~~~~l~l~DtpG~ 80 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTS--------KTPGRTQLINFFE-VNDKLRLVDLPGY 80 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccccc--------CCCCceeEEEEEe-cCCeEEEeCCCCC
Confidence 34567889999999999999999954 44454443 44443321 111 1478999999994
No 159
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.16 E-value=4.8e-11 Score=76.42 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=41.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc-----ccccccccc-----
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ-----LELQSLWDK----- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~~~~----- 88 (125)
||+++|++|||||||++++.+... .+. +|.+.++.. .+||++|+ +.++.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~-~~~--------~t~~~~~~~--------~~iDt~G~~~~~~~~~~~~~~~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI-LYK--------KTQAVEYND--------GAIDTPGEYVENRRLYSALIVTAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc-ccc--------cceeEEEcC--------eeecCchhhhhhHHHHHHHHHHhhcCC
Confidence 799999999999999999543322 223 666555431 68999998 233332211
Q ss_pred ------cccCccCHHH
Q psy9521 89 ------DIRDCMGVRE 98 (125)
Q Consensus 89 ------Di~~~~s~~~ 98 (125)
|.+++.++..
T Consensus 65 ~vilv~d~~~~~s~~~ 80 (142)
T TIGR02528 65 VIALVQSATDPESRFP 80 (142)
T ss_pred EEEEEecCCCCCcCCC
Confidence 7777777755
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.15 E-value=7.5e-10 Score=72.31 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=37.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
.++|+++|++|+|||||++++.+ .+..... ....+.......+..++..+.+||++|..
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~iiDtpG~~ 61 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-----IAGTTRDSIDVPFEYDGKKYTLIDTAGIR 61 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-----CCCCccCceeeEEEECCeeEEEEECCCCc
Confidence 57899999999999999999543 2211110 00112222223455567788999999964
No 161
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.14 E-value=1.7e-10 Score=89.52 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=43.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhh----ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKT----KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~----~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
.|+++|..++|||||++++.+ .+++++. ...|+.+.+..+..++..+.+||++|+++|...
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~------rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~ 66 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKK------RGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISN 66 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhc------CCceEEeEEEEEEeCCEEEEEEECCCHHHHHHH
Confidence 589999999999999999754 3333332 113333444456677799999999999987543
No 162
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.13 E-value=4.4e-10 Score=87.25 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=45.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCE-EEEEEECCCcccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTV-RLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~~~~~~~ 88 (125)
.+..+|+++|+.++|||||++++. .++...+. ..+.++++ ...+..++. .+.+|||||++.|..++..
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~----~GIT~~ig--~~~v~~~~~~~i~~iDTPGhe~F~~~r~r 154 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA----GGITQHIG--AYHVENEDGKMITFLDTPGHEAFTSMRAR 154 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccC----Cceeecce--EEEEEECCCcEEEEEECCCCcchhhHHHh
Confidence 356789999999999999999954 44433222 11112222 234444443 8999999999999777654
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.13 E-value=3.7e-10 Score=85.85 Aligned_cols=56 Identities=23% Similarity=0.254 Sum_probs=38.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHH-hhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLESA-KTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i-~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.+||+++|.+|||||||++++ .+.+. ..++ ..|.......+..++..+.+|||+|.
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~-------gtT~d~~~~~~~~~~~~~~l~DTaG~ 269 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVA-------GTTVDPVDSLIELGGKTWRFVDTAGL 269 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCC-------CccCCcceEEEEECCEEEEEEECCCc
Confidence 589999999999999999994 44321 1111 12222222356667888899999995
No 164
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.11 E-value=2e-09 Score=69.34 Aligned_cols=82 Identities=20% Similarity=0.212 Sum_probs=51.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccc-----------
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLW----------- 86 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~----------- 86 (125)
++|+++|++|+|||||++++.+........ ....|.......+..++..+.+||++|...+....
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSD----IAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREA 77 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccC----CCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHH
Confidence 579999999999999999965432111100 00122222233455567899999999976553210
Q ss_pred --cc-------cccCccCHHHHHHHH
Q psy9521 87 --DK-------DIRDCMGVREVKPIF 103 (125)
Q Consensus 87 --~~-------Di~~~~s~~~i~~~l 103 (125)
.. |..++.+..+.+.+.
T Consensus 78 ~~~~~~~v~v~d~~~~~~~~~~~~~~ 103 (157)
T cd04164 78 IEEADLVLFVIDASRGLDEEDLEILE 103 (157)
T ss_pred HhhCCEEEEEEECCCCCCHHHHHHHH
Confidence 00 888778887776543
No 165
>KOG3883|consensus
Probab=99.08 E-value=1.2e-09 Score=70.84 Aligned_cols=100 Identities=14% Similarity=0.179 Sum_probs=68.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC-C--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN-T--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+-.|++++|.-+||||+++.+ +.++...+ .+..||+...|. .++.+ + -.+.+|||+|-..+..-.+.
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~------~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprh 80 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPG------TELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRH 80 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCC------CccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHh
Confidence 4678999999999999999999 67654432 224488877664 44443 2 67999999998766221121
Q ss_pred ------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 ------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
+..++.||+.+.....+| +.......++|+..
T Consensus 81 y~q~aDafVLVYs~~d~eSf~rv~llKk~I-dk~KdKKEvpiVVL 124 (198)
T KOG3883|consen 81 YFQFADAFVLVYSPMDPESFQRVELLKKEI-DKHKDKKEVPIVVL 124 (198)
T ss_pred HhccCceEEEEecCCCHHHHHHHHHHHHHH-hhccccccccEEEE
Confidence 788899999887766666 22233455666543
No 166
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.08 E-value=3.9e-10 Score=74.22 Aligned_cols=78 Identities=24% Similarity=0.367 Sum_probs=50.1
Q ss_pred EEeCCCCcHHHHHHHHhhcc--ccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCccc----cccccc----c--
Q psy9521 22 ILGLDNAGKTTYLESAKTKF--TKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLE----LQSLWD----K-- 88 (125)
Q Consensus 22 v~G~~~~GKTsl~~~i~~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~----~~~~~~----~-- 88 (125)
++|++|||||||++++.+.. ..++. .+|...+...+..+ +..+.+||++|... .+.++. .
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYP-------FTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCC-------ceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHh
Confidence 58999999999999965432 12221 14444444456666 78999999999732 222211 1
Q ss_pred ---------cccCc------cCHHHHHHHHhhh
Q psy9521 89 ---------DIRDC------MGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~------~s~~~i~~~l~~~ 106 (125)
|..+. .+++++..|...+
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~ 106 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAEL 106 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHH
Confidence 77776 5677777666665
No 167
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.08 E-value=2.5e-10 Score=72.13 Aligned_cols=72 Identities=29% Similarity=0.447 Sum_probs=50.6
Q ss_pred EEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeC----CEEEEEEECCCcccccccccc-------
Q psy9521 22 ILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDIN----TVRLNFWDLGGQLELQSLWDK------- 88 (125)
Q Consensus 22 v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~i~D~~G~~~~~~~~~~------- 88 (125)
++|++|+|||||++++.+... .... +|. .++...... +..+.+||++|+..+...+..
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~--------~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYE--------TTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADG 71 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccc--------cch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCE
Confidence 589999999999999543322 3332 555 554433332 588999999998877654322
Q ss_pred -----cccCccCHHHHHHH
Q psy9521 89 -----DIRDCMGVREVKPI 102 (125)
Q Consensus 89 -----Di~~~~s~~~i~~~ 102 (125)
|..+..+++....|
T Consensus 72 ~i~v~d~~~~~~~~~~~~~ 90 (157)
T cd00882 72 IILVYDVTDRESFENVKEW 90 (157)
T ss_pred EEEEEECcCHHHHHHHHHH
Confidence 88888888888876
No 168
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.06 E-value=1.8e-09 Score=81.71 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=56.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh-cc--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc------
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT-KF--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL------ 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~-~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------ 85 (125)
+..++|+++|.+|||||||++++.+ .. ..+++ ..|.......+..++..+.+|||+|.+.+...
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-------gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi 285 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIA-------GTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGI 285 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-------CcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHH
Confidence 3568999999999999999999543 22 22221 13444444466778899999999998754321
Q ss_pred ---ccc-----------cccCccCHHHHHHHHh
Q psy9521 86 ---WDK-----------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 86 ---~~~-----------Di~~~~s~~~i~~~l~ 104 (125)
+.. |.+++.++++...|..
T Consensus 286 ~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~ 318 (449)
T PRK05291 286 ERSREAIEEADLVLLVLDASEPLTEEDDEILEE 318 (449)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh
Confidence 111 8888888887665543
No 169
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.05 E-value=3.9e-10 Score=74.04 Aligned_cols=45 Identities=22% Similarity=0.343 Sum_probs=31.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
+|+++|.+|+|||||++++.+.+... . +|.+..+.. . .+||+||+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~-~--------~~~~v~~~~---~----~~iDtpG~ 47 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA-R--------KTQAVEFND---K----GDIDTPGE 47 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC-c--------cceEEEECC---C----CcccCCcc
Confidence 69999999999999999987654321 1 444433321 1 26999997
No 170
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.05 E-value=4.2e-09 Score=68.08 Aligned_cols=62 Identities=24% Similarity=0.170 Sum_probs=37.7
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
...+|+++|++|+|||||++++.+....... .....+...........+..+.+||++|...
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~ 63 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS----PKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEecc----CCCCceeceEEEEEEcCCeEEEEEECCCCCc
Confidence 3578999999999999999996543221110 0001111111122333458899999999754
No 171
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.04 E-value=2e-09 Score=85.80 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=47.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
.+.-.|+++|..++|||||+.++. ..+..... ..+..+++ ...+..++..+++|||+|++.|..++..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~----~GIT~~ig--a~~v~~~~~~ItfiDTPGhe~F~~m~~r 356 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEA----GGITQHIG--AYQVETNGGKITFLDTPGHEAFTAMRAR 356 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccc----Cceeeecc--EEEEEECCEEEEEEECCCCccchhHHHh
Confidence 456679999999999999999964 33332211 11112223 2345566789999999999999877765
No 172
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.04 E-value=2.6e-09 Score=69.08 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=39.5
Q ss_pred EEeCCCCcHHHHHHHHhhc-cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 22 ILGLDNAGKTTYLESAKTK-FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 22 v~G~~~~GKTsl~~~i~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
++|.+|||||||++++.+. +..... ...|+......+..++..+.+|||+|++.+..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 58 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNW------PGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSP 58 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCC------CCcccccceEEEeeCCeEEEEEECCCccccCC
Confidence 5899999999999996543 222211 11344444456667788999999999987654
No 173
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.04 E-value=9e-10 Score=75.31 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=38.6
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhhc-cccc-c--------CC-------------CCCC--ccccccceeeEEEEeCCEEEE
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTK-FTKN-Y--------KG-------------MNPS--KITTTVGLNIGQIDINTVRLN 72 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~-~~~~-~--------~~-------------~~~~--~~~~t~~~~~~~~~~~~~~~~ 72 (125)
+|+++|..++|||||+++ +... .... . .+ .... ....|+......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 589999999999999999 4321 1100 0 00 0000 011233332334555678999
Q ss_pred EEECCCccccc
Q psy9521 73 FWDLGGQLELQ 83 (125)
Q Consensus 73 i~D~~G~~~~~ 83 (125)
+|||+|+++|.
T Consensus 81 liDTpG~~~~~ 91 (208)
T cd04166 81 IADTPGHEQYT 91 (208)
T ss_pred EEECCcHHHHH
Confidence 99999998764
No 174
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=3e-09 Score=79.90 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=39.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh-c-cc-cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT-K-FT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~-~-~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
..++|+++|.+|+|||||++++.+ . .. .... ..|.......+..++..+.+|||+|..+
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~-------gtt~~~~~~~~~~~~~~~~lvDT~G~~~ 233 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIA-------GTTRDSIDTPFERDGQKYTLIDTAGIRR 233 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCC-------CceEEEEEEEEEECCeeEEEEECCCCCC
Confidence 569999999999999999999543 2 11 1111 1222222234556778899999999643
No 175
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.02 E-value=3.6e-09 Score=80.49 Aligned_cols=62 Identities=19% Similarity=0.105 Sum_probs=40.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
...+|+++|.+|||||||++++.+....... .....|....+..+..++..+.+|||+|++.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~----~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~ 98 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVE----DVPGVTRDRVSYDAEWNGRRFTVVDTGGWEP 98 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCccccc----CCCCCCEeeEEEEEEECCcEEEEEeCCCcCC
Confidence 3468999999999999999995543211111 0011222223335566778899999999863
No 176
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.02 E-value=3.8e-09 Score=77.14 Aligned_cols=81 Identities=30% Similarity=0.362 Sum_probs=55.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcccc--ccCCCCCCccccccceeeEEEEe-CCEEEEEEECCCcccc----ccccc----
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTK--NYKGMNPSKITTTVGLNIGQIDI-NTVRLNFWDLGGQLEL----QSLWD---- 87 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~--~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~----~~~~~---- 87 (125)
.|.++|.++||||||++++.+..+. +|+ .+|+..+...+.. ++.++.+||++|..+- +.+..
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~va~yp-------fTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr 232 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPKIADYP-------FTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK 232 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCccCCCC-------CceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH
Confidence 4899999999999999997643221 221 2455555555666 4578999999997321 11111
Q ss_pred ----c-------cccCccCHHHHHHHHhhh
Q psy9521 88 ----K-------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ----~-------Di~~~~s~~~i~~~l~~~ 106 (125)
. |+++..++++++.|.+++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL 262 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNEL 262 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHH
Confidence 1 988877899998887766
No 177
>PTZ00099 rab6; Provisional
Probab=99.01 E-value=1.1e-09 Score=73.13 Aligned_cols=60 Identities=27% Similarity=0.527 Sum_probs=49.8
Q ss_pred hccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc------------cccCccCHHHHHHH
Q psy9521 39 TKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK------------DIRDCMGVREVKPI 102 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~------------Di~~~~s~~~i~~~ 102 (125)
+.|.++|. ||+|.++. .+..++ +.+.+|||+|+++++.++.. |++++.||+++..|
T Consensus 3 ~~F~~~~~--------~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w 74 (176)
T PTZ00099 3 DTFDNNYQ--------STIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 74 (176)
T ss_pred CCcCCCCC--------CccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHH
Confidence 45666666 99998885 345544 88999999999999888776 99999999999999
Q ss_pred Hhhh
Q psy9521 103 FNKN 106 (125)
Q Consensus 103 l~~~ 106 (125)
+..+
T Consensus 75 ~~~i 78 (176)
T PTZ00099 75 IQDI 78 (176)
T ss_pred HHHH
Confidence 9887
No 178
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.99 E-value=9.3e-09 Score=67.46 Aligned_cols=58 Identities=26% Similarity=0.391 Sum_probs=40.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
++|+++|.++||||||++++.+... .++++ .|+......+...+..+.+.|+||.-..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG-------~Tv~~~~g~~~~~~~~~~lvDlPG~ysl 60 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPG-------TTVEKKEGIFKLGDQQVELVDLPGIYSL 60 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTT-------SSSEEEEEEEEETTEEEEEEE----SSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCC-------CCeeeeeEEEEecCceEEEEECCCcccC
Confidence 5899999999999999999765432 34432 5666666677888899999999996433
No 179
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.99 E-value=3.7e-09 Score=79.43 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=44.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hh--hcccccc----------CCC-----------CCCc--cccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AK--TKFTKNY----------KGM-----------NPSK--ITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~--~~~~~~~----------~~~-----------~~~~--~~~t~~~~~~~~~~~ 67 (125)
.++.++|+++|..++|||||+.+ +. +.....+ .+. ..++ ...|+...+..+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999 43 2111100 000 0011 113333334456667
Q ss_pred CEEEEEEECCCccccc
Q psy9521 68 TVRLNFWDLGGQLELQ 83 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~ 83 (125)
+..+.+||++|+++|.
T Consensus 84 ~~~i~iiDtpGh~~f~ 99 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFI 99 (426)
T ss_pred CeEEEEEECCCHHHHH
Confidence 8999999999998764
No 180
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=98.99 E-value=6.2e-09 Score=73.85 Aligned_cols=58 Identities=28% Similarity=0.255 Sum_probs=36.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEE-EEeCCEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ-IDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~D~~G~~~ 81 (125)
+|+++|.+|||||||++++.+...... .... .|....+.. ....+.++.+|||||...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v----s~~~-~TTr~~i~~i~~~~~~qii~vDTPG~~~ 60 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT----SPKA-QTTRNRISGIHTTGASQIIFIDTPGFHE 60 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec----CCCC-CcccCcEEEEEEcCCcEEEEEECcCCCC
Confidence 689999999999999999654322111 0111 222222222 233457899999999754
No 181
>KOG1707|consensus
Probab=98.98 E-value=1.2e-09 Score=83.16 Aligned_cols=102 Identities=13% Similarity=0.165 Sum_probs=70.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc-----ccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL-----WDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-----~~~ 88 (125)
.+.+||+++|+.|||||||+-. +.++|+++.+...+...-| .+ +.=+.+...+.|++..+.-+.. +..
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP---ad---vtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP---AD---VTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC---Cc---cCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 5789999999999999999999 8899998876322222222 11 1123466889999755442222 111
Q ss_pred -------cccCccCHHHHH-HHHhhhccccc--CCCCeEEEEeecc
Q psy9521 89 -------DIRDCMGVREVK-PIFNKNSAHLI--GRRDCMVMPVSAL 124 (125)
Q Consensus 89 -------Di~~~~s~~~i~-~~l~~~~~~~~--~~~~~~i~~~sA~ 124 (125)
+.+++.+.+.+. .|+.++ +.. .....||+.|-.+
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPli--r~~~~~~~~~PVILvGNK 124 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLI--RQLFGDYHETPVILVGNK 124 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhh--hcccCCCccCCEEEEeec
Confidence 788999999999 699998 333 2377788877554
No 182
>PRK11058 GTPase HflX; Provisional
Probab=98.98 E-value=3e-09 Score=79.91 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=49.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh-ccc-cccCCCCCCccccccceeeEEEEeCCE-EEEEEECCCcccc--cccccc----
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT-KFT-KNYKGMNPSKITTTVGLNIGQIDINTV-RLNFWDLGGQLEL--QSLWDK---- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~-~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~D~~G~~~~--~~~~~~---- 88 (125)
.+|+++|.+|||||||++++.+ .+. .+.. ..|+......+...+. .+.+|||+|..+. ..++..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~-------~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~t 270 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQL-------FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKAT 270 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCC-------CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHH
Confidence 4799999999999999999653 221 1111 1444444445556553 7899999998432 111111
Q ss_pred --------------cccCccCHHHHHH
Q psy9521 89 --------------DIRDCMGVREVKP 101 (125)
Q Consensus 89 --------------Di~~~~s~~~i~~ 101 (125)
|.+++.+++.+..
T Consensus 271 l~~~~~ADlIL~VvDaS~~~~~e~l~~ 297 (426)
T PRK11058 271 LQETRQATLLLHVVDAADVRVQENIEA 297 (426)
T ss_pred HHHhhcCCEEEEEEeCCCccHHHHHHH
Confidence 8888888887643
No 183
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.98 E-value=5e-09 Score=78.68 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=46.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhc-ccccc-----------CCC-------------CCCccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTK-FTKNY-----------KGM-------------NPSKITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~-~~~~~-----------~~~-------------~~~~~~~t~~~~~~~~~~~ 67 (125)
.++.++|+++|..++|||||+.+ +... ..... .+. .......|+...+..++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46889999999999999999999 4211 10000 000 0011224555555566677
Q ss_pred CEEEEEEECCCccccc
Q psy9521 68 TVRLNFWDLGGQLELQ 83 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~ 83 (125)
+..+.+||++|+++|.
T Consensus 83 ~~~i~liDtpG~~~~~ 98 (425)
T PRK12317 83 KYYFTIVDCPGHRDFV 98 (425)
T ss_pred CeEEEEEECCCcccch
Confidence 8999999999998774
No 184
>PRK10218 GTP-binding protein; Provisional
Probab=98.98 E-value=4.8e-09 Score=81.76 Aligned_cols=71 Identities=21% Similarity=0.333 Sum_probs=47.2
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hh--hccccccCC----CCCCccccccceeeE----EEEeCCEEEEEEECCCcccccccc
Q psy9521 18 FCVLILGLDNAGKTTYLES-AK--TKFTKNYKG----MNPSKITTTVGLNIG----QIDINTVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~--~~~~~~~~~----~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~~~~~~~~ 86 (125)
-+|+++|..++|||||+.+ +. +.|...+.. ....+.+.+.|+.+. .+..+++.+++||++|+..|...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 4699999999999999999 54 334332110 111222344555543 455667999999999999887655
Q ss_pred cc
Q psy9521 87 DK 88 (125)
Q Consensus 87 ~~ 88 (125)
..
T Consensus 86 ~~ 87 (607)
T PRK10218 86 ER 87 (607)
T ss_pred HH
Confidence 44
No 185
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.98 E-value=4.3e-09 Score=83.43 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=45.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEe--CCEEEEEEECCCcccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDI--NTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
.+...|+++|..++|||||+.++. ..+..... ..+...++.....+.. .+..+.+|||||++.|..++..
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~----~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~r 314 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA----GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSR 314 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccC----CccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHH
Confidence 456689999999999999999954 33332211 1111222322222333 3489999999999998877664
No 186
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.98 E-value=7.9e-09 Score=71.97 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=41.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
+++++|.+|||||||++++.+... .+++ .+|.......+..++..+++||++|+.+.
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~-------~tT~~~~~g~~~~~~~~i~l~DtpG~~~~ 60 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYE-------FTTLTCVPGVLEYKGAKIQLLDLPGIIEG 60 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCC-------CccccceEEEEEECCeEEEEEECCCcccc
Confidence 689999999999999999765432 1111 13444444456678899999999998543
No 187
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=98.95 E-value=7.3e-09 Score=64.35 Aligned_cols=58 Identities=26% Similarity=0.242 Sum_probs=39.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
+|+++|.+|+|||||++.+.+...... ......|....+..+..++..+.++|++|-.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~----~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~ 58 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKV----SNIPGTTRDPVYGQFEYNNKKFILVDTPGIN 58 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEE----SSSTTSSSSEEEEEEEETTEEEEEEESSSCS
T ss_pred CEEEECCCCCCHHHHHHHHhccccccc----cccccceeeeeeeeeeeceeeEEEEeCCCCc
Confidence 689999999999999999654311111 0111144444455667788888999999964
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.95 E-value=3.9e-09 Score=83.79 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCCcHHHHHHHH-hhcc--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESA-KTKF--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i-~~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
..||+++|.+|||||||++++ .+.. ..+++ ..|.......+..++..+.+|||+|..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~-------gtT~d~~~~~~~~~~~~~~liDTaG~~ 509 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLA-------GTTRDPVDEIVEIDGEDWLFIDTAGIK 509 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCC-------CCCcCcceeEEEECCCEEEEEECCCcc
Confidence 479999999999999999995 4332 22222 123332223456677888899999963
No 189
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.94 E-value=9.6e-09 Score=73.23 Aligned_cols=84 Identities=19% Similarity=0.279 Sum_probs=51.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCC--CCCCccccccceeeE--EEEeCC--EEEEEEECCCccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKG--MNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~--~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~ 87 (125)
.-.++|+++|.+|+|||||+++ +...+...... .......+|+..... .+..++ +++.+|||+|-...
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~----- 76 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDN----- 76 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccc-----
Confidence 3478999999999999999999 55444322110 011223466665543 334455 68999999996532
Q ss_pred ccccCccCHHHHHHHHhh
Q psy9521 88 KDIRDCMGVREVKPIFNK 105 (125)
Q Consensus 88 ~Di~~~~s~~~i~~~l~~ 105 (125)
+.+...++.+..|++.
T Consensus 77 --~~~~~~~~~i~~yi~~ 92 (276)
T cd01850 77 --INNSDCWKPIVDYIDD 92 (276)
T ss_pred --ccchhhHHHHHHHHHH
Confidence 2234455555554443
No 190
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.94 E-value=2.6e-09 Score=79.87 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+++++|+++|..++|||||+.++.+.+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~ 29 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWT 29 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeec
Confidence 5789999999999999999999865443
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.93 E-value=9.4e-09 Score=77.27 Aligned_cols=57 Identities=23% Similarity=0.193 Sum_probs=41.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc---ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF---TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~---~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.+|+++|.+|||||||++++.+.. ..+++ ..|....+..+..++..+.+|||+|++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~-------~~t~d~~~~~~~~~~~~~~liDT~G~~~ 61 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTP-------GVTRDRIYGEAEWLGREFILIDTGGIEP 61 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCC-------CCcccceEEEEEECCcEEEEEECCCCCC
Confidence 379999999999999999954332 12221 1333444556677789999999999986
No 192
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.93 E-value=7.5e-09 Score=69.59 Aligned_cols=70 Identities=20% Similarity=0.248 Sum_probs=43.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-Hhhccc-ccc---------CCCCC--CccccccceeeEEEE--eCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFT-KNY---------KGMNP--SKITTTVGLNIGQID--INTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~-~~~---------~~~~~--~~~~~t~~~~~~~~~--~~~~~~~i~D~~G~ 79 (125)
|+-.+|+++|..++|||||+.+ +..... ... ..... ....-|+......+. ..+..++++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 3567899999999999999999 432211 000 00000 001134444444555 66799999999999
Q ss_pred ccccc
Q psy9521 80 LELQS 84 (125)
Q Consensus 80 ~~~~~ 84 (125)
..|..
T Consensus 81 ~~f~~ 85 (188)
T PF00009_consen 81 EDFIK 85 (188)
T ss_dssp HHHHH
T ss_pred cceee
Confidence 87644
No 193
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.92 E-value=3.8e-09 Score=73.43 Aligned_cols=62 Identities=21% Similarity=0.390 Sum_probs=39.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~ 84 (125)
||+++|+.++||||+...+-.++++... ...++|...+...+... ++.+++||.|||..+-.
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT----~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~ 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT----LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFME 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG----GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc----cccCCcCCceEEEEecCCCcEEEEEEcCCcccccc
Confidence 7999999999999999996554432211 22347777776666544 58999999999976544
No 194
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.90 E-value=4.8e-09 Score=71.49 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
++|.++|..|+|||||+..+.+.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~ 23 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV 23 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999997543
No 195
>PRK00089 era GTPase Era; Reviewed
Probab=98.88 E-value=2.2e-08 Score=71.62 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=37.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEE-EeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQI-DINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~i~D~~G~~~ 81 (125)
+.-.|+++|.+|||||||++++.+....... ... .|.......+ ..++.++.+|||+|...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs----~~~-~tt~~~i~~i~~~~~~qi~~iDTPG~~~ 65 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVS----PKP-QTTRHRIRGIVTEDDAQIIFVDTPGIHK 65 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecC----CCC-CcccccEEEEEEcCCceEEEEECCCCCC
Confidence 4556999999999999999995443221111 011 2222222222 33458999999999744
No 196
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.87 E-value=2.6e-08 Score=72.70 Aligned_cols=82 Identities=26% Similarity=0.302 Sum_probs=52.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccccc----ccc----
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLELQ----SLW---- 86 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~----~~~---- 86 (125)
..|+++|.++||||||++++.+..+ .+|+ .+|...+...+..++ .++.+||+||..+-. .+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~-------fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~fl 230 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYP-------FTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFL 230 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCC-------CCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHH
Confidence 4589999999999999999654322 1221 134444444555666 899999999984321 111
Q ss_pred c----c-------cccCc---cCHHHHHHHHhhh
Q psy9521 87 D----K-------DIRDC---MGVREVKPIFNKN 106 (125)
Q Consensus 87 ~----~-------Di~~~---~s~~~i~~~l~~~ 106 (125)
. . |+++. .+++++..|.+++
T Consensus 231 rhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL 264 (329)
T TIGR02729 231 KHIERTRVLLHLIDISPLDGRDPIEDYEIIRNEL 264 (329)
T ss_pred HHHHhhCEEEEEEcCccccccCHHHHHHHHHHHH
Confidence 1 1 77765 6777777776654
No 197
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.87 E-value=2.7e-08 Score=74.25 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=46.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
.+|++++|-++||||||+|++.++-.- ...+.-..|.......++.++.++.+.||+|..+-..+...
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~----Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~ 245 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERV----IVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES 245 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceE----EecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccc
Confidence 599999999999999999995432111 11112224554444567788999999999998766555443
No 198
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.85 E-value=1.7e-08 Score=78.71 Aligned_cols=84 Identities=14% Similarity=0.264 Sum_probs=50.6
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhhc-------cccccCCCCCCccccccceeeE----EEEe---C--CEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTK-------FTKNYKGMNPSKITTTVGLNIG----QIDI---N--TVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~-------~~~~~~~~~~~~~~~t~~~~~~----~~~~---~--~~~~~i~D~~G~~~ 81 (125)
+++++|+.++|||||+.+ +... +...+. ...+.+.+.|.++. .+.. + .+.+++|||+|+++
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~--D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVL--DSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCcccccccccc--CCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 599999999999999999 5431 111111 00111122344432 2222 2 28899999999999
Q ss_pred ccccccc------------cccCccCHHHHHHHHh
Q psy9521 82 LQSLWDK------------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 82 ~~~~~~~------------Di~~~~s~~~i~~~l~ 104 (125)
|...+.. |.++..+++....|..
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~ 117 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL 117 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH
Confidence 8765544 7666656655554443
No 199
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.84 E-value=8e-09 Score=66.58 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=39.2
Q ss_pred EEEeCCCCcHHHHHHHHhhcc---ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 21 LILGLDNAGKTTYLESAKTKF---TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 21 ~v~G~~~~GKTsl~~~i~~~~---~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+++|.+|||||||++++.+.. ...++ ..|....+.....++..+.+||++|...+..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~ 60 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTP-------GVTRDRIYGEAEWGGREFILIDTGGIEPDDE 60 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCC-------CceeCceeEEEEECCeEEEEEECCCCCCchh
Confidence 479999999999999965432 22221 1233334445666788999999999987544
No 200
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.84 E-value=4.5e-08 Score=73.50 Aligned_cols=55 Identities=29% Similarity=0.413 Sum_probs=39.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcccc--ccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTK--NYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~ 80 (125)
.|+++|.++||||||++++.+..+. +|+ .+|...++..+..+ +.++.+||+||..
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~yp-------fTTl~PnlG~v~~~~~~~~~laD~PGli 217 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYH-------FTTLVPNLGVVETDDGRSFVMADIPGLI 217 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCC-------cceeceEEEEEEEeCCceEEEEECCCCc
Confidence 6999999999999999997643321 221 14555555555555 6889999999973
No 201
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.83 E-value=1.6e-08 Score=79.08 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=40.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhh----ccccccCCCCCCccccccceeeEEEEe-CCEEEEEEECCCccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKT----KFTKNYKGMNPSKITTTVGLNIGQIDI-NTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~----~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~ 83 (125)
-|.++|..++|||||++++.+ .++++.. ...|+...+..+.. ++..+.+||+||+++|.
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~------rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi 65 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKK------RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFL 65 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhccc------CCceEEeeeEEEecCCCcEEEEEECCCHHHHH
Confidence 378999999999999999764 2333321 12555555444433 35778999999999873
No 202
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.82 E-value=2.2e-08 Score=68.03 Aligned_cols=66 Identities=18% Similarity=0.207 Sum_probs=39.1
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccc-------cC--CCCCC--ccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKN-------YK--GMNPS--KITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~-------~~--~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++|+++|..++|||||+.++....... +. ..... ....|+......++.++.++.+.||+|+..|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHH
Confidence 5789999999999999999943221000 00 00000 1112222222344456788999999998765
No 203
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.82 E-value=4.4e-08 Score=78.33 Aligned_cols=64 Identities=22% Similarity=0.292 Sum_probs=43.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
++++|+++|.+|||||||++++.+.... .. +....|+......+..++.++++||+||+..+..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vg----n~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~ 65 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-VG----NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc-cC----CCCCceEeeEEEEEEcCceEEEEEECCCcccccc
Confidence 4678999999999999999997643221 10 0011333332334566678999999999976643
No 204
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.81 E-value=2.6e-08 Score=64.32 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
||+++|+.|||||||++++.+..
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCC
Confidence 69999999999999999987643
No 205
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.81 E-value=5.7e-08 Score=72.89 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=38.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc---cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT---KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~---~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
+|+++|.+|||||||++++.+... .+++ ..|....+..+..++..+.+|||+|..
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~-------g~t~d~~~~~~~~~~~~~~liDTpG~~ 58 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTP-------GVTRDRKYGDAEWGGREFILIDTGGIE 58 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCC-------CcccCceEEEEEECCeEEEEEECCCCC
Confidence 589999999999999999554321 1211 123334445666778899999999963
No 206
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.80 E-value=4.6e-09 Score=70.38 Aligned_cols=96 Identities=21% Similarity=0.262 Sum_probs=52.1
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEe---CCEEEEEEECCCcccccccccc------
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDI---NTVRLNFWDLGGQLELQSLWDK------ 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~~~~~~~~------ 88 (125)
.++++|+.|+|||+|+.++ .+.+.+.+ +.+.-+. .... .+..+.+.|+||+++.+.....
T Consensus 5 ~vlL~Gps~SGKTaLf~~L~~~~~~~T~---------tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~ 74 (181)
T PF09439_consen 5 TVLLVGPSGSGKTALFSQLVNGKTVPTV---------TSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLS 74 (181)
T ss_dssp EEEEE-STTSSHHHHHHHHHHSS---B------------SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHG
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCcCCee---------ccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchh
Confidence 5899999999999999994 55433222 2221111 1222 2367899999999988762111
Q ss_pred ---------ccc-CccCHHHHHHHHhhh-cccccCCCCeEEEEeecc
Q psy9521 89 ---------DIR-DCMGVREVKPIFNKN-SAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 ---------Di~-~~~s~~~i~~~l~~~-~~~~~~~~~~~i~~~sA~ 124 (125)
|-. ......++.+++..+ .......+.+++...|.|
T Consensus 75 ~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK 121 (181)
T PF09439_consen 75 NAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNK 121 (181)
T ss_dssp GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-
T ss_pred hCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeC
Confidence 432 334456666655554 111224567787777765
No 207
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.79 E-value=3.4e-08 Score=69.44 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=42.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
...++|+++|.+|||||||++.+.+....... .....|..........++..+.++||+|-...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~----~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATS----AFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccC----CCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 46799999999999999999995543211110 00013333333344567789999999997543
No 208
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.79 E-value=4.9e-08 Score=62.27 Aligned_cols=60 Identities=20% Similarity=0.098 Sum_probs=35.7
Q ss_pred EEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCccccccc
Q psy9521 22 ILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 22 v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~ 85 (125)
++|..|+|||||++++.+....... .....|........... ...+.+||++|.......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~ 61 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS----PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL 61 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC----CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccc
Confidence 5899999999999996543222110 00112222222233333 578999999998766443
No 209
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.78 E-value=2e-08 Score=75.22 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+++.++|+++|..++|||||+.++.+.+
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~ 33 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVW 33 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCee
Confidence 4688999999999999999998886543
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.77 E-value=2.9e-08 Score=68.43 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=38.4
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhh--cccc----cc------CCC-----------C--CCccccccceeeEEEEeCCEEEE
Q psy9521 19 CVLILGLDNAGKTTYLES-AKT--KFTK----NY------KGM-----------N--PSKITTTVGLNIGQIDINTVRLN 72 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~--~~~~----~~------~~~-----------~--~~~~~~t~~~~~~~~~~~~~~~~ 72 (125)
.|+++|..++|||||+.+ +.. .... ++ .+. . ......|+......+..++.++.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 379999999999999999 431 1000 00 000 0 00111233333345666789999
Q ss_pred EEECCCccccc
Q psy9521 73 FWDLGGQLELQ 83 (125)
Q Consensus 73 i~D~~G~~~~~ 83 (125)
+||++|+..|.
T Consensus 81 liDtpG~~~~~ 91 (219)
T cd01883 81 ILDAPGHRDFV 91 (219)
T ss_pred EEECCChHHHH
Confidence 99999986553
No 211
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.76 E-value=6.8e-08 Score=73.74 Aligned_cols=58 Identities=22% Similarity=0.258 Sum_probs=42.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
-..|+++|.++||||||++++.+..+. ..+...+|+..+...+...+.++.+||++|.
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpk-----IadypfTTl~P~lGvv~~~~~~f~laDtPGl 216 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPK-----IADYPFTTLVPNLGVVQAGDTRFTVADVPGL 216 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCcc-----ccccCcccccceEEEEEECCeEEEEEECCCC
Confidence 456999999999999999997643221 1111235666666677778899999999995
No 212
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.75 E-value=9.9e-08 Score=66.64 Aligned_cols=70 Identities=21% Similarity=0.249 Sum_probs=42.4
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhhc-cc---cccC-C-CCCC------ccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTK-FT---KNYK-G-MNPS------KITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~-~~---~~~~-~-~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
+|+++|..|+|||||+++ +... .. .... + ...+ ....|+...+..+..++.++.+||++|+.+|...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 378999999999999999 4421 10 0000 0 0000 1112333334456677899999999999887554
Q ss_pred ccc
Q psy9521 86 WDK 88 (125)
Q Consensus 86 ~~~ 88 (125)
+..
T Consensus 81 ~~~ 83 (237)
T cd04168 81 VER 83 (237)
T ss_pred HHH
Confidence 333
No 213
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.75 E-value=3.3e-08 Score=64.47 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=38.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE-EEEeCCEEEEEEECCC
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG-QIDINTVRLNFWDLGG 78 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G 78 (125)
...+++++|.+++||||+++++.+.....+. ++.|.+.. .+...+..+.+|||+|
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTS--------PSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccC--------CCCCeeeeeEEEEcCCCEEEEECcC
Confidence 5678999999999999999996554433333 55555432 2111234789999998
No 214
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.74 E-value=5.3e-08 Score=72.58 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=42.8
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhcccc--c-------cCCCCCC--ccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTK--N-------YKGMNPS--KITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~--~-------~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||+.++.+.... + ....... ....|+......+..++.++.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 468899999999999999999995321000 0 0000000 0113333323334445688999999999877
Q ss_pred c
Q psy9521 83 Q 83 (125)
Q Consensus 83 ~ 83 (125)
.
T Consensus 89 ~ 89 (394)
T TIGR00485 89 V 89 (394)
T ss_pred H
Confidence 4
No 215
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.74 E-value=6.2e-08 Score=66.39 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=48.5
Q ss_pred EEEEEeCCCCcHHHHHHH-HhhccccccC----C-----CCCCccccccceeeE----EEE-----eCCEEEEEEECCCc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFTKNYK----G-----MNPSKITTTVGLNIG----QID-----INTVRLNFWDLGGQ 79 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~~~~~----~-----~~~~~~~~t~~~~~~----~~~-----~~~~~~~i~D~~G~ 79 (125)
+|+++|..++|||||+.+ +...+..... . ....+.+...+..+. .+. ..++.+.+||++|+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 489999999999999999 5543322100 0 000000111222221 121 12388999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++|...+.. |..+..++.. +.++...
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~ 119 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHA 119 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 988544332 7766666543 3444443
No 216
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.72 E-value=9.1e-08 Score=70.17 Aligned_cols=34 Identities=21% Similarity=0.434 Sum_probs=30.2
Q ss_pred cccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 55 TTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 55 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
||.|+....+..++..+.+||++||...|..|..
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~ 203 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIH 203 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHH
Confidence 6778887788888999999999999999999977
No 217
>KOG0090|consensus
Probab=98.70 E-value=2.6e-08 Score=67.85 Aligned_cols=99 Identities=17% Similarity=0.204 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
-.++++|+.++|||+|+.+ +++.+.+.+ +.+.-+...+......+++.|.||+.+.|.....
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---------tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~a 109 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV---------TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSA 109 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCee---------eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccc
Confidence 3599999999999999999 666544333 2222222233344456899999999877653322
Q ss_pred --------cccCccCHHHHHHHHhhhc-ccccCCCCeEEEEeeccC
Q psy9521 89 --------DIRDCMGVREVKPIFNKNS-AHLIGRRDCMVMPVSALT 125 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~~-~~~~~~~~~~i~~~sA~~ 125 (125)
.........++.+++-++- ......+.+++..+|.++
T Consensus 110 kaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKq 155 (238)
T KOG0090|consen 110 KAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQ 155 (238)
T ss_pred eeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecch
Confidence 3334445556666665551 111245778888888653
No 218
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.69 E-value=1.1e-07 Score=74.26 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=37.0
Q ss_pred eCCCCcHHHHHHHHhhccc-cccCCCCCCcccccccee--eEEEEeCCEEEEEEECCCccccccc
Q psy9521 24 GLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLN--IGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 24 G~~~~GKTsl~~~i~~~~~-~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
|.+|||||||++++.+... ... .|+...+ ...++.++.++++||++|++.+...
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n--------~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~ 57 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGN--------WPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTF 57 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecC--------CCCeEEEEEEEEEEECCeEEEEEECCCccccCcc
Confidence 8899999999999654321 111 1333333 3356667888999999999887654
No 219
>PLN03126 Elongation factor Tu; Provisional
Probab=98.69 E-value=1.4e-07 Score=71.92 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=42.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhc-------cccccCCCC--CCc--cccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTK-------FTKNYKGMN--PSK--ITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~-------~~~~~~~~~--~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++++++|..++|||||+.++... ....+.... .++ ..-|+......+..++.++.++|++|+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 467899999999999999999994321 111000000 000 112222222244556789999999999877
No 220
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=4.8e-08 Score=62.88 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=34.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
-+++++|.+|||||||++++.+....... .. +........+..++ .+.+|||||-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~----~~--~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVS----AT--PGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeC----CC--CCcccceEEEEeCC-CEEEEECCCc
Confidence 38999999999999999995432221111 00 11122223344443 6799999995
No 221
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.69 E-value=2e-07 Score=74.16 Aligned_cols=62 Identities=18% Similarity=0.095 Sum_probs=39.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
...+|+++|.++||||||++++.+....... .....|....+.....++..+.+|||+|.+.
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~----~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~ 335 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVE----DTPGVTRDRVSYDAEWAGTDFKLVDTGGWEA 335 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeec----CCCCeeEEEEEEEEEECCEEEEEEeCCCcCC
Confidence 3467999999999999999996543221111 0000122222223455678999999999864
No 222
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.67 E-value=2.1e-07 Score=67.61 Aligned_cols=34 Identities=24% Similarity=0.529 Sum_probs=29.7
Q ss_pred cccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 55 TTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 55 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
||.|+....+..+++.+.+||++||...+..|..
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~ 180 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIH 180 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHH
Confidence 6777777778888899999999999999999877
No 223
>COG1159 Era GTPase [General function prediction only]
Probab=98.67 E-value=2.6e-07 Score=65.80 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=40.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
+.-.++++|.++||||||+|++-+.... +-++..+.|..---..++.++.++.+.||||--+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Kis----IvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~ 66 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKIS----IVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHK 66 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceE----eecCCcchhhhheeEEEEcCCceEEEEeCCCCCC
Confidence 3456999999999999999996543321 1222222343332334555679999999999643
No 224
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.66 E-value=1.5e-07 Score=73.42 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=42.5
Q ss_pred EEEEEeCCCCcHHHHHHH-Hh--hccccccCC----CCCCccc----cccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AK--TKFTKNYKG----MNPSKIT----TTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~--~~~~~~~~~----~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|+++|..++|||||+.+ +. +.+...... ....+.+ .|+......+..+++++++|||+|++.|..
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ 79 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGG 79 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHH
Confidence 589999999999999999 54 333322100 0011111 233333335677789999999999988753
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.66 E-value=2.4e-07 Score=65.82 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=40.2
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhh-cccccc--------CCCC-CC------ccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKT-KFTKNY--------KGMN-PS------KITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~-~~~~~~--------~~~~-~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
+|+++|..|+|||||+++ +.. ...... .+.. .+ ....++......+..++.++.+|||+|+++
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 499999999999999999 432 111100 0000 00 001222223335667789999999999987
Q ss_pred ccc
Q psy9521 82 LQS 84 (125)
Q Consensus 82 ~~~ 84 (125)
|..
T Consensus 84 f~~ 86 (267)
T cd04169 84 FSE 86 (267)
T ss_pred HHH
Confidence 654
No 226
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.66 E-value=3.2e-08 Score=67.11 Aligned_cols=23 Identities=17% Similarity=0.488 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+||+++|++|+|||||++.+.+
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g 23 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRG 23 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999999543
No 227
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.66 E-value=5.9e-08 Score=75.57 Aligned_cols=66 Identities=27% Similarity=0.371 Sum_probs=42.3
Q ss_pred EEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEe----------------CCEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDI----------------NTVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~D~~G~~~ 81 (125)
-|+++|..++|||||++++. ..+.... +..+.+++|..+...+. +...+.+|||+|++.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~~v~~~e----~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGSAVAKRE----AGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcccccccc----CCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 48999999999999999954 3333221 12233455544322111 012388999999999
Q ss_pred ccccccc
Q psy9521 82 LQSLWDK 88 (125)
Q Consensus 82 ~~~~~~~ 88 (125)
|..++..
T Consensus 82 f~~l~~~ 88 (590)
T TIGR00491 82 FTNLRKR 88 (590)
T ss_pred HHHHHHH
Confidence 8877655
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=98.66 E-value=1.2e-07 Score=70.65 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=42.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccccCCC---------CCC--ccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGM---------NPS--KITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~---------~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||+.++.+.......+. ..+ ....|+......+..++..+.++|+||+++|
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 47889999999999999999999543111000000 000 1112332222233345678899999999876
Q ss_pred c
Q psy9521 83 Q 83 (125)
Q Consensus 83 ~ 83 (125)
.
T Consensus 89 ~ 89 (394)
T PRK12736 89 V 89 (394)
T ss_pred H
Confidence 3
No 229
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.65 E-value=7e-08 Score=71.21 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=34.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~ 81 (125)
+..++|+|+|++|+|||||+|.+.+--.++...-+...++.|.... .+...+ -++.+||+||...
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~gt 98 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIGT 98 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GGG
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCCC
Confidence 4688999999999999999999875433221110111111222211 222333 3588999999643
No 230
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.65 E-value=1.1e-07 Score=71.33 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
+.-+|++++|.+|||||||+|.+.++-. .+..+....|..+--+.+.++|+.+.+.||+|-.+....
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~----AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~ 281 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR----AIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDV 281 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc----eEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccH
Confidence 4678999999999999999999543321 122222235555555688999999999999998654443
No 231
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.65 E-value=1.9e-07 Score=73.45 Aligned_cols=72 Identities=14% Similarity=0.122 Sum_probs=44.1
Q ss_pred hccCceEEEEEEeCCCCcHHHHHHH-Hhhc-cccc-----------cCCC--C-------------CCccccccceeeEE
Q psy9521 12 MLRKDEFCVLILGLDNAGKTTYLES-AKTK-FTKN-----------YKGM--N-------------PSKITTTVGLNIGQ 63 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~-~~~~-----------~~~~--~-------------~~~~~~t~~~~~~~ 63 (125)
...++.++|+++|..++|||||+.+ +... ...+ ..+. . .....-|+...+..
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3456889999999999999999999 5421 1100 0010 0 00011233333334
Q ss_pred EEeCCEEEEEEECCCccccc
Q psy9521 64 IDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 64 ~~~~~~~~~i~D~~G~~~~~ 83 (125)
+..++.++.++|+||+++|.
T Consensus 99 ~~~~~~~~~liDtPG~~~f~ 118 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYT 118 (632)
T ss_pred EccCCceEEEEECCChHHHH
Confidence 55567889999999998763
No 232
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.64 E-value=1.3e-07 Score=65.54 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhhccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~~~~ 42 (125)
|++++|+.++|||||+.+ ..+.|.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~ 25 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELD 25 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcC
Confidence 589999999999999999 555554
No 233
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.64 E-value=6.8e-08 Score=62.56 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=35.2
Q ss_pred EEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCc
Q psy9521 19 CVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~ 79 (125)
.|+++|++|+|||||++.+. +.+..... ++.+.+.. .+..+ ..+.+||++|.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~--------~~~~~t~~~~~~~~~-~~~~~~D~~g~ 55 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTS--------KTPGKTQLINFFNVN-DKFRLVDLPGY 55 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeec--------CCCCcceeEEEEEcc-CeEEEecCCCc
Confidence 38999999999999999954 44444433 44443322 22223 38999999994
No 234
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.63 E-value=1.6e-07 Score=71.58 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=43.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhh-ccccc-----c------CCCC---------------CCccccccceeeEEEE
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKT-KFTKN-----Y------KGMN---------------PSKITTTVGLNIGQID 65 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~-~~~~~-----~------~~~~---------------~~~~~~t~~~~~~~~~ 65 (125)
.+..++|+++|..++|||||+.+ +.. +.... + .+.. .....-|+...+..+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 47889999999999999999999 532 11100 0 0100 0001123333333455
Q ss_pred eCCEEEEEEECCCccccc
Q psy9521 66 INTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 66 ~~~~~~~i~D~~G~~~~~ 83 (125)
.++.++.++|+||+++|.
T Consensus 104 ~~~~~i~~iDTPGh~~f~ 121 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYT 121 (474)
T ss_pred cCCcEEEEEECCCcHHHH
Confidence 567899999999998773
No 235
>PRK12735 elongation factor Tu; Reviewed
Probab=98.62 E-value=2.2e-07 Score=69.35 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCC---------C--CCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKG---------M--NPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~---------~--~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
++.++|+++|..++|||||+.++.+.......+ . ......-|+......+..++..+.++|+||+++|
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 678999999999999999999953211000000 0 0001112222222234445678999999999766
No 236
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.62 E-value=3.1e-07 Score=65.08 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=39.9
Q ss_pred EEEEEeCCCCcHHHHHHHH-hhccccccCCCCCC------------ccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 19 CVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPS------------KITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
+|+++|.+|+|||||++++ .........+.... ....++......+..++..+.+||++|+..+.
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHH
Confidence 4899999999999999994 32111110000000 01133333344566678999999999997654
No 237
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.61 E-value=1.3e-07 Score=64.00 Aligned_cols=59 Identities=19% Similarity=0.235 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc--cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK--FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
++|+++|.+|||||||++.+.+. +.... .....|..+.......++..+.+.||||-..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~-----~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d 61 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKL-----SASSVTKTCQKESAVWDGRRVNVIDTPGLFD 61 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcccccc-----CCCCcccccceeeEEECCeEEEEEECcCCCC
Confidence 37999999999999999995433 21111 0111344444445556789999999999643
No 238
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.61 E-value=2.3e-07 Score=66.93 Aligned_cols=64 Identities=16% Similarity=0.180 Sum_probs=41.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
...++|+++|.+||||||+++++.++.......... .+..........++.++.++||+|....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s----~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQS----EGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCC----cceeEEEEEEEECCeEEEEEECCCCCch
Confidence 468899999999999999999955543221111011 1111112233457899999999997643
No 239
>PRK13351 elongation factor G; Reviewed
Probab=98.60 E-value=3e-07 Score=72.99 Aligned_cols=87 Identities=18% Similarity=0.123 Sum_probs=56.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhhcc-c---cccC-CC-C------CCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKF-T---KNYK-GM-N------PSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~-~---~~~~-~~-~------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
+..+|+++|..++|||||+.+ +...- . .+.. +. . ......|+......+..++..+++|||+|+.+|
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 456799999999999999999 43210 0 0000 00 0 012335666666667778899999999999877
Q ss_pred cccccc------------cccCccCHHHHHHH
Q psy9521 83 QSLWDK------------DIRDCMGVREVKPI 102 (125)
Q Consensus 83 ~~~~~~------------Di~~~~s~~~i~~~ 102 (125)
...+.. |..+..+.+...-|
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 554333 77666666655444
No 240
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.60 E-value=2.5e-07 Score=63.49 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=35.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc-cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
++|+++|..|+||||+++.+-+.-. ... ......|..+.......++..+.++||||-
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~----~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl 59 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSG----SSAKSVTQECQKYSGEVDGRQVTVIDTPGL 59 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------TTTSS--SS-EEEEEEETTEEEEEEE--SS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeec----cccCCcccccceeeeeecceEEEEEeCCCC
Confidence 5899999999999999999543221 111 011113444555555778999999999994
No 241
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.59 E-value=1.8e-07 Score=70.04 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=40.0
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hhhc-cccc-----c------CCCC---------------CCccccccceeeEEEEeCCE
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTK-FTKN-----Y------KGMN---------------PSKITTTVGLNIGQIDINTV 69 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~-~~~~-----~------~~~~---------------~~~~~~t~~~~~~~~~~~~~ 69 (125)
++|+++|..++|||||+.+ +... .... + .+.. .....-|+...+..+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 4799999999999999999 4321 1000 0 0000 00011233333344555678
Q ss_pred EEEEEECCCccccc
Q psy9521 70 RLNFWDLGGQLELQ 83 (125)
Q Consensus 70 ~~~i~D~~G~~~~~ 83 (125)
++.++|++|+++|.
T Consensus 81 ~~~liDtPGh~~f~ 94 (406)
T TIGR02034 81 KFIVADTPGHEQYT 94 (406)
T ss_pred EEEEEeCCCHHHHH
Confidence 99999999998773
No 242
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.58 E-value=6.9e-07 Score=64.49 Aligned_cols=56 Identities=23% Similarity=0.402 Sum_probs=45.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcccc--ccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTK--NYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
--.|++.|.+|||||||++.+.+..++ .|+ -.|-++++..+..+..++++.||||-
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YP-------FTTK~i~vGhfe~~~~R~QvIDTPGl 225 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYP-------FTTKGIHVGHFERGYLRIQVIDTPGL 225 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCC-------ccccceeEeeeecCCceEEEecCCcc
Confidence 345999999999999999997754332 222 26778888888888899999999996
No 243
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.58 E-value=1.1e-07 Score=74.20 Aligned_cols=69 Identities=26% Similarity=0.356 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEe----CC-------E-----EEEEEECCCcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI----NT-------V-----RLNFWDLGGQL 80 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~-------~-----~~~i~D~~G~~ 80 (125)
.-.|+++|..++|||||++++.+.+..... +..+.+++|..+..... .+ . .+.+|||||++
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~---~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAAKE---AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccCC---CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 345999999999999999998655433221 22233455544332111 00 1 26899999999
Q ss_pred cccccccc
Q psy9521 81 ELQSLWDK 88 (125)
Q Consensus 81 ~~~~~~~~ 88 (125)
.|..++..
T Consensus 83 ~f~~~~~~ 90 (586)
T PRK04004 83 AFTNLRKR 90 (586)
T ss_pred HHHHHHHH
Confidence 99877664
No 244
>CHL00071 tufA elongation factor Tu
Probab=98.55 E-value=4.4e-07 Score=68.04 Aligned_cols=69 Identities=14% Similarity=0.171 Sum_probs=41.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccc--c-----CC--CCCCc--cccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKN--Y-----KG--MNPSK--ITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~--~-----~~--~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||++++.+..... . .. ....+ ...|+......+..++.++.+.|+||+++|
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 4788999999999999999999954321100 0 00 00000 112222222234445688899999998765
No 245
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.54 E-value=3.7e-07 Score=59.67 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+.++++++|.+|||||||++++.+
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhc
Confidence 568899999999999999999654
No 246
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.53 E-value=4.2e-07 Score=60.63 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=34.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
..++++++|.+|||||||++++.+....... .....|.+.. .+.. +..+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~----~~pg~T~~~~--~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVG----ATPGVTKSMQ--EVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceec----CCCCeEcceE--EEEe-CCCEEEEECcC
Confidence 4589999999999999999996643322111 0011222222 2233 24688999998
No 247
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.53 E-value=5.5e-07 Score=67.37 Aligned_cols=59 Identities=20% Similarity=0.168 Sum_probs=42.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
-.|+++|.+|||||||+||+.++... .-.+....|..-.|......+..|.+.||+|-+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~A----IV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~ 62 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIA----IVSDTPGVTRDRIYGDAEWLGREFILIDTGGLD 62 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeee----EeecCCCCccCCccceeEEcCceEEEEECCCCC
Confidence 35999999999999999996644321 111112255555566777778889999999986
No 248
>PRK00049 elongation factor Tu; Reviewed
Probab=98.52 E-value=4.6e-07 Score=67.68 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=41.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccccCC---------CCCC--ccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKG---------MNPS--KITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~---------~~~~--~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||+.++.........+ ...+ ...-|+......+..++..+.+.|+||+++|
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f 88 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY 88 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence 3788999999999999999999954311110000 0000 1112322222234445688999999998765
No 249
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.52 E-value=4.1e-07 Score=60.35 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=35.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
...++++++|.+|+|||||++++.+ .+. ... .....|... ..+..+ ..+.++||+|-
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~----~~~~~T~~~--~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVG----NKPGVTKGI--QWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCce-eec----CCCCEEeee--EEEEec-CCEEEEECCCC
Confidence 3457899999999999999999543 332 111 000122222 223333 45789999994
No 250
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.51 E-value=1.5e-06 Score=64.90 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=39.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~ 81 (125)
.|.++|.+|||||||++++.+..+. .......|....+..+...+ .++.++|+||..+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~-----vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~ 219 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPK-----VADYPFTTLVPNLGVVRVDDERSFVVADIPGLIE 219 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCccc-----ccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccc
Confidence 5899999999999999997543321 11122355555555555554 5699999999753
No 251
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.48 E-value=8.4e-07 Score=69.44 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=40.7
Q ss_pred EEEEEeCCCCcHHHHHHH-Hhh--ccccccCC---CCCCccccccceeeE----EEEe-----CCEEEEEEECCCccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AKT--KFTKNYKG---MNPSKITTTVGLNIG----QIDI-----NTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~~--~~~~~~~~---~~~~~~~~t~~~~~~----~~~~-----~~~~~~i~D~~G~~~~~ 83 (125)
+++++|..++|||||+.+ +.. .......+ ....+.+.+.|..+. .+.. +++.+++|||+|+++|.
T Consensus 9 Ni~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF~ 88 (600)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDFS 88 (600)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHHH
Confidence 599999999999999999 542 11110000 001111122333321 2222 25889999999999886
Q ss_pred ccccc
Q psy9521 84 SLWDK 88 (125)
Q Consensus 84 ~~~~~ 88 (125)
..+..
T Consensus 89 ~~v~~ 93 (600)
T PRK05433 89 YEVSR 93 (600)
T ss_pred HHHHH
Confidence 55444
No 252
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.48 E-value=8.2e-07 Score=63.55 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=35.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccC-C--CCCCccccccceeeEE--EEeCC--EEEEEEECCCc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYK-G--MNPSKITTTVGLNIGQ--IDINT--VRLNFWDLGGQ 79 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~-~--~~~~~~~~t~~~~~~~--~~~~~--~~~~i~D~~G~ 79 (125)
-+++|+|+|+.|+|||||++.+-+....... . .+.....++..+.... +.-++ ++++++||+|-
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGf 73 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGF 73 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-C
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCc
Confidence 4689999999999999999995432221110 0 0111222333333322 23233 78999999994
No 253
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.45 E-value=7.6e-07 Score=63.83 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=37.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
...++++++|.+|||||||++++.+....... .....|.+.. .+.. +..+.++||||-.
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~----~~~g~T~~~~--~~~~-~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTG----NRPGVTKAQQ--WIKL-GKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccC----CCCCeEEEEE--EEEe-CCcEEEEECCCcC
Confidence 35689999999999999999996553322211 0111233322 2333 2457899999974
No 254
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.44 E-value=1.2e-06 Score=66.50 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=43.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhh-ccccc------------c-CC---------CCC--CccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKT-KFTKN------------Y-KG---------MNP--SKITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~-~~~~~------------~-~~---------~~~--~~~~~t~~~~~~~~~~~ 67 (125)
.++.++++++|..++|||||+.+ +.. ..... . .+ ... .....|+...+..+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999998 431 10000 0 00 000 01112333333455666
Q ss_pred CEEEEEEECCCcccc
Q psy9521 68 TVRLNFWDLGGQLEL 82 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~ 82 (125)
+..+.+.|+||+++|
T Consensus 84 ~~~i~lIDtPGh~~f 98 (446)
T PTZ00141 84 KYYFTIIDAPGHRDF 98 (446)
T ss_pred CeEEEEEECCChHHH
Confidence 789999999999876
No 255
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.44 E-value=2.2e-06 Score=60.98 Aligned_cols=66 Identities=21% Similarity=0.192 Sum_probs=39.7
Q ss_pred EEEEEeCCCCcHHHHHHH-Hh--hcc--ccccC-C---C--CC--CccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AK--TKF--TKNYK-G---M--NP--SKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~--~~~--~~~~~-~---~--~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|+++|..++|||||+++ +. +.- ..... + . .+ .....|+......+..++.++.++||||+.++..
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 378999999999999999 43 110 00000 0 0 00 0111233333345666789999999999876644
No 256
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.44 E-value=7.9e-07 Score=63.39 Aligned_cols=58 Identities=22% Similarity=0.309 Sum_probs=36.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.+.++++++|.+|||||||++++.+....... .....|.... .+... -.+.++||||-
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~----~~~g~T~~~~--~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVG----NRPGVTKGQQ--WIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccC----CCCCeecceE--EEEeC-CCEEEEECCCc
Confidence 35689999999999999999996543221111 0111233322 23332 35789999998
No 257
>KOG1191|consensus
Probab=98.42 E-value=1.5e-06 Score=65.65 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=50.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccccccCcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDKDIRDCM 94 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~Di~~~~ 94 (125)
+..++|+++|.+|||||||+|.+.++-.. +..+....|...--..++.+|+.+.+.||+|-.+ -..|...+.
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drs----IVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe----~~~~~iE~~ 337 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRS----IVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIRE----ESNDGIEAL 337 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCce----EeCCCCCcchhhheeEeecCCeEEEEEecccccc----ccCChhHHH
Confidence 46689999999999999999996533211 1111111333322236788999999999999765 111444444
Q ss_pred CHHHHHHHHh
Q psy9521 95 GVREVKPIFN 104 (125)
Q Consensus 95 s~~~i~~~l~ 104 (125)
+.+..+..+.
T Consensus 338 gI~rA~k~~~ 347 (531)
T KOG1191|consen 338 GIERARKRIE 347 (531)
T ss_pred hHHHHHHHHh
Confidence 4444444333
No 258
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.42 E-value=2.9e-07 Score=65.08 Aligned_cols=61 Identities=25% Similarity=0.425 Sum_probs=40.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee---EEEEeCCEEEEEEECCCccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI---GQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~i~D~~G~~~ 81 (125)
..++.++++++|..|+||||++|. +.+...+-.. --++.+. .....++-.+.+||++|-+.
T Consensus 35 ~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~--------vg~~t~~~~~~~~~~~~~~l~lwDtPG~gd 99 (296)
T COG3596 35 TEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSK--------VGVGTDITTRLRLSYDGENLVLWDTPGLGD 99 (296)
T ss_pred cccCceeEEEecCCCCcHHHHHHHHHhccCceeee--------cccCCCchhhHHhhccccceEEecCCCccc
Confidence 356889999999999999999999 5433222110 0111111 12334567899999999765
No 259
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.40 E-value=6.2e-07 Score=55.64 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.1
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~ 42 (125)
+|++++|+.|+|||+|+.| ..+.|.
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~ 26 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFD 26 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCcc
Confidence 4899999999999999999 455554
No 260
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.38 E-value=9.1e-07 Score=66.10 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=19.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+||.++|.++||||||++++.+
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~ 23 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATL 23 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999654
No 261
>KOG1423|consensus
Probab=98.36 E-value=1.5e-06 Score=62.46 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=42.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
++.+.|+++|.+|||||||.|+ +..+... ....+..|..-....++-+..++.++||+|--
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~-----vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlv 131 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSA-----VSRKVHTTRHRILGIITSGETQLVFYDTPGLV 131 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCcccc-----ccccccceeeeeeEEEecCceEEEEecCCccc
Confidence 5678899999999999999999 5433221 11222244444444566667999999999964
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.35 E-value=2.4e-06 Score=64.82 Aligned_cols=70 Identities=11% Similarity=0.146 Sum_probs=43.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhc-ccc-----cc-----CC--------------CCCCccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTK-FTK-----NY-----KG--------------MNPSKITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~-~~~-----~~-----~~--------------~~~~~~~~t~~~~~~~~~~~ 67 (125)
.++.++++++|..++|||||+-+ +..- ... .+ .+ .......-|+...+..+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 36788999999999999999998 4311 000 00 00 00001112333333345556
Q ss_pred CEEEEEEECCCccccc
Q psy9521 68 TVRLNFWDLGGQLELQ 83 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~ 83 (125)
+..+++.|++|+++|.
T Consensus 84 ~~~i~liDtPGh~df~ 99 (447)
T PLN00043 84 KYYCTVIDAPGHRDFI 99 (447)
T ss_pred CEEEEEEECCCHHHHH
Confidence 7899999999998874
No 263
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.33 E-value=7e-06 Score=64.19 Aligned_cols=62 Identities=26% Similarity=0.407 Sum_probs=44.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh--ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT--KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
++.+++++|.+|||||||+|++++ ....+++| -|+.-....+..++.++++.|+||--....
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpG-------vTVEkkeg~~~~~~~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPG-------VTVEKKEGKLKYKGHEIEIVDLPGTYSLTA 65 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCC-------eeEEEEEEEEEecCceEEEEeCCCcCCCCC
Confidence 456799999999999999999764 44455542 344333335667788899999999754333
No 264
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.32 E-value=1.1e-06 Score=63.95 Aligned_cols=59 Identities=24% Similarity=0.349 Sum_probs=36.5
Q ss_pred EEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEE-----------------Ee---CCEEEEEEECCCc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQI-----------------DI---NTVRLNFWDLGGQ 79 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~-----------------~~---~~~~~~i~D~~G~ 79 (125)
|.++|.++||||||++++.+..... ..-+...+.|++|..+... .. ..+.+++||++|.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~-~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI-ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc-cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5789999999999999965432110 0011222346666554311 01 2378999999998
No 265
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.31 E-value=2.6e-06 Score=62.09 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=38.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCcc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~ 80 (125)
.++.+++.++|-++||||||++++.++...... +.-|.+-. .+..+ -.+.++||||--
T Consensus 129 ~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s--------~~PG~Tk~~q~i~~~-~~i~LlDtPGii 188 (322)
T COG1161 129 LKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTS--------NRPGTTKGIQWIKLD-DGIYLLDTPGII 188 (322)
T ss_pred CccceEEEEEcCCCCcHHHHHHHHhcccceeeC--------CCCceecceEEEEcC-CCeEEecCCCcC
Confidence 346788999999999999999997665543222 22233322 22222 348899999963
No 266
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.30 E-value=2.7e-06 Score=57.23 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...++++|.+|||||||++.+.+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999543
No 267
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.29 E-value=3.3e-06 Score=64.33 Aligned_cols=81 Identities=25% Similarity=0.387 Sum_probs=57.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC------CEEEEEEECCCcccccccccc-
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN------TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~- 88 (125)
..-.|+|+|..++|||||+.++.+. +++. ++.+..|..+++. ..++.+|-+.|...+..+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~--e~~~--------~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~ 93 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGI--EDPK--------KGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFA 93 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhcc--CCCC--------CCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhccc
Confidence 3457999999999999999998753 2333 7777777654442 167999999887666555444
Q ss_pred ---------------cccCccCHH-HHHHHHhhh
Q psy9521 89 ---------------DIRDCMGVR-EVKPIFNKN 106 (125)
Q Consensus 89 ---------------Di~~~~s~~-~i~~~l~~~ 106 (125)
|++.+..+- .++.|+..+
T Consensus 94 lt~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 94 LTPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred CCcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 777776653 666677655
No 268
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.29 E-value=5.9e-06 Score=57.25 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=17.5
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i 37 (125)
.|+++|..++|||||+.++
T Consensus 2 NvaiiGhvd~GKTTL~d~L 20 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSL 20 (222)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4899999999999999993
No 269
>PLN03127 Elongation factor Tu; Provisional
Probab=98.29 E-value=5e-06 Score=63.09 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=43.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhcccc--c-----c--CCCCCCc--cccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTK--N-----Y--KGMNPSK--ITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~--~-----~--~~~~~~~--~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||+.++.+.... + + .....++ ...|+......++.++.++.+.|+||+++|
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 468899999999999999999996421100 0 0 0000011 113333333345556688999999999766
No 270
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.29 E-value=5.7e-06 Score=63.94 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=41.3
Q ss_pred eEEEEEEeCCCCcHHHHHHH-Hh-hcccccc---C----C----CCCCccccccc----eeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AK-TKFTKNY---K----G----MNPSKITTTVG----LNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~-~~~~~~~---~----~----~~~~~~~~t~~----~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.-+|+++|..++|||||+.+ +. ....... . + ....+.+...| .....+..+++.+++|||+|+
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 44799999999999999999 43 2111000 0 0 00011111222 222356667899999999999
Q ss_pred ccccc
Q psy9521 80 LELQS 84 (125)
Q Consensus 80 ~~~~~ 84 (125)
+.|..
T Consensus 90 ~df~~ 94 (526)
T PRK00741 90 EDFSE 94 (526)
T ss_pred hhhHH
Confidence 87754
No 271
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.27 E-value=8.5e-06 Score=64.86 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=41.8
Q ss_pred EEEEEEeCCCCcHHHHHHHH-hh-ccc---cccCC--CCCC------ccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 18 FCVLILGLDNAGKTTYLESA-KT-KFT---KNYKG--MNPS------KITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i-~~-~~~---~~~~~--~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
-+|+++|..++|||||++++ .. ... .+... ...+ ....|+......+..++.++.+|||+|+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 46999999999999999994 31 111 00000 0000 111233333446667789999999999987654
No 272
>KOG0082|consensus
Probab=98.25 E-value=5.8e-06 Score=60.63 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=29.3
Q ss_pred cccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 55 TTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 55 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
||.|+.-..+..++..+.++|++||.--|..|..
T Consensus 181 ~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWih 214 (354)
T KOG0082|consen 181 PTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIH 214 (354)
T ss_pred CcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHH
Confidence 6888887788889999999999999877777777
No 273
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.23 E-value=1.5e-05 Score=58.37 Aligned_cols=86 Identities=15% Similarity=0.304 Sum_probs=56.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hhcccccc--CCCCCCccccccceeeEEEEe--CC--EEEEEEECCCcccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KTKFTKNY--KGMNPSKITTTVGLNIGQIDI--NT--VRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~--~~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~D~~G~~~~~~~~ 86 (125)
+..++.|+++|++|.|||||++.+ ......+. .+..+..+.||+.+......+ ++ +++++.||+|--.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD----- 94 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGD----- 94 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccc-----
Confidence 368899999999999999999994 43222221 122333356777777654333 34 7899999998542
Q ss_pred cccccCccCHHHHHHHHhhh
Q psy9521 87 DKDIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~Di~~~~s~~~i~~~l~~~ 106 (125)
-+.+..+++-|..+++.-
T Consensus 95 --~idNs~~we~I~~yI~~q 112 (373)
T COG5019 95 --FIDNSKCWEPIVDYIDDQ 112 (373)
T ss_pred --cccccccHHHHHHHHHHH
Confidence 345567777776666553
No 274
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.20 E-value=5.1e-06 Score=56.30 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=35.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc-cccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
...-|+++|.+|||||||++.+.++.. .... .....|.-.++..+ ++ .+.+.|+||
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtS----ktPGrTq~iNff~~--~~-~~~lVDlPG 79 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTS----KTPGRTQLINFFEV--DD-ELRLVDLPG 79 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecC----CCCCccceeEEEEe--cC-cEEEEeCCC
Confidence 445699999999999999999655321 1111 11114444555433 22 278999998
No 275
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.17 E-value=6.1e-06 Score=53.81 Aligned_cols=57 Identities=19% Similarity=0.306 Sum_probs=35.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
....+++++|.+|+|||||++.+.+....... .....|..... +.. +..+.+.||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~----~~~~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVG----NVPGTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccccc----CCCCcccceEE--EEe-cCCEEEEECCC
Confidence 45688999999999999999996543321110 00113333322 222 24588999998
No 276
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.16 E-value=1.8e-05 Score=61.25 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=42.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hh-hcccccc---C--------CCCCCccccccceee----EEEEeCCEEEEEEECCC
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AK-TKFTKNY---K--------GMNPSKITTTVGLNI----GQIDINTVRLNFWDLGG 78 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~-~~~~~~~---~--------~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G 78 (125)
+..+|+++|..++|||||+.+ +. ....... . -....+.+...|+.+ ..+..++..+.+|||+|
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 455799999999999999999 43 2222110 0 001111122233333 24566789999999999
Q ss_pred cccccc
Q psy9521 79 QLELQS 84 (125)
Q Consensus 79 ~~~~~~ 84 (125)
++.|..
T Consensus 90 ~~df~~ 95 (527)
T TIGR00503 90 HEDFSE 95 (527)
T ss_pred hhhHHH
Confidence 987654
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.13 E-value=6.1e-06 Score=65.98 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=40.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhhc-ccc----------ccCCCCCCccccccceeeE----EEEeCCEEEEEEECCCc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTK-FTK----------NYKGMNPSKITTTVGLNIG----QIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~-~~~----------~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~D~~G~ 79 (125)
...+|+++|..++|||||+.+ +... ... .+. ....+...|+..... .++.+++.+.+|||+|+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~-~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFD-EQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCC-HHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 345799999999999999999 5420 000 000 000011234443322 23445689999999999
Q ss_pred ccccc
Q psy9521 80 LELQS 84 (125)
Q Consensus 80 ~~~~~ 84 (125)
.+|..
T Consensus 97 ~~f~~ 101 (720)
T TIGR00490 97 VDFGG 101 (720)
T ss_pred cccHH
Confidence 88753
No 278
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.13 E-value=9.5e-06 Score=59.94 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
++|.++|.++||||||++++.+.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~ 25 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKA 25 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999997643
No 279
>PRK12289 GTPase RsgA; Reviewed
Probab=98.11 E-value=1.9e-05 Score=58.21 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=22.8
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..+++.+..+ .++++|.+|||||||+|.+.+
T Consensus 164 ~eL~~~L~~k---i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 164 EALLEQLRNK---ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred HHHhhhhccc---eEEEEeCCCCCHHHHHHHHcC
Confidence 3445555332 289999999999999999653
No 280
>KOG2655|consensus
Probab=98.09 E-value=4.4e-05 Score=56.18 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHhhhc-cCceEEEEEEeCCCCcHHHHHHH-HhhccccccC-CCCCCccccccceeeEEEEe--CC--EEEEEEECCCc
Q psy9521 7 GFYKYML-RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYK-GMNPSKITTTVGLNIGQIDI--NT--VRLNFWDLGGQ 79 (125)
Q Consensus 7 ~~~~~~~-~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~D~~G~ 79 (125)
.+++..- +.-++.++++|++|.|||||++. +...+..+.. ..+......|+.+....... ++ +++++.||+|-
T Consensus 10 q~~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 10 QVHRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred HHHHHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 3444443 35789999999999999999999 4444433211 11222222355555544333 34 77899999985
Q ss_pred ccccccccccccCccCHHHHHHHHhh
Q psy9521 80 LELQSLWDKDIRDCMGVREVKPIFNK 105 (125)
Q Consensus 80 ~~~~~~~~~Di~~~~s~~~i~~~l~~ 105 (125)
-. -+.|..+|+-+..+++.
T Consensus 90 GD-------~vdns~~w~pi~~yi~~ 108 (366)
T KOG2655|consen 90 GD-------AVDNSNCWRPIVNYIDS 108 (366)
T ss_pred cc-------cccccccchhhhHHHHH
Confidence 42 33445566555554443
No 281
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.08 E-value=7.6e-06 Score=58.37 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
|.++|.++||||||++++.+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~ 21 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKA 21 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCC
Confidence 468999999999999997653
No 282
>PTZ00258 GTP-binding protein; Provisional
Probab=98.08 E-value=1.3e-05 Score=59.83 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...++|.++|.+|||||||++.+.+.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~ 44 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQ 44 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcC
Confidence 35678999999999999999997643
No 283
>KOG3905|consensus
Probab=98.08 E-value=8.5e-06 Score=59.23 Aligned_cols=80 Identities=21% Similarity=0.267 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC------CEEEEEEECCCcccccccccc--
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN------TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.-.|+|+|+.++|||||+.++++.- .+. +..|..|..+.+. -.++.+|-+.|......+...
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e--~~K--------kgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSE--TVK--------KGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhccc--ccC--------CCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 3459999999999999999998642 333 5666666544442 278999998887655554444
Q ss_pred --------------cccCc-cCHHHHHHHHhhh
Q psy9521 89 --------------DIRDC-MGVREVKPIFNKN 106 (125)
Q Consensus 89 --------------Di~~~-~s~~~i~~~l~~~ 106 (125)
|++++ .-++.++.|....
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl 154 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVL 154 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHH
Confidence 88888 5567777887755
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.08 E-value=2.3e-05 Score=55.06 Aligned_cols=69 Identities=13% Similarity=0.099 Sum_probs=38.9
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCC----ccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPS----KITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
..++..+.+ -.++++|.+|||||||++++.+...... +..+. -...|.......+ .+ -.++||||-..
T Consensus 112 ~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t-~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG~~~ 183 (245)
T TIGR00157 112 KELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQV-NDISSKLGLGKHTTTHVELFHF--HG--GLIADTPGFNE 183 (245)
T ss_pred HHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccc-cceeccCCCCCCcCCceEEEEc--CC--cEEEeCCCccc
Confidence 345555433 2589999999999999999654322111 10000 0113444433333 22 26999999754
Q ss_pred c
Q psy9521 82 L 82 (125)
Q Consensus 82 ~ 82 (125)
+
T Consensus 184 ~ 184 (245)
T TIGR00157 184 F 184 (245)
T ss_pred c
Confidence 4
No 285
>PRK12288 GTPase RsgA; Reviewed
Probab=98.06 E-value=2.1e-05 Score=57.95 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=38.8
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCcc----ccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKI----TTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
..++..+..+ -++++|.+|||||||+|++.+...... +..+... ..|....+..+.. + ..+.||||-..
T Consensus 197 deL~~~L~~k---i~~~vG~sgVGKSTLiN~Ll~~~~~~t-~~is~~~~rGrHTT~~~~l~~l~~-~--~~liDTPGir~ 269 (347)
T PRK12288 197 EELEAALTGR---ISIFVGQSGVGKSSLINALLPEAEILV-GDVSDNSGLGQHTTTAARLYHFPH-G--GDLIDSPGVRE 269 (347)
T ss_pred HHHHHHHhhC---CEEEECCCCCCHHHHHHHhccccceee-ccccCcCCCCcCceeeEEEEEecC-C--CEEEECCCCCc
Confidence 4455555432 279999999999999999654322111 1001100 1233333322211 2 24899999876
Q ss_pred ccc
Q psy9521 82 LQS 84 (125)
Q Consensus 82 ~~~ 84 (125)
+.-
T Consensus 270 ~~l 272 (347)
T PRK12288 270 FGL 272 (347)
T ss_pred ccC
Confidence 553
No 286
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.00 E-value=1.6e-05 Score=57.65 Aligned_cols=57 Identities=23% Similarity=0.398 Sum_probs=40.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcccc--ccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTK--NYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
-...++++|.++||||||++.+++-.++ +|+ -.|+...-.-+..++.++++.|+||-
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~-------FTTl~~VPG~l~Y~ga~IQild~Pgi 120 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYP-------FTTLEPVPGMLEYKGAQIQLLDLPGI 120 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccC-------ceecccccceEeecCceEEEEcCccc
Confidence 4678999999999999999997764332 221 12333333356778999999999975
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.00 E-value=2.6e-05 Score=61.50 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=37.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc--cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK--FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.++|+++|.+|+||||++|.|.++ +.... .. ..|..........++..+.++||+|-..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss-----~~-~~TTr~~ei~~~idG~~L~VIDTPGL~d 178 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDA-----FG-MGTTSVQEIEGLVQGVKIRVIDTPGLKS 178 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccC-----CC-CCceEEEEEEEEECCceEEEEECCCCCc
Confidence 468999999999999999995443 22110 00 0222222122344678999999999754
No 288
>KOG3886|consensus
Probab=97.99 E-value=2.1e-06 Score=59.57 Aligned_cols=59 Identities=24% Similarity=0.396 Sum_probs=39.8
Q ss_pred eEEEEEEeCCCCcHHHHHHH-Hhhc--cccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCcccc
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AKTK--FTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLEL 82 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~ 82 (125)
.-||+++|.+|+|||++--. ..+. +.... ..+|+.+....+..-| ..+++||.+||+.+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~r-------lg~tidveHsh~RflGnl~LnlwDcGgqe~f 66 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRR-------LGATIDVEHSHVRFLGNLVLNLWDCGGQEEF 66 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhc-------cCCcceeeehhhhhhhhheeehhccCCcHHH
Confidence 34799999999999998665 3221 11111 1266666655554444 89999999999843
No 289
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=4.9e-05 Score=58.07 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=66.1
Q ss_pred EEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC---CEEEEEEECCCcccccccccc--------
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN---TVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
|+++|.-.-|||||+-.+.+...... .+...+ .-+|-. .+..+ ...+.+.|||||+.|..++..
T Consensus 8 VtimGHVDHGKTtLLD~IR~t~Va~~--EaGGIT-QhIGA~--~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 8 VTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGIT-QHIGAY--QVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred EEEeCcccCCccchhhhHhcCccccc--cCCcee-eEeeeE--EEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 88999999999999999875443321 122222 223322 33332 368999999999999988877
Q ss_pred -----------------------------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeeccC
Q psy9521 89 -----------------------------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSALT 125 (125)
Q Consensus 89 -----------------------------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~~ 125 (125)
|.++...+....+..+.-...+..++...++++||++
T Consensus 83 ILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 83 ILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred EEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccC
Confidence 7775554443333333221344566889999999986
No 290
>KOG1547|consensus
Probab=97.88 E-value=0.00011 Score=51.45 Aligned_cols=66 Identities=18% Similarity=0.295 Sum_probs=43.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhccccc-cCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKN-YKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQ 79 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~-~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~ 79 (125)
..-+++|+|+|.+|.|||||++. ........ .......++..|+.+... .+.-++ .++++.||+|=
T Consensus 43 ~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred ccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 35789999999999999999998 55443332 112333344455555443 334455 56888999984
No 291
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=5.9e-05 Score=56.16 Aligned_cols=69 Identities=16% Similarity=0.308 Sum_probs=43.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hh--hcccc----ccC------CCC-------------CCccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AK--TKFTK----NYK------GMN-------------PSKITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~--~~~~~----~~~------~~~-------------~~~~~~t~~~~~~~~~~~ 67 (125)
.++.++++++|+..+|||||+-| +. +...+ ++. +.. ..+..-|+...+..++.+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 46889999999999999999999 54 22211 010 000 000112333333355666
Q ss_pred CEEEEEEECCCcccc
Q psy9521 68 TVRLNFWDLGGQLEL 82 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~ 82 (125)
.+.+++.|++|+..|
T Consensus 84 k~~~tIiDaPGHrdF 98 (428)
T COG5256 84 KYNFTIIDAPGHRDF 98 (428)
T ss_pred CceEEEeeCCchHHH
Confidence 789999999998665
No 292
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.87 E-value=3.7e-05 Score=58.56 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.9
Q ss_pred hhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 10 KYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 10 ~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+...++..+.|.++|.-..|||||+..+.+
T Consensus 27 ~~~~~~~~~~ig~~GHVDhGKTtLv~aLtg 56 (460)
T PTZ00327 27 EVISRQATINIGTIGHVAHGKSTVVKALSG 56 (460)
T ss_pred HHccCCCcEEEEEEccCCCCHHHHHHHHhC
Confidence 334667899999999999999999999764
No 293
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.86 E-value=6.9e-05 Score=53.81 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-.++++|.+|||||||++.+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~ 184 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPD 184 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhch
Confidence 46999999999999999996543
No 294
>PRK12739 elongation factor G; Reviewed
Probab=97.84 E-value=6.9e-05 Score=59.79 Aligned_cols=69 Identities=19% Similarity=0.090 Sum_probs=42.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhh--cc--ccccCC------CCC--CccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKT--KF--TKNYKG------MNP--SKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~--~~--~~~~~~------~~~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
+-.+|+++|..++|||||+++ +.. .- ...... ... ....-|+......+..++.++.++||+|+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 345699999999999999999 431 10 000000 000 01113333334456678899999999998765
Q ss_pred cc
Q psy9521 83 QS 84 (125)
Q Consensus 83 ~~ 84 (125)
..
T Consensus 87 ~~ 88 (691)
T PRK12739 87 TI 88 (691)
T ss_pred HH
Confidence 33
No 295
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.82 E-value=4.1e-05 Score=56.66 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=34.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccC-CCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYK-GMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
..+++++|.+|||||||++++.+....... .........|.+.. .+..+ -.+.++||||-..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~--~~~~~-~~~~l~DtPG~~~ 216 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLI--EIPLD-DGHSLYDTPGIIN 216 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEE--EEEeC-CCCEEEECCCCCC
Confidence 358999999999999999995432211000 00111111233322 33332 2356999999753
No 296
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.82 E-value=7.7e-05 Score=49.57 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=32.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCC--EEEEEEEC-CCc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINT--VRLNFWDL-GGQ 79 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~D~-~G~ 79 (125)
||++.|++|+||||+++++-.....+.. +.-|+....+.-++ +-+.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~--------~v~Gf~t~evr~~g~r~GF~iv~l~~g~ 56 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGL--------PVGGFYTEEVRENGRRIGFDIVDLNSGE 56 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCG--------GEEEEEEEEEETTSSEEEEEEEET-TS-
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCC--------ccceEEeecccCCCceEEEEEEECcCCC
Confidence 6899999999999999994444433222 44455444444333 44667777 444
No 297
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.80 E-value=0.00011 Score=48.43 Aligned_cols=55 Identities=20% Similarity=0.235 Sum_probs=37.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCC--EEEEEEECC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINT--VRLNFWDLG 77 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~D~~ 77 (125)
+..+||.+.|.+||||||++.++.+....+.. .--|+-..++...+ +-|.+.|++
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~--------kvgGf~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGY--------KVGGFITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCc--------eeeeEEeeeeecCCeEeeeEEEEcc
Confidence 35689999999999999999997655544421 22233333444444 557788877
No 298
>PRK13796 GTPase YqeH; Provisional
Probab=97.79 E-value=7.5e-05 Score=55.38 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
..++.++|.+|||||||+|++.
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~ 181 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRII 181 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHH
Confidence 4579999999999999999954
No 299
>PRK12740 elongation factor G; Reviewed
Probab=97.74 E-value=0.00018 Score=57.18 Aligned_cols=62 Identities=16% Similarity=0.221 Sum_probs=39.0
Q ss_pred EeCCCCcHHHHHHHH-hh-ccc-c--ccCC--CC------CCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 23 LGLDNAGKTTYLESA-KT-KFT-K--NYKG--MN------PSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 23 ~G~~~~GKTsl~~~i-~~-~~~-~--~~~~--~~------~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|..++|||||+.++ .. ... . +..+ .. ......|++.....+..+++.+.+||++|+..+..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~ 75 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTG 75 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHH
Confidence 589999999999994 32 110 0 0000 00 01122455555566777889999999999976543
No 300
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.73 E-value=0.00011 Score=50.90 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=38.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHH-hh--ccccccCCCCCCccccccceeeEEEEe---CCEEEEEEECCCccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESA-KT--KFTKNYKGMNPSKITTTVGLNIGQIDI---NTVRLNFWDLGGQLE 81 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i-~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~D~~G~~~ 81 (125)
-.-|.++|+.++|||+|+|++ .. .|.-.. .....|.|+-...... .+..+.+.||+|-..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~-----~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~ 72 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMD-----TSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecC-----CCCCCccceEEEeccccCCCcceEEEEecCCcCc
Confidence 344889999999999999995 44 443211 1112455655433222 357899999999753
No 301
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.70 E-value=4e-05 Score=47.60 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|++.|.+||||||+.+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999997654
No 302
>KOG1145|consensus
Probab=97.67 E-value=0.00018 Score=55.48 Aligned_cols=65 Identities=18% Similarity=0.252 Sum_probs=44.4
Q ss_pred EEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
|.++|.-.=|||||+-.+.+...... .....+ .-+|-..-++. +|-++++.||||+..|..|+..
T Consensus 156 VTiMGHVDHGKTTLLD~lRks~VAA~--E~GGIT-QhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaR 220 (683)
T KOG1145|consen 156 VTIMGHVDHGKTTLLDALRKSSVAAG--EAGGIT-QHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRAR 220 (683)
T ss_pred EEEeecccCChhhHHHHHhhCceehh--hcCCcc-ceeceEEEecC-CCCEEEEecCCcHHHHHHHHhc
Confidence 78999999999999999875433221 111111 22333222333 5789999999999999988776
No 303
>PRK00098 GTPase RsgA; Reviewed
Probab=97.67 E-value=0.00013 Score=52.61 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|.+|||||||++.+.+.
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~ 187 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPD 187 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999996543
No 304
>PRK00007 elongation factor G; Reviewed
Probab=97.63 E-value=0.0002 Score=57.20 Aligned_cols=66 Identities=20% Similarity=0.114 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCCcHHHHHHH-Hh--hcc--ccccCC----CC--C--CccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 17 EFCVLILGLDNAGKTTYLES-AK--TKF--TKNYKG----MN--P--SKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~-i~--~~~--~~~~~~----~~--~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
-.+|+++|..++|||||+++ +. +.- ...... .. . .....|+......+..++..+.+.||+|+..|
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f 88 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF 88 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence 44799999999999999999 43 211 000000 00 0 01112332223356667899999999998765
No 305
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.62 E-value=9.6e-05 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
|++++|..|+|||+|++.+.+...
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ 26 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDT 26 (148)
T ss_pred eeEEecccccCchhHHHHhhcchh
Confidence 699999999999999999876543
No 306
>PRK08118 topology modulation protein; Reviewed
Probab=97.59 E-value=6.3e-05 Score=49.88 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
||+|+|++|||||||...+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999976543
No 307
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.59 E-value=0.00026 Score=49.09 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.....|+++|.+|+|||+|++.+.+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~ 62 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKN 62 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 45667999999999999999985543
No 308
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00025 Score=52.17 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=73.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhccc--cc------c----CCCC---------------CCccccccceeeEEEE
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFT--KN------Y----KGMN---------------PSKITTTVGLNIGQID 65 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~--~~------~----~~~~---------------~~~~~~t~~~~~~~~~ 65 (125)
.+..++++.+|.-.=|||||+-| +.+... +. . .+.. ..+-.-|+.+-|..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 35678999999999999999999 553111 00 0 0000 1111246666666666
Q ss_pred eCCEEEEEEECCCccccc-ccccc-------------------------------------------ccc--CccCHHHH
Q psy9521 66 INTVRLNFWDLGGQLELQ-SLWDK-------------------------------------------DIR--DCMGVREV 99 (125)
Q Consensus 66 ~~~~~~~i~D~~G~~~~~-~~~~~-------------------------------------------Di~--~~~s~~~i 99 (125)
.++.+|-+-||||+|.|. .|..- |+. +..-|++|
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I 162 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAI 162 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHH
Confidence 678999999999999873 33322 664 46789999
Q ss_pred HHHHhhhcccccCCCCeEEEEeecc
Q psy9521 100 KPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 100 ~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
+.-+..+ ...+...+...+++||+
T Consensus 163 ~~dy~~f-a~~L~~~~~~~IPiSAl 186 (431)
T COG2895 163 VADYLAF-AAQLGLKDVRFIPISAL 186 (431)
T ss_pred HHHHHHH-HHHcCCCcceEEechhc
Confidence 8544433 36677788899999996
No 309
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.57 E-value=6.9e-05 Score=49.45 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|.+|||||||+|.+.+.
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999996543
No 310
>KOG1707|consensus
Probab=97.52 E-value=0.00051 Score=53.27 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=57.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee--EEEEeCC--EEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
.++-+.|.|+|+.++|||.+++. +...+..++. .+....+ ..+...+ ..+.+-|.+-. ....+...
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~--------~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~k 492 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNT--------GTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSK 492 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccc--------cCCCCceeeeeeeeccccceEEEeecCcc-ccccccCc
Confidence 35667899999999999999999 5444444332 2222222 1222222 23334443322 11111111
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEeecc
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVSAL 124 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA~ 124 (125)
|.+++.||+-+...++.. ... ...||+.+.|+
T Consensus 493 e~~cDv~~~~YDsS~p~sf~~~a~v~~~~---~~~-~~~Pc~~va~K 535 (625)
T KOG1707|consen 493 EAACDVACLVYDSSNPRSFEYLAEVYNKY---FDL-YKIPCLMVATK 535 (625)
T ss_pred cceeeeEEEecccCCchHHHHHHHHHHHh---hhc-cCCceEEEeec
Confidence 999999999998877765 333 66677777665
No 311
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.51 E-value=9.2e-05 Score=49.68 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
||+++|++|+||||+..++.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999976654
No 312
>PRK07261 topology modulation protein; Provisional
Probab=97.48 E-value=0.00011 Score=48.90 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
||+++|.+|+|||||...+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6999999999999999986543
No 313
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=9.7e-05 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.++++|++|+|||||++.++.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHC
Confidence 489999999999999999874
No 314
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.46 E-value=0.0005 Score=49.58 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-.+++|.+|||||||+|++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 588999999999999999653
No 315
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.46 E-value=0.0043 Score=47.00 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=22.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.-++.|.++|+.++|||||++++.+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhh
Confidence 34788999999999999999995443
No 316
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.45 E-value=0.00012 Score=46.58 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=17.4
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
|+++|++||||||++.++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999954
No 317
>PRK06547 hypothetical protein; Provisional
Probab=97.43 E-value=0.00029 Score=46.98 Aligned_cols=37 Identities=27% Similarity=0.253 Sum_probs=30.2
Q ss_pred hHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+++.+-..+.......|++.|.+|+||||+...+...
T Consensus 2 ~~~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 2 LVALIAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred hHHHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3566677777778888999999999999999997543
No 318
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.36 E-value=0.00066 Score=50.40 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+|+-++|.+++|||||++.+++..
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~ 26 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLL 26 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCC
Confidence 689999999999999999976543
No 319
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.35 E-value=0.00021 Score=47.05 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-+.++|.+|+|||||+.++...+.
T Consensus 3 vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999654443
No 320
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00017 Score=50.47 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
+.++|++|||||||++-+.+
T Consensus 32 vsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999765
No 321
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.34 E-value=0.00016 Score=47.43 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
||++.|.+++|||||++.+..
T Consensus 1 rI~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999754
No 322
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.28 E-value=0.00029 Score=44.58 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|+.|+|||||++.+.+...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 589999999999999999876544
No 323
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.27 E-value=0.00027 Score=45.29 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++++|++|+|||||++.+...++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999766554
No 324
>PRK06217 hypothetical protein; Validated
Probab=97.26 E-value=0.00029 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+|+++|.+|+||||+..++...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999997654
No 325
>KOG1486|consensus
Probab=97.25 E-value=0.00077 Score=47.74 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccc-cccceeeEEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKIT-TTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.-+-+++++|-+.||||||+..+....++. ..++ .|+.+.-..+..++..+++.|+||-
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~Sea------A~yeFTTLtcIpGvi~y~ga~IQllDLPGI 119 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEA------ASYEFTTLTCIPGVIHYNGANIQLLDLPGI 119 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhh------hceeeeEEEeecceEEecCceEEEecCccc
Confidence 356789999999999999999965432211 0111 3333333456778899999999986
No 326
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.00087 Score=49.55 Aligned_cols=60 Identities=27% Similarity=0.362 Sum_probs=37.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh-cc-ccccCCCCCCccccccceeeEE---------EEe--C---CEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT-KF-TKNYKGMNPSKITTTVGLNIGQ---------IDI--N---TVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~-~~-~~~~~~~~~~~~~~t~~~~~~~---------~~~--~---~~~~~i~D~~G~ 79 (125)
.+++-++|.++||||||++.++. .- ..+|+ --.+.|.+|..+-. +.. + ...+++.|++|-
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYP---F~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGL 77 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYP---FCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGL 77 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCC---cccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEeccc
Confidence 46799999999999999999543 21 23332 33334555544321 111 1 267899999885
No 327
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.23 E-value=0.00039 Score=46.44 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.-+.++|.+|+|||||+.++...+
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHH
Confidence 358899999999999999955443
No 328
>KOG3859|consensus
Probab=97.22 E-value=0.0025 Score=45.77 Aligned_cols=68 Identities=22% Similarity=0.324 Sum_probs=44.2
Q ss_pred HHhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe--CC--EEEEEEECCCc
Q psy9521 8 FYKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI--NT--VRLNFWDLGGQ 79 (125)
Q Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~D~~G~ 79 (125)
+-+.....-.++|+-+|+.|.|||||+.. ++..|..+ +..-..|++.....+.+. .+ +++++.||.|=
T Consensus 33 V~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~----p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 33 VNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESE----PSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred HHHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCC----CCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 33444555678899999999999999999 55555432 222233555544433333 23 67889999874
No 329
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.20 E-value=0.00036 Score=43.34 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
|++.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999997655
No 330
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.20 E-value=0.0004 Score=39.25 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|++.|.+|+|||++.+.+...+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999987665
No 331
>KOG1489|consensus
Probab=97.20 E-value=0.0018 Score=47.12 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=33.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~ 80 (125)
.+=++|.+++|||||++.+....+ ..|. .-...|.+| ++..++ .++.+-|.||--
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~Ya---FTTL~P~iG----~v~yddf~q~tVADiPGiI 255 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYA---FTTLRPHIG----TVNYDDFSQITVADIPGII 255 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccc---eeeeccccc----eeeccccceeEeccCcccc
Confidence 356899999999999999764333 2221 111124444 333444 448888888853
No 332
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.19 E-value=0.00071 Score=42.34 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=25.7
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..+...+.....-.+++.|++|+|||++++.+.+..
T Consensus 8 ~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 8 EALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444345569999999999999999965443
No 333
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.19 E-value=0.0003 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|||||||++.+.+-
T Consensus 32 ~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999998753
No 334
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.18 E-value=0.00033 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|||||||++-+.+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999764
No 335
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.18 E-value=0.00033 Score=47.92 Aligned_cols=21 Identities=38% Similarity=0.506 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|||||||+|-+.+
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhc
Confidence 489999999999999998765
No 336
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.17 E-value=0.00047 Score=42.70 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|++|+|||+++..+.....
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccC
Confidence 589999999999999999654433
No 337
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00054 Score=48.54 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=18.1
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
++++|++||||||+++.++.
T Consensus 30 ~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 30 LVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEECCCCCcHHHHHHHHhc
Confidence 78999999999999998874
No 338
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.16 E-value=0.00054 Score=46.76 Aligned_cols=28 Identities=21% Similarity=0.167 Sum_probs=22.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++..-|.++|++|+|||||++.+.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556689999999999999999765443
No 339
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.15 E-value=0.00041 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+.+
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 48999999999999999976544
No 340
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.00043 Score=43.17 Aligned_cols=20 Identities=30% Similarity=0.436 Sum_probs=17.7
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
|++.|++|+|||++++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999543
No 341
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.12 E-value=0.00045 Score=51.57 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=26.9
Q ss_pred cccceeeEEEEe-CCEEEEEEECCCcccccccccc
Q psy9521 55 TTVGLNIGQIDI-NTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 55 ~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
+|.|+.-..+.. .+..+.++|++||..-|..|..
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~ 255 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIH 255 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhhHHH
Confidence 466666666777 7899999999999888888887
No 342
>COG2262 HflX GTPases [General function prediction only]
Probab=97.12 E-value=0.0049 Score=46.13 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=37.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQ 79 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~ 79 (125)
..|.++|-.|+|||||+|++.+.-.... +..-.|..-....+.+. +..+-+-||-|=
T Consensus 193 p~vaLvGYTNAGKSTL~N~LT~~~~~~~-----d~LFATLdpttR~~~l~~g~~vlLtDTVGF 250 (411)
T COG2262 193 PLVALVGYTNAGKSTLFNALTGADVYVA-----DQLFATLDPTTRRIELGDGRKVLLTDTVGF 250 (411)
T ss_pred CeEEEEeeccccHHHHHHHHhccCeecc-----ccccccccCceeEEEeCCCceEEEecCccC
Confidence 4599999999999999999764322211 11114444444456665 478888999884
No 343
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.11 E-value=0.00044 Score=46.39 Aligned_cols=22 Identities=18% Similarity=0.507 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++|+|||||++.+.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5899999999999999997543
No 344
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.11 E-value=0.00059 Score=46.54 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
++...|.+.|++|||||||.+.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999976655
No 345
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.09 E-value=0.00069 Score=45.91 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.--|+++|++|+|||||+..+.+.++
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 34589999999999999999765543
No 346
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.07 E-value=0.0013 Score=53.79 Aligned_cols=23 Identities=17% Similarity=0.206 Sum_probs=19.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hh
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AK 38 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~ 38 (125)
+--+|+++|..++|||||+.+ +.
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~ 41 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVA 41 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 334699999999999999999 54
No 347
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.00049 Score=48.06 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|+|||||++.+++
T Consensus 32 ~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 389999999999999999886
No 348
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.07 E-value=0.00047 Score=50.87 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
++++|++||||||+++.|.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999875
No 349
>PRK14530 adenylate kinase; Provisional
Probab=97.07 E-value=0.00055 Score=46.99 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+++|++||||||+.+++...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999986543
No 350
>PRK03839 putative kinase; Provisional
Probab=97.07 E-value=0.00057 Score=45.51 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+++|.+|+||||+..++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999986543
No 351
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.06 E-value=0.00054 Score=45.49 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999996543
No 352
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.00058 Score=46.09 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=|+++|++|||||||++++...+
T Consensus 6 ~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 38999999999999999964444
No 353
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.05 E-value=0.00073 Score=37.54 Aligned_cols=19 Identities=37% Similarity=0.649 Sum_probs=17.2
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
.++.|+.|+|||||+..+.
T Consensus 26 tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999998854
No 354
>PRK14532 adenylate kinase; Provisional
Probab=97.05 E-value=0.00055 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+++|++|+||||+..++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999997543
No 355
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.04 E-value=0.00075 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+++.++|+.|+|||||++++.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998443
No 356
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.04 E-value=0.00054 Score=45.57 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=17.9
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
.|+++|.+||||||++.++.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999865
No 357
>PRK08233 hypothetical protein; Provisional
Probab=97.03 E-value=0.0008 Score=44.52 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-|++.|.+|+|||||..++...+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578889999999999999765553
No 358
>PHA00729 NTP-binding motif containing protein
Probab=97.02 E-value=0.0015 Score=45.39 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=25.9
Q ss_pred HHHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 5 VSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 5 ~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.....+.+....-..|++.|.+|+|||+|..++..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHH
Confidence 34444545444556899999999999999999644
No 359
>KOG1532|consensus
Probab=97.02 E-value=0.00078 Score=48.23 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.0
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
..++.+-|+|+|..|+|||||++|+.
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~ 40 (366)
T KOG1532|consen 15 AIQRPVIILVVGMAGSGKTTFMQRLN 40 (366)
T ss_pred cccCCcEEEEEecCCCCchhHHHHHH
Confidence 45678889999999999999999965
No 360
>PRK14531 adenylate kinase; Provisional
Probab=97.02 E-value=0.00069 Score=45.38 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+|+++|++|+||||+..++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999986543
No 361
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.01 E-value=0.00071 Score=45.62 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEeCCCCcHHHHHHHHhhcccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTK 43 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~ 43 (125)
+.++|++|+|||||++.+.++..+
T Consensus 35 LgiVGESGSGKtTLL~~is~rl~p 58 (258)
T COG4107 35 LGIVGESGSGKTTLLKCISGRLTP 58 (258)
T ss_pred EEEEecCCCcHHhHHHHHhcccCC
Confidence 678999999999999998876653
No 362
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00056 Score=47.29 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.0
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
-+++|++|||||||++.++
T Consensus 36 TAlIGPSGcGKST~LR~lN 54 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 5789999999999999865
No 363
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.99 E-value=0.00072 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|++.|++|+|||+|++.+....
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999865433
No 364
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.99 E-value=0.00084 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.+..-|+++|++|||||||++.+.
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~ 34 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMR 34 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHH
Confidence 345568899999999999999964
No 365
>PRK02496 adk adenylate kinase; Provisional
Probab=96.98 E-value=0.00081 Score=44.91 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+++++|++|+||||+...+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~ 24 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEH 24 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999986543
No 366
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.98 E-value=0.00072 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++++|+.|||||||++.+.+-..
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 78999999999999999776444
No 367
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.0011 Score=51.06 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=22.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTK 43 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~ 43 (125)
-=||.++|.+||||||+++-+.+.+..
T Consensus 364 GEkvAIlG~SGsGKSTllqLl~~~~~~ 390 (573)
T COG4987 364 GEKVAILGRSGSGKSTLLQLLAGAWDP 390 (573)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhccCC
Confidence 347999999999999999998766553
No 368
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.98 E-value=0.00077 Score=45.13 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=18.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHH
Q psy9521 17 EFCVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i 37 (125)
--.++++|+.|+|||||++.+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 346899999999999999985
No 369
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.96 E-value=0.00063 Score=45.54 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+++|.+|+||||+...+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999997654
No 370
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.96 E-value=0.00081 Score=46.87 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..++|+++|++||||||+..++...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999996543
No 371
>KOG2484|consensus
Probab=96.94 E-value=0.0014 Score=48.85 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=37.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceee--EEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNI--GQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~ 79 (125)
+..+++-|+|-++|||||+++.+..+.....- ++-|++- ..+..+ -.+.+.|.+|-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg--------~~pGvT~smqeV~Ld-k~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVG--------NVPGVTRSMQEVKLD-KKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCC--------CCccchhhhhheecc-CCceeccCCce
Confidence 67899999999999999999997655443332 3333332 233332 45668887774
No 372
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.94 E-value=0.00068 Score=46.35 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
||+++|++||||||+..++...
T Consensus 1 rI~i~G~pGsGKsT~a~~La~~ 22 (210)
T TIGR01351 1 RLVLLGPPGSGKGTQAKRIAEK 22 (210)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999997543
No 373
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.93 E-value=0.00096 Score=46.83 Aligned_cols=23 Identities=43% Similarity=0.706 Sum_probs=20.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i 37 (125)
...++++|+|.+|+|||+|+..+
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~l 33 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSL 33 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHH
Confidence 35678999999999999999883
No 374
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.93 E-value=0.00096 Score=45.66 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Confidence 58999999999999999977653
No 375
>KOG1491|consensus
Probab=96.92 E-value=0.0021 Score=47.19 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..+|+-++|.++||||||++.+++
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~ 42 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTK 42 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhc
Confidence 567999999999999999999653
No 376
>PTZ00416 elongation factor 2; Provisional
Probab=96.92 E-value=0.0022 Score=52.42 Aligned_cols=23 Identities=17% Similarity=0.153 Sum_probs=19.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hh
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AK 38 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~ 38 (125)
+.-+|+++|..++|||||+.+ +.
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~ 41 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVC 41 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHH
Confidence 344799999999999999999 54
No 377
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.91 E-value=0.0065 Score=41.21 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=36.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----cccCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK----DIRDCM 94 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~----Di~~~~ 94 (125)
.+++.|.+|+|||+++..+-......+. | +.+.+.+.|..|. .+..+... ......
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~--------p-----------~~~~l~iiD~k~~-~l~~~~~~~~~~~~~~~~ 99 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYS--------P-----------DDVQLYIIDPKGS-DLAPLADLPHVAAVAVAT 99 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT----------T-----------TTEEEEEE-TTSS-CCGGGTT-TTBSS-S-B-
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhc--------C-----------CccEEEEEcCCcc-ccchhhhhhhhccccccc
Confidence 7999999999999999983322222211 1 3467778888765 33333222 222455
Q ss_pred CHHHHHHHHhhh
Q psy9521 95 GVREVKPIFNKN 106 (125)
Q Consensus 95 s~~~i~~~l~~~ 106 (125)
+.+++...++.+
T Consensus 100 ~~~~~~~~l~~l 111 (205)
T PF01580_consen 100 DPEEILRLLEEL 111 (205)
T ss_dssp SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 666666555544
No 378
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.91 E-value=0.00076 Score=44.55 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=15.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..--+++.|++|+|||+|++++..
T Consensus 23 ~~~~~ll~G~~G~GKT~ll~~~~~ 46 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSLLRALLD 46 (185)
T ss_dssp ----EEE-B-TTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 344589999999999999998443
No 379
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=96.91 E-value=0.00092 Score=43.67 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=17.7
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
|+|+|..++|||||++.+-+
T Consensus 1 V~v~G~~ssGKSTliNaLlG 20 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLG 20 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEcCCCCCHHHHHHHHHh
Confidence 68999999999999999443
No 380
>KOG0099|consensus
Probab=96.91 E-value=0.00046 Score=49.09 Aligned_cols=33 Identities=24% Similarity=0.567 Sum_probs=23.9
Q ss_pred ccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 56 TVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 56 t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
|.|+--..+.++.++|+++|++||..-+..|-.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQ 221 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQ 221 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHH
Confidence 334333356677899999999999877777665
No 381
>PF05729 NACHT: NACHT domain
Probab=96.91 E-value=0.00083 Score=43.43 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEeCCCCcHHHHHHHHhhccccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTKN 44 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~~ 44 (125)
+++.|++|+|||+++.++......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhc
Confidence 7899999999999999955444443
No 382
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.90 E-value=0.00081 Score=41.47 Aligned_cols=20 Identities=35% Similarity=0.303 Sum_probs=18.0
Q ss_pred EEEEEEeCCCCcHHHHHHHH
Q psy9521 18 FCVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i 37 (125)
-.++++|++|+|||||+..+
T Consensus 16 e~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 16 VGVLITGDSGIGKTELALEL 35 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHh
Confidence 45899999999999999994
No 383
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.89 E-value=0.0009 Score=45.21 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|.+.|++|||||||.+.+.+.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999976654
No 384
>PRK13949 shikimate kinase; Provisional
Probab=96.89 E-value=0.001 Score=44.13 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|+++|.+|+||||+...+..
T Consensus 3 ~I~liG~~GsGKstl~~~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998654
No 385
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.89 E-value=0.00091 Score=44.46 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
|+++|++||||||+..++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999986543
No 386
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.88 E-value=0.0011 Score=44.44 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 368899999999999999977643
No 387
>PF13479 AAA_24: AAA domain
Probab=96.88 E-value=0.001 Score=45.69 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=21.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
++.+|+++.|++|+|||+++..+.
T Consensus 1 ~~~~~~lIyG~~G~GKTt~a~~~~ 24 (213)
T PF13479_consen 1 KKPIKILIYGPPGSGKTTLAASLP 24 (213)
T ss_pred CCceEEEEECCCCCCHHHHHHhCC
Confidence 467899999999999999999874
No 388
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.87 E-value=0.001 Score=44.85 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-+++.|++|||||||++.+...+
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 48899999999999999955443
No 389
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.87 E-value=0.0011 Score=41.41 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=17.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
--+++.|++|+|||++++++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 348899999999999999954433
No 390
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.86 E-value=0.00096 Score=46.75 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=16.9
Q ss_pred EEeCCCCcHHHHHHHHhhccc
Q psy9521 22 ILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 22 v~G~~~~GKTsl~~~i~~~~~ 42 (125)
|+|++||||||+++.+.+-..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~ 21 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLE 21 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 689999999999999765443
No 391
>PLN02200 adenylate kinase family protein
Probab=96.86 E-value=0.0012 Score=46.04 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=21.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+....|+++|.+||||||+..++..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3557799999999999999998653
No 392
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.85 E-value=0.0012 Score=44.97 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 29 FVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999987643
No 393
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.85 E-value=0.0012 Score=45.14 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999977643
No 394
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.84 E-value=0.0011 Score=45.20 Aligned_cols=23 Identities=35% Similarity=0.327 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999987644
No 395
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.83 E-value=0.0013 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 26 ~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 26 MYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999987643
No 396
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.83 E-value=0.0013 Score=44.67 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999977643
No 397
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.83 E-value=0.0013 Score=45.82 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 30 FVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58899999999999999977644
No 398
>PLN02674 adenylate kinase
Probab=96.83 E-value=0.002 Score=45.33 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=22.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+...+|+++|++|+||+|+..++...+
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHc
Confidence 445789999999999999999976544
No 399
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.83 E-value=0.0012 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=21.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
=+|+++|.+|||||||++-+.+-+.
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gly~ 524 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGLYK 524 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3599999999999999999876544
No 400
>PRK07560 elongation factor EF-2; Reviewed
Probab=96.82 E-value=0.0031 Score=50.85 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.7
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i 37 (125)
+|+++|..++|||||+.++
T Consensus 22 ni~iigh~d~GKTTL~e~l 40 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSDNL 40 (731)
T ss_pred EEEEEEeCCCCHHHHHHHH
Confidence 4999999999999999993
No 401
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.82 E-value=0.0013 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 28 VVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987654
No 402
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.82 E-value=0.0009 Score=43.75 Aligned_cols=21 Identities=19% Similarity=0.495 Sum_probs=18.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
|+++|++|+||||+...+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999986543
No 403
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.82 E-value=0.0014 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999977643
No 404
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.82 E-value=0.0012 Score=44.17 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++++|++|+||++|.+++-..++
T Consensus 5 ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 5 IVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp EEEESSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHhcc
Confidence 78999999999999999644443
No 405
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.81 E-value=0.0014 Score=44.56 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=22.3
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.+.+.+.....--+++.|+.|+|||+|++.+.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~ 41 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLKEFI 41 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHH
Confidence 34444444345568899999999999999943
No 406
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.81 E-value=0.0014 Score=44.75 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 30 ~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 30 FLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999977643
No 407
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0014 Score=45.01 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 27 EIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999987643
No 408
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.81 E-value=0.0013 Score=44.19 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999977543
No 409
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.81 E-value=0.0014 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999977643
No 410
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.80 E-value=0.0014 Score=42.25 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.|+++|..++|||||+..+-+..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999944333
No 411
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=96.79 E-value=0.0019 Score=51.58 Aligned_cols=27 Identities=30% Similarity=0.188 Sum_probs=22.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+-=+++++|++|+|||||++-+.+-+.
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 344689999999999999999776544
No 412
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.79 E-value=0.0014 Score=44.91 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999976543
No 413
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.79 E-value=0.0014 Score=45.04 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 33 TLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999977643
No 414
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.79 E-value=0.0015 Score=44.82 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 33 IVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987653
No 415
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.79 E-value=0.0015 Score=44.49 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 28 IFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977643
No 416
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.78 E-value=0.0015 Score=45.15 Aligned_cols=23 Identities=35% Similarity=0.280 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 28 IVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999987643
No 417
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.78 E-value=0.0015 Score=44.55 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 28 FLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977643
No 418
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.77 E-value=0.0028 Score=43.93 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=23.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+..-+.+.|++|+|||||++.+.+.+.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4677899999999999999998765444
No 419
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.77 E-value=0.0012 Score=44.07 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
|++.|..||||||+++++.+.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999776553
No 420
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.77 E-value=0.0016 Score=44.03 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 27 EALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999977643
No 421
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.77 E-value=0.0015 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 28 IHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999977643
No 422
>PRK13695 putative NTPase; Provisional
Probab=96.75 E-value=0.0014 Score=43.49 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|+++.|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999995433
No 423
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.75 E-value=0.0017 Score=45.02 Aligned_cols=23 Identities=35% Similarity=0.588 Sum_probs=20.9
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+.++|+.|+|||||++.+.+++.
T Consensus 30 ~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 30 LAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred EEEECCCCccHHHHHHHhhCccC
Confidence 68999999999999999988766
No 424
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.75 E-value=0.0017 Score=43.83 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999977643
No 425
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.74 E-value=0.0058 Score=43.65 Aligned_cols=35 Identities=26% Similarity=0.485 Sum_probs=24.9
Q ss_pred HHhhhccCce-EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 8 FYKYMLRKDE-FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 8 ~~~~~~~~~~-~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+...+....+ ..++++|++|+|||||++.+.+...
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 3444443322 4699999999999999999765443
No 426
>KOG3887|consensus
Probab=96.74 E-value=0.00097 Score=46.97 Aligned_cols=61 Identities=21% Similarity=0.420 Sum_probs=34.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
-+|+++|...+||||+.+-+-.+-++... .-.++|.......+...-+.+++||.|||..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneT----lflESTski~~d~is~sfinf~v~dfPGQ~~~ 88 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNET----LFLESTSKITRDHISNSFINFQVWDFPGQMDF 88 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCce----eEeeccCcccHhhhhhhhcceEEeecCCcccc
Confidence 34999999999999998873322222100 00001111111112112278999999999755
No 427
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.74 E-value=0.0016 Score=44.46 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 27 FLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 48999999999999999987643
No 428
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.74 E-value=0.0017 Score=43.98 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 28 e~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 28 GLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999976643
No 429
>PRK10908 cell division protein FtsE; Provisional
Probab=96.74 E-value=0.0017 Score=44.64 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 29 EMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999977644
No 430
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0017 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999987654
No 431
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.74 E-value=0.0018 Score=42.56 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999977643
No 432
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.0018 Score=43.11 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 28 IVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999976543
No 433
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.73 E-value=0.0016 Score=43.31 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-+|+++|+.|+||||+.+.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999996543
No 434
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.0017 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.288 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 32 ~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 32 FVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977643
No 435
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.73 E-value=0.0017 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 358899999999999999987643
No 436
>PRK14528 adenylate kinase; Provisional
Probab=96.73 E-value=0.0016 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+++|++|+||||+.+++...
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~ 24 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCER 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999987543
No 437
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.73 E-value=0.0016 Score=44.16 Aligned_cols=21 Identities=43% Similarity=0.493 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+.++|++|+|||||++-+.+
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAG 47 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAG 47 (231)
T ss_pred EEEEECCCCccHHHHHHHHHh
Confidence 589999999999999999764
No 438
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.72 E-value=0.0016 Score=44.71 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+|+|+|++|+||||+...+...
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999986543
No 439
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.72 E-value=0.0018 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.356 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 28 FVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977643
No 440
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.72 E-value=0.0018 Score=44.40 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=20.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|+.|+|||||++.+.+..+
T Consensus 39 ~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 39 ALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCC
Confidence 488999999999999999876543
No 441
>PRK14529 adenylate kinase; Provisional
Probab=96.72 E-value=0.0014 Score=45.51 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+|+++|++||||||+..++...+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999999866544
No 442
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.72 E-value=0.0022 Score=50.12 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.=+++++|++|+|||||++-+.+..+
T Consensus 369 G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 369 GKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 34689999999999999999876554
No 443
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.72 E-value=0.0018 Score=43.22 Aligned_cols=23 Identities=30% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 28 IVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999977654
No 444
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.71 E-value=0.0017 Score=41.90 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999977643
No 445
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.71 E-value=0.0018 Score=44.37 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999987643
No 446
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.0018 Score=45.08 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 31 IVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987654
No 447
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.71 E-value=0.0019 Score=42.55 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999977643
No 448
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.70 E-value=0.0017 Score=43.48 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
++++|++||||+|+..++...+
T Consensus 5 ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 5 IVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999965444
No 449
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.70 E-value=0.0019 Score=43.89 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++|-+.|++|||||+|+.++-....
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~ 38 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALK 38 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHHHHH
Confidence 7899999999999999998443333
No 450
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.70 E-value=0.0019 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.261 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 37 ~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 37 MMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999977643
No 451
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.70 E-value=0.002 Score=42.98 Aligned_cols=24 Identities=38% Similarity=0.404 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999977643
No 452
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.70 E-value=0.0026 Score=42.71 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+++.|++|||||+|++.+..
T Consensus 31 ~iaitGPSG~GKStllk~va~ 51 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVAS 51 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHh
Confidence 488999999999999999543
No 453
>PRK06762 hypothetical protein; Provisional
Probab=96.70 E-value=0.0016 Score=42.70 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-|++.|.+|+||||+.+.+...+
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999876543
No 454
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.70 E-value=0.0017 Score=44.71 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 28 ~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 28 ITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58899999999999999977654
No 455
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.69 E-value=0.0018 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhccccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFTKN 44 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~~~ 44 (125)
|.+.|++|||||||.+++...+...
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 6789999999999999987666543
No 456
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.69 E-value=0.0019 Score=44.32 Aligned_cols=23 Identities=26% Similarity=0.083 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 15 ~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 15 HIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48899999999999999977643
No 457
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.69 E-value=0.002 Score=43.27 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.-.++++|+.|+||||+++.+.+..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4469999999999999999865443
No 458
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.69 E-value=0.0022 Score=50.23 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=22.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+-=+++++|++|+|||||++-+.+.+.
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 344689999999999999999876554
No 459
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.68 E-value=0.002 Score=44.77 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 29 FVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 47899999999999999977643
No 460
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.68 E-value=0.002 Score=43.81 Aligned_cols=24 Identities=29% Similarity=0.194 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 27 EIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 357899999999999999977643
No 461
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.67 E-value=0.002 Score=43.76 Aligned_cols=23 Identities=35% Similarity=0.293 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~ 51 (204)
T PRK13538 29 LVQIEGPNGAGKTSLLRILAGLA 51 (204)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999977643
No 462
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.002 Score=44.76 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 29 FVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 48999999999999999976543
No 463
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.67 E-value=0.0017 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..+|+++|.+|+|||||++.|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 346999999999999999996644
No 464
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.67 E-value=0.002 Score=45.44 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 29 LLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999977643
No 465
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.67 E-value=0.0034 Score=45.24 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=23.1
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
...+..+.-.-+-++|.+|+|||||++++.
T Consensus 96 r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~ 125 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETL 125 (290)
T ss_pred HHHHHhcCCeEEEEECCCCCCHHHHHHHHH
Confidence 334444566779999999999999998843
No 466
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.002 Score=44.84 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 30 TLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987653
No 467
>KOG2485|consensus
Probab=96.66 E-value=0.0048 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.695 Sum_probs=21.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
...+.+.|+|-+|||||||++.+.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r 164 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALR 164 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHH
Confidence 478999999999999999999843
No 468
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.66 E-value=0.002 Score=45.54 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 40 ~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 40 FVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999977643
No 469
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.66 E-value=0.0021 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-=.+.++|+.|+|||||++.+.+..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999977644
No 470
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.66 E-value=0.0022 Score=42.47 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999987644
No 471
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0021 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.++++|+.|+|||||++.+.+..
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999977643
No 472
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.65 E-value=0.002 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
=.++++|+.|+|||||++.+.+..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 30 EVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3589999999999999999776543
No 473
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.65 E-value=0.0019 Score=41.56 Aligned_cols=21 Identities=19% Similarity=0.521 Sum_probs=18.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
+++.|.+|+||||+.+.+...
T Consensus 2 i~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhh
Confidence 688999999999999996543
No 474
>PLN02459 probable adenylate kinase
Probab=96.65 E-value=0.0019 Score=45.82 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=21.8
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..+.++++++|++|+||+|+..++..
T Consensus 26 ~~~~~~ii~~G~PGsGK~T~a~~la~ 51 (261)
T PLN02459 26 KGRNVNWVFLGCPGVGKGTYASRLSK 51 (261)
T ss_pred ccCccEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988654
No 475
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.65 E-value=0.0022 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 30 KIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 48899999999999999977653
No 476
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.64 E-value=0.0019 Score=45.45 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.--+++.|++|+|||++++.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHh
Confidence 335899999999999999996544
No 477
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.64 E-value=0.0019 Score=44.89 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+.
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 28 IHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
No 478
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.64 E-value=0.0018 Score=43.96 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=17.5
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
++++|++|+||||+++.+-.
T Consensus 4 ilI~GptGSGKTTll~~ll~ 23 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMID 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999998443
No 479
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0022 Score=44.26 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 31 TVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 48999999999999999977654
No 480
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0021 Score=44.47 Aligned_cols=23 Identities=30% Similarity=0.349 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 29 KVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 57999999999999999987654
No 481
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.64 E-value=0.0023 Score=42.35 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999977643
No 482
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0021 Score=44.65 Aligned_cols=23 Identities=35% Similarity=0.329 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 30 LVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977643
No 483
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.64 E-value=0.0021 Score=44.33 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-=.++++|+.|+|||||++.+.+..
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999977643
No 484
>KOG3347|consensus
Probab=96.63 E-value=0.0015 Score=42.67 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.-+|++.|-+|+|||||..++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 346999999999999999997643
No 485
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.63 E-value=0.0022 Score=45.06 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 27 ~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 27 VIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999977643
No 486
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.62 E-value=0.002 Score=49.86 Aligned_cols=27 Identities=30% Similarity=0.252 Sum_probs=21.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+-=+++++|++|+|||||++-+.+-+.
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344689999999999999999765443
No 487
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.62 E-value=0.0028 Score=44.94 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=22.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTK 43 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~ 43 (125)
.+.+.|-+.|++|+|||||+..+-..+..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 46788999999999999999995544443
No 488
>KOG1490|consensus
Probab=96.62 E-value=0.0033 Score=48.39 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=36.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.-.++++|-++||||||++.+...-. ..|. -+|.++-+..++.+-..+++.||||-
T Consensus 168 trTlllcG~PNVGKSSf~~~vtradvevqpYa-------FTTksL~vGH~dykYlrwQViDTPGI 225 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVTRADDEVQPYA-------FTTKLLLVGHLDYKYLRWQVIDTPGI 225 (620)
T ss_pred cCeEEEecCCCCCcHhhcccccccccccCCcc-------cccchhhhhhhhhheeeeeecCCccc
Confidence 34599999999999998888542211 1111 13444444555555578889999985
No 489
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.61 E-value=0.002 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=19.2
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|++.|.+|+||||+.+.+...+
T Consensus 5 i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 5 IILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8999999999999999976544
No 490
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=96.61 E-value=0.002 Score=51.61 Aligned_cols=26 Identities=19% Similarity=0.233 Sum_probs=21.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-=+++++|++|+|||||++-+.+-+.
T Consensus 505 Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 505 GQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33789999999999999999776544
No 491
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.0022 Score=45.55 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 29 VTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999977643
No 492
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.61 E-value=0.0023 Score=44.71 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 31 VVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999977643
No 493
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.61 E-value=0.0018 Score=44.85 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=19.3
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
|.+.|++|||||||++.+.+.+.
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999766553
No 494
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0024 Score=43.53 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=20.4
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
=.+.++|+.|+|||||++.+.+..
T Consensus 25 e~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 25 EITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999976543
No 495
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.60 E-value=0.0025 Score=43.47 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 30 ALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999977643
No 496
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.60 E-value=0.0024 Score=44.49 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 29 ~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 29 FLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
No 497
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=96.60 E-value=0.0028 Score=44.51 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|+.|+|||||++.+.+...
T Consensus 31 ~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 31 VLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999876543
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.0022 Score=42.81 Aligned_cols=20 Identities=30% Similarity=0.351 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
+|++.|.+|+||||+..++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 69999999999999999976
No 499
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0022 Score=44.93 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+.
T Consensus 34 ~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 34 VTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999997653
No 500
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.59 E-value=0.0024 Score=44.51 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+..
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 31 IYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999977654
Done!