Query psy9521
Match_columns 125
No_of_seqs 141 out of 1318
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 21:46:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 3.8E-23 1.3E-27 141.2 7.9 98 15-122 11-125 (216)
2 1zj6_A ADP-ribosylation factor 99.9 1E-21 3.4E-26 130.1 11.3 96 1-106 1-109 (187)
3 1moz_A ARL1, ADP-ribosylation 99.9 2.9E-21 1E-25 127.0 12.1 97 1-106 1-111 (183)
4 2x77_A ADP-ribosylation factor 99.8 5E-21 1.7E-25 126.8 9.8 97 1-106 3-115 (189)
5 1ksh_A ARF-like protein 2; sma 99.8 2.5E-20 8.6E-25 123.0 10.7 96 2-106 3-111 (186)
6 1m2o_B GTP-binding protein SAR 99.8 5.8E-20 2E-24 122.3 11.4 112 1-122 6-131 (190)
7 2b6h_A ADP-ribosylation factor 99.8 1.6E-20 5.4E-25 125.3 8.6 96 2-106 14-122 (192)
8 1f6b_A SAR1; gtpases, N-termin 99.8 6.5E-20 2.2E-24 122.9 9.7 94 5-106 12-118 (198)
9 1fzq_A ADP-ribosylation factor 99.8 1.9E-19 6.6E-24 118.9 10.2 91 8-106 5-109 (181)
10 1zd9_A ADP-ribosylation factor 99.8 9.3E-19 3.2E-23 116.0 10.2 87 12-106 17-116 (188)
11 1upt_A ARL1, ADP-ribosylation 99.8 5.2E-18 1.8E-22 110.1 12.5 83 15-106 5-100 (171)
12 1r8s_A ADP-ribosylation factor 99.8 3E-18 1E-22 110.6 9.4 80 18-106 1-93 (164)
13 2h17_A ADP-ribosylation factor 99.8 3.7E-18 1.3E-22 112.4 9.8 84 14-106 18-114 (181)
14 4bas_A ADP-ribosylation factor 99.8 3.8E-18 1.3E-22 113.4 9.6 85 14-106 14-112 (199)
15 3q3j_B RHO-related GTP-binding 99.8 4.2E-18 1.4E-22 115.4 9.8 98 15-123 25-139 (214)
16 3t5g_A GTP-binding protein RHE 99.8 7.4E-18 2.5E-22 110.6 10.4 84 15-106 4-103 (181)
17 1m7b_A RND3/RHOE small GTP-bin 99.8 6.6E-18 2.3E-22 111.5 10.1 85 14-106 4-105 (184)
18 2h57_A ADP-ribosylation factor 99.8 6.9E-18 2.4E-22 111.8 10.1 85 14-106 18-116 (190)
19 3ihw_A Centg3; RAS, centaurin, 99.8 6.3E-18 2.2E-22 112.0 9.6 85 14-106 17-111 (184)
20 3reg_A RHO-like small GTPase; 99.7 1.1E-17 3.7E-22 111.2 10.1 85 14-106 20-121 (194)
21 1ek0_A Protein (GTP-binding pr 99.7 1.6E-17 5.4E-22 107.4 10.4 83 16-106 2-101 (170)
22 2ew1_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 112.5 10.0 97 15-121 24-137 (201)
23 1c1y_A RAS-related protein RAP 99.7 9.3E-18 3.2E-22 108.3 9.2 83 16-106 2-100 (167)
24 3c5c_A RAS-like protein 12; GD 99.7 1.7E-17 5.8E-22 110.0 10.4 86 13-106 17-117 (187)
25 2fn4_A P23, RAS-related protei 99.7 2.1E-17 7.2E-22 107.9 10.6 84 15-106 7-106 (181)
26 1r2q_A RAS-related protein RAB 99.7 1.8E-17 6.2E-22 107.1 10.2 97 15-121 4-117 (170)
27 3kkq_A RAS-related protein M-R 99.7 1.5E-17 5.2E-22 109.2 9.9 85 14-106 15-115 (183)
28 1gwn_A RHO-related GTP-binding 99.7 1.5E-17 5.2E-22 112.1 10.0 97 15-122 26-139 (205)
29 2hup_A RAS-related protein RAB 99.7 8.2E-18 2.8E-22 112.8 8.5 84 15-106 27-127 (201)
30 2j0v_A RAC-like GTP-binding pr 99.7 1.2E-17 4.1E-22 112.4 9.1 84 15-106 7-107 (212)
31 1z08_A RAS-related protein RAB 99.7 1.3E-17 4.5E-22 108.0 9.0 84 15-106 4-104 (170)
32 2fu5_C RAS-related protein RAB 99.7 5.2E-18 1.8E-22 111.5 7.1 84 15-106 6-106 (183)
33 3tw8_B RAS-related protein RAB 99.7 2.6E-17 8.8E-22 107.5 10.3 84 15-106 7-107 (181)
34 2bme_A RAB4A, RAS-related prot 99.7 2.1E-17 7.2E-22 108.7 9.7 84 15-106 8-108 (186)
35 1kao_A RAP2A; GTP-binding prot 99.7 2.6E-17 8.7E-22 106.0 9.9 83 16-106 2-100 (167)
36 1x3s_A RAS-related protein RAB 99.7 3.5E-17 1.2E-21 108.2 10.8 99 15-122 13-128 (195)
37 1z06_A RAS-related protein RAB 99.7 1.6E-17 5.5E-22 110.0 8.9 100 14-122 17-134 (189)
38 2fg5_A RAB-22B, RAS-related pr 99.7 4.1E-17 1.4E-21 108.4 10.9 85 14-106 20-121 (192)
39 2hxs_A RAB-26, RAS-related pro 99.7 1.2E-17 4E-22 109.1 8.1 85 14-106 3-105 (178)
40 3oes_A GTPase rhebl1; small GT 99.7 2.1E-17 7.3E-22 110.5 9.6 86 13-106 20-121 (201)
41 2efe_B Small GTP-binding prote 99.7 3.9E-17 1.3E-21 106.9 10.6 85 14-106 9-110 (181)
42 1z0j_A RAB-22, RAS-related pro 99.7 4.2E-17 1.4E-21 105.5 10.6 84 15-106 4-104 (170)
43 4dsu_A GTPase KRAS, isoform 2B 99.7 3.6E-17 1.2E-21 107.6 10.4 84 15-106 2-101 (189)
44 2atv_A RERG, RAS-like estrogen 99.7 2.3E-17 7.8E-22 109.9 9.3 89 9-106 20-124 (196)
45 2iwr_A Centaurin gamma 1; ANK 99.7 1.6E-17 5.4E-22 108.7 8.4 83 15-106 5-98 (178)
46 3tkl_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 108.4 10.3 97 15-121 14-127 (196)
47 2atx_A Small GTP binding prote 99.7 2E-17 6.9E-22 109.8 9.0 84 15-106 16-116 (194)
48 2q3h_A RAS homolog gene family 99.7 2.4E-17 8E-22 110.0 9.3 85 14-106 17-118 (201)
49 1u8z_A RAS-related protein RAL 99.7 2.8E-17 9.7E-22 105.9 9.4 83 16-106 3-101 (168)
50 3t1o_A Gliding protein MGLA; G 99.7 6.3E-18 2.1E-22 111.9 6.4 94 13-106 10-129 (198)
51 4gzl_A RAS-related C3 botulinu 99.7 2.5E-17 8.6E-22 110.6 9.3 88 11-106 24-128 (204)
52 2g6b_A RAS-related protein RAB 99.7 5.2E-17 1.8E-21 106.2 10.5 86 13-106 6-109 (180)
53 2p5s_A RAS and EF-hand domain 99.7 1.1E-17 3.8E-22 111.7 7.4 88 11-106 22-126 (199)
54 2a5j_A RAS-related protein RAB 99.7 2.6E-17 9E-22 109.2 9.1 84 15-106 19-119 (191)
55 2bcg_Y Protein YP2, GTP-bindin 99.7 5.3E-17 1.8E-21 108.7 10.6 84 15-106 6-106 (206)
56 1z0f_A RAB14, member RAS oncog 99.7 4E-17 1.4E-21 106.4 9.7 85 14-106 12-113 (179)
57 2zej_A Dardarin, leucine-rich 99.7 9.1E-18 3.1E-22 111.0 6.6 82 17-106 2-106 (184)
58 1z2a_A RAS-related protein RAB 99.7 3.7E-17 1.3E-21 105.6 9.3 84 15-106 3-103 (168)
59 2y8e_A RAB-protein 6, GH09086P 99.7 4.6E-17 1.6E-21 106.1 9.8 84 15-106 12-112 (179)
60 1g16_A RAS-related protein SEC 99.7 3.3E-17 1.1E-21 106.0 9.0 83 16-106 2-101 (170)
61 3cpj_B GTP-binding protein YPT 99.7 3.6E-17 1.2E-21 111.2 9.4 84 15-106 11-111 (223)
62 2oil_A CATX-8, RAS-related pro 99.7 6.9E-17 2.3E-21 107.1 10.4 84 15-106 23-123 (193)
63 3q72_A GTP-binding protein RAD 99.7 3.3E-17 1.1E-21 105.9 8.5 82 17-106 2-98 (166)
64 2gf9_A RAS-related protein RAB 99.7 1E-16 3.5E-21 106.1 11.0 84 15-106 20-120 (189)
65 2bov_A RAla, RAS-related prote 99.7 6.7E-17 2.3E-21 107.8 10.2 85 14-106 11-111 (206)
66 1mh1_A RAC1; GTP-binding, GTPa 99.7 5.1E-17 1.8E-21 106.6 9.4 83 16-106 4-103 (186)
67 1wms_A RAB-9, RAB9, RAS-relate 99.7 4.3E-17 1.5E-21 106.3 8.9 84 15-106 5-105 (177)
68 2j1l_A RHO-related GTP-binding 99.7 4E-17 1.4E-21 110.3 8.9 85 14-106 31-132 (214)
69 2a9k_A RAS-related protein RAL 99.7 6.5E-17 2.2E-21 106.1 9.6 84 15-106 16-115 (187)
70 2il1_A RAB12; G-protein, GDP, 99.7 3.8E-17 1.3E-21 108.6 8.6 84 15-106 24-124 (192)
71 2o52_A RAS-related protein RAB 99.7 2.9E-17 9.9E-22 109.9 7.8 84 15-106 23-123 (200)
72 3cph_A RAS-related protein SEC 99.7 7.2E-17 2.5E-21 108.3 9.6 84 15-106 18-118 (213)
73 1zbd_A Rabphilin-3A; G protein 99.7 9.9E-17 3.4E-21 107.1 10.1 83 16-106 7-106 (203)
74 3bc1_A RAS-related protein RAB 99.7 5.2E-17 1.8E-21 107.0 8.5 84 15-106 9-119 (195)
75 3bwd_D RAC-like GTP-binding pr 99.7 1.1E-17 3.7E-22 109.7 5.0 85 14-106 5-106 (182)
76 3o47_A ADP-ribosylation factor 99.7 8.3E-17 2.9E-21 115.8 10.1 85 13-106 161-258 (329)
77 3clv_A RAB5 protein, putative; 99.7 9.9E-17 3.4E-21 106.3 9.7 85 14-106 4-142 (208)
78 3gj0_A GTP-binding nuclear pro 99.7 4.7E-17 1.6E-21 110.3 8.1 85 14-106 12-113 (221)
79 2fv8_A H6, RHO-related GTP-bin 99.7 1E-16 3.5E-21 107.7 9.6 85 14-106 22-123 (207)
80 2ce2_X GTPase HRAS; signaling 99.7 1.6E-16 5.5E-21 102.0 10.0 83 16-106 2-100 (166)
81 2gco_A H9, RHO-related GTP-bin 99.7 1E-16 3.4E-21 107.3 9.2 84 15-106 23-123 (201)
82 3dz8_A RAS-related protein RAB 99.7 1.5E-17 5.1E-22 110.4 4.8 98 15-122 21-135 (191)
83 3con_A GTPase NRAS; structural 99.7 2.2E-16 7.4E-21 104.3 10.1 84 15-106 19-118 (190)
84 3lvq_E ARF-GAP with SH3 domain 99.7 3E-16 1E-20 118.0 11.8 84 14-106 319-415 (497)
85 1ky3_A GTP-binding protein YPT 99.7 7.4E-17 2.5E-21 105.4 7.3 85 14-106 5-107 (182)
86 2f7s_A C25KG, RAS-related prot 99.7 5E-17 1.7E-21 109.7 6.6 84 15-106 23-133 (217)
87 2erx_A GTP-binding protein DI- 99.7 1.8E-16 6.1E-21 102.6 8.5 83 16-106 2-100 (172)
88 1vg8_A RAS-related protein RAB 99.7 2.9E-16 1E-20 104.9 9.7 85 14-106 5-106 (207)
89 2yc2_C IFT27, small RAB-relate 99.7 3.1E-17 1E-21 109.5 4.6 84 15-106 18-122 (208)
90 3l0i_B RAS-related protein RAB 99.7 3.3E-17 1.1E-21 109.4 4.1 98 15-122 31-145 (199)
91 3cbq_A GTP-binding protein REM 99.7 2.2E-16 7.6E-21 105.4 7.8 84 15-106 21-122 (195)
92 4djt_A GTP-binding nuclear pro 99.7 1.1E-16 3.9E-21 108.0 6.3 84 15-106 9-110 (218)
93 2nzj_A GTP-binding protein REM 99.7 3.3E-16 1.1E-20 101.8 8.3 83 15-106 2-103 (175)
94 2gf0_A GTP-binding protein DI- 99.7 3.6E-16 1.2E-20 103.8 8.2 84 15-106 6-105 (199)
95 3r7w_B Gtpase2, GTP-binding pr 99.7 1.8E-16 6.1E-21 113.9 6.7 96 19-123 1-114 (331)
96 3q85_A GTP-binding protein REM 99.6 5.5E-16 1.9E-20 100.3 8.0 84 17-106 2-101 (169)
97 3r7w_A Gtpase1, GTP-binding pr 99.6 1E-15 3.4E-20 109.2 9.8 84 16-106 2-106 (307)
98 2f9l_A RAB11B, member RAS onco 99.6 1.4E-15 4.9E-20 101.5 9.9 83 16-106 4-103 (199)
99 1oix_A RAS-related protein RAB 99.6 2.1E-15 7.1E-20 100.3 10.4 83 16-106 28-127 (191)
100 3llu_A RAS-related GTP-binding 99.6 3.9E-16 1.3E-20 104.0 6.7 98 13-123 16-137 (196)
101 3th5_A RAS-related C3 botulinu 99.4 2E-17 7E-22 110.7 0.0 88 11-106 24-128 (204)
102 2lkc_A Translation initiation 99.6 2.9E-15 1E-19 97.6 9.1 67 14-88 5-74 (178)
103 2cjw_A GTP-binding protein GEM 99.6 3.6E-15 1.2E-19 99.3 9.1 83 15-106 4-106 (192)
104 2wkq_A NPH1-1, RAS-related C3 99.6 4.4E-15 1.5E-19 105.6 9.9 84 15-106 153-253 (332)
105 2g3y_A GTP-binding protein GEM 99.6 3.3E-15 1.1E-19 101.4 8.0 83 15-106 35-137 (211)
106 2fh5_B SR-beta, signal recogni 99.6 4.7E-15 1.6E-19 99.7 7.9 100 15-123 5-123 (214)
107 2wjg_A FEOB, ferrous iron tran 99.5 7.7E-14 2.6E-18 91.8 10.2 83 16-106 6-108 (188)
108 2wji_A Ferrous iron transport 99.5 2.5E-13 8.4E-18 88.1 10.3 60 16-83 2-64 (165)
109 1nrj_B SR-beta, signal recogni 99.5 2.5E-14 8.5E-19 96.4 5.1 83 14-106 9-109 (218)
110 2cxx_A Probable GTP-binding pr 99.5 2.2E-14 7.7E-19 94.3 3.9 77 18-104 2-104 (190)
111 2ged_A SR-beta, signal recogni 99.5 1.7E-14 5.9E-19 95.4 2.9 82 15-106 46-145 (193)
112 2gj8_A MNME, tRNA modification 99.5 6.2E-13 2.1E-17 86.9 10.0 84 15-106 2-108 (172)
113 4fid_A G protein alpha subunit 99.4 3.1E-13 1.1E-17 97.6 8.4 69 53-122 145-235 (340)
114 3pqc_A Probable GTP-binding pr 99.4 1.3E-13 4.4E-18 90.8 5.9 57 14-78 20-77 (195)
115 1svi_A GTP-binding protein YSX 99.4 2.3E-13 8E-18 89.9 6.4 82 14-104 20-131 (195)
116 2qu8_A Putative nucleolar GTP- 99.4 1.3E-12 4.5E-17 88.9 9.5 59 15-79 27-86 (228)
117 3dpu_A RAB family protein; roc 99.4 3.4E-13 1.2E-17 102.3 7.2 84 15-106 39-144 (535)
118 3ohm_A Guanine nucleotide-bind 99.4 3.9E-12 1.3E-16 91.4 11.7 68 54-122 152-241 (327)
119 3c5h_A Glucocorticoid receptor 99.4 1.9E-13 6.5E-18 94.9 3.5 85 14-106 16-190 (255)
120 3a1s_A Iron(II) transport prot 99.4 6.6E-12 2.3E-16 87.4 10.3 64 15-85 3-68 (258)
121 1cip_A Protein (guanine nucleo 99.4 5.7E-12 1.9E-16 91.5 10.1 69 54-123 178-268 (353)
122 1azs_C GS-alpha; complex (lyas 99.3 1.1E-11 3.9E-16 91.2 11.3 68 55-123 203-292 (402)
123 3def_A T7I23.11 protein; chlor 99.3 1.7E-11 5.7E-16 85.4 10.6 64 15-85 34-100 (262)
124 4dhe_A Probable GTP-binding pr 99.3 3.6E-12 1.2E-16 85.9 5.3 62 14-79 26-89 (223)
125 2dyk_A GTP-binding protein; GT 99.3 4.7E-11 1.6E-15 76.2 10.0 58 18-82 2-62 (161)
126 3i8s_A Ferrous iron transport 99.3 2.7E-11 9.4E-16 84.9 9.4 63 16-84 2-65 (274)
127 2hjg_A GTP-binding protein ENG 99.2 5.5E-12 1.9E-16 93.6 5.1 57 16-79 174-233 (436)
128 3gee_A MNME, tRNA modification 99.2 1.9E-11 6.4E-16 91.9 8.0 84 15-105 231-340 (476)
129 3k53_A Ferrous iron transport 99.2 6.6E-11 2.3E-15 82.6 10.1 61 16-84 2-65 (271)
130 3iby_A Ferrous iron transport 99.2 4.7E-11 1.6E-15 83.1 9.1 60 19-84 3-63 (256)
131 3p26_A Elongation factor 1 alp 99.2 2.1E-11 7.1E-16 91.6 7.5 72 14-85 30-127 (483)
132 4dcu_A GTP-binding protein ENG 99.2 9.6E-12 3.3E-16 92.8 5.6 66 15-87 193-271 (456)
133 1zun_B Sulfate adenylate trans 99.2 4.8E-11 1.6E-15 88.6 8.9 73 14-86 21-121 (434)
134 3iev_A GTP-binding protein ERA 99.2 3.1E-10 1E-14 80.8 12.4 88 14-106 7-118 (308)
135 3b1v_A Ferrous iron uptake tra 99.2 7E-11 2.4E-15 82.9 8.0 59 17-83 3-63 (272)
136 1jny_A EF-1-alpha, elongation 99.2 4.8E-11 1.6E-15 88.6 7.0 71 15-85 4-100 (435)
137 3sjy_A Translation initiation 99.2 7.8E-11 2.7E-15 86.6 7.9 26 14-39 5-30 (403)
138 1d2e_A Elongation factor TU (E 99.2 4.7E-11 1.6E-15 87.7 6.6 70 15-84 1-81 (397)
139 1s0u_A EIF-2-gamma, translatio 99.2 6.4E-11 2.2E-15 87.2 7.4 68 13-84 4-96 (408)
140 1wb1_A Translation elongation 99.2 2.7E-11 9.1E-16 91.1 5.3 70 16-85 18-89 (482)
141 3j2k_7 ERF3, eukaryotic polype 99.2 1.2E-10 4E-15 86.7 8.5 73 14-86 14-112 (439)
142 2xtz_A Guanine nucleotide-bind 99.2 3.9E-10 1.3E-14 81.8 11.0 56 67-123 181-258 (354)
143 1wf3_A GTP-binding protein; GT 99.2 6.7E-10 2.3E-14 78.9 11.9 62 16-82 6-68 (301)
144 3izq_1 HBS1P, elongation facto 99.2 5.9E-11 2E-15 91.5 6.9 71 15-85 165-261 (611)
145 1kk1_A EIF2gamma; initiation o 99.1 1.4E-10 4.7E-15 85.5 7.7 66 13-84 6-98 (410)
146 2c78_A Elongation factor TU-A; 99.1 1.6E-10 5.3E-15 85.1 7.8 73 14-86 8-92 (405)
147 2qag_A Septin-2, protein NEDD5 99.1 1.1E-10 3.9E-15 84.8 6.9 75 13-87 33-120 (361)
148 1mky_A Probable GTP-binding pr 99.1 2.7E-10 9.3E-15 84.6 8.9 61 16-83 179-242 (439)
149 1r5b_A Eukaryotic peptide chai 99.1 1.1E-10 3.7E-15 87.5 6.4 77 10-86 36-138 (467)
150 1h65_A Chloroplast outer envel 99.1 4.3E-10 1.5E-14 78.5 8.5 65 15-84 37-102 (270)
151 1mky_A Probable GTP-binding pr 99.1 5E-10 1.7E-14 83.2 9.1 56 19-81 3-61 (439)
152 1f60_A Elongation factor EEF1A 99.1 2.6E-10 8.8E-15 85.3 7.4 71 15-85 5-101 (458)
153 3t5d_A Septin-7; GTP-binding p 99.1 6.9E-10 2.3E-14 77.6 9.1 67 14-81 5-77 (274)
154 3lxx_A GTPase IMAP family memb 99.1 4.9E-10 1.7E-14 76.7 7.8 61 15-79 27-88 (239)
155 3izy_P Translation initiation 99.1 9.8E-11 3.3E-15 89.0 4.4 65 16-88 3-71 (537)
156 3lxw_A GTPase IMAP family memb 99.1 5.1E-10 1.7E-14 77.3 7.6 63 13-79 17-80 (247)
157 2xtp_A GTPase IMAP family memb 99.1 7.4E-10 2.5E-14 76.6 8.2 63 15-82 20-84 (260)
158 2elf_A Protein translation elo 99.0 3.1E-10 1.1E-14 82.8 6.6 53 19-84 23-75 (370)
159 2e87_A Hypothetical protein PH 99.0 1.9E-09 6.4E-14 78.1 10.6 85 15-106 165-274 (357)
160 2qtf_A Protein HFLX, GTP-bindi 99.0 4.1E-10 1.4E-14 82.0 7.1 58 17-79 178-236 (364)
161 3geh_A MNME, tRNA modification 99.0 4.7E-10 1.6E-14 84.0 6.8 62 15-83 222-286 (462)
162 1xzp_A Probable tRNA modificat 99.0 6.7E-10 2.3E-14 83.6 7.3 78 16-100 242-343 (482)
163 2hjg_A GTP-binding protein ENG 99.0 3.4E-10 1.2E-14 84.0 5.0 59 18-80 4-62 (436)
164 3mca_A HBS1, elongation factor 99.0 5.2E-10 1.8E-14 86.0 5.7 73 14-86 174-272 (592)
165 3tr5_A RF-3, peptide chain rel 98.9 7E-09 2.4E-13 78.8 10.2 87 16-104 12-129 (528)
166 1lnz_A SPO0B-associated GTP-bi 98.9 7.3E-10 2.5E-14 80.1 4.6 81 19-106 160-265 (342)
167 4dcu_A GTP-binding protein ENG 98.9 3.9E-10 1.3E-14 84.1 2.6 63 17-87 23-97 (456)
168 1dar_A EF-G, elongation factor 98.9 5.5E-09 1.9E-13 81.6 9.1 91 15-105 10-125 (691)
169 2aka_B Dynamin-1; fusion prote 98.9 9.7E-09 3.3E-13 72.0 9.5 27 16-42 25-52 (299)
170 3avx_A Elongation factor TS, e 98.9 3.4E-09 1.2E-13 86.4 7.8 72 14-85 293-375 (1289)
171 3qq5_A Small GTP-binding prote 98.9 1.9E-09 6.4E-14 79.9 5.4 66 15-85 32-99 (423)
172 1n0u_A EF-2, elongation factor 98.9 8.5E-09 2.9E-13 82.1 8.4 91 15-105 17-146 (842)
173 1g7s_A Translation initiation 98.8 1.1E-08 3.7E-13 78.7 7.9 82 16-100 4-116 (594)
174 1zo1_I IF2, translation initia 98.8 1.6E-09 5.4E-14 81.9 3.0 67 16-88 3-70 (501)
175 1jal_A YCHF protein; nucleotid 98.8 5.7E-09 1.9E-13 75.9 5.7 59 17-82 2-79 (363)
176 2xex_A Elongation factor G; GT 98.8 2.9E-08 1E-12 77.6 8.5 90 15-104 8-122 (693)
177 2h5e_A Peptide chain release f 98.7 6.2E-08 2.1E-12 73.6 9.5 70 15-84 11-97 (529)
178 1pui_A ENGB, probable GTP-bind 98.7 6.5E-09 2.2E-13 69.2 3.5 60 12-80 21-83 (210)
179 2qag_C Septin-7; cell cycle, c 98.7 8E-08 2.7E-12 71.1 9.6 70 13-82 27-101 (418)
180 2qnr_A Septin-2, protein NEDD5 98.7 1.2E-08 4.2E-13 72.4 5.1 75 13-87 14-101 (301)
181 2rdo_7 EF-G, elongation factor 98.7 6.2E-08 2.1E-12 75.9 9.0 88 15-102 8-127 (704)
182 1ega_A Protein (GTP-binding pr 98.7 5.3E-08 1.8E-12 69.0 7.7 60 16-80 7-67 (301)
183 3cb4_D GTP-binding protein LEP 98.7 4E-08 1.4E-12 75.6 7.5 90 16-105 3-119 (599)
184 1wxq_A GTP-binding protein; st 98.7 6E-08 2.1E-12 71.3 8.1 22 18-39 1-22 (397)
185 2ywe_A GTP-binding protein LEP 98.6 1E-07 3.6E-12 73.4 8.5 90 16-105 5-121 (600)
186 2dy1_A Elongation factor G; tr 98.6 3.3E-07 1.1E-11 71.4 10.2 74 15-88 7-93 (665)
187 3cnl_A YLQF, putative uncharac 98.6 2.4E-08 8.3E-13 69.6 2.6 56 18-82 100-157 (262)
188 2wsm_A Hydrogenase expression/ 98.5 2.7E-07 9.1E-12 61.9 7.4 25 14-38 27-51 (221)
189 2ohf_A Protein OLA1, GTP-bindi 98.5 6.1E-08 2.1E-12 71.3 4.2 65 15-84 20-101 (396)
190 1zcb_A G alpha I/13; GTP-bindi 98.5 2E-07 7E-12 67.8 6.9 68 55-123 187-276 (362)
191 2qpt_A EH domain-containing pr 98.5 1.8E-07 6.2E-12 71.4 6.5 26 16-41 64-90 (550)
192 2x2e_A Dynamin-1; nitration, h 98.5 6E-07 2.1E-11 64.8 8.6 27 16-42 30-57 (353)
193 3t34_A Dynamin-related protein 98.5 1E-06 3.5E-11 63.7 9.5 23 19-41 36-59 (360)
194 1puj_A YLQF, conserved hypothe 98.5 2.4E-07 8.2E-12 65.2 5.4 59 15-80 118-176 (282)
195 4a9a_A Ribosome-interacting GT 98.5 3.7E-07 1.3E-11 66.7 6.6 57 17-80 72-130 (376)
196 2j69_A Bacterial dynamin-like 98.4 1.3E-06 4.3E-11 68.4 9.5 25 15-39 67-91 (695)
197 2dby_A GTP-binding protein; GD 98.4 3.2E-07 1.1E-11 66.9 5.4 62 18-82 2-82 (368)
198 1jwy_B Dynamin A GTPase domain 98.3 1E-06 3.4E-11 62.2 5.4 24 16-39 23-46 (315)
199 3p32_A Probable GTPase RV1496/ 98.3 2.3E-06 8E-11 61.8 7.3 25 15-39 77-101 (355)
200 1ni3_A YCHF GTPase, YCHF GTP-b 98.3 1.6E-06 5.3E-11 63.7 6.2 25 15-39 18-42 (392)
201 1udx_A The GTP-binding protein 98.3 2.8E-06 9.7E-11 62.8 7.6 55 19-80 159-216 (416)
202 2hf9_A Probable hydrogenase ni 98.2 1.4E-06 4.9E-11 58.5 4.1 30 14-43 35-65 (226)
203 1f5n_A Interferon-induced guan 98.0 2.3E-05 7.7E-10 60.4 7.9 65 14-81 35-103 (592)
204 1u0l_A Probable GTPase ENGC; p 97.9 3.6E-06 1.2E-10 59.6 1.7 64 32-106 32-111 (301)
205 3h2y_A GTPase family protein; 97.7 3.3E-05 1.1E-09 56.2 4.7 24 17-40 160-183 (368)
206 3sop_A Neuronal-specific septi 97.6 4.6E-05 1.6E-09 53.2 3.7 25 17-41 2-26 (270)
207 3ec1_A YQEH GTPase; atnos1, at 97.6 8.5E-05 2.9E-09 54.0 5.0 24 17-40 162-185 (369)
208 1kgd_A CASK, peripheral plasma 97.5 6.6E-05 2.3E-09 48.9 3.0 23 19-41 7-29 (180)
209 1ex7_A Guanylate kinase; subst 97.5 7.7E-05 2.6E-09 49.4 3.1 22 20-41 4-25 (186)
210 1ye8_A Protein THEP1, hypothet 97.5 8.5E-05 2.9E-09 48.7 3.3 22 19-40 2-23 (178)
211 3vqt_A RF-3, peptide chain rel 97.4 0.00041 1.4E-08 52.9 7.1 66 18-83 32-114 (548)
212 2qag_B Septin-6, protein NEDD5 97.4 0.00067 2.3E-08 50.3 7.8 27 14-40 39-65 (427)
213 1lvg_A Guanylate kinase, GMP k 97.4 0.0001 3.6E-09 48.8 2.9 23 19-41 6-28 (198)
214 3a00_A Guanylate kinase, GMP k 97.3 0.00013 4.6E-09 47.7 3.0 23 20-42 4-26 (186)
215 3ney_A 55 kDa erythrocyte memb 97.3 0.00014 4.8E-09 48.6 3.0 24 19-42 21-44 (197)
216 1s96_A Guanylate kinase, GMP k 97.3 0.00014 4.8E-09 49.2 3.0 24 19-42 18-41 (219)
217 3tr0_A Guanylate kinase, GMP k 97.3 0.00015 5.2E-09 47.7 3.0 23 19-41 9-31 (205)
218 3tau_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 48.1 3.2 24 19-42 10-33 (208)
219 1zp6_A Hypothetical protein AT 97.3 0.00018 6.2E-09 46.8 3.2 23 18-40 10-32 (191)
220 1znw_A Guanylate kinase, GMP k 97.3 0.00017 5.7E-09 48.0 3.0 23 19-41 22-44 (207)
221 2www_A Methylmalonic aciduria 97.2 0.00037 1.3E-08 50.2 4.9 24 16-39 73-96 (349)
222 1tq4_A IIGP1, interferon-induc 97.2 0.00068 2.3E-08 50.1 6.2 26 16-41 68-93 (413)
223 4gp7_A Metallophosphoesterase; 97.2 0.00017 5.9E-09 46.6 2.6 18 19-36 11-28 (171)
224 1bif_A 6-phosphofructo-2-kinas 97.2 0.00028 9.5E-09 52.7 3.9 86 12-106 34-145 (469)
225 1z6g_A Guanylate kinase; struc 97.2 0.00021 7.2E-09 48.1 3.0 23 19-41 25-47 (218)
226 2qor_A Guanylate kinase; phosp 97.2 0.00023 7.8E-09 47.2 3.0 23 19-41 14-36 (204)
227 3c8u_A Fructokinase; YP_612366 97.2 0.00029 9.8E-09 46.9 3.4 28 15-42 20-47 (208)
228 3kb2_A SPBC2 prophage-derived 97.1 0.00026 8.8E-09 45.2 2.8 22 19-40 3-24 (173)
229 1zcb_A G alpha I/13; GTP-bindi 97.1 0.00035 1.2E-08 50.7 3.6 24 15-38 31-54 (362)
230 3tif_A Uncharacterized ABC tra 97.1 0.00033 1.1E-08 47.8 3.2 22 19-40 33-54 (235)
231 2j41_A Guanylate kinase; GMP, 97.1 0.00033 1.1E-08 46.0 3.0 23 19-41 8-30 (207)
232 1jbk_A CLPB protein; beta barr 97.1 0.00064 2.2E-08 43.5 4.3 36 6-41 32-67 (195)
233 3ec2_A DNA replication protein 97.1 0.00049 1.7E-08 44.5 3.7 27 16-42 37-63 (180)
234 1nks_A Adenylate kinase; therm 97.1 0.00039 1.3E-08 45.0 3.2 22 19-40 3-24 (194)
235 1kag_A SKI, shikimate kinase I 97.1 0.00036 1.2E-08 44.7 3.0 22 19-40 6-27 (173)
236 2pcj_A ABC transporter, lipopr 97.1 0.0004 1.4E-08 47.0 3.3 22 19-40 32-53 (224)
237 3asz_A Uridine kinase; cytidin 97.1 0.00049 1.7E-08 45.5 3.7 25 16-40 5-29 (211)
238 1htw_A HI0065; nucleotide-bind 97.0 0.00038 1.3E-08 44.7 3.0 25 17-41 33-57 (158)
239 3fb4_A Adenylate kinase; psych 97.0 0.00036 1.2E-08 46.4 2.9 21 19-39 2-22 (216)
240 3l82_B F-box only protein 4; T 97.0 0.00058 2E-08 46.3 3.9 32 7-38 6-39 (227)
241 3dl0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 46.3 3.0 21 19-39 2-22 (216)
242 2j37_W Signal recognition part 97.0 0.00097 3.3E-08 50.5 5.5 24 15-38 99-122 (504)
243 2bbw_A Adenylate kinase 4, AK4 97.0 0.00041 1.4E-08 47.3 3.1 21 18-38 28-48 (246)
244 3lw7_A Adenylate kinase relate 97.0 0.0004 1.4E-08 44.1 2.9 19 19-37 3-21 (179)
245 4eun_A Thermoresistant glucoki 97.0 0.00039 1.3E-08 45.9 2.9 23 17-39 29-51 (200)
246 2bdt_A BH3686; alpha-beta prot 97.0 0.00042 1.4E-08 45.2 3.0 21 19-39 4-24 (189)
247 1qhx_A CPT, protein (chloramph 97.0 0.00043 1.5E-08 44.5 3.0 22 19-40 5-26 (178)
248 2rhm_A Putative kinase; P-loop 97.0 0.00058 2E-08 44.4 3.6 23 17-39 5-27 (193)
249 1ly1_A Polynucleotide kinase; 97.0 0.00059 2E-08 43.8 3.6 22 18-39 3-24 (181)
250 2yvu_A Probable adenylyl-sulfa 97.0 0.00061 2.1E-08 44.3 3.7 27 14-40 10-36 (186)
251 3fvq_A Fe(3+) IONS import ATP- 97.0 0.0011 3.6E-08 48.2 5.2 22 19-40 32-53 (359)
252 2jaq_A Deoxyguanosine kinase; 97.0 0.00047 1.6E-08 45.1 3.1 22 19-40 2-23 (205)
253 3t61_A Gluconokinase; PSI-biol 97.0 0.00041 1.4E-08 45.7 2.8 23 18-40 19-41 (202)
254 2onk_A Molybdate/tungstate ABC 97.0 0.00049 1.7E-08 47.2 3.3 22 19-40 26-47 (240)
255 3tlx_A Adenylate kinase 2; str 97.0 0.00058 2E-08 46.6 3.6 25 15-39 27-51 (243)
256 3vaa_A Shikimate kinase, SK; s 97.0 0.0005 1.7E-08 45.3 3.1 22 18-39 26-47 (199)
257 3sr0_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 46.3 2.9 23 19-41 2-24 (206)
258 1b0u_A Histidine permease; ABC 97.0 0.0005 1.7E-08 47.7 3.2 22 19-40 34-55 (262)
259 2ff7_A Alpha-hemolysin translo 96.9 0.00059 2E-08 46.9 3.4 23 19-41 37-59 (247)
260 1mv5_A LMRA, multidrug resista 96.9 0.00061 2.1E-08 46.6 3.5 23 19-41 30-52 (243)
261 3gfo_A Cobalt import ATP-bindi 96.9 0.00054 1.8E-08 47.9 3.2 22 19-40 36-57 (275)
262 1g6h_A High-affinity branched- 96.9 0.00053 1.8E-08 47.4 3.2 23 19-41 35-57 (257)
263 1sgw_A Putative ABC transporte 96.9 0.00057 1.9E-08 46.1 3.2 21 20-40 38-58 (214)
264 2cbz_A Multidrug resistance-as 96.9 0.00054 1.8E-08 46.8 3.1 23 19-41 33-55 (237)
265 2pze_A Cystic fibrosis transme 96.9 0.00064 2.2E-08 46.1 3.5 23 19-41 36-58 (229)
266 2cdn_A Adenylate kinase; phosp 96.9 0.00063 2.1E-08 44.8 3.3 26 14-39 17-42 (201)
267 1kht_A Adenylate kinase; phosp 96.9 0.0006 2E-08 44.1 3.1 22 18-39 4-25 (192)
268 3cm0_A Adenylate kinase; ATP-b 96.9 0.00077 2.6E-08 43.6 3.6 22 17-38 4-25 (186)
269 1aky_A Adenylate kinase; ATP:A 96.9 0.00056 1.9E-08 45.7 3.0 24 16-39 3-26 (220)
270 2plr_A DTMP kinase, probable t 96.9 0.0007 2.4E-08 44.5 3.5 24 18-41 5-28 (213)
271 2p65_A Hypothetical protein PF 96.9 0.00075 2.6E-08 43.2 3.5 35 7-41 33-67 (187)
272 1ji0_A ABC transporter; ATP bi 96.9 0.00061 2.1E-08 46.6 3.2 22 19-40 34-55 (240)
273 1lw7_A Transcriptional regulat 96.9 0.00053 1.8E-08 49.5 3.0 26 17-42 170-195 (365)
274 2i3b_A HCR-ntpase, human cance 96.9 0.00052 1.8E-08 45.4 2.7 24 19-42 3-26 (189)
275 2olj_A Amino acid ABC transpor 96.9 0.00064 2.2E-08 47.2 3.2 22 19-40 52-73 (263)
276 1cke_A CK, MSSA, protein (cyti 96.9 0.00062 2.1E-08 45.4 3.1 23 18-40 6-28 (227)
277 4g1u_C Hemin import ATP-bindin 96.9 0.00063 2.2E-08 47.3 3.1 23 19-41 39-61 (266)
278 2ihy_A ABC transporter, ATP-bi 96.9 0.00072 2.5E-08 47.3 3.5 23 19-41 49-71 (279)
279 1g29_1 MALK, maltose transport 96.9 0.0016 5.5E-08 47.4 5.4 21 20-40 32-52 (372)
280 1e4v_A Adenylate kinase; trans 96.9 0.00063 2.2E-08 45.3 3.0 21 19-39 2-22 (214)
281 1knq_A Gluconate kinase; ALFA/ 96.9 0.00067 2.3E-08 43.6 3.0 22 18-39 9-30 (175)
282 2ixe_A Antigen peptide transpo 96.9 0.00075 2.6E-08 47.0 3.4 23 19-41 47-69 (271)
283 1vpl_A ABC transporter, ATP-bi 96.9 0.0007 2.4E-08 46.8 3.2 22 19-40 43-64 (256)
284 3uie_A Adenylyl-sulfate kinase 96.8 0.00069 2.4E-08 44.7 3.0 27 15-41 23-49 (200)
285 2qi9_C Vitamin B12 import ATP- 96.8 0.00067 2.3E-08 46.8 3.0 22 19-40 28-49 (249)
286 2d2e_A SUFC protein; ABC-ATPas 96.8 0.00068 2.3E-08 46.6 3.0 22 19-40 31-52 (250)
287 1zd8_A GTP:AMP phosphotransfer 96.8 0.00073 2.5E-08 45.4 3.1 22 17-38 7-28 (227)
288 2ehv_A Hypothetical protein PH 96.8 0.00067 2.3E-08 45.8 2.9 20 19-38 32-51 (251)
289 2ghi_A Transport protein; mult 96.8 0.00074 2.5E-08 46.7 3.2 22 19-40 48-69 (260)
290 2zu0_C Probable ATP-dependent 96.8 0.00071 2.4E-08 47.0 3.1 22 19-40 48-69 (267)
291 3trf_A Shikimate kinase, SK; a 96.8 0.00077 2.6E-08 43.6 3.1 22 18-39 6-27 (185)
292 1tev_A UMP-CMP kinase; ploop, 96.8 0.00088 3E-08 43.4 3.4 21 18-38 4-24 (196)
293 4a74_A DNA repair and recombin 96.8 0.00075 2.6E-08 44.9 3.1 21 19-39 27-47 (231)
294 2nq2_C Hypothetical ABC transp 96.8 0.00077 2.6E-08 46.5 3.2 23 19-41 33-55 (253)
295 2if2_A Dephospho-COA kinase; a 96.8 0.00091 3.1E-08 44.0 3.4 21 19-39 3-23 (204)
296 3b85_A Phosphate starvation-in 96.8 0.00066 2.2E-08 45.5 2.6 22 19-40 24-45 (208)
297 2v54_A DTMP kinase, thymidylat 96.8 0.00092 3.1E-08 43.8 3.3 25 17-41 4-28 (204)
298 2eyu_A Twitching motility prot 96.8 0.00074 2.5E-08 46.8 3.0 26 16-41 24-49 (261)
299 2yz2_A Putative ABC transporte 96.8 0.00083 2.9E-08 46.6 3.2 22 19-40 35-56 (266)
300 2rcn_A Probable GTPase ENGC; Y 96.8 0.00086 2.9E-08 48.7 3.2 23 19-41 217-239 (358)
301 1rj9_A FTSY, signal recognitio 96.8 0.00076 2.6E-08 47.8 2.9 25 18-42 103-127 (304)
302 2c95_A Adenylate kinase 1; tra 96.8 0.00094 3.2E-08 43.4 3.2 23 17-39 9-31 (196)
303 1nn5_A Similar to deoxythymidy 96.8 0.00094 3.2E-08 44.1 3.2 25 16-40 8-32 (215)
304 3be4_A Adenylate kinase; malar 96.8 0.00092 3.1E-08 44.7 3.1 23 17-39 5-27 (217)
305 1u0l_A Probable GTPase ENGC; p 96.8 0.00087 3E-08 47.3 3.1 23 19-41 171-193 (301)
306 2qt1_A Nicotinamide riboside k 96.8 0.0013 4.6E-08 43.4 3.9 25 16-40 20-44 (207)
307 2pjz_A Hypothetical protein ST 96.8 0.00098 3.4E-08 46.3 3.3 22 19-40 32-53 (263)
308 1np6_A Molybdopterin-guanine d 96.7 0.00087 3E-08 43.8 2.8 23 19-41 8-30 (174)
309 2wwf_A Thymidilate kinase, put 96.7 0.00098 3.3E-08 44.0 3.1 25 16-40 9-33 (212)
310 1via_A Shikimate kinase; struc 96.7 0.00079 2.7E-08 43.3 2.6 21 19-39 6-26 (175)
311 3lnc_A Guanylate kinase, GMP k 96.7 0.00052 1.8E-08 46.3 1.7 23 19-41 29-52 (231)
312 3zvr_A Dynamin-1; hydrolase, D 96.7 0.0046 1.6E-07 49.1 7.2 24 16-39 50-73 (772)
313 3iij_A Coilin-interacting nucl 96.7 0.00095 3.2E-08 43.1 2.9 22 18-39 12-33 (180)
314 1gvn_B Zeta; postsegregational 96.7 0.0011 3.9E-08 46.4 3.4 26 16-41 32-57 (287)
315 2v9p_A Replication protein E1; 96.7 0.001 3.5E-08 47.2 3.2 25 16-40 125-149 (305)
316 2f1r_A Molybdopterin-guanine d 96.7 0.0005 1.7E-08 44.8 1.4 24 19-42 4-27 (171)
317 3aez_A Pantothenate kinase; tr 96.7 0.0013 4.5E-08 46.7 3.7 28 15-42 88-115 (312)
318 1gtv_A TMK, thymidylate kinase 96.7 0.0004 1.4E-08 45.9 0.9 23 19-41 2-24 (214)
319 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.5E-08 44.7 2.9 21 19-39 2-22 (223)
320 3j25_A Tetracycline resistance 96.7 0.00061 2.1E-08 52.9 2.1 66 19-84 4-82 (638)
321 1ukz_A Uridylate kinase; trans 96.7 0.0015 5E-08 42.9 3.6 24 15-38 13-36 (203)
322 1zak_A Adenylate kinase; ATP:A 96.7 0.0011 3.6E-08 44.4 2.9 22 18-39 6-27 (222)
323 1oxx_K GLCV, glucose, ABC tran 96.7 0.0014 4.8E-08 47.4 3.7 22 19-40 33-54 (353)
324 3rlf_A Maltose/maltodextrin im 96.7 0.0011 3.7E-08 48.6 3.1 22 19-40 31-52 (381)
325 2z0h_A DTMP kinase, thymidylat 96.7 0.0011 3.7E-08 43.2 2.9 23 19-41 2-24 (197)
326 2bbs_A Cystic fibrosis transme 96.7 0.0012 4.1E-08 46.5 3.2 23 19-41 66-88 (290)
327 2it1_A 362AA long hypothetical 96.7 0.0011 3.7E-08 48.2 3.1 22 19-40 31-52 (362)
328 2yv5_A YJEQ protein; hydrolase 96.7 0.001 3.5E-08 47.0 2.9 20 19-38 167-186 (302)
329 3b9q_A Chloroplast SRP recepto 96.7 0.00097 3.3E-08 47.2 2.8 26 17-42 100-125 (302)
330 2yyz_A Sugar ABC transporter, 96.7 0.0011 3.7E-08 48.2 3.0 22 19-40 31-52 (359)
331 1z47_A CYSA, putative ABC-tran 96.7 0.0012 4.1E-08 47.8 3.2 22 19-40 43-64 (355)
332 1odf_A YGR205W, hypothetical 3 96.7 0.0015 5.2E-08 45.9 3.7 29 14-42 28-56 (290)
333 1qf9_A UMP/CMP kinase, protein 96.6 0.0018 6E-08 41.9 3.8 23 17-39 6-28 (194)
334 2pt5_A Shikimate kinase, SK; a 96.6 0.0013 4.5E-08 41.8 3.1 21 19-39 2-22 (168)
335 3umf_A Adenylate kinase; rossm 96.6 0.0011 3.8E-08 44.8 2.9 22 20-41 32-53 (217)
336 3nh6_A ATP-binding cassette SU 96.6 0.00089 3E-08 47.6 2.4 23 19-41 82-104 (306)
337 1jjv_A Dephospho-COA kinase; P 96.6 0.0016 5.4E-08 43.0 3.5 22 18-39 3-24 (206)
338 3tqc_A Pantothenate kinase; bi 96.6 0.0025 8.6E-08 45.6 4.7 27 15-41 90-116 (321)
339 2qm8_A GTPase/ATPase; G protei 96.6 0.0019 6.4E-08 46.3 4.1 24 15-38 53-76 (337)
340 2bwj_A Adenylate kinase 5; pho 96.6 0.0014 4.9E-08 42.7 3.2 22 18-39 13-34 (199)
341 1v43_A Sugar-binding transport 96.6 0.0012 4.1E-08 48.1 3.1 22 19-40 39-60 (372)
342 2x8a_A Nuclear valosin-contain 96.6 0.0018 6.2E-08 45.0 3.9 21 20-40 47-67 (274)
343 1ixz_A ATP-dependent metallopr 96.6 0.0013 4.4E-08 44.8 3.0 21 20-40 52-72 (254)
344 3e70_C DPA, signal recognition 96.6 0.0011 3.8E-08 47.5 2.8 27 16-42 128-154 (328)
345 1y63_A LMAJ004144AAA protein; 96.6 0.0016 5.4E-08 42.4 3.3 25 16-40 9-33 (184)
346 1t9h_A YLOQ, probable GTPase E 96.6 0.00047 1.6E-08 49.0 0.7 24 18-41 174-197 (307)
347 1rz3_A Hypothetical protein rb 96.6 0.002 6.9E-08 42.5 3.8 25 15-39 20-44 (201)
348 3bos_A Putative DNA replicatio 96.6 0.0023 7.7E-08 42.6 4.1 25 16-40 51-75 (242)
349 2ze6_A Isopentenyl transferase 96.6 0.0013 4.4E-08 45.2 2.9 21 20-40 4-24 (253)
350 3tui_C Methionine import ATP-b 96.6 0.0013 4.6E-08 47.8 3.1 22 19-40 56-77 (366)
351 2jeo_A Uridine-cytidine kinase 96.6 0.0018 6.2E-08 44.0 3.6 25 16-40 24-48 (245)
352 2p5t_B PEZT; postsegregational 96.6 0.0011 3.8E-08 45.4 2.5 27 15-41 30-56 (253)
353 3n70_A Transport activator; si 96.6 0.0025 8.5E-08 39.9 3.9 25 16-40 23-47 (145)
354 1ak2_A Adenylate kinase isoenz 96.5 0.0016 5.5E-08 43.9 3.1 24 16-39 15-38 (233)
355 3d31_A Sulfate/molybdate ABC t 96.5 0.00098 3.4E-08 48.2 2.2 22 19-40 28-49 (348)
356 2gza_A Type IV secretion syste 96.5 0.0016 5.4E-08 47.1 3.3 25 18-42 176-200 (361)
357 2chg_A Replication factor C sm 96.5 0.0022 7.5E-08 41.9 3.7 21 19-39 40-60 (226)
358 3jvv_A Twitching mobility prot 96.5 0.0021 7E-08 46.6 3.8 26 16-41 122-147 (356)
359 1e6c_A Shikimate kinase; phosp 96.5 0.0016 5.5E-08 41.5 2.9 21 19-39 4-24 (173)
360 3l2o_B F-box only protein 4; s 96.5 0.0023 7.9E-08 45.4 3.8 27 12-38 96-124 (312)
361 3gd7_A Fusion complex of cysti 96.5 0.0016 5.4E-08 47.8 3.1 22 19-40 49-70 (390)
362 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0019 6.4E-08 46.2 3.4 24 19-42 173-196 (330)
363 2pbr_A DTMP kinase, thymidylat 96.5 0.0018 6E-08 42.0 3.1 23 19-41 2-24 (195)
364 2vp4_A Deoxynucleoside kinase; 96.5 0.0012 4.3E-08 44.5 2.4 26 15-40 18-43 (230)
365 1uf9_A TT1252 protein; P-loop, 96.5 0.0025 8.7E-08 41.6 3.8 24 16-39 7-30 (203)
366 3q5d_A Atlastin-1; G protein, 96.5 0.004 1.4E-07 46.5 5.2 23 16-38 66-88 (447)
367 4eaq_A DTMP kinase, thymidylat 96.5 0.0023 7.8E-08 43.4 3.6 27 16-42 25-51 (229)
368 1vht_A Dephospho-COA kinase; s 96.5 0.0025 8.5E-08 42.4 3.7 23 17-39 4-26 (218)
369 2kjq_A DNAA-related protein; s 96.5 0.0012 4.2E-08 41.8 2.0 24 19-42 38-61 (149)
370 1sq5_A Pantothenate kinase; P- 96.5 0.0025 8.5E-08 45.0 3.8 26 15-40 78-103 (308)
371 3kta_A Chromosome segregation 96.5 0.002 6.9E-08 41.5 3.1 21 19-39 28-48 (182)
372 3h4m_A Proteasome-activating n 96.5 0.0025 8.6E-08 43.9 3.8 26 15-40 49-74 (285)
373 2og2_A Putative signal recogni 96.5 0.0016 5.4E-08 47.3 2.8 26 17-42 157-182 (359)
374 2w0m_A SSO2452; RECA, SSPF, un 96.4 0.0018 6.1E-08 43.0 2.9 20 19-38 25-44 (235)
375 1iy2_A ATP-dependent metallopr 96.4 0.0019 6.5E-08 44.7 3.0 21 20-40 76-96 (278)
376 3a4m_A L-seryl-tRNA(SEC) kinas 96.4 0.0019 6.6E-08 44.4 3.0 23 18-40 5-27 (260)
377 1xjc_A MOBB protein homolog; s 96.4 0.0019 6.4E-08 42.1 2.8 23 19-41 6-28 (169)
378 2vli_A Antibiotic resistance p 96.4 0.0013 4.3E-08 42.4 2.0 23 18-40 6-28 (183)
379 4fn5_A EF-G 1, elongation fact 96.4 0.007 2.4E-07 47.5 6.3 18 19-36 15-32 (709)
380 2iyv_A Shikimate kinase, SK; t 96.4 0.0021 7E-08 41.6 2.9 21 19-39 4-24 (184)
381 1in4_A RUVB, holliday junction 96.4 0.002 6.7E-08 46.0 2.9 22 19-40 53-74 (334)
382 1lv7_A FTSH; alpha/beta domain 96.4 0.0021 7.1E-08 43.9 2.9 24 17-40 45-68 (257)
383 2w58_A DNAI, primosome compone 96.4 0.003 1E-07 41.4 3.5 24 18-41 55-78 (202)
384 2pez_A Bifunctional 3'-phospho 96.4 0.0032 1.1E-07 40.5 3.6 24 17-40 5-28 (179)
385 1njg_A DNA polymerase III subu 96.3 0.0022 7.7E-08 42.3 2.8 23 19-41 47-69 (250)
386 1m7g_A Adenylylsulfate kinase; 96.3 0.0032 1.1E-07 41.8 3.6 27 15-41 23-49 (211)
387 3r20_A Cytidylate kinase; stru 96.3 0.0024 8.3E-08 43.6 2.9 24 16-39 8-31 (233)
388 1d2n_A N-ethylmaleimide-sensit 96.3 0.0063 2.2E-07 41.8 5.1 26 14-39 61-86 (272)
389 2yhs_A FTSY, cell division pro 96.3 0.0021 7.1E-08 48.6 2.8 26 17-42 293-318 (503)
390 1cr0_A DNA primase/helicase; R 96.3 0.0026 8.7E-08 44.4 3.1 22 19-40 37-58 (296)
391 4e22_A Cytidylate kinase; P-lo 96.3 0.0028 9.5E-08 43.4 3.2 22 17-38 27-48 (252)
392 1uj2_A Uridine-cytidine kinase 96.3 0.0034 1.2E-07 42.8 3.5 26 15-40 20-45 (252)
393 1p9r_A General secretion pathw 96.3 0.0045 1.5E-07 45.8 4.3 28 13-40 163-190 (418)
394 1yrb_A ATP(GTP)binding protein 96.2 0.0036 1.2E-07 42.6 3.6 24 15-38 12-35 (262)
395 3szr_A Interferon-induced GTP- 96.2 0.0017 5.6E-08 50.2 2.0 22 20-41 48-69 (608)
396 2cvh_A DNA repair and recombin 96.2 0.0028 9.6E-08 41.8 2.9 21 19-39 22-42 (220)
397 2ewv_A Twitching motility prot 96.2 0.0037 1.3E-07 45.4 3.7 27 16-42 135-161 (372)
398 1n0w_A DNA repair protein RAD5 96.2 0.003 1E-07 42.3 2.9 21 19-39 26-46 (243)
399 3cf0_A Transitional endoplasmi 96.2 0.0044 1.5E-07 43.5 3.8 25 16-40 48-72 (301)
400 2oap_1 GSPE-2, type II secreti 96.2 0.0035 1.2E-07 47.5 3.5 23 19-41 262-284 (511)
401 1yqt_A RNAse L inhibitor; ATP- 96.2 0.0035 1.2E-07 47.7 3.5 24 19-42 49-72 (538)
402 2npi_A Protein CLP1; CLP1-PCF1 96.2 0.003 1E-07 47.2 3.1 22 19-40 140-161 (460)
403 1zuh_A Shikimate kinase; alpha 96.2 0.0033 1.1E-07 40.0 2.9 21 19-39 9-29 (168)
404 3b60_A Lipid A export ATP-bind 96.2 0.0038 1.3E-07 47.8 3.6 23 19-41 371-393 (582)
405 4b4t_M 26S protease regulatory 96.2 0.0048 1.6E-07 45.9 4.0 34 7-40 205-238 (434)
406 3pxg_A Negative regulator of g 96.2 0.0043 1.5E-07 46.3 3.8 35 7-41 191-225 (468)
407 2obl_A ESCN; ATPase, hydrolase 96.2 0.0037 1.3E-07 45.0 3.4 24 17-40 71-94 (347)
408 2p67_A LAO/AO transport system 96.2 0.0053 1.8E-07 44.0 4.1 25 15-39 54-78 (341)
409 3b9p_A CG5977-PA, isoform A; A 96.1 0.0033 1.1E-07 43.7 2.8 24 17-40 54-77 (297)
410 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.0035 1.2E-07 42.5 2.9 23 17-39 39-61 (262)
411 1nij_A Hypothetical protein YJ 96.1 0.0029 9.9E-08 44.9 2.5 20 20-39 7-26 (318)
412 4b4t_L 26S protease subunit RP 96.1 0.0055 1.9E-07 45.6 4.0 33 7-39 205-237 (437)
413 2bjv_A PSP operon transcriptio 96.1 0.0057 1.9E-07 41.8 3.9 24 17-40 29-52 (265)
414 3t15_A Ribulose bisphosphate c 96.1 0.004 1.4E-07 43.6 3.2 25 16-40 35-59 (293)
415 3exa_A TRNA delta(2)-isopenten 96.1 0.0038 1.3E-07 44.6 3.0 25 19-43 5-29 (322)
416 1ltq_A Polynucleotide kinase; 96.1 0.005 1.7E-07 42.9 3.6 22 18-39 3-24 (301)
417 2f6r_A COA synthase, bifunctio 96.1 0.0057 2E-07 42.6 3.9 24 15-38 73-96 (281)
418 4b4t_K 26S protease regulatory 96.0 0.0058 2E-07 45.3 4.0 33 7-39 196-228 (428)
419 3b5x_A Lipid A export ATP-bind 96.0 0.0042 1.4E-07 47.6 3.3 23 19-41 371-393 (582)
420 2dpy_A FLII, flagellum-specifi 96.0 0.0046 1.6E-07 45.9 3.4 25 16-40 156-180 (438)
421 1p5z_B DCK, deoxycytidine kina 96.0 0.0035 1.2E-07 43.0 2.6 26 16-41 23-48 (263)
422 4fcw_A Chaperone protein CLPB; 96.0 0.0061 2.1E-07 42.4 3.9 25 17-41 47-71 (311)
423 2qby_A CDC6 homolog 1, cell di 96.0 0.0044 1.5E-07 44.1 3.1 25 17-41 45-69 (386)
424 3nwj_A ATSK2; P loop, shikimat 96.0 0.0045 1.5E-07 42.6 3.0 22 18-39 49-70 (250)
425 1l8q_A Chromosomal replication 96.0 0.0043 1.5E-07 43.7 2.9 23 19-41 39-61 (324)
426 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0046 1.6E-07 39.1 2.8 19 20-38 26-44 (149)
427 3foz_A TRNA delta(2)-isopenten 96.0 0.0043 1.5E-07 44.2 2.9 25 18-42 11-35 (316)
428 3ozx_A RNAse L inhibitor; ATP 96.0 0.0046 1.6E-07 47.1 3.2 27 16-42 24-50 (538)
429 3zvl_A Bifunctional polynucleo 95.9 0.005 1.7E-07 45.3 3.3 25 16-40 257-281 (416)
430 3a8t_A Adenylate isopentenyltr 95.9 0.0062 2.1E-07 43.8 3.7 25 18-42 41-65 (339)
431 3euj_A Chromosome partition pr 95.9 0.0046 1.6E-07 46.6 3.0 22 19-40 31-52 (483)
432 2ga8_A Hypothetical 39.9 kDa p 95.9 0.012 3.9E-07 42.8 5.0 25 14-38 21-45 (359)
433 1fnn_A CDC6P, cell division co 95.9 0.005 1.7E-07 44.0 3.1 23 19-41 46-68 (389)
434 2dr3_A UPF0273 protein PH0284; 95.9 0.0052 1.8E-07 41.2 3.0 19 19-37 25-43 (247)
435 3te6_A Regulatory protein SIR3 95.9 0.0049 1.7E-07 44.0 3.0 34 7-40 35-68 (318)
436 2yl4_A ATP-binding cassette SU 95.9 0.0041 1.4E-07 47.8 2.7 23 19-41 372-394 (595)
437 3j16_B RLI1P; ribosome recycli 95.9 0.0053 1.8E-07 47.5 3.3 24 19-42 105-128 (608)
438 3syl_A Protein CBBX; photosynt 95.9 0.0061 2.1E-07 42.4 3.4 25 15-39 65-89 (309)
439 1ofh_A ATP-dependent HSL prote 95.9 0.0054 1.8E-07 42.5 3.0 23 17-39 50-72 (310)
440 4b4t_J 26S protease regulatory 95.9 0.0061 2.1E-07 44.9 3.4 33 7-39 172-204 (405)
441 1nlf_A Regulatory protein REPA 95.9 0.0054 1.8E-07 42.4 3.0 20 19-38 32-51 (279)
442 1q3t_A Cytidylate kinase; nucl 95.8 0.0059 2E-07 41.2 3.1 25 15-39 14-38 (236)
443 3qf4_B Uncharacterized ABC tra 95.8 0.0046 1.6E-07 47.5 2.8 23 19-41 383-405 (598)
444 3crm_A TRNA delta(2)-isopenten 95.8 0.0054 1.8E-07 43.9 3.0 24 18-41 6-29 (323)
445 2px0_A Flagellar biosynthesis 95.8 0.0054 1.9E-07 43.2 2.9 26 17-42 105-130 (296)
446 3v9p_A DTMP kinase, thymidylat 95.8 0.0042 1.4E-07 42.2 2.3 27 16-42 24-50 (227)
447 1vma_A Cell division protein F 95.8 0.0051 1.7E-07 43.6 2.8 26 17-42 104-129 (306)
448 4a82_A Cystic fibrosis transme 95.8 0.0037 1.3E-07 47.9 2.2 23 19-41 369-391 (578)
449 3bk7_A ABC transporter ATP-bin 95.8 0.0064 2.2E-07 47.0 3.5 24 19-42 119-142 (607)
450 3d3q_A TRNA delta(2)-isopenten 95.8 0.0058 2E-07 44.0 3.0 24 18-41 8-31 (340)
451 2ocp_A DGK, deoxyguanosine kin 95.8 0.0083 2.8E-07 40.6 3.7 24 18-41 3-26 (241)
452 1svm_A Large T antigen; AAA+ f 95.8 0.0058 2E-07 44.6 3.0 25 16-40 168-192 (377)
453 1sxj_D Activator 1 41 kDa subu 95.8 0.0086 2.9E-07 42.3 3.9 21 20-40 61-81 (353)
454 1sxj_E Activator 1 40 kDa subu 95.7 0.0049 1.7E-07 43.7 2.5 20 20-39 39-58 (354)
455 3co5_A Putative two-component 95.7 0.0037 1.3E-07 39.1 1.6 24 16-39 26-49 (143)
456 2qmh_A HPR kinase/phosphorylas 95.7 0.0067 2.3E-07 40.6 2.8 22 18-39 35-56 (205)
457 2qen_A Walker-type ATPase; unk 95.7 0.0067 2.3E-07 42.6 3.0 20 19-38 33-52 (350)
458 3ake_A Cytidylate kinase; CMP 95.7 0.0068 2.3E-07 39.6 2.9 21 19-39 4-24 (208)
459 3uk6_A RUVB-like 2; hexameric 95.7 0.0078 2.7E-07 42.9 3.3 24 18-41 71-94 (368)
460 3qf4_A ABC transporter, ATP-bi 95.7 0.0054 1.9E-07 47.1 2.6 23 19-41 371-393 (587)
461 2fna_A Conserved hypothetical 95.7 0.007 2.4E-07 42.5 3.0 20 19-38 32-51 (357)
462 2v1u_A Cell division control p 95.7 0.0059 2E-07 43.5 2.6 25 16-40 43-67 (387)
463 3pxi_A Negative regulator of g 95.6 0.0091 3.1E-07 47.0 3.8 36 6-41 190-225 (758)
464 1xwi_A SKD1 protein; VPS4B, AA 95.6 0.0067 2.3E-07 43.0 2.8 23 18-40 46-68 (322)
465 1sxj_C Activator 1 40 kDa subu 95.6 0.01 3.5E-07 42.1 3.8 20 20-39 49-68 (340)
466 1r6b_X CLPA protein; AAA+, N-t 95.6 0.012 4E-07 46.3 4.4 36 6-41 196-231 (758)
467 4edh_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 40.5 2.9 25 18-42 7-31 (213)
468 1yqt_A RNAse L inhibitor; ATP- 95.6 0.009 3.1E-07 45.5 3.5 24 19-42 314-337 (538)
469 3qf7_A RAD50; ABC-ATPase, ATPa 95.6 0.0076 2.6E-07 43.6 3.0 19 20-38 26-44 (365)
470 3ozx_A RNAse L inhibitor; ATP 95.6 0.0079 2.7E-07 45.8 3.2 23 19-41 296-318 (538)
471 1ojl_A Transcriptional regulat 95.6 0.012 4.2E-07 41.4 4.0 25 16-40 24-48 (304)
472 3pfi_A Holliday junction ATP-d 95.6 0.0075 2.6E-07 42.6 2.9 23 18-40 56-78 (338)
473 4b4t_I 26S protease regulatory 95.6 0.011 3.7E-07 44.0 3.8 32 8-39 207-238 (437)
474 3eie_A Vacuolar protein sortin 95.6 0.0075 2.6E-07 42.6 2.9 23 17-39 51-73 (322)
475 2qby_B CDC6 homolog 3, cell di 95.6 0.016 5.5E-07 41.4 4.6 22 18-39 46-67 (384)
476 2r62_A Cell division protease 95.5 0.0039 1.3E-07 42.6 1.3 22 19-40 46-67 (268)
477 3bk7_A ABC transporter ATP-bin 95.5 0.01 3.4E-07 45.9 3.5 24 19-42 384-407 (607)
478 4b4t_H 26S protease regulatory 95.5 0.01 3.5E-07 44.5 3.4 33 7-39 233-265 (467)
479 3gmt_A Adenylate kinase; ssgci 95.5 0.0091 3.1E-07 40.7 2.9 25 16-40 7-31 (230)
480 2r8r_A Sensor protein; KDPD, P 95.5 0.013 4.5E-07 39.9 3.6 22 15-36 4-25 (228)
481 1pzn_A RAD51, DNA repair and r 95.4 0.0094 3.2E-07 42.9 3.0 21 19-39 133-153 (349)
482 3eph_A TRNA isopentenyltransfe 95.4 0.011 3.9E-07 43.5 3.4 24 19-42 4-27 (409)
483 1um8_A ATP-dependent CLP prote 95.4 0.0096 3.3E-07 42.9 3.0 24 17-40 72-95 (376)
484 4f4c_A Multidrug resistance pr 95.4 0.0086 2.9E-07 50.1 3.1 37 19-71 1107-1143(1321)
485 3lv8_A DTMP kinase, thymidylat 95.4 0.01 3.5E-07 40.5 2.9 25 18-42 28-52 (236)
486 3m6a_A ATP-dependent protease 95.4 0.0089 3E-07 45.5 2.9 22 19-40 110-131 (543)
487 3hws_A ATP-dependent CLP prote 95.4 0.0099 3.4E-07 42.6 3.0 24 17-40 51-74 (363)
488 1tf7_A KAIC; homohexamer, hexa 95.4 0.0098 3.4E-07 45.0 3.1 18 19-36 41-58 (525)
489 2ce7_A Cell division protein F 95.3 0.015 5.3E-07 43.6 4.0 23 18-40 50-72 (476)
490 2z4s_A Chromosomal replication 95.3 0.0099 3.4E-07 44.0 2.9 23 19-41 132-154 (440)
491 2qp9_X Vacuolar protein sortin 95.3 0.01 3.5E-07 42.7 2.9 23 18-40 85-107 (355)
492 1tue_A Replication protein E1; 95.3 0.0085 2.9E-07 40.3 2.3 21 19-39 60-80 (212)
493 1a7j_A Phosphoribulokinase; tr 95.3 0.005 1.7E-07 43.2 1.2 23 17-39 5-27 (290)
494 3d8b_A Fidgetin-like protein 1 95.3 0.01 3.5E-07 42.6 2.9 24 16-39 116-139 (357)
495 3j16_B RLI1P; ribosome recycli 95.3 0.011 3.9E-07 45.6 3.2 23 20-42 381-403 (608)
496 3qks_A DNA double-strand break 95.3 0.011 3.7E-07 39.2 2.8 19 20-38 26-44 (203)
497 3tmk_A Thymidylate kinase; pho 95.3 0.012 4E-07 39.7 3.0 26 17-42 5-30 (216)
498 2qgz_A Helicase loader, putati 95.3 0.011 3.8E-07 41.7 2.9 26 17-42 152-177 (308)
499 1ypw_A Transitional endoplasmi 95.3 0.0092 3.1E-07 47.5 2.6 26 15-40 236-261 (806)
500 2grj_A Dephospho-COA kinase; T 95.2 0.018 6.3E-07 37.9 3.7 25 16-40 11-35 (192)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.89 E-value=3.8e-23 Score=141.16 Aligned_cols=98 Identities=22% Similarity=0.446 Sum_probs=70.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
-+++||+++|++|||||||++| +.+.|..++. ||++.++. .+..++ +++++|||+||++|+.+++.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~--------~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~ 82 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSY 82 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC------------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHH
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcC--------CccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHH
Confidence 4679999999999999999999 7899998887 99998875 344444 88999999999999998876
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.||+++..|+..+ ......+++++.+-
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i--~~~~~~~~piilVg 125 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVG 125 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHH--HHHHTTSSEEEEEE
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHH--HHhcCCCCeEEEEe
Confidence 999999999999999987 22233455555554
No 2
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1e-21 Score=130.13 Aligned_cols=96 Identities=34% Similarity=0.568 Sum_probs=79.6
Q ss_pred ChhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 1 MYTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 1 m~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
|+++++++++ +++++.+||+++|++|||||||+++ +.+.+. ++. ||++.....+..+++.+.+||++|+
T Consensus 1 m~~~~~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~ 70 (187)
T 1zj6_A 1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTS--------PTIGSNVEEIVINNTRFLMWDIGGQ 70 (187)
T ss_dssp -CHHHHHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEE--------CCSCSSCEEEEETTEEEEEEECCC-
T ss_pred CchHHHHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCc--------CCCccceEEEEECCEEEEEEECCCC
Confidence 8889999999 8888999999999999999999999 556655 444 8888887788888999999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++++.++.. |.++..||+++..|+..+
T Consensus 71 ~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 109 (187)
T 1zj6_A 71 ESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKM 109 (187)
T ss_dssp ---CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHH
T ss_pred HhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999888765 999999999999888776
No 3
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.87 E-value=2.9e-21 Score=127.01 Aligned_cols=97 Identities=31% Similarity=0.518 Sum_probs=80.4
Q ss_pred ChhhHHHHHhhhcc-CceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 1 MYTLVSGFYKYMLR-KDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
|+++++++++.+|. ++.+||+++|++|||||||++++ .+.+ ..+. ||++.....+..++..+.+||++|
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G 71 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEV-VTTK--------PTIGFNVETLSYKNLKLNVWDLGG 71 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEEC--------SSTTCCEEEEEETTEEEEEEEEC-
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCc-CccC--------CcCccceEEEEECCEEEEEEECCC
Confidence 88999999999998 89999999999999999999994 4555 4554 899888778888889999999999
Q ss_pred cccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 79 QLELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 79 ~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+++++..+.. |.++..+|+++..|+..+
T Consensus 72 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 111 (183)
T 1moz_A 72 QTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLM 111 (183)
T ss_dssp ---CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHH
T ss_pred CHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 9998887766 889999999999888776
No 4
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.85 E-value=5e-21 Score=126.83 Aligned_cols=97 Identities=29% Similarity=0.440 Sum_probs=79.7
Q ss_pred ChhhHHHHHh--hhcc-CceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEEC
Q psy9521 1 MYTLVSGFYK--YMLR-KDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76 (125)
Q Consensus 1 m~~~~~~~~~--~~~~-~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~ 76 (125)
|+++++++++ .+|. ++.+||+++|++|||||||++++ .+.+.. +. ||++.....+..++..+.+||+
T Consensus 3 m~~~~~~~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~~Dt 73 (189)
T 2x77_A 3 MGAWLASLKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TV--------PTVGVNLETLQYKNISFEVWDL 73 (189)
T ss_dssp ---CCSCHHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCSCCEE-EC--------SSTTCCEEEEEETTEEEEEEEE
T ss_pred hHHHHHHHHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcCCCCC-cC--------CCCceEEEEEEECCEEEEEEEC
Confidence 7777888888 6677 88999999999999999999995 555543 34 8888887788888999999999
Q ss_pred CCcccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 77 GGQLELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 77 ~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+|+++++.++.. |.+++.+|+++..|+..+
T Consensus 74 ~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 115 (189)
T 2x77_A 74 GGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYAL 115 (189)
T ss_dssp CCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHH
T ss_pred CCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999887765 999999999998887765
No 5
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.84 E-value=2.5e-20 Score=123.04 Aligned_cols=96 Identities=33% Similarity=0.560 Sum_probs=70.6
Q ss_pred hhhHHHHHhhhcc-CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 2 YTLVSGFYKYMLR-KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~-~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
.++++ +++.++. ++.+||+++|++|||||||++++.+.....+. ||++.....+..++..+.+||++|++
T Consensus 3 mg~~~-~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~Dt~G~~ 73 (186)
T 1ksh_A 3 MGLLT-ILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTIS--------PTLGFNIKTLEHRGFKLNIWDVGGQK 73 (186)
T ss_dssp ---------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCC--------CCSSEEEEEEEETTEEEEEEEECCSH
T ss_pred cchhH-HHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCccc--------ccCccceEEEEECCEEEEEEECCCCH
Confidence 33444 6777776 78999999999999999999995433244444 89998888888889999999999999
Q ss_pred cccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 81 ELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 81 ~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+++..+.. |++++.+|+++..|+..+
T Consensus 74 ~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~ 111 (186)
T 1ksh_A 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSL 111 (186)
T ss_dssp HHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 98877766 999999999998887765
No 6
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.83 E-value=5.8e-20 Score=122.33 Aligned_cols=112 Identities=22% Similarity=0.379 Sum_probs=75.2
Q ss_pred ChhhHHHHHhhh-ccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC
Q psy9521 1 MYTLVSGFYKYM-LRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78 (125)
Q Consensus 1 m~~~~~~~~~~~-~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G 78 (125)
|+.++.++.+.+ +..+.+||+++|++|||||||++++ .+.+ .++. ||++.+...+..+++.+.+||++|
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G 76 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRL-ATLQ--------PTWHPTSEELAIGNIKFTTFDLGG 76 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCC-CCCC--------CCCSCEEEEEEETTEEEEEEECCC
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCC-Cccc--------cCCCCCeEEEEECCEEEEEEECCC
Confidence 455666666666 4567899999999999999999995 4444 3444 888888778888899999999999
Q ss_pred cccccccccc------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 79 QLELQSLWDK------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 79 ~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
+++++.++.. |++++.||+++..|+.++ .......+.|++.+.
T Consensus 77 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~~~~~~~~~piilv~ 131 (190)
T 1m2o_B 77 HIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDAL-FNIAELKDVPFVILG 131 (190)
T ss_dssp SGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHH-HTCGGGTTCCEEEEE
T ss_pred CHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHH-HcchhhcCCCEEEEE
Confidence 9999887765 999999999999998877 222222344555443
No 7
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.83 E-value=1.6e-20 Score=125.28 Aligned_cols=96 Identities=27% Similarity=0.508 Sum_probs=75.0
Q ss_pred hhhHHHHHhhhccCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 2 YTLVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
|+++..+++.++.++.+||+++|++|||||||++++ .+.+. ++. ||++.....+..+++.+.+||++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~~ 84 (192)
T 2b6h_A 14 LVPRGSLFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTI--------PTIGFNVETVEYKNICFTVWDVGGQD 84 (192)
T ss_dssp ---CCCGGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEE--------EETTEEEEEEEETTEEEEEEECC---
T ss_pred cchHHHHHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccC--------CcCceeEEEEEECCEEEEEEECCCCH
Confidence 345567888888999999999999999999999995 55554 333 89998777788888999999999999
Q ss_pred cccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 81 ELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 81 ~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+++.++.. |++++.+|+++..|+..+
T Consensus 85 ~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~ 122 (192)
T 2b6h_A 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKM 122 (192)
T ss_dssp --CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 99887765 999999999999888765
No 8
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.82 E-value=6.5e-20 Score=122.91 Aligned_cols=94 Identities=28% Similarity=0.407 Sum_probs=70.3
Q ss_pred HHHHHhhh-ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 5 VSGFYKYM-LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 5 ~~~~~~~~-~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
+.++++.+ +..+.+||+++|++|||||||++++.+.....+. ||++.+...+..+++.+.+||++|+++++
T Consensus 12 ~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~--------~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 12 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV--------PTLHPTSEELTIAGMTFTTFDLGGHIQAR 83 (198)
T ss_dssp -CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC--------------CCCCCSCEEEEETTEEEEEEEECC----C
T ss_pred HHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccC--------CCCCceeEEEEECCEEEEEEECCCcHhhH
Confidence 33455555 5578899999999999999999995433223444 88888777888889999999999999998
Q ss_pred ccccc------------cccCccCHHHHHHHHhhh
Q psy9521 84 SLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 84 ~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.++.. |++++.+|+++..|+..+
T Consensus 84 ~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~ 118 (198)
T 1f6b_A 84 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSL 118 (198)
T ss_dssp CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 88765 999999999999998876
No 9
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.81 E-value=1.9e-19 Score=118.89 Aligned_cols=91 Identities=31% Similarity=0.532 Sum_probs=74.8
Q ss_pred HHhhhcc--CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 8 FYKYMLR--KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 8 ~~~~~~~--~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
+++.++. .+.+||+++|++|||||||++++.+.....+. ||.|.+...+..+++.+.+||++|+++++..
T Consensus 5 ~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~--------~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 76 (181)
T 1fzq_A 5 ILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHIT--------PTQGFNIKSVQSQGFKLNVWDIGGQRKIRPY 76 (181)
T ss_dssp HHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE--------EETTEEEEEEEETTEEEEEEECSSCGGGHHH
T ss_pred HHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCccc--------CcCCeEEEEEEECCEEEEEEECCCCHHHHHH
Confidence 4445555 67899999999999999999996554444444 8999887788888999999999999999877
Q ss_pred ccc------------cccCccCHHHHHHHHhhh
Q psy9521 86 WDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 86 ~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
|.. |++++.+|+++..|+..+
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 109 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTEL 109 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 654 999999999998887754
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=9.3e-19 Score=116.04 Aligned_cols=87 Identities=30% Similarity=0.589 Sum_probs=74.1
Q ss_pred hccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--
Q psy9521 12 MLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.++.+||+++|++|||||||+++ +.+.+...+. ||++.++..+...++.+.+||++|+++++.++..
T Consensus 17 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 88 (188)
T 1zd9_A 17 RGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMI--------PTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYC 88 (188)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------CCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHH
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccC--------CCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 3557899999999999999999999 5666666665 9999998888888899999999999998877655
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 89 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~ 116 (188)
T 1zd9_A 89 RGVSAIVYMVDAADQEKIEASKNELHNL 116 (188)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999888765
No 11
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=5.2e-18 Score=110.05 Aligned_cols=83 Identities=30% Similarity=0.488 Sum_probs=70.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc-----
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
++.+||+++|++|||||||++++ .+.+. ++. ||++.....+..++..+.+||++|+++++.++..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~--------~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 75 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTI--------PTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNT 75 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCC--------CCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcC--------CcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccC
Confidence 46799999999999999999995 55543 333 8889888888888999999999999999888765
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|.+++.+|+++..|+..+
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~ 100 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAM 100 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999998887765
No 12
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.76 E-value=3e-18 Score=110.58 Aligned_cols=80 Identities=30% Similarity=0.574 Sum_probs=67.5
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc--------
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK-------- 88 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~-------- 88 (125)
+||+++|++|||||||+++ +.+.+.. +. ||++.....+..+++.+.+||++|+++++.++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TI--------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL 71 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CC--------CCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-cc--------CcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEE
Confidence 5899999999999999999 5566543 33 8888777777778899999999999998877655
Q ss_pred ----cccCccCHHHHHHHHhhh
Q psy9521 89 ----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 72 i~v~d~~~~~s~~~~~~~~~~~ 93 (164)
T 1r8s_A 72 IFVVDSNDRERVNEAREELMRM 93 (164)
T ss_dssp EEEEETTCGGGHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999888765
No 13
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.76 E-value=3.7e-18 Score=112.45 Aligned_cols=84 Identities=37% Similarity=0.569 Sum_probs=69.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
..+.+||+++|++|||||||+++ +.+.+ ..+. +|.+..+..+..++..+.+||++|+++++.++..
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTS--------PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEE--------CCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTT
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccC--------CcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhcc
Confidence 35789999999999999999999 55555 4444 8888888888888999999999999999887766
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+++..|+..+
T Consensus 89 ~d~ii~v~D~~~~~s~~~~~~~~~~~ 114 (181)
T 2h17_A 89 TEFVIVVVDSTDRERISVTREELYKM 114 (181)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999998887765
No 14
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.76 E-value=3.8e-18 Score=113.36 Aligned_cols=85 Identities=28% Similarity=0.519 Sum_probs=71.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhcccc-ccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTK-NYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
.....||+++|++|||||||+++ +.+.+.. ++. ||++..+..+...++.+.+||++|+++++.++..
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 85 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHIT--------ATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD 85 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCC--------CCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccc--------cccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHh
Confidence 35788999999999999999999 5666666 555 9999888888888899999999999999888776
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 86 ~~d~ii~v~D~~~~~s~~~~~~~~~~~ 112 (199)
T 4bas_A 86 NIDAVIFVVDSSDHLRLCVVKSEIQAM 112 (199)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred cCCEEEEEEECCcHHHHHHHHHHHHHH
Confidence 999999999999888876
No 15
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.76 E-value=4.2e-18 Score=115.36 Aligned_cols=98 Identities=22% Similarity=0.250 Sum_probs=76.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..+ .+.+.+||++|+++++.++..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 96 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--------PTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCY 96 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------CCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC--------CeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHc
Confidence 4689999999999999999999 6777777776 89988875 33333 388999999999999888876
Q ss_pred ----------cccCccCHHH-HHHHHhhhcccccCCCCeEEEEeec
Q psy9521 89 ----------DIRDCMGVRE-VKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 ----------Di~~~~s~~~-i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++.||++ +..|+..+ .....+.+++.+..
T Consensus 97 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i---~~~~~~~piilv~n 139 (214)
T 3q3j_B 97 SDSDAVLLCFDISRPETVDSALKKWRTEI---LDYCPSTRVLLIGC 139 (214)
T ss_dssp TTCSEEEEEEETTCTHHHHHHHTHHHHHH---HHHCTTSEEEEEEE
T ss_pred CCCeEEEEEEECcCHHHHHHHHHHHHHHH---HHhCCCCCEEEEEE
Confidence 9999999999 68899988 22224556555543
No 16
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.76 E-value=7.4e-18 Score=110.58 Aligned_cols=84 Identities=21% Similarity=0.288 Sum_probs=70.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. ||.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 75 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYD--------PTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYS 75 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGT
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHH
Confidence 4689999999999999999999 6677777776 88887764 445555 78899999999998877665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+.+..|+..+
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (181)
T 3t5g_A 76 IDINGYILVYSVTSIKSFEVIKVIHGKL 103 (181)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 17
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.76 E-value=6.6e-18 Score=111.48 Aligned_cols=85 Identities=27% Similarity=0.369 Sum_probs=69.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
....+||+++|++|||||||+++ +.+.+...+. ||++..+. .+..++ +.+.+||++|+++|+.++..
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 75 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLS 75 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------CCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGG
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhh
Confidence 35689999999999999999999 6677766666 88877764 444443 78999999999999887765
Q ss_pred -----------cccCccCHHHH-HHHHhhh
Q psy9521 89 -----------DIRDCMGVREV-KPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i-~~~l~~~ 106 (125)
|++++.+|+++ ..|+.++
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i 105 (184)
T 1m7b_A 76 YPDSDAVLICFDISRPETLDSVLKKWKGEI 105 (184)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999 6798877
No 18
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.75 E-value=6.9e-18 Score=111.80 Aligned_cols=85 Identities=28% Similarity=0.492 Sum_probs=70.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hhc-cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KTK-FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
..+.+||+++|++|||||||++++ .+. +..++. +|++.....+..++..+.+||++|+++++.++..
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 89 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNIL--------PTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYK 89 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCC--------CCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcC--------CccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHh
Confidence 357899999999999999999995 444 455555 8999887788888899999999999999887765
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+|+++..|+..+
T Consensus 90 ~~d~ii~v~d~~~~~s~~~~~~~~~~~ 116 (190)
T 2h57_A 90 EGQAIIFVIDSSDRLRMVVAKEELDTL 116 (190)
T ss_dssp GCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 889999999998887765
No 19
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.75 E-value=6.3e-18 Score=111.99 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=68.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+++||+++|++|||||||+++ +.+.|...+. ||.+.....+..++ +.+.+||++|+++++.+...
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 88 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEES--------PEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDA 88 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCC--------TTCEEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------CCcceEEEEEEECCEEEEEEEEECCCChhhheecCCCE
Confidence 45789999999999999999999 7777777665 77543334566666 78899999999987733322
Q ss_pred -----cccCccCHHHHHHHHhhh
Q psy9521 89 -----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i 111 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRL 111 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999987
No 20
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.75 E-value=1.1e-17 Score=111.17 Aligned_cols=85 Identities=21% Similarity=0.301 Sum_probs=70.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.++.+||+++|++|||||||+++ +.+.+...+. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 91 (194)
T 3reg_A 20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV--------PTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLS 91 (194)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--------CCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGG
T ss_pred cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccC--------CeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhh
Confidence 35789999999999999999999 6677766666 88888875 344454 67899999999999888776
Q ss_pred -----------cccCccCHHHH-HHHHhhh
Q psy9521 89 -----------DIRDCMGVREV-KPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i-~~~l~~~ 106 (125)
|++++.+|+++ ..|+..+
T Consensus 92 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 121 (194)
T 3reg_A 92 YADSDVVLLCFAVNNRTSFDNISTKWEPEI 121 (194)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred ccCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999998 5788877
No 21
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1.6e-17 Score=107.42 Aligned_cols=83 Identities=22% Similarity=0.386 Sum_probs=68.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
+.+||+++|++|||||||+++ +.+.+...+. ||.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 73 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--------PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYY 73 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhh
Confidence 468999999999999999999 6666666655 88887653 445544 78999999999998887665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+++++..|+..+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 101 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKEL 101 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHH
Confidence 999999999999999877
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.74 E-value=1.1e-17 Score=112.49 Aligned_cols=97 Identities=22% Similarity=0.361 Sum_probs=75.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 95 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQG--------ATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSY 95 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 4578999999999999999999 6677666655 88887764 455555 78999999999998876655
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|+++..+|+++..|+..+ ........+++.+
T Consensus 96 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i--~~~~~~~~piilv 137 (201)
T 2ew1_A 96 YRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLV 137 (201)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHH--HHHSCTTCEEEEE
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcCCCCCEEEE
Confidence 999999999999999887 2222334454444
No 23
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.74 E-value=9.3e-18 Score=108.33 Aligned_cols=83 Identities=17% Similarity=0.338 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+++||+++|++|||||||+++ +.+.+..++. ||.+..+. .+..+ ++.+.+||++|++++..++..
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 73 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYD--------PTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMK 73 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCC--------CCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhc
Confidence 468999999999999999999 6666666665 88877664 33444 378999999999999887765
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 74 ~~d~~i~v~d~~~~~s~~~~~~~~~~i 100 (167)
T 1c1y_A 74 NGQGFALVYSITAQSTFNDLQDLREQI 100 (167)
T ss_dssp HCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999988776
No 24
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=110.02 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=66.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
...+.+||+++|++|||||||+++ +.+.|..++. ||++..+. .+..++ +.+.+||++|+++++.+...
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 88 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYD--------PNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERY 88 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHH
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccC--------CCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHH
Confidence 345789999999999999999999 6677777776 88887764 344444 78999999999988764222
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+.++
T Consensus 89 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~i 117 (187)
T 3c5c_A 89 LNWAHAFLVVYSVDSRQSFDSSSSYLELL 117 (187)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 25
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.74 E-value=2.1e-17 Score=107.91 Aligned_cols=84 Identities=20% Similarity=0.366 Sum_probs=70.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+..++. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~ 78 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYD--------PTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYM 78 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCC--------TTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccC--------CCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHH
Confidence 4679999999999999999999 6666666665 88887765 455555 68999999999999887765
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 79 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 106 (181)
T 2fn4_A 79 RAGHGFLLVFAINDRQSFNEVGKLFTQI 106 (181)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 26
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.74 E-value=1.8e-17 Score=107.11 Aligned_cols=97 Identities=21% Similarity=0.316 Sum_probs=74.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..+ ++.+.+||++|+++++.++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 75 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQE--------STIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHh
Confidence 4689999999999999999999 5666666555 78777654 44444 478999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|++++.+|+++..|+..+ ......+++++.+
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~--~~~~~~~~~iilv 117 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKEL--QRQASPNIVIALS 117 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHH--HHHSCTTCEEEEE
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHH--HHhcCCCCcEEEE
Confidence 999999999999998876 1222344555443
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.74 E-value=1.5e-17 Score=109.25 Aligned_cols=85 Identities=16% Similarity=0.288 Sum_probs=70.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 86 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--------PTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQY 86 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHH
Confidence 45789999999999999999999 6666666666 78776664 444554 67888999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 87 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 115 (183)
T 3kkq_A 87 MRTGDGFLIVYSVTDKASFEHVDRFHQLI 115 (183)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 28
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.74 E-value=1.5e-17 Score=112.06 Aligned_cols=97 Identities=25% Similarity=0.341 Sum_probs=74.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
...+||+++|++|||||||+++ +.+.+..++. ||++..+. .+..++ +.+.+||++|+++|+.++..
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 97 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV--------PTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSY 97 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------CCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGC
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------CccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhc
Confidence 5689999999999999999999 6677766666 88887764 444443 88999999999999887765
Q ss_pred ----------cccCccCHHHH-HHHHhhhcccccCCCCeEEEEee
Q psy9521 89 ----------DIRDCMGVREV-KPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 ----------Di~~~~s~~~i-~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.+|+++ ..|+.++ .... .+.+++.+.
T Consensus 98 ~~~d~~ilv~D~~~~~s~~~~~~~~~~~i-~~~~--~~~piilv~ 139 (205)
T 1gwn_A 98 PDSDAVLICFDISRPETLDSVLKKWKGEI-QEFC--PNTKMLLVG 139 (205)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHH-HHHC--TTCEEEEEE
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHH-HHHC--CCCCEEEEE
Confidence 99999999999 6898887 2222 345555543
No 29
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.74 E-value=8.2e-18 Score=112.77 Aligned_cols=84 Identities=21% Similarity=0.402 Sum_probs=63.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+..++. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQG--------STIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSY 98 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC------------------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCC--------CCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH
Confidence 4578999999999999999999 5667766665 88876653 556665 79999999999999887665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 99 ~~~~d~iilv~D~~~~~s~~~~~~~~~~i 127 (201)
T 2hup_A 99 YRSANGAILAYDITKRSSFLSVPHWIEDV 127 (201)
T ss_dssp HTTCSEEEEEEETTBHHHHHTHHHHHHHH
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 30
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.74 E-value=1.2e-17 Score=112.37 Aligned_cols=84 Identities=23% Similarity=0.303 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+..++. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 78 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYI--------PTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSY 78 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------CSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCC--------CccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhc
Confidence 4689999999999999999999 6677776666 88877664 444544 79999999999999888765
Q ss_pred ----------cccCccCHHHHH-HHHhhh
Q psy9521 89 ----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 79 ~~~d~~ilv~d~~~~~s~~~~~~~~~~~~ 107 (212)
T 2j0v_A 79 RGADIFVLAFSLISKASYENVLKKWMPEL 107 (212)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999997 798887
No 31
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.73 E-value=1.3e-17 Score=108.01 Aligned_cols=84 Identities=30% Similarity=0.421 Sum_probs=63.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 75 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--------TTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIY 75 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--------CCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--------CccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHH
Confidence 4678999999999999999999 5566666555 88887764 444444 78999999999988877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+++++..|+..+
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 104 (170)
T 1z08_A 76 YRDSNGAILVYDITDEDSFQKVKNWVKEL 104 (170)
T ss_dssp STTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 32
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.73 E-value=5.2e-18 Score=111.47 Aligned_cols=84 Identities=21% Similarity=0.466 Sum_probs=49.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+..++. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 77 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFI--------STIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAY 77 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHH--------HHHCEEEEEEEEEETTEEEEEEEEEC---------CCTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHH
Confidence 3578999999999999999999 5566665555 88887764 456666 88999999999998887665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 78 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 106 (183)
T 2fu5_C 78 YRGAMGIMLVYDITNEKSFDNIRNWIRNI 106 (183)
T ss_dssp TTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 33
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.73 E-value=2.6e-17 Score=107.51 Aligned_cols=84 Identities=29% Similarity=0.533 Sum_probs=68.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|++++..++..
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 78 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--------TTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTY 78 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCT--------TTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccC--------CCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHH
Confidence 4678999999999999999999 5566665555 77776654 556666 88999999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+++++..|+..+
T Consensus 79 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 107 (181)
T 3tw8_B 79 YRGTHGVIVVYDVTSAESFVNVKRWLHEI 107 (181)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 34
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=2.1e-17 Score=108.69 Aligned_cols=84 Identities=25% Similarity=0.453 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 79 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSN--------HTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSY 79 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCC--------CCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTT
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence 4579999999999999999999 5666666655 78876654 455555 78999999999998776655
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 80 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 108 (186)
T 2bme_A 80 YRGAAGALLVYDITSRETYNALTNWLTDA 108 (186)
T ss_dssp STTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998776
No 35
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.73 E-value=2.6e-17 Score=106.01 Aligned_cols=83 Identities=20% Similarity=0.392 Sum_probs=67.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+++||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 73 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--------PTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK 73 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCC--------CCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhc
Confidence 468999999999999999999 6677666655 77665543 455554 67999999999998877665
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.++.+++++..|+..+
T Consensus 74 ~~~~~i~v~d~~~~~s~~~~~~~~~~i 100 (167)
T 1kao_A 74 NGQGFILVYSLVNQQSFQDIKPMRDQI 100 (167)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999988776
No 36
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=3.5e-17 Score=108.23 Aligned_cols=99 Identities=22% Similarity=0.390 Sum_probs=75.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 84 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELA--------ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--------CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCC--------CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHH
Confidence 3679999999999999999999 5666666665 88877664 444544 78999999999998887665
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.+++++..|+..+ .......+.+++.+.
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~~p~ilv~ 128 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNEL-ETYCTRNDIVNMLVG 128 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHH-TTCCSCSCCEEEEEE
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHH-HHhcCcCCCcEEEEE
Confidence 999999999999999887 222223445554443
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.6e-17 Score=109.96 Aligned_cols=100 Identities=20% Similarity=0.416 Sum_probs=74.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccc-cccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQ-SLWD 87 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~-~~~~ 87 (125)
..+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++ .++.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 88 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--------ATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQ 88 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--------CCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhH
Confidence 35789999999999999999999 5666666655 78776654 455555 789999999999887 5554
Q ss_pred c------------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 88 K------------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
. |+++..+|+++..|+..+ .......+.+++.+.
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i-~~~~~~~~~piilv~ 134 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEEC-KQHLLANDIPRILVG 134 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHH-HHHCCCSCCCEEEEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHH-HHhcCCCCCCEEEEE
Confidence 4 999999999999999887 222223344444443
No 38
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=4.1e-17 Score=108.42 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=69.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~ 88 (125)
..+.+||+++|++|||||||+++ +.+.+...+. ||.+.++. .+..+ .+.+.+||++|+++++.++..
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 91 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNIS--------PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPM 91 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCC--------CCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHH
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcC--------CCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHH
Confidence 45789999999999999999999 5666665655 88887764 33333 488999999999999887765
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 92 ~~~~~d~iilV~d~~~~~s~~~~~~~~~~i 121 (192)
T 2fg5_A 92 YYRGSAAAVIVYDITKQDSFYTLKKWVKEL 121 (192)
T ss_dssp HHTTCSEEEEEEETTCTHHHHHHHHHHHHH
T ss_pred hhccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.73 E-value=1.2e-17 Score=109.12 Aligned_cols=85 Identities=29% Similarity=0.540 Sum_probs=70.8
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee--EEEEeCC---EEEEEEECCCccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI--GQIDINT---VRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~i~D~~G~~~~~~~~~ 87 (125)
..+.+||+++|++|||||||+++ +.+.+..++. ||++.++ ..+..++ +.+.+||++|+++++.++.
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 74 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--------QTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLD 74 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--------HTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHH
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--------CceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhh
Confidence 35789999999999999999999 5666666665 8887554 3566655 8999999999999988776
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |++++.+|+++..|+.++
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 105 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVV 105 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 6 999999999999998876
No 40
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=110.50 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=69.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEe--CCEEEEEEECCCcccccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDI--NTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~--~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
...+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+.. .++.+.+||++|+++++.++..
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 91 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--------PTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYS 91 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--------CCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGG
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--------CccceEEEEEEEECCEEEEEEEEECCCccchHHHHHH
Confidence 345789999999999999999999 6677776665 88877664 2222 3588999999999999887766
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 121 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HHhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.73 E-value=3.9e-17 Score=106.90 Aligned_cols=85 Identities=22% Similarity=0.357 Sum_probs=69.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
+.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 80 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE--------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC--------CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHH
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCC--------CCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHH
Confidence 45789999999999999999999 6666665555 77776654 444443 78999999999999887765
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQEL 110 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 42
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.73 E-value=4.2e-17 Score=105.49 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=69.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. ||.+.++. .+..++ ..+.+||++|+++++.++..
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 75 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNIN--------PTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMY 75 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhh
Confidence 3579999999999999999999 5666666655 88887664 444444 78999999999998887655
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+++++..|+..+
T Consensus 76 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~l 104 (170)
T 1z0j_A 76 YRGSAAAIIVYDITKEETFSTLKNWVREL 104 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 43
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.73 E-value=3.6e-17 Score=107.58 Aligned_cols=84 Identities=20% Similarity=0.370 Sum_probs=65.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
++++||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 73 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYD--------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 73 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCC--------TTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHH
Confidence 4689999999999999999999 5666666655 66655543 445555 66889999999999888776
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.++.+|+++..|+..+
T Consensus 74 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 101 (189)
T 4dsu_A 74 RTGEGFLCVFAINNTKSFEDIHHYREQI 101 (189)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 44
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.73 E-value=2.3e-17 Score=109.87 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=66.9
Q ss_pred HhhhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccc
Q psy9521 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQS 84 (125)
Q Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~ 84 (125)
++.....+.+||+++|++|||||||+++ +.+.+...+. ||.+..+. .+..++ +.+.+||++|+++ ..
T Consensus 20 ~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~ 90 (196)
T 2atv_A 20 FQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--------PTLESTYRHQATIDDEVVSMEILDTAGQED-TI 90 (196)
T ss_dssp -------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCCCCC-CH
T ss_pred hhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CCCCceEEEEEEECCEEEEEEEEECCCCCc-cc
Confidence 4444556789999999999999999999 6677766666 88887764 355554 7899999999987 44
Q ss_pred cccc------------cccCccCHHHHHHHHhhh
Q psy9521 85 LWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 85 ~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++.. |++++.+|+++..|+..+
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i 124 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 4333 999999999999998876
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.73 E-value=1.6e-17 Score=108.73 Aligned_cols=83 Identities=11% Similarity=0.103 Sum_probs=65.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.|.. +. ||++..+. .+..++ +.+.+||++|++++..+...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~d~ 75 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LE--------KTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSGWADA 75 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CS--------SCSSSEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cC--------CCcceeEEEEEEECCEEEEEEEEECCCCchhHHHHhCCE
Confidence 4689999999999999999999 5666654 54 78876654 455555 78999999999875444333
Q ss_pred -----cccCccCHHHHHHHHhhh
Q psy9521 89 -----DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|++.+
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i 98 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQL 98 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999976554
No 46
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=3.7e-17 Score=108.35 Aligned_cols=97 Identities=23% Similarity=0.446 Sum_probs=75.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ++.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 85 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--------STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 85 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------CCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHH
Confidence 4678999999999999999999 6666666665 77776654 556665 78999999999999887665
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEe
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPV 121 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~ 121 (125)
|+++..+|+++..|+..+ ......+.+++.+
T Consensus 86 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~~~~~~~p~ilv 127 (196)
T 3tkl_A 86 YRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLV 127 (196)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHH--HHHSCTTCEEEEE
T ss_pred HhhCCEEEEEEECcCHHHHHHHHHHHHHH--HHhcCCCCCEEEE
Confidence 999999999999999887 2222334444444
No 47
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2e-17 Score=109.77 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=70.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+..++. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 87 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV--------PTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSY 87 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC--------CSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhc
Confidence 4679999999999999999999 6677766666 88877664 455554 88999999999999887765
Q ss_pred ----------cccCccCHHHHH-HHHhhh
Q psy9521 89 ----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 116 (194)
T 2atx_A 88 PMTDVFLICFSVVNPASFQNVKEEWVPEL 116 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999998 798887
No 48
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=110.00 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=64.0
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+.+||+++|++|||||||+++ +.+.+..++. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 88 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYI--------PTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLC 88 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC----------------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhh
Confidence 35789999999999999999999 6667776666 88877664 455555 67889999999999887776
Q ss_pred -----------cccCccCHHHHH-HHHhhh
Q psy9521 89 -----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 89 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~ 118 (201)
T 2q3h_A 89 YTNTDIFLLCFSVVSPSSFQNVSEKWVPEI 118 (201)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred cCCCcEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999997 698887
No 49
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.72 E-value=2.8e-17 Score=105.89 Aligned_cols=83 Identities=16% Similarity=0.278 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 74 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR 74 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCC--------CCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhh
Confidence 578999999999999999999 5666666655 77776664 445554 68999999999988877665
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.++.+|+++..|+..+
T Consensus 75 ~~d~~i~v~d~~~~~s~~~~~~~~~~i 101 (168)
T 1u8z_A 75 SGEGFLCVFSITEMESFAATADFREQI 101 (168)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998877
No 50
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.72 E-value=6.3e-18 Score=111.88 Aligned_cols=94 Identities=18% Similarity=0.246 Sum_probs=71.3
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCC---CCccccccceeeEEE---Ee--CCEEEEEEECCCcccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMN---PSKITTTVGLNIGQI---DI--NTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~---~~~~~~t~~~~~~~~---~~--~~~~~~i~D~~G~~~~~~ 84 (125)
...+.+||+++|++|||||||++.+.+.+...+.+.. ...+.||++.++... .. ..+.+.+||++|+++++.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 4457899999999999999999768888877653110 112337888776532 22 237899999999999988
Q ss_pred cccc------------ccc------CccCHHHHHHHHhhh
Q psy9521 85 LWDK------------DIR------DCMGVREVKPIFNKN 106 (125)
Q Consensus 85 ~~~~------------Di~------~~~s~~~i~~~l~~~ 106 (125)
++.. |++ +..+|+++..|+.++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~ 129 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY 129 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh
Confidence 8775 887 678888999999876
No 51
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.72 E-value=2.5e-17 Score=110.62 Aligned_cols=88 Identities=20% Similarity=0.322 Sum_probs=67.3
Q ss_pred hhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccc
Q psy9521 11 YMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 11 ~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~ 86 (125)
..+..+.+||+++|++|||||||+++ +.+.+..++. +|.+..+. .+..++ +.+.+||++|++++..++
T Consensus 24 ~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 4gzl_A 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI--------PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 95 (204)
T ss_dssp ------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CC--------CCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTG
T ss_pred HhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcC--------CeecceeEEEEEECCEEEEEEEEECCCchhhHHHH
Confidence 34456889999999999999999999 6677776666 77766654 344444 778899999999998887
Q ss_pred cc------------cccCccCHHHHH-HHHhhh
Q psy9521 87 DK------------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~-~~l~~~ 106 (125)
.. |++++.+|+++. .|+..+
T Consensus 96 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 128 (204)
T 4gzl_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128 (204)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 75 999999999998 788887
No 52
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=5.2e-17 Score=106.18 Aligned_cols=86 Identities=23% Similarity=0.461 Sum_probs=62.7
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-Hhhccc-cccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFT-KNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~-~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~ 86 (125)
+..+.+||+++|++|||||||+++ +.+.+. ..+. ||++.++. .+..++ +.+.+||++|+++++.++
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~ 77 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFI--------STVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVT 77 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCC--------CCCSCEEEEEEEEETTEEEEEEEEECCCC-------
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcC--------CceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 346789999999999999999999 555553 2333 88887765 334555 689999999999988776
Q ss_pred cc------------cccCccCHHHHHHHHhhh
Q psy9521 87 DK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.. |++++.+++++..|+..+
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 109 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEI 109 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 55 999999999999999876
No 53
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=1.1e-17 Score=111.73 Aligned_cols=88 Identities=18% Similarity=0.385 Sum_probs=61.4
Q ss_pred hhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCccccccc
Q psy9521 11 YMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSL 85 (125)
Q Consensus 11 ~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~ 85 (125)
....++.+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|+++++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 93 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENIS--------ATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC------------------CEEEEEEETTEEEEEEEEECTTCTTCHHH
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCC--------CCccceeEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 34456789999999999999999999 5666666555 78776653 455554 78999999999998877
Q ss_pred ccc------------cccCccCHHHHHHHHhhh
Q psy9521 86 WDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 86 ~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+.. |+++..+|+++..|++.+
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i 126 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMI 126 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHH
Confidence 655 999999999999998876
No 54
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.72 E-value=2.6e-17 Score=109.17 Aligned_cols=84 Identities=23% Similarity=0.429 Sum_probs=66.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 90 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--------LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH
Confidence 5689999999999999999999 5666665555 77776553 455555 78999999999999887765
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i 119 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDA 119 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 55
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.72 E-value=5.3e-17 Score=108.74 Aligned_cols=84 Identities=24% Similarity=0.498 Sum_probs=69.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 77 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYI--------STIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSY 77 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCC--------CSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHh
Confidence 4578999999999999999999 5666666655 78876664 455555 68999999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 78 ~~~~d~vilv~d~~~~~s~~~~~~~~~~i 106 (206)
T 2bcg_Y 78 YRGSHGIIIVYDVTDQESFNGVKMWLQEI 106 (206)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 56
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.72 E-value=4e-17 Score=106.42 Aligned_cols=85 Identities=22% Similarity=0.427 Sum_probs=69.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
..+.+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 83 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP--------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRS 83 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT--------TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHH
Confidence 45689999999999999999999 5666666555 77776653 444544 78999999999998877665
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|.++..+++++..|+..+
T Consensus 84 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 113 (179)
T 1z0f_A 84 YYRGAAGALMVYDITRRSTYNHLSSWLTDA 113 (179)
T ss_dssp HHHTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhccCCEEEEEEeCcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 57
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.72 E-value=9.1e-18 Score=110.99 Aligned_cols=82 Identities=27% Similarity=0.401 Sum_probs=59.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh---ccccccCCCCCCccccccceeeEEEEe-------CCEEEEEEECCCcccccccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT---KFTKNYKGMNPSKITTTVGLNIGQIDI-------NTVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~---~~~~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~i~D~~G~~~~~~~~ 86 (125)
++||+++|++|||||||++++.+ .+..++. ||++.++..... ..+.+.+||++|+++|+.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~--------~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQS--------ATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH 73 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcc--------eeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh
Confidence 57999999999999999999654 3444454 899888764332 35789999999999988876
Q ss_pred cc------------cccCc-cCHHHHHHHHhhh
Q psy9521 87 DK------------DIRDC-MGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~-~s~~~i~~~l~~~ 106 (125)
+. |++++ .+|+++..|+..+
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~ 106 (184)
T 2zej_A 74 PHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNI 106 (184)
T ss_dssp HHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHH
T ss_pred HHHccCCcEEEEEEeCCcchhHHHHHHHHHHHH
Confidence 65 88887 5899999999876
No 58
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.72 E-value=3.7e-17 Score=105.60 Aligned_cols=84 Identities=29% Similarity=0.493 Sum_probs=68.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 74 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--------KTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAY 74 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--------CCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHH
Confidence 4679999999999999999999 5666666655 88776654 444444 78999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+++++..|+..+
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 103 (168)
T 1z2a_A 75 YRGAQACVLVFSTTDRESFEAISSWREKV 103 (168)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 59
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=4.6e-17 Score=106.11 Aligned_cols=84 Identities=25% Similarity=0.491 Sum_probs=69.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
-+++||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|++++...+..
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 83 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--------ATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSY 83 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHH
Confidence 3679999999999999999999 5666666655 88876654 455555 78999999999998887766
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 84 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 112 (179)
T 2y8e_A 84 IRDSTVAVVVYDITNTNSFHQTSKWIDDV 112 (179)
T ss_dssp HHTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 60
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.72 E-value=3.3e-17 Score=105.98 Aligned_cols=83 Identities=29% Similarity=0.538 Sum_probs=63.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~ 73 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--------TTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 73 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC---------------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHH
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHh
Confidence 468999999999999999999 5666655555 77776654 455554 78999999999998887665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+++++..|+..+
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i 101 (170)
T 1g16_A 74 RGAMGIILVYDITDERTFTNIKQWFKTV 101 (170)
T ss_dssp TTEEEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 61
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3.6e-17 Score=111.16 Aligned_cols=84 Identities=20% Similarity=0.440 Sum_probs=65.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 82 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--------STIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAY 82 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC--------------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGG
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHH
Confidence 4678999999999999999999 5666666655 78776654 455665 78999999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 83 ~~~~d~vilV~D~~~~~s~~~~~~~l~~i 111 (223)
T 3cpj_B 83 YRGAVGALIVYDISKSSSYENCNHWLSEL 111 (223)
T ss_dssp TTTCCEEEEEEC-CCHHHHHHHHHHHHHH
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 62
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.71 E-value=6.9e-17 Score=107.11 Aligned_cols=84 Identities=20% Similarity=0.413 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+... ++.+.+||++|+++++.++..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 94 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--------TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAY 94 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--------CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHH
Confidence 4679999999999999999999 5666665555 88887764 34443 378999999999998887665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 95 ~~~~d~vi~v~D~~~~~s~~~~~~~l~~i 123 (193)
T 2oil_A 95 YRGAVGALLVFDLTKHQTYAVVERWLKEL 123 (193)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 63
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.71 E-value=3.3e-17 Score=105.87 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=50.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-----
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~----- 88 (125)
.+||+++|++|||||||++++.+....... ++.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 73 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA--------EAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMG 73 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC------------------CEEEEEEEETTEEEEEEEEECC---------------C
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC--------CccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhC
Confidence 578999999999999999996544433333 55555543 344444 78999999999998887765
Q ss_pred -------cccCccCHHHHHHHHhhh
Q psy9521 89 -------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 74 ~~~i~v~d~~~~~s~~~~~~~~~~~ 98 (166)
T 3q72_A 74 DAYVIVYSVTDKGSFEKASELRVQL 98 (166)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 64
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.71 E-value=1e-16 Score=106.05 Aligned_cols=84 Identities=25% Similarity=0.444 Sum_probs=69.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC--CEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+..+ ++.+.+||++|+++++.++..
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 91 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFV--------STVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAY 91 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------CCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGG
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcC--------CceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHh
Confidence 4578999999999999999999 5666666555 77776654 34444 378999999999999887765
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+.++
T Consensus 92 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 120 (189)
T 2gf9_A 92 YRGAMGFLLMYDIANQESFAAVQDWATQI 120 (189)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 65
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.71 E-value=6.7e-17 Score=107.83 Aligned_cols=85 Identities=15% Similarity=0.262 Sum_probs=70.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 82 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNY 82 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--------TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCC--------CccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHH
Confidence 34679999999999999999999 5666666665 77776653 455555 68999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+.+..|+..+
T Consensus 83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i 111 (206)
T 2bov_A 83 FRSGEGFLCVFSITEMESFAATADFREQI 111 (206)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998887
No 66
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.71 E-value=5.1e-17 Score=106.61 Aligned_cols=83 Identities=23% Similarity=0.350 Sum_probs=68.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+.+||+++|++|||||||+++ +.+.+..++. +|.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 75 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI--------PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP 75 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCC--------CCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcC--------CcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhcc
Confidence 578999999999999999999 5677776665 77776654 444554 77889999999999887765
Q ss_pred ---------cccCccCHHHHH-HHHhhh
Q psy9521 89 ---------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 103 (186)
T 1mh1_A 76 QTDVSLICFSLVSPASFENVRAKWYPEV 103 (186)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred CCcEEEEEEECCChhhHHHHHHHHHHHH
Confidence 999999999998 688877
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=4.3e-17 Score=106.30 Aligned_cols=84 Identities=21% Similarity=0.436 Sum_probs=67.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. ||.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 76 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--------HTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPF 76 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC------------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGG
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHH
Confidence 4678999999999999999999 5666666655 88887764 455555 78999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+++++..|+..+
T Consensus 77 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 105 (177)
T 1wms_A 77 YRGSDCCLLTFSVDDSQSFQNLSNWKKEF 105 (177)
T ss_dssp GTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=110.35 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=54.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+.+||+++|++|||||||+++ +.+.+...+. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 102 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYT--------PTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLF 102 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------C--------CCCCEEEEEEEEETTEEEEEEEEEC-------------
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHH
Confidence 35689999999999999999999 5666766665 77776654 445554 68999999999999887765
Q ss_pred -----------cccCccCHHHHH-HHHhhh
Q psy9521 89 -----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 132 (214)
T 2j1l_A 103 YPDASVLLLCFDVTSPNSFDNIFNRWYPEV 132 (214)
T ss_dssp --CEEEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 999999999997 698887
No 69
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.71 E-value=6.5e-17 Score=106.09 Aligned_cols=84 Identities=15% Similarity=0.266 Sum_probs=68.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|+++++.++..
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 87 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYE--------PTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYF 87 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------TTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCC--------CccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHh
Confidence 4679999999999999999999 5666666665 77776664 455555 68999999999998877665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..+|+++..|+..+
T Consensus 88 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i 115 (187)
T 2a9k_A 88 RSGEGFLCVFSITEMESFAATADFREQI 115 (187)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998887
No 70
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=108.62 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=64.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 95 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACK--------STVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 95 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCC--------CccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHH
Confidence 4689999999999999999999 5566665555 78876654 455555 78999999999998877655
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|++.+
T Consensus 96 ~~~~d~iilV~D~~~~~s~~~~~~~~~~i 124 (192)
T 2il1_A 96 YRSAKGIILVYDITKKETFDDLPKWMKMI 124 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998776
No 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=109.94 Aligned_cols=84 Identities=24% Similarity=0.463 Sum_probs=61.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 94 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--------HTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSY 94 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC--------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHH
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCC--------CcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHH
Confidence 4679999999999999999999 5666666655 77776653 455565 78999999999988877665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 95 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 123 (200)
T 2o52_A 95 YRGAAGALLVYDITSRETYNSLAAWLTDA 123 (200)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 72
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=7.2e-17 Score=108.31 Aligned_cols=84 Identities=27% Similarity=0.534 Sum_probs=68.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 89 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFI--------TTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAY 89 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSS--------CCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHH
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccC--------CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHH
Confidence 4678999999999999999999 5566665555 77776654 556666 78999999999999887665
Q ss_pred -----------cccCccCHHHHHHHHhhh
Q psy9521 89 -----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 90 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i 118 (213)
T 3cph_A 90 YRGAMGIILVYDVTDERTFTNIKQWFKTV 118 (213)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 73
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.70 E-value=9.9e-17 Score=107.10 Aligned_cols=83 Identities=28% Similarity=0.455 Sum_probs=68.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 78 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFV--------STVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYY 78 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCC--------CCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------CccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhh
Confidence 468999999999999999999 5666666655 88887664 444443 78999999999998876655
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 79 ~~~d~ii~v~d~~~~~s~~~~~~~~~~i 106 (203)
T 1zbd_A 79 RGAMGFILMYDITNEESFNAVQDWSTQI 106 (203)
T ss_dssp GGCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 74
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.70 E-value=5.2e-17 Score=107.05 Aligned_cols=84 Identities=25% Similarity=0.375 Sum_probs=68.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE---EEEeC-----------CEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG---QIDIN-----------TVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~---~~~~~-----------~~~~~i~D~~G~ 79 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..+ .+.+.+||++|+
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~ 80 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--------TTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL 80 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--------CCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--------cccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc
Confidence 4679999999999999999999 5566666655 88887765 33433 368999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++++.++.. |++++.+++++..|+..+
T Consensus 81 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 119 (195)
T 3bc1_A 81 ERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQL 119 (195)
T ss_dssp GGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 998776555 999999999999999887
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.70 E-value=1.1e-17 Score=109.66 Aligned_cols=85 Identities=25% Similarity=0.311 Sum_probs=57.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+.+||+++|++|||||||+++ +.+.+..++. ||++..+. .+..+ .+.+.+||++|+++++.++..
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 76 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYV--------PTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLS 76 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC------------------CBCCCC-------CEEECCCC-CTTTTTGGGG
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhh
Confidence 35689999999999999999999 6666766665 77765543 22223 477889999999999887765
Q ss_pred -----------cccCccCHHHHH-HHHhhh
Q psy9521 89 -----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 77 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 106 (182)
T 3bwd_D 77 YRGADVFILAFSLISKASYENVSKKWIPEL 106 (182)
T ss_dssp GTTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999998 698887
No 76
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.70 E-value=8.3e-17 Score=115.77 Aligned_cols=85 Identities=31% Similarity=0.582 Sum_probs=65.8
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+.++.+||+++|++|||||||+++ +.+.+... . ||++..+..+..+++.+.+|||+|+++++.++..
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~--------pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 231 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-I--------PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 231 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-E--------EETTEEEEEEEETTEEEEEEECC-----CCSHHHHHT
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-c--------cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhc
Confidence 446788999999999999999999 45555433 2 8999988888888999999999999999888665
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 232 ~ad~vilV~D~~~~~s~~~~~~~~~~~ 258 (329)
T 3o47_A 232 NTQGLIFVVDSNDRERVNEAREELMRM 258 (329)
T ss_dssp TEEEEEEEEETTCSSSHHHHHHHHHHH
T ss_pred cCCEEEEEEECCchHHHHHHHHHHHHH
Confidence 999999999998776654
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.70 E-value=9.9e-17 Score=106.30 Aligned_cols=85 Identities=25% Similarity=0.475 Sum_probs=69.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC----------------------
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT---------------------- 68 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~---------------------- 68 (125)
+++.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--------TTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDN 75 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--------CCCSCEEEEEEEETTC----------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--------ccccceeEEEEEEecCcccccccccccccccccccccc
Confidence 35689999999999999999999 6666666665 88876654 344433
Q ss_pred -----------------EEEEEEECCCcccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 69 -----------------VRLNFWDLGGQLELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 69 -----------------~~~~i~D~~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
..+.+||++|++++..++.. |..++.+++++..|+..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i 142 (208)
T 3clv_A 76 NVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQL 142 (208)
T ss_dssp ---------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 78999999999998887655 999999999999998876
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.70 E-value=4.7e-17 Score=110.27 Aligned_cols=85 Identities=25% Similarity=0.496 Sum_probs=72.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEE--EEeC--CEEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQ--IDIN--TVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~i~D~~G~~~~~~~~~~ 88 (125)
....+||+++|++|||||||+++ +.+.+...+. +|.+.++.. +..+ ++.+.+||++|++++..++..
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYV--------ATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEE--------TTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence 35789999999999999999999 8888887776 888877653 3333 388999999999999887765
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 113 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDL 113 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999887
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1e-16 Score=107.66 Aligned_cols=85 Identities=22% Similarity=0.308 Sum_probs=64.8
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
..+++||+++|++|||||||+++ +.+.+...+. ||.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 93 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYV--------PTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLS 93 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC---------------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGG
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCC--------CcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhh
Confidence 35689999999999999999999 5666666665 78877664 455555 78999999999999877665
Q ss_pred -----------cccCccCHHHH-HHHHhhh
Q psy9521 89 -----------DIRDCMGVREV-KPIFNKN 106 (125)
Q Consensus 89 -----------Di~~~~s~~~i-~~~l~~~ 106 (125)
|++++.+|+++ ..|+..+
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 123 (207)
T 2fv8_A 94 YPDTDVILMCFSVDSPDSLENIPEKWVPEV 123 (207)
T ss_dssp CTTCCEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999 5788877
No 80
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.70 E-value=1.6e-16 Score=102.02 Aligned_cols=83 Identities=18% Similarity=0.326 Sum_probs=66.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+++||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~ 73 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECD--------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR 73 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccC--------CccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhc
Confidence 368999999999999999999 5666655555 67665553 444444 67899999999998877665
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..+++++..|+.++
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i 100 (166)
T 2ce2_X 74 TGEGFLCVFAINNTKSFEDIHQYREQI 100 (166)
T ss_dssp HCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999998876
No 81
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.69 E-value=1e-16 Score=107.28 Aligned_cols=84 Identities=25% Similarity=0.311 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
...+||+++|++|||||||+++ ..+.+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 94 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSY 94 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--------CSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--------CcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhc
Confidence 4679999999999999999999 5666666665 77777663 455555 68999999999999887776
Q ss_pred ----------cccCccCHHHH-HHHHhhh
Q psy9521 89 ----------DIRDCMGVREV-KPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i-~~~l~~~ 106 (125)
|++++.+|+++ ..|+..+
T Consensus 95 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 123 (201)
T 2gco_A 95 PDTDVILMCFSIDSPDSLENIPEKWTPEV 123 (201)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999 5788877
No 82
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.5e-17 Score=110.36 Aligned_cols=98 Identities=26% Similarity=0.408 Sum_probs=74.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEe--CCEEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDI--NTVRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. +|.+.++. .+.. .++.+.+||++|+++++.++..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 92 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFV--------STVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAY 92 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEE--------EEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccC--------CCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHH
Confidence 3678999999999999999999 6666666665 77776654 3333 3589999999999998877665
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|++++.+|+++..|+..+ ......+.+++.+.
T Consensus 93 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~~~~~~~piilv~ 135 (191)
T 3dz8_A 93 YRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVG 135 (191)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHH--HHHSCTTCEEEEEE
T ss_pred HccCCEEEEEEECcCHHHHHHHHHHHHHH--HHhcCCCCCEEEEE
Confidence 999999999999999987 22222344554443
No 83
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.69 E-value=2.2e-16 Score=104.34 Aligned_cols=84 Identities=19% Similarity=0.341 Sum_probs=59.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
-+.+||+++|++|||||||+++ +.+.+...+. +|.+..+. .+..++ +.+.+||++|++++..++..
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 90 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYD--------PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 90 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCC--------TTCCEEEEEEEEETTEEEEEEEEECCC-----------C
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccC--------CccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhh
Confidence 3679999999999999999999 5566655555 66666553 455554 67999999999988777665
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..+++++..|+..+
T Consensus 91 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i 118 (190)
T 3con_A 91 RTGEGFLCVFAINNSKSFADINLYREQI 118 (190)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred CcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 899999999999998876
No 84
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=3e-16 Score=117.97 Aligned_cols=84 Identities=33% Similarity=0.579 Sum_probs=71.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
..+.+||+++|.+|||||||++++ .+.+. .+. ||++.++..++.+++.+.+|||+|+++++.++..
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~--------~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 389 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTI--------PTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTG 389 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCC--------CCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTT
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcC--------CccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhcc
Confidence 356899999999999999999995 44433 333 8999999888888999999999999999988775
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 390 ad~~i~V~D~~~~~s~~~~~~~~~~~ 415 (497)
T 3lvq_E 390 TQGLIFVVDCADRDRIDEARQELHRI 415 (497)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHH
T ss_pred CCEEEEEEECcchhHHHHHHHHHHHH
Confidence 999999999999877665
No 85
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.68 E-value=7.4e-17 Score=105.40 Aligned_cols=85 Identities=26% Similarity=0.504 Sum_probs=57.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC---CEEEEEEECCCccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN---TVRLNFWDLGGQLELQSLWD 87 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~D~~G~~~~~~~~~ 87 (125)
.++.+||+++|++|||||||+++ +.+.+...+. ||++.++. .+..+ .+.+.+||++|+++++.++.
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 76 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--------ATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGV 76 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----------CCCSCEEEEECCSSSCCEEEEEECCC----------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--------CccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhH
Confidence 35789999999999999999999 5666666655 77776553 44444 37899999999999888766
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |+++..+|+++..|+.++
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 107 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEF 107 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHH
Confidence 5 999999999999998876
No 86
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.68 E-value=5e-17 Score=109.68 Aligned_cols=84 Identities=30% Similarity=0.464 Sum_probs=68.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeC------------CEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDIN------------TVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~i~D~~G~ 79 (125)
.+.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..+ .+.+.+||++|+
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~ 94 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFI--------TTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQ 94 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEE--------EEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCC--------CceeEEEEEEEEEECCccccccccCceeEEEEEEECCCc
Confidence 4679999999999999999999 5566655555 88887764 33333 478999999999
Q ss_pred ccccccccc------------cccCccCHHHHHHHHhhh
Q psy9521 80 LELQSLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
++++.++.. |+++..+|+++..|+..+
T Consensus 95 ~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i 133 (217)
T 2f7s_A 95 ERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQL 133 (217)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTC
T ss_pred HhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 998776655 999999999999999987
No 87
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.8e-16 Score=102.58 Aligned_cols=83 Identities=22% Similarity=0.380 Sum_probs=66.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc---
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+.+||+++|++|||||||+++ +.+.+...+. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~ 73 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYI--------PTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSIS 73 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCC--------CCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--------CCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcc
Confidence 578999999999999999999 5566665555 77776664 333343 78999999999988876655
Q ss_pred ---------cccCccCHHHHHHHHhhh
Q psy9521 89 ---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ---------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+++++..|+..+
T Consensus 74 ~~~~~i~v~d~~~~~~~~~~~~~~~~i 100 (172)
T 2erx_A 74 KGHAFILVYSITSRQSLEELKPIYEQI 100 (172)
T ss_dssp HCSEEEEEEETTCHHHHHTTHHHHHHH
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999998887765
No 88
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.68 E-value=2.9e-16 Score=104.89 Aligned_cols=85 Identities=27% Similarity=0.454 Sum_probs=68.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
.++.+||+++|++|||||||+++ +.+.+...+. +|++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 76 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYK--------ATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVA 76 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--------CCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCG
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCC--------CcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHH
Confidence 35789999999999999999999 5666666665 88877764 444444 78999999999998887665
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+|+++..|+..+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 106 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEF 106 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999888865
No 89
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.67 E-value=3.1e-17 Score=109.54 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=45.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-Hhh--ccccccCCCCCCccccccceee--EEEEeC----CEEEEEEECCCccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKT--KFTKNYKGMNPSKITTTVGLNI--GQIDIN----TVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~--~~~~~~~~~~~~~~~~t~~~~~--~~~~~~----~~~~~i~D~~G~~~~~~~ 85 (125)
.+.+||+++|++|||||||+++ +.+ .+..++. +|++.++ ..+..+ .+.+.+||++|+++++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 89 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYA--------MTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQ 89 (208)
T ss_dssp EEEEEEEEC------------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCC--------CccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHH
Confidence 4679999999999999999999 555 5666665 8887554 355555 478999999999988776
Q ss_pred ccc------------cccCccCHHHHHHHHhhh
Q psy9521 86 WDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 86 ~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
+.. |++++.+|+++..|+..+
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 122 (208)
T 2yc2_C 90 ISQYWNGVYYAILVFDVSSMESFESCKAWFELL 122 (208)
T ss_dssp HSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHH
Confidence 655 999999999999999887
No 90
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.67 E-value=3.3e-17 Score=109.40 Aligned_cols=98 Identities=22% Similarity=0.443 Sum_probs=73.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ++.+.++. .+..++ +.+.+||++|+++++.++..
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 102 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI--------STIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSY 102 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHH--------HHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcC--------CcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHH
Confidence 4579999999999999999999 5555555544 77765553 555665 78999999999999887766
Q ss_pred -----------cccCccCHHHHHHHHhhhcccccCCCCeEEEEee
Q psy9521 89 -----------DIRDCMGVREVKPIFNKNSAHLIGRRDCMVMPVS 122 (125)
Q Consensus 89 -----------Di~~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~s 122 (125)
|+++..+|+++..|+..+ ........+++.+.
T Consensus 103 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i--~~~~~~~~p~ilv~ 145 (199)
T 3l0i_B 103 YRGAHGIIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVG 145 (199)
T ss_dssp -CCCSEEEECC-CCCSHHHHHHHHHHHHH--HSCC-CCSEEEEC-
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHH--HHhccCCCCEEEEE
Confidence 999999999999999887 22223345555543
No 91
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.66 E-value=2.2e-16 Score=105.43 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=61.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCcccccccee--eEEEEeCC--EEEEEEECCCcccccc-cccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLN--IGQIDINT--VRLNFWDLGGQLELQS-LWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~D~~G~~~~~~-~~~~ 88 (125)
...+||+++|++|||||||++++. ..+...+. |+.+.+ ...+..++ +.+.+||++|++++.. ++..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~ 92 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--------PENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDH 92 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--------TTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--------CCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHH
Confidence 467999999999999999999964 33322222 333332 23455554 7889999999988765 4433
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.||+++..|+.++
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i 122 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFSKVPETLLRL 122 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hhccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999876
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.66 E-value=1.1e-16 Score=107.97 Aligned_cols=84 Identities=25% Similarity=0.457 Sum_probs=68.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEe--C-C--EEEEEEECCCcccccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDI--N-T--VRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~-~--~~~~i~D~~G~~~~~~~~~~ 88 (125)
...+||+++|++|||||||+++ +.+.+...+. +|.+........ . + +.+.+||++|++++..++..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 80 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYN--------ATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDV 80 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEE--------TTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHH
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHH
Confidence 4689999999999999999999 5566665555 888777653322 2 2 78999999999999877765
Q ss_pred ------------cccCccCHHHHHHHHhhh
Q psy9521 89 ------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~~~s~~~i~~~l~~~ 106 (125)
|+++..+++++..|+..+
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 110 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEF 110 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 999999999999998887
No 93
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.66 E-value=3.3e-16 Score=101.83 Aligned_cols=83 Identities=13% Similarity=0.072 Sum_probs=55.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceee--EEEEeCC--EEEEEEECCCccc--cccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFWDLGGQLE--LQSLWD 87 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~--~~~~~~ 87 (125)
.+.+||+++|++|||||||++++ .+.+...+ ++.+.++ ..+..++ +.+.+||++|++. +..++.
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 72 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLH---------EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQE 72 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----C---------CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHH
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCcccc---------CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHH
Confidence 35789999999999999999995 44444332 4444443 3455555 6899999999987 333332
Q ss_pred c------------cccCccCHHHHHHHHhhh
Q psy9521 88 K------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 88 ~------------Di~~~~s~~~i~~~l~~~ 106 (125)
. |++++.+|+++..|+..+
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l 103 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSFESASELRIQL 103 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred hhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 2 999999999999998876
No 94
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=3.6e-16 Score=103.78 Aligned_cols=84 Identities=18% Similarity=0.345 Sum_probs=67.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
...+||+++|++|||||||+++ +.+.+...+. ||++..+. .+..++ +.+.+||++|+++++.++..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 77 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYI--------PTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSI 77 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTS--------CCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCccc--------CccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhh
Confidence 5679999999999999999999 5666666555 77776664 333443 78999999999998877655
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 78 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i 105 (199)
T 2gf0_A 78 SKGHAFILVFSVTSKQSLEELGPIYKLI 105 (199)
T ss_dssp HHCSEEEEEEETTCHHHHHTTHHHHHHH
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 999999999998887655
No 95
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.65 E-value=1.8e-16 Score=113.89 Aligned_cols=96 Identities=14% Similarity=0.205 Sum_probs=63.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc-cc--cc-------
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS-LW--DK------- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~--~~------- 88 (125)
||+++|++|||||||++++.+++.+... ..+.||+|+++..+. ..+++++|||+|||+|+. .| +.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~----~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDT----LYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGG----TTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCcc----ceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 6999999999999999986555543211 123499999887653 348999999999999974 22 22
Q ss_pred -----cccCccCHHHHHHH---HhhhcccccCCCCeEEEEeec
Q psy9521 89 -----DIRDCMGVREVKPI---FNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 89 -----Di~~~~s~~~i~~~---l~~~~~~~~~~~~~~i~~~sA 123 (125)
|++++ .++.+..| +..+ .....+++++.+..
T Consensus 76 ~IlV~Ditd~-~~~~~~~l~~~l~~~---~~~~~~ipillvgN 114 (331)
T 3r7w_B 76 LVYVIDSQDE-YINAITNLAMIIEYA---YKVNPSINIEVLIH 114 (331)
T ss_dssp EEEECCCSSC-TTHHHHHHHHHHHHH---HHHCTTCEEEEECC
T ss_pred EEEEEECCch-HHHHHHHHHHHHHHH---hhcCCCCcEEEEEE
Confidence 98887 44433333 4433 11234566665543
No 96
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.64 E-value=5.5e-16 Score=100.31 Aligned_cols=84 Identities=18% Similarity=0.198 Sum_probs=53.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCC--EEEEEEECCCcccccc-cccc----
Q psy9521 17 EFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINT--VRLNFWDLGGQLELQS-LWDK---- 88 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~D~~G~~~~~~-~~~~---- 88 (125)
.+||+++|++|||||||++++. ..+...+. ..++.......+..++ +.+.+||++|++++.. ++..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~ 75 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHE------MENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQT 75 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCccccc------CCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhcc
Confidence 4789999999999999999954 44333322 1122233333455555 7899999999998876 4443
Q ss_pred --------cccCccCHHHHHHHHhhh
Q psy9521 89 --------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 --------Di~~~~s~~~i~~~l~~~ 106 (125)
|++++.+|+++..|+..+
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~ 101 (169)
T 3q85_A 76 GDAFLIVFSVTDRRSFSKVPETLLRL 101 (169)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHH
Confidence 999999999999999887
No 97
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.64 E-value=1e-15 Score=109.15 Aligned_cols=84 Identities=18% Similarity=0.349 Sum_probs=65.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhh--ccccccCCCCCCccccccceeeEEEEe-CCEEEEEEECCCcccc-----cccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKT--KFTKNYKGMNPSKITTTVGLNIGQIDI-NTVRLNFWDLGGQLEL-----QSLW 86 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~--~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----~~~~ 86 (125)
..+||+++|++|||||||+++ +.+ .+... .+.+|++.++..+.. +++.+.+||++|++++ ..++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~-------~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 74 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTR-------RLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQK 74 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGG-------GCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccc-------CcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHH
Confidence 468999999999999999999 444 22221 223899998887766 4699999999999988 4544
Q ss_pred cc------------cccCccCHHHHHHHHhhh
Q psy9521 87 DK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.. |+++..+|+++..|...+
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l 106 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKAL 106 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHH
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHH
Confidence 43 999999999998775443
No 98
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.64 E-value=1.4e-15 Score=101.50 Aligned_cols=83 Identities=22% Similarity=0.454 Sum_probs=64.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+|++++|+.|||||||+++ +...+...+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--------~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 75 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--------STIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYY 75 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHH
Confidence 468999999999999999999 5556665555 88776653 566666 67889999999998876654
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..+|+++..|+..+
T Consensus 76 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 103 (199)
T 2f9l_A 76 RGAVGALLVYDIAKHLTYENVERWLKEL 103 (199)
T ss_dssp TTCSEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 888888999998898765
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.64 E-value=2.1e-15 Score=100.33 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=66.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
..+|++++|++|||||||+++ ....++..+. ||++.++. .+..++ +.+.+||++|+++++.++..
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~--------~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 99 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESK--------STIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCC--------CCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--------CccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence 468999999999999999999 5556665665 88887764 566666 56778999999988877654
Q ss_pred ----------cccCccCHHHHHHHHhhh
Q psy9521 89 ----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~~~l~~~ 106 (125)
|+.+..+|+++..|+..+
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~ 127 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKEL 127 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHH
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 888888899998888765
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.64 E-value=3.9e-16 Score=104.02 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=64.3
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE----EEE---eCCEEEEEEECCCccccccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG----QID---INTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~----~~~---~~~~~~~i~D~~G~~~~~~~ 85 (125)
..++.+||+++|++|||||||++++.+++... +|.+.++. ... ...+.+.+||++|+++|...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 85 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPN----------ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 85 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGG----------GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCc----------ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh
Confidence 34678999999999999999999977666544 23332221 222 23489999999999998665
Q ss_pred c---cc------------cccCc--cCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 86 W---DK------------DIRDC--MGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 86 ~---~~------------Di~~~--~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
. .. |+++. .+++.+..|+..+ .....+.+++.+..
T Consensus 86 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~---~~~~~~~piilv~n 137 (196)
T 3llu_A 86 TFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKA---YKVNPDMNFEVFIH 137 (196)
T ss_dssp TCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHH---HHHCTTCEEEEEEE
T ss_pred hhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHH---HhcCCCCcEEEEEe
Confidence 4 23 88887 6666777777765 22234556665543
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.43 E-value=2e-17 Score=110.73 Aligned_cols=88 Identities=22% Similarity=0.343 Sum_probs=70.1
Q ss_pred hhccCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeC--CEEEEEEECCCcccccccc
Q psy9521 11 YMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDIN--TVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 11 ~~~~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~ 86 (125)
.++.++.+||+++|++|||||||+++ +.+.+..++. +|.+..+. .+..+ .+.+.+||++|++++..++
T Consensus 24 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 95 (204)
T 3th5_A 24 LYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI--------PTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLR 95 (204)
Confidence 34567899999999999999999999 6677766665 67665543 23333 4778899999999988777
Q ss_pred cc------------cccCccCHHHHH-HHHhhh
Q psy9521 87 DK------------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~-~~l~~~ 106 (125)
.. |++++.+|+++. .|+..+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l 128 (204)
T 3th5_A 96 PLSYPQTDVFLICFSLVSPASFENVRAKWYPEV 128 (204)
Confidence 65 999999999997 788877
No 102
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.62 E-value=2.9e-15 Score=97.63 Aligned_cols=67 Identities=22% Similarity=0.336 Sum_probs=51.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCcccccccee--eEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLN--IGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
.++.++|+++|++|||||||+++ +.+.+...+. +++..+ ...+..++..+.+||++|+++++.++..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 74 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEA--------GGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRAR 74 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSC--------CSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCC--------CceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHH
Confidence 35788999999999999999999 5566655443 333322 3356778889999999999998877654
No 103
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.61 E-value=3.6e-15 Score=99.32 Aligned_cols=83 Identities=13% Similarity=0.185 Sum_probs=57.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh---ccccccCCCCCCccccccceee--EEEEeCC--EEEEEEECCCccc-ccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT---KFTKNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFWDLGGQLE-LQSLW 86 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~---~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~-~~~~~ 86 (125)
...+||+++|++|||||||++++.+ .+...+ ++++.++ ..+..++ +.+.+||++|++. ++.++
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~ 74 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX---------EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH 74 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-------------GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTG
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc---------cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHH
Confidence 4679999999999999999999542 223332 3344443 3455665 6778999999876 44444
Q ss_pred cc------------cccCccCHHHHHHHHhhh
Q psy9521 87 DK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.. |++++.||+++..|+..+
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l 106 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQL 106 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 33 999999999999988765
No 104
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.60 E-value=4.4e-15 Score=105.61 Aligned_cols=84 Identities=23% Similarity=0.336 Sum_probs=69.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE-EEEeCC--EEEEEEECCCcccccccccc--
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG-QIDINT--VRLNFWDLGGQLELQSLWDK-- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~D~~G~~~~~~~~~~-- 88 (125)
+..+||+++|++|||||||+++ +.+.+..++. +|++..+. .+..++ +.+.+||++|++++..++..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~--------~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 224 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYI--------PTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 224 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCC--------CCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccC--------CcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhc
Confidence 4679999999999999999999 6677776666 78876664 455555 66779999999999877765
Q ss_pred ----------cccCccCHHHHH-HHHhhh
Q psy9521 89 ----------DIRDCMGVREVK-PIFNKN 106 (125)
Q Consensus 89 ----------Di~~~~s~~~i~-~~l~~~ 106 (125)
|++++.+|+++. .|+..+
T Consensus 225 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~ 253 (332)
T 2wkq_A 225 PQTDVFLICFSLVSPASFHHVRAKWYPEV 253 (332)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHH
T ss_pred cCCCEEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999998 688877
No 105
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.59 E-value=3.3e-15 Score=101.37 Aligned_cols=83 Identities=13% Similarity=0.192 Sum_probs=58.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh---ccccccCCCCCCccccccceee--EEEEeCC--EEEEEEECCCccc-ccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT---KFTKNYKGMNPSKITTTVGLNI--GQIDINT--VRLNFWDLGGQLE-LQSLW 86 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~---~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~D~~G~~~-~~~~~ 86 (125)
...+||+++|++|||||||++++.+ .|...+ ++++.++ ..+..++ +.+.+||++|++. ++.++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~---------~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~ 105 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC---------EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLH 105 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC------------CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC---------CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHH
Confidence 4679999999999999999999542 223332 3344443 3455565 6788999999886 33332
Q ss_pred cc------------cccCccCHHHHHHHHhhh
Q psy9521 87 DK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
.. |++++.||+++..|+.++
T Consensus 106 ~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l 137 (211)
T 2g3y_A 106 DHCMQVGDAYLIVYSITDRASFEKASELRIQL 137 (211)
T ss_dssp HCCCCCCSEEEEEEETTCHHHHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHH
Confidence 22 999999999999998765
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.58 E-value=4.7e-15 Score=99.73 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=65.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeC---CEEEEEEECCCcccccc-cccc-
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN---TVRLNFWDLGGQLELQS-LWDK- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~D~~G~~~~~~-~~~~- 88 (125)
++.+||+++|++|||||||+++ +.+.|...+. +++.++..+..+ ++.+.+||++|+++++. ++..
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 75 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT---------SITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRF 75 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC---------CCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC---------CcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHH
Confidence 5678999999999999999999 6667766653 344555556665 58999999999999887 5543
Q ss_pred -----------cccCcc-CHHHHHHHHhhhccc-ccCCCCeEEEEeec
Q psy9521 89 -----------DIRDCM-GVREVKPIFNKNSAH-LIGRRDCMVMPVSA 123 (125)
Q Consensus 89 -----------Di~~~~-s~~~i~~~l~~~~~~-~~~~~~~~i~~~sA 123 (125)
|.++.. ++.++..|+...... .....+.+++.+..
T Consensus 76 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~n 123 (214)
T 2fh5_B 76 KSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123 (214)
T ss_dssp GGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEE
T ss_pred HhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEE
Confidence 877743 466666544432011 12234456665543
No 107
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=7.7e-14 Score=91.75 Aligned_cols=83 Identities=17% Similarity=0.239 Sum_probs=59.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccce--eeEEEEeCCEEEEEEECCCcccccc------cc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGL--NIGQIDINTVRLNFWDLGGQLELQS------LW 86 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~i~D~~G~~~~~~------~~ 86 (125)
+.+||+++|++|||||||++++. ..+..... |++.. ....+..++..+.+||++|++++.. ++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~--------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 77 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIA 77 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEEC--------TTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCC--------CCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHH
Confidence 57899999999999999999954 44443333 44433 3346677789999999999998752 11
Q ss_pred cc-----------cccCccCHHHHHHHHhhh
Q psy9521 87 DK-----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 87 ~~-----------Di~~~~s~~~i~~~l~~~ 106 (125)
.. .+.+..+++....|+.++
T Consensus 78 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~ 108 (188)
T 2wjg_A 78 RDYIINEKPDLVVNIVDATALERNLYLTLQL 108 (188)
T ss_dssp HHHHHHHCCSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHhccCCCEEEEEecchhHHHHHHHHHHH
Confidence 11 445566788888888776
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.50 E-value=2.5e-13 Score=88.09 Aligned_cols=60 Identities=20% Similarity=0.304 Sum_probs=42.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCcccccc--ceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTV--GLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~--~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
++++|+++|++|||||||++++. ..+..... |+. ......+..++..+.+|||+|++++.
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~--------~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~ 64 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNW--------PGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------------CCCCCEEEEEETTEEEEEEECCCCSCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCC--------CCcceeeeEEEEEECCcEEEEEECCCcccCC
Confidence 35899999999999999999954 34332221 333 33334566678999999999999875
No 109
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.49 E-value=2.5e-14 Score=96.43 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=60.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc----
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK---- 88 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---- 88 (125)
..+.++|+++|++|||||||+++ +.+.+... .....|+++.++ .+..+.+||++|+++++..+..
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----VVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-----CCCSSCEEETTG-----GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-----eeecCceEEEEe-----eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 34678999999999999999999 44444321 011225554433 4578999999999988765443
Q ss_pred ------------ccc-CccCHHHHHHHHhhh
Q psy9521 89 ------------DIR-DCMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~-~~~s~~~i~~~l~~~ 106 (125)
|.+ ++.+|+++..|+..+
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~ 109 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 109 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHH
Confidence 888 889999999988876
No 110
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.47 E-value=2.2e-14 Score=94.29 Aligned_cols=77 Identities=19% Similarity=0.218 Sum_probs=54.9
Q ss_pred EEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC-----------ccccccc
Q psy9521 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG-----------QLELQSL 85 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~ 85 (125)
+||+++|++|||||||+++ +.+.+...+. |++......+... .+.+||++| +++++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 71 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKR--------PGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDE 71 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSS--------TTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCC--------CCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHH
Confidence 5899999999999999999 5555554443 5444444444444 688999999 6666544
Q ss_pred ccc-------------cccCccCHHHH-HHHHh
Q psy9521 86 WDK-------------DIRDCMGVREV-KPIFN 104 (125)
Q Consensus 86 ~~~-------------Di~~~~s~~~i-~~~l~ 104 (125)
+.. |+.++.+|+++ ..|..
T Consensus 72 ~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~ 104 (190)
T 2cxx_A 72 IVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEK 104 (190)
T ss_dssp HHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCEEEEEEcchhhhhHHHhhhc
Confidence 321 88899999888 46765
No 111
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.7e-14 Score=95.36 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=56.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc-----
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK----- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~----- 88 (125)
.+.++|+++|++|||||||++++ .+.+... .....|+.+.++ .+..+.+||++|++.++..+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~-----~~~~~~~~~~~~-----~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 115 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-----VVSQEPLSAADY-----DGSGVTLVDFPGHVKLRYKLSDYLKTR 115 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-----------------CC-----CCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc-----cccCCCceeeee-----cCCeEEEEECCCCchHHHHHHHHHHhh
Confidence 56789999999999999999995 4443321 011124443332 4578899999999988665443
Q ss_pred -----------ccc-CccCHHHHHHHHhhh
Q psy9521 89 -----------DIR-DCMGVREVKPIFNKN 106 (125)
Q Consensus 89 -----------Di~-~~~s~~~i~~~l~~~ 106 (125)
|.+ +..+|+++..|+..+
T Consensus 116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~ 145 (193)
T 2ged_A 116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDI 145 (193)
T ss_dssp GGGEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEEECCCCchhHHHHHHHHHHH
Confidence 888 888999999888776
No 112
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.46 E-value=6.2e-13 Score=86.94 Aligned_cols=84 Identities=24% Similarity=0.305 Sum_probs=54.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc-cc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc-------
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK-FT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS------- 84 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~-~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~------- 84 (125)
++..||+++|++|||||||++++.+. +. ..++ ..|.......+..++..+.+||++|++++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 74 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-------GTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGI 74 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-------TCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-------CceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHH
Confidence 35689999999999999999996543 21 1111 1233333346777888899999999975321
Q ss_pred --cccc-----------cccCccCHHHHHHHHhhh
Q psy9521 85 --LWDK-----------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 85 --~~~~-----------Di~~~~s~~~i~~~l~~~ 106 (125)
.+.. |.++..+++. ..|++++
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~ 108 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEF 108 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHH
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHH
Confidence 1111 8888888874 4565554
No 113
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.44 E-value=3.1e-13 Score=97.56 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=53.9
Q ss_pred cccccceeeEEEEeCCEEEEEEECCCcccccccccc------------ccc----------CccCHHHHHHHHhhhcccc
Q psy9521 53 ITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------------DIR----------DCMGVREVKPIFNKNSAHL 110 (125)
Q Consensus 53 ~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------------Di~----------~~~s~~~i~~~l~~~~~~~ 110 (125)
..||+|+....+..+++++++||++||++++.+|.. |++ +..+|++...|++.+ .+.
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i-~~~ 223 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI-MTN 223 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH-HHC
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH-hhh
Confidence 346789888888888999999999999999999988 777 788999999988877 222
Q ss_pred cCCCCeEEEEee
Q psy9521 111 IGRRDCMVMPVS 122 (125)
Q Consensus 111 ~~~~~~~i~~~s 122 (125)
....+++++.+-
T Consensus 224 ~~~~~~piiLv~ 235 (340)
T 4fid_A 224 EFLKGAVKLIFL 235 (340)
T ss_dssp GGGTTSEEEEEE
T ss_pred hccCCCeEEEEE
Confidence 222445666553
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.44 E-value=1.3e-13 Score=90.84 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=37.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeE-EEEeCCEEEEEEECCC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIG-QIDINTVRLNFWDLGG 78 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~D~~G 78 (125)
....+||+++|++|||||||++++.+.....+. ++.+.+.. .....+..+.+||++|
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~t~~~~~~~~~~~~~i~Dt~G 77 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVS--------KTPGKTRSINFYLVNSKYYFVDLPG 77 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCC--------SSCCCCCCEEEEEETTTEEEEECCC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCcccccc--------CCCCCccCeEEEEECCcEEEEECCC
Confidence 346689999999999999999995433232222 44433322 1112245688999999
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.43 E-value=2.3e-13 Score=89.89 Aligned_cols=82 Identities=20% Similarity=0.261 Sum_probs=47.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCC----------cc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGG----------QL 80 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G----------~~ 80 (125)
....++|+++|++|||||||+++ +.+.|...+. ++.+.+.. ....+ ..+.+||++| ++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~ 90 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTS--------SKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSERE 90 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC---------------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccC--------CCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHH
Confidence 34679999999999999999999 5554554443 44433321 22222 3689999999 66
Q ss_pred cccccccc---------------cccCccCHHHHH--HHHh
Q psy9521 81 ELQSLWDK---------------DIRDCMGVREVK--PIFN 104 (125)
Q Consensus 81 ~~~~~~~~---------------Di~~~~s~~~i~--~~l~ 104 (125)
.++.++.. |.++..++.+.. .|+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~ 131 (195)
T 1svi_A 91 AWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLK 131 (195)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH
Confidence 66544332 777777776643 4443
No 116
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.41 E-value=1.3e-12 Score=88.85 Aligned_cols=59 Identities=19% Similarity=0.317 Sum_probs=41.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.+.+||+++|++|||||||+++ +.+.+..... ...|....+..+..++..+.+||++|+
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~------~~~t~~~~~~~~~~~~~~~~l~DtpG~ 86 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSY------SFTTKNLYVGHFDHKLNKYQIIDTPGL 86 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----------CEEEEEEEETTEEEEEEECTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCC------CCcceeeeeeeeecCCCeEEEEECCCC
Confidence 4679999999999999999999 5555542211 012444555556667899999999999
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.41 E-value=3.4e-13 Score=102.34 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=55.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEE--------e----CCEEEEEEECCCccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQID--------I----NTVRLNFWDLGGQLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~--------~----~~~~~~i~D~~G~~~ 81 (125)
...+||+++|.+|||||||+++ +.+.+...+. ||++.++.+.. . .++.+.+||++|++.
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~--------~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKES--------QTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCC--------CccceEEEEeccccccceeecCCCceEEEEEEECCcHHH
Confidence 4679999999999999999999 5667766666 88888876431 1 148999999999999
Q ss_pred ccccccc---------cccCccCHHHHHHHHhhh
Q psy9521 82 LQSLWDK---------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 82 ~~~~~~~---------Di~~~~s~~~i~~~l~~~ 106 (125)
++.++.. =+-|..+++.+..|+.++
T Consensus 111 ~~~~~~~~l~~~d~ii~V~D~s~~~~~~~~~~~l 144 (535)
T 3dpu_A 111 MHASHQFFMTRSSVYMLLLDSRTDSNKHYWLRHI 144 (535)
T ss_dssp TTTTCHHHHHSSEEEEEEECGGGGGGHHHHHHHH
T ss_pred HHHHHHHHccCCcEEEEEEeCCCchhHHHHHHHH
Confidence 9887765 112233457777787776
No 118
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.40 E-value=3.9e-12 Score=91.41 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred ccccceeeEEEEeCCEEEEEEECCCcccccccccc------------ccc----------CccCHHHHHHHHhhhccccc
Q psy9521 54 TTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------------DIR----------DCMGVREVKPIFNKNSAHLI 111 (125)
Q Consensus 54 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------------Di~----------~~~s~~~i~~~l~~~~~~~~ 111 (125)
.||+|+....++.+++++++||++||++++.+|.. |++ +..+|++...|++.+ .+..
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i-~~~~ 230 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI-ITYP 230 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH-HTSG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH-hhhh
Confidence 47789888888889999999999999999999988 443 778888888888877 2222
Q ss_pred CCCCeEEEEee
Q psy9521 112 GRRDCMVMPVS 122 (125)
Q Consensus 112 ~~~~~~i~~~s 122 (125)
...+++++.+-
T Consensus 231 ~~~~~~iiL~~ 241 (327)
T 3ohm_A 231 WFQNSSVILFL 241 (327)
T ss_dssp GGTTCEEEEEE
T ss_pred ccCCceEEEEE
Confidence 22445666553
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.38 E-value=1.9e-13 Score=94.92 Aligned_cols=85 Identities=12% Similarity=0.204 Sum_probs=55.2
Q ss_pred cCceEEEEEEeCC---------CCcHHHHHHH-Hh---hccccccCCCCCCcccccc-ceeeE--E--------------
Q psy9521 14 RKDEFCVLILGLD---------NAGKTTYLES-AK---TKFTKNYKGMNPSKITTTV-GLNIG--Q-------------- 63 (125)
Q Consensus 14 ~~~~~ki~v~G~~---------~~GKTsl~~~-i~---~~~~~~~~~~~~~~~~~t~-~~~~~--~-------------- 63 (125)
..+.+||+++|++ |||||||+++ +. +.+..++. ||+ +.++. .
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~--------~t~~~~~~~~~~i~~~~~~~~~~~~~ 87 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHT--------SVLSTSDFGGRVVNNDHFLYWGEVSR 87 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCC--------CEECHHHHTSTTTTTCSEEEEEEEC-
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccC--------CcccccccceeEeecccccccccccc
Confidence 3567999999999 9999999999 55 34554444 443 33321 1
Q ss_pred --EEeCCEEEEEEE-----------------------CCCccccccccc--------------------------c----
Q psy9521 64 --IDINTVRLNFWD-----------------------LGGQLELQSLWD--------------------------K---- 88 (125)
Q Consensus 64 --~~~~~~~~~i~D-----------------------~~G~~~~~~~~~--------------------------~---- 88 (125)
++...+.+++|| ++|+++|+.++. .
T Consensus 88 ~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 167 (255)
T 3c5h_A 88 SLEDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFL 167 (255)
T ss_dssp --------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEE
T ss_pred cccCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEE
Confidence 122347899999 666665544332 1
Q ss_pred ---cccCc--cCHHHHHHHHhhh
Q psy9521 89 ---DIRDC--MGVREVKPIFNKN 106 (125)
Q Consensus 89 ---Di~~~--~s~~~i~~~l~~~ 106 (125)
|++++ .||+++..|+.++
T Consensus 168 lV~D~t~~~~~s~~~~~~~l~~i 190 (255)
T 3c5h_A 168 LGIDVSRGMNRNFDDQLKFVSNL 190 (255)
T ss_dssp EEEECBC----CHHHHHHHHHHH
T ss_pred EEEECCCCchhhHHHHHHHHHHH
Confidence 88888 9999999999876
No 120
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.36 E-value=6.6e-12 Score=87.43 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=45.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccc-cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFT-KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
.+.+||+++|.+|||||||++++. ..+. ..++ ..|+......+..++..+.+||++|++.+...
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~p-------g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 68 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWP-------GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYS 68 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECT-------TSCCEEEEEEEEETTEEEEEEECCCCSSCCSS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCC-------CceEEEEEEEEEECCeEEEEEECCCcCccCCC
Confidence 467899999999999999999954 3433 2221 12333333456667899999999999887654
No 121
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.35 E-value=5.7e-12 Score=91.47 Aligned_cols=69 Identities=16% Similarity=0.275 Sum_probs=53.2
Q ss_pred ccccceeeEEEEeCCEEEEEEECCCcccccccccc------------cccC----------ccCHHHHHHHHhhhccccc
Q psy9521 54 TTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------------DIRD----------CMGVREVKPIFNKNSAHLI 111 (125)
Q Consensus 54 ~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------------Di~~----------~~s~~~i~~~l~~~~~~~~ 111 (125)
.||+|++...+..+++.+++||++||++++.+|.. |+++ ..++++...|++.+ .+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i-~~~~ 256 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI-CNNK 256 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH-HTCG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH-HcCc
Confidence 36788887788888999999999999999999998 8887 57799999999887 2221
Q ss_pred CCCCeEEEEeec
Q psy9521 112 GRRDCMVMPVSA 123 (125)
Q Consensus 112 ~~~~~~i~~~sA 123 (125)
...+.+++.+..
T Consensus 257 ~~~~~piiLv~N 268 (353)
T 1cip_A 257 WFTDTSIILFLN 268 (353)
T ss_dssp GGTTSEEEEEEE
T ss_pred cccCCcEEEEEE
Confidence 124466665543
No 122
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.34 E-value=1.1e-11 Score=91.18 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=52.8
Q ss_pred cccceeeEEEEeCCEEEEEEECCCcccccccccc------------cccC----------ccCHHHHHHHHhhhcccccC
Q psy9521 55 TTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------------DIRD----------CMGVREVKPIFNKNSAHLIG 112 (125)
Q Consensus 55 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------------Di~~----------~~s~~~i~~~l~~~~~~~~~ 112 (125)
+|+|++...+..+++.+++||++||++++.+|.. |+++ ..+|+++..|++.+ .+...
T Consensus 203 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i-~~~~~ 281 (402)
T 1azs_C 203 LTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI-WNNRW 281 (402)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH-HTCTT
T ss_pred ceeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHH-Hhccc
Confidence 3667777777888899999999999999999988 8888 89999999999987 22212
Q ss_pred CCCeEEEEeec
Q psy9521 113 RRDCMVMPVSA 123 (125)
Q Consensus 113 ~~~~~i~~~sA 123 (125)
..+++++.+-.
T Consensus 282 ~~~~piiLvgN 292 (402)
T 1azs_C 282 LRTISVILFLN 292 (402)
T ss_dssp CSSCCEEEEEE
T ss_pred CCCCeEEEEEE
Confidence 24456655543
No 123
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.32 E-value=1.7e-11 Score=85.35 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=45.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hcc--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKF--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
.++++|+++|..|+|||||++++. +.+ ...+. ..|.......+..++..+.+|||+|++++...
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~ 100 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQ-------AEGLRPVMVSRTMGGFTINIIDTPGLVEAGYV 100 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSC-------C-CCCCEEEEEEETTEEEEEEECCCSEETTEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-------CcceeeEEEEEEECCeeEEEEECCCCCCcccc
Confidence 368999999999999999999954 332 11111 12344444456778899999999999877543
No 124
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.28 E-value=3.6e-12 Score=85.94 Aligned_cols=62 Identities=18% Similarity=0.070 Sum_probs=39.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhcc-ccccCCCCCCccccccceeeEEEE-eCCEEEEEEECCCc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKF-TKNYKGMNPSKITTTVGLNIGQID-INTVRLNFWDLGGQ 79 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~-~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~ 79 (125)
....++|+++|..|||||||++++.+.. ..... .....|....+..+. .++..+.+|||+|.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~----~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~ 89 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFAS----KTPGRTQHINYFSVGPAAEPVAHLVDLPGY 89 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTT----CCCCSCCCEEEEEESCTTSCSEEEEECCCC
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeec----CCCCcccceEEEEecCCCCCcEEEEcCCCC
Confidence 3467899999999999999999954432 11111 011123344444443 34588999999994
No 125
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.27 E-value=4.7e-11 Score=76.19 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=39.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHh-hccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAK-TKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~-~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.||+++|++|||||||++++. +.+. ..+. ..|.......+..++..+.+||++|++.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 62 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVP-------GVTRDLKEGVVETDRGRFLLVDTGGLWSG 62 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------------CCEEEEEEETTEEEEEEECGGGCSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCC-------CceecceEEEEEeCCceEEEEECCCCCCc
Confidence 479999999999999999954 3322 1111 12333334456677889999999999874
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.27 E-value=2.7e-11 Score=84.91 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=44.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
++++|+++|.+|||||||++++.+ .+..... ...|+......+...+..+.+||++|+..+..
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~------~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~ 65 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNW------AGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEEC------TTSSSEEEEEEEECSSCEEEEEECCCCSCSCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCC------CCeeEEEEEEEEEeCCCceEEEECcCCCcccc
Confidence 468999999999999999999543 3322211 01233333445666778999999999988773
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.25 E-value=5.5e-12 Score=93.64 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=38.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHH-hhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESA-KTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i-~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
..+||+++|.+|||||||++++ .+.+. ..+. ..|.......+..++..+.+|||+|+
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~-------gtT~d~~~~~~~~~~~~~~l~DT~G~ 233 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-------GTTRDAVDTSFTYNQQEFVIVDTAGM 233 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------------CCEEEEETTEEEEETTHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCC-------CceeeeeEEEEEECCeEEEEEECCCc
Confidence 4589999999999999999994 44432 2221 12333333466778889999999998
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.25 E-value=1.9e-11 Score=91.86 Aligned_cols=84 Identities=18% Similarity=0.121 Sum_probs=45.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc-c--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc---
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK-F--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK--- 88 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~-~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~--- 88 (125)
+..+||+++|.+|||||||++++.+. . ...++ ..|.......+..++..+.+|||+|++++...+..
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-------gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi 303 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-------GTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGI 303 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC-------------------------CEEEEETTEEEEEEC----------------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-------CceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHH
Confidence 46789999999999999999995432 2 22221 12333334567788999999999999776543211
Q ss_pred -----------------cccCccCHH---HHHHHHhh
Q psy9521 89 -----------------DIRDCMGVR---EVKPIFNK 105 (125)
Q Consensus 89 -----------------Di~~~~s~~---~i~~~l~~ 105 (125)
|.++..+++ +...|++.
T Consensus 304 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~ 340 (476)
T 3gee_A 304 RRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA 340 (476)
T ss_dssp ----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH
T ss_pred HHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh
Confidence 888888886 34445554
No 129
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.24 E-value=6.6e-11 Score=82.63 Aligned_cols=61 Identities=21% Similarity=0.204 Sum_probs=44.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceee--EEEEeCCEEEEEEECCCcccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNI--GQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+.++|+++|++|||||||++++. ..+..... |++..+. ..+..++..+.+||++|+..+..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~--------~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNW--------PGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEEC--------TTSSCEEEEEEEEETTEEEEEEECCCCSCCCS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCC--------CCeEEEeeEEEEEECCceEEEEeCCCcccccc
Confidence 35789999999999999999954 33322222 4444443 35667788999999999987765
No 130
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.24 E-value=4.7e-11 Score=83.05 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=42.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc-cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK-FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|+++|.+|||||||++++.+. +..... ...|+......+..++..+.+||+||+..+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~------pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNW------PGVTVEKKTGEFLLGEHLIEITDLPGVYSLVA 63 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEEC------TTSSSEEEEEEEEETTEEEEEEECCCCSSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCC------CCceEEEEEEEEEECCeEEEEEeCCCcccccc
Confidence 6999999999999999996543 222111 01333344446777889999999999987764
No 131
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.23 E-value=2.1e-11 Score=91.65 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=46.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hh--cccccc----------------------CC-CCCCccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KT--KFTKNY----------------------KG-MNPSKITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~--~~~~~~----------------------~~-~~~~~~~~t~~~~~~~~~~~ 67 (125)
.++.+||+++|..++|||||++++ .. .+...+ .. ........|+...+..+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 467899999999999999999994 33 111000 00 00001113444444456667
Q ss_pred CEEEEEEECCCccccccc
Q psy9521 68 TVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~~~ 85 (125)
+..+.+||++|+++|...
T Consensus 110 ~~~~~iiDTPG~~~f~~~ 127 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPN 127 (483)
T ss_dssp SCEEEEECCCCCGGGHHH
T ss_pred CceEEEEECCCcHHHHHH
Confidence 899999999999987654
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.23 E-value=9.6e-12 Score=92.82 Aligned_cols=66 Identities=17% Similarity=0.174 Sum_probs=43.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc--c-ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCC----------ccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK--F-TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG----------QLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~--~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G----------~~~ 81 (125)
...+||+++|.+|||||||++++.+. . ...+. ..|.......+..++..+.+|||+| +|+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~-------gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~ 265 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-------GTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEK 265 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCC-------CeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHH
Confidence 35689999999999999999995432 1 12221 1222222345677888999999999 677
Q ss_pred cccccc
Q psy9521 82 LQSLWD 87 (125)
Q Consensus 82 ~~~~~~ 87 (125)
|..++.
T Consensus 266 ~~~~~~ 271 (456)
T 4dcu_A 266 YSVLRA 271 (456)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 133
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.22 E-value=4.8e-11 Score=88.58 Aligned_cols=73 Identities=15% Similarity=0.193 Sum_probs=44.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hhc---cccc---------cCCCCCC---------------ccccccceeeEEEE
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KTK---FTKN---------YKGMNPS---------------KITTTVGLNIGQID 65 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~~---~~~~---------~~~~~~~---------------~~~~t~~~~~~~~~ 65 (125)
.++.++|+++|..++|||||++++ .+. +..+ ..+.... ....|+...+..+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 356799999999999999999994 432 1110 0000000 00123333344556
Q ss_pred eCCEEEEEEECCCcccccccc
Q psy9521 66 INTVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 66 ~~~~~~~i~D~~G~~~~~~~~ 86 (125)
.++..+.+||++|+++|...+
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~ 121 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNM 121 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHH
T ss_pred cCCceEEEEECCChHHHHHHH
Confidence 677899999999999885443
No 134
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.21 E-value=3.1e-10 Score=80.81 Aligned_cols=88 Identities=24% Similarity=0.187 Sum_probs=59.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeC-CEEEEEEECCCccccc--------
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDIN-TVRLNFWDLGGQLELQ-------- 83 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~D~~G~~~~~-------- 83 (125)
..+.-.|+++|.+|||||||++++.+ ++.. .......|..........+ +.++.+|||+|+....
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i-----~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~ 81 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVSI-----ISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHS 81 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCSC-----CCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCccc-----cCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHH
Confidence 34677899999999999999999543 3321 1112223444333455666 8999999999997654
Q ss_pred --ccccc------------cccCccCHHHHHHHHhhh
Q psy9521 84 --SLWDK------------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 84 --~~~~~------------Di~~~~s~~~i~~~l~~~ 106 (125)
..+.. |.++..++++...|++.+
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l 118 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI 118 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH
Confidence 11111 888888888877777765
No 135
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.19 E-value=7e-11 Score=82.89 Aligned_cols=59 Identities=22% Similarity=0.276 Sum_probs=40.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc--cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK--FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
.+||+++|++|||||||++++.+. +..+++ ..|+......+.. +..+.+||++|++.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p-------g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP-------GVTVERKSGLVKK-NKDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS-------CCCCSCEEEECTT-CTTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC-------CCcEEEEEEEEec-CCeEEEEECCCcCccC
Confidence 578999999999999999996543 222222 1232222223333 6789999999998876
No 136
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.17 E-value=4.8e-11 Score=88.63 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=42.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hh--ccccccC----------CC-------------CCCccccccceeeEEEEeCC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KT--KFTKNYK----------GM-------------NPSKITTTVGLNIGQIDINT 68 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~--~~~~~~~----------~~-------------~~~~~~~t~~~~~~~~~~~~ 68 (125)
++.++|+++|..++|||||++++ .+ .+...+. +. .......|+...+..+..++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 56789999999999999999994 42 2211100 00 00011145555555666678
Q ss_pred EEEEEEECCCccccccc
Q psy9521 69 VRLNFWDLGGQLELQSL 85 (125)
Q Consensus 69 ~~~~i~D~~G~~~~~~~ 85 (125)
..+.+||++|+++|...
T Consensus 84 ~~~~iiDtpG~~~f~~~ 100 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKN 100 (435)
T ss_dssp CEEEECCCSSSTTHHHH
T ss_pred eEEEEEECCCcHHHHHH
Confidence 99999999999988543
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.17 E-value=7.8e-11 Score=86.65 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=23.3
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+++.++|+++|+.++|||||++++.+
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~ 30 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITG 30 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999999654
No 138
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.17 E-value=4.7e-11 Score=87.72 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=44.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCC---------C--CccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMN---------P--SKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~---------~--~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
++.++|+++|..++|||||++++.+.......... . .....|+...+..+..++..+.+||++|+++|.
T Consensus 1 k~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (397)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHH
Confidence 46789999999999999999995432110000000 0 011134444444455567899999999998875
Q ss_pred c
Q psy9521 84 S 84 (125)
Q Consensus 84 ~ 84 (125)
.
T Consensus 81 ~ 81 (397)
T 1d2e_A 81 K 81 (397)
T ss_dssp H
T ss_pred H
Confidence 4
No 139
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.17 E-value=6.4e-11 Score=87.23 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=43.2
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCcccc--ccceeeEEEEe---------------C--------
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITT--TVGLNIGQIDI---------------N-------- 67 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~---------------~-------- 67 (125)
.+++.++|+++|..++|||||++++.+.+..... .+..+ |+...+..... +
T Consensus 4 ~r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~----~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~ 79 (408)
T 1s0u_A 4 GSQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHS----EELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEF 79 (408)
T ss_dssp -CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-----------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEE
T ss_pred ccCCceEEEEEcCCCCCHHHHHHHHhCCccccCc----ccccCCcEEEecccccccccccccccccccccccccCccccc
Confidence 3567899999999999999999997543321111 11113 66554432211 1
Q ss_pred CEEEEEEECCCcccccc
Q psy9521 68 TVRLNFWDLGGQLELQS 84 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~~ 84 (125)
...+.+||++|+++|..
T Consensus 80 ~~~i~iiDtPGh~~f~~ 96 (408)
T 1s0u_A 80 LRRVSFVDSPGHETLMA 96 (408)
T ss_dssp EEEEEEEECSSHHHHHH
T ss_pred ccEEEEEECCCHHHHHH
Confidence 16899999999988754
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.16 E-value=2.7e-11 Score=91.13 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=42.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccc-cCC-CCCCccccccceeeEEEEeCCEEEEEEECCCccccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKN-YKG-MNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL 85 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~-~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 85 (125)
+.++|+++|..++|||||++++.+..... ... ........|+...+..+..++..+.+||++|+++|...
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~ 89 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRA 89 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHH
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHH
Confidence 57899999999999999999965432000 000 00011124555555566778899999999999887443
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.16 E-value=1.2e-10 Score=86.68 Aligned_cols=73 Identities=18% Similarity=0.186 Sum_probs=46.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hh--cccccc---------------------CCCCCCc--cccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KT--KFTKNY---------------------KGMNPSK--ITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~--~~~~~~---------------------~~~~~~~--~~~t~~~~~~~~~~~ 67 (125)
.+..++|+++|..++|||||++++ .. ...... ......+ ...|+...+..+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 357799999999999999999995 32 110000 0000000 113444444566777
Q ss_pred CEEEEEEECCCcccccccc
Q psy9521 68 TVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~~~~ 86 (125)
+..+.+||++|+++|....
T Consensus 94 ~~~~~iiDTPGh~~f~~~~ 112 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNM 112 (439)
T ss_pred CeEEEEEECCChHHHHHHH
Confidence 8999999999999875543
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.16 E-value=3.9e-10 Score=81.83 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=41.4
Q ss_pred CCEEEEEEECCCcccccccccc------------ccc----------CccCHHHHHHHHhhhcccccCCCCeEEEEeec
Q psy9521 67 NTVRLNFWDLGGQLELQSLWDK------------DIR----------DCMGVREVKPIFNKNSAHLIGRRDCMVMPVSA 123 (125)
Q Consensus 67 ~~~~~~i~D~~G~~~~~~~~~~------------Di~----------~~~s~~~i~~~l~~~~~~~~~~~~~~i~~~sA 123 (125)
+.+.+++||++||++++.+|.. |++ +..+|+++..|++.+ .+.....+++++.+-.
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i-~~~~~~~~~piiLvgN 258 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWV-LKQPCFEKTSFMLFLN 258 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHH-HTCGGGSSCEEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHH-HhccccCCCeEEEEEE
Confidence 3489999999999999999988 877 889999999999887 2221224566666543
No 143
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.15 E-value=6.7e-10 Score=78.90 Aligned_cols=62 Identities=24% Similarity=0.169 Sum_probs=40.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
+..+|+++|.+|||||||++++ ..++.... ...+.|.......+..++.++.+|||+|+.+.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-----~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~ 68 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-----PRPQTTRKRLRGILTEGRRQIVFVDTPGLHKP 68 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-----SSSCCCCSCEEEEEEETTEEEEEEECCCCCCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec-----CCCCceeEEEEEEEEeCCcEEEEecCccccch
Confidence 4567999999999999999994 44432110 11112322222234456799999999998764
No 144
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.15 E-value=5.9e-11 Score=91.51 Aligned_cols=71 Identities=15% Similarity=0.212 Sum_probs=45.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcccc--c-----------cCCCCCC-------------ccccccceeeEEEEeCC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTK--N-----------YKGMNPS-------------KITTTVGLNIGQIDINT 68 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~--~-----------~~~~~~~-------------~~~~t~~~~~~~~~~~~ 68 (125)
++.+||+++|..++|||||++++.+.... + ..+...- ....|+...+..+...+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 56899999999999999999995322100 0 0000000 01134444445666778
Q ss_pred EEEEEEECCCccccccc
Q psy9521 69 VRLNFWDLGGQLELQSL 85 (125)
Q Consensus 69 ~~~~i~D~~G~~~~~~~ 85 (125)
..+.+|||+|+++|...
T Consensus 245 ~~~~iiDTPG~e~f~~~ 261 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPN 261 (611)
T ss_dssp CEEEEEECCSSSCHHHH
T ss_pred ceEEEEECCCCcccHHH
Confidence 99999999999887544
No 145
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.13 E-value=1.4e-10 Score=85.48 Aligned_cols=66 Identities=21% Similarity=0.320 Sum_probs=44.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhc----cccccCCCCCCccccccceeeEEEEe---------------C------
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTK----FTKNYKGMNPSKITTTVGLNIGQIDI---------------N------ 67 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~----~~~~~~~~~~~~~~~t~~~~~~~~~~---------------~------ 67 (125)
.+++.++|+++|..++|||||++++.+. +..++. ...|+...+..... +
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~------~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~ 79 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELR------RGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHET 79 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGG------SCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBC
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhc------CCcEEEEeeeeeecccccccccccccccccccCccc
Confidence 3467899999999999999999996543 222222 01266555442222 1
Q ss_pred --CEEEEEEECCCcccccc
Q psy9521 68 --TVRLNFWDLGGQLELQS 84 (125)
Q Consensus 68 --~~~~~i~D~~G~~~~~~ 84 (125)
...+.+||++|++.|..
T Consensus 80 ~~~~~i~iiDtPGh~~f~~ 98 (410)
T 1kk1_A 80 EFVRRVSFIDAPGHEALMT 98 (410)
T ss_dssp EEEEEEEEEECSSHHHHHH
T ss_pred ccccEEEEEECCChHHHHH
Confidence 16899999999988744
No 146
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.13 E-value=1.6e-10 Score=85.08 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=45.2
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccccC-CC-------CCC----ccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYK-GM-------NPS----KITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~-~~-------~~~----~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.++.++|+++|..++|||||++++.+....... .. ... ....|+......+..++..+.+||++|+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 467899999999999999999995442111100 00 000 011233333334555678999999999998
Q ss_pred ccccc
Q psy9521 82 LQSLW 86 (125)
Q Consensus 82 ~~~~~ 86 (125)
|....
T Consensus 88 f~~~~ 92 (405)
T 2c78_A 88 YIKNM 92 (405)
T ss_dssp GHHHH
T ss_pred HHHHH
Confidence 75443
No 147
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.12 E-value=1.1e-10 Score=84.81 Aligned_cols=75 Identities=20% Similarity=0.277 Sum_probs=38.0
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHh--hccccccCCCCCCccccccceeeEEE--EeCC--EEEEEEECCCc-------
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAK--TKFTKNYKGMNPSKITTTVGLNIGQI--DINT--VRLNFWDLGGQ------- 79 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~--~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~i~D~~G~------- 79 (125)
.+...++|+++|++|+|||||++++. +.+...+.........+|++.....+ ..++ ..+++||++|+
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 34567899999999999999999953 33333221111222336666665433 2234 57999999999
Q ss_pred cccccccc
Q psy9521 80 LELQSLWD 87 (125)
Q Consensus 80 ~~~~~~~~ 87 (125)
+.++.++.
T Consensus 113 e~~~~i~~ 120 (361)
T 2qag_A 113 DCFKTIIS 120 (361)
T ss_dssp ---CCTHH
T ss_pred HHHHHHHH
Confidence 77777765
No 148
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.12 E-value=2.7e-10 Score=84.61 Aligned_cols=61 Identities=25% Similarity=0.215 Sum_probs=38.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc-c--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK-F--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~-~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
..+|++++|++|||||||++++.+. + ...++ ..|.......+..++..+.+|||+|+++..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~-------gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~ 242 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIP-------GTTRDPVDDEVFIDGRKYVFVDTAGLRRKS 242 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------------CCEEEEETTEEEEESSCSCC----
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCC-------CCcCCceEEEEEECCEEEEEEECCCCcccc
Confidence 3489999999999999999995543 2 12221 122223334677788899999999985443
No 149
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.11 E-value=1.1e-10 Score=87.50 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=40.7
Q ss_pred hhhccCceEEEEEEeCCCCcHHHHHHHH-h--hcccc--------cc--CC-------------CCCCccccccceeeEE
Q psy9521 10 KYMLRKDEFCVLILGLDNAGKTTYLESA-K--TKFTK--------NY--KG-------------MNPSKITTTVGLNIGQ 63 (125)
Q Consensus 10 ~~~~~~~~~ki~v~G~~~~GKTsl~~~i-~--~~~~~--------~~--~~-------------~~~~~~~~t~~~~~~~ 63 (125)
+..+.++.++|+++|..++|||||++++ . +.+.. +. .+ ........|++..+..
T Consensus 36 ~~~~~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~ 115 (467)
T 1r5b_A 36 KDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAY 115 (467)
T ss_dssp HHHSCCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCE
T ss_pred HhhcCCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEE
Confidence 3345678899999999999999999994 3 22210 00 00 0001123566665556
Q ss_pred EEeCCEEEEEEECCCcccccccc
Q psy9521 64 IDINTVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 64 ~~~~~~~~~i~D~~G~~~~~~~~ 86 (125)
+..++..+.+||++|+++|...+
T Consensus 116 ~~~~~~~~~iiDtPGh~~f~~~~ 138 (467)
T 1r5b_A 116 FETEHRRFSLLDAPGHKGYVTNM 138 (467)
T ss_dssp EECSSEEEEECCCCC--------
T ss_pred EecCCeEEEEEECCCcHHHHHHH
Confidence 77778999999999999886543
No 150
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.09 E-value=4.3e-10 Score=78.46 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=43.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
.+.++|+++|.+|+|||||++++. ..+.. .. .....|.......+..++..+.+|||+|++++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~-~~----~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~ 102 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVS-IS----PFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY 102 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSC-CC----SSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccc-cc----CCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc
Confidence 368999999999999999999954 33311 11 0001222222234556789999999999977653
No 151
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.09 E-value=5e-10 Score=83.16 Aligned_cols=56 Identities=21% Similarity=0.254 Sum_probs=37.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh-cc--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKT-KF--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~-~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
+|+++|.+|||||||++++.+ +. ...++ ..|....+..+..++..+.+|||+|++.
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~-------g~T~d~~~~~~~~~~~~~~l~DT~G~~~ 61 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEE-------GVTRDPVQDTVEWYGKTFKLVDTCGVFD 61 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---------------------CCSEEEEEETTEEEEEEECTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCC-------CCccceeeEEEEECCeEEEEEECCCccc
Confidence 699999999999999999543 32 12221 1333344556777889999999999875
No 152
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.08 E-value=2.6e-10 Score=85.27 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=47.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hh--ccccc----------cCCCCC-------C------ccccccceeeEEEEeCC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KT--KFTKN----------YKGMNP-------S------KITTTVGLNIGQIDINT 68 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~--~~~~~----------~~~~~~-------~------~~~~t~~~~~~~~~~~~ 68 (125)
++.++|+++|..++|||||++++ .. .+... ..+... + ....|+...+..+..++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 46789999999999999999994 32 11110 000000 0 01245655556677778
Q ss_pred EEEEEEECCCccccccc
Q psy9521 69 VRLNFWDLGGQLELQSL 85 (125)
Q Consensus 69 ~~~~i~D~~G~~~~~~~ 85 (125)
..+.+||++|+++|...
T Consensus 85 ~~~~iiDtPGh~~f~~~ 101 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKN 101 (458)
T ss_dssp EEEEEEECCCCTTHHHH
T ss_pred ceEEEEECCCcHHHHHH
Confidence 99999999999887543
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.08 E-value=6.9e-10 Score=77.60 Aligned_cols=67 Identities=22% Similarity=0.319 Sum_probs=38.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHh--hccccccCCCCCCccccccceeeEEEEe--CC--EEEEEEECCCccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAK--TKFTKNYKGMNPSKITTTVGLNIGQIDI--NT--VRLNFWDLGGQLE 81 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~--~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~D~~G~~~ 81 (125)
+..+++|+++|.+|+|||||++++. +.+..+++ .+.....+|++.+...... ++ +.+.+|||+|...
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYP-GPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCC-CcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 4568999999999999999999943 33443331 1112224777777654433 33 6999999999853
No 154
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.07 E-value=4.9e-10 Score=76.66 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=40.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
...+||+++|.+|||||||++++. ..+..... .....|.......+..++..+.+|||+|.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~----~~~~~t~~~~~~~~~~~~~~i~liDTpG~ 88 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGT----AAKSITKKCEKRSSSWKETELVVVDTPGI 88 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-----------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCC----CCCceeeeEEEEEEEeCCceEEEEECCCc
Confidence 468999999999999999999954 44332221 00113334444466778899999999993
No 155
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.06 E-value=9.8e-11 Score=89.04 Aligned_cols=65 Identities=22% Similarity=0.309 Sum_probs=47.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceee--EEEEe-CCEEEEEEECCCcccccccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNI--GQIDI-NTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
+..+|+++|+.++|||||+++ ....+...+. +++..++ ..+.. ++..+.+|||||++.|..++..
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~--------~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~ 71 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA--------GGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRAR 71 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSS--------CCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccC--------CceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHH
Confidence 456799999999999999999 5555554443 3333332 23333 3568999999999999887765
No 156
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.06 E-value=5.1e-10 Score=77.31 Aligned_cols=63 Identities=13% Similarity=0.068 Sum_probs=41.1
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHh-hccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
...+.+||+++|.+|||||||++++. ........ .....|.......+..++..+.+|||+|.
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~----~~~~~T~~~~~~~~~~~~~~i~liDTPG~ 80 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILGQRRFFSRL----GATSVTRACTTGSRRWDKCHVEVVDTPDI 80 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHTSCCC-------------CCSCEEEEEEETTEEEEEEECCSC
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhCCCCccccC----CCCCccccEEEEEEEECCcEEEEEECCCC
Confidence 34578999999999999999999954 33221111 11113444445566778899999999996
No 157
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.05 E-value=7.4e-10 Score=76.57 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=43.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hc-cccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TK-FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.+.++|+++|.+|||||||++++. .. +...+. +...|.......+..++..+.+|||+|+..+
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~ 84 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLG-----SQTLTKTCSKSQGSWGNREIVIIDTPDMFSW 84 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT-----SCCCCCSCEEEEEEETTEEEEEEECCGGGGS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCC-----CCceeeeeEEEEEEeCCCEEEEEECcCCCCC
Confidence 467999999999999999999954 33 332222 1112344444456677899999999998654
No 158
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.05 E-value=3.1e-10 Score=82.76 Aligned_cols=53 Identities=17% Similarity=0.196 Sum_probs=43.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|+++|..++|||||++++. ++. .|+...+..+..++..+.+||++|+++|..
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~g--------iTi~~~~~~~~~~~~~i~iiDtPGh~~f~~ 75 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKG--------TSSDITMYNNDKEGRNMVFVDAHSYPKTLK 75 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEE--------EESSSEEEEECSSSSEEEEEECTTTTTCHH
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCC--------EEEEeeEEEEecCCeEEEEEECCChHHHHH
Confidence 89999999999999999954 222 677777767777788999999999998843
No 159
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.05 E-value=1.9e-09 Score=78.09 Aligned_cols=85 Identities=27% Similarity=0.332 Sum_probs=59.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcccc--ccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccccc-------
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTK--NYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSL------- 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------- 85 (125)
...++++++|.+|||||||++++.+.... .++ ..|.+.....+...+..+.+|||+|.......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~-------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 237 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYP-------FTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEK 237 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCT-------TCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCC-------CeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHH
Confidence 46689999999999999999996543221 111 14555555566667889999999998543210
Q ss_pred ------c--cc------cccCcc--CHHHHHHHHhhh
Q psy9521 86 ------W--DK------DIRDCM--GVREVKPIFNKN 106 (125)
Q Consensus 86 ------~--~~------Di~~~~--s~~~i~~~l~~~ 106 (125)
. .. |.++.. ++++...|+..+
T Consensus 238 ~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i 274 (357)
T 2e87_A 238 QAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV 274 (357)
T ss_dssp HHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence 0 00 877766 788888888876
No 160
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.05 E-value=4.1e-10 Score=81.99 Aligned_cols=58 Identities=28% Similarity=0.278 Sum_probs=38.5
Q ss_pred eEE-EEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCc
Q psy9521 17 EFC-VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79 (125)
Q Consensus 17 ~~k-i~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~ 79 (125)
.++ |+++|.+|||||||++++.+..... .+...+|.+.....+..++..+.+|||+|.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~-----~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~ 236 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKV-----DTKLFTTMSPKRYAIPINNRKIMLVDTVGF 236 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC----------------CCSCEEEEEETTEEEEEEECCCB
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccc-----cCCcccccCCEEEEEEECCEEEEEEeCCCc
Confidence 456 9999999999999999965432210 011225555555677788889999999997
No 161
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.03 E-value=4.7e-10 Score=84.00 Aligned_cols=62 Identities=21% Similarity=0.280 Sum_probs=37.4
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-hhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-KTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~ 83 (125)
+..+||+++|.+|||||||++++ ...+. ...+ ..|.......+..++..+.+|||+|++.+.
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-------gtT~d~~~~~i~~~g~~v~liDT~G~~~~~ 286 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP-------GTTRDVVESQLVVGGIPVQVLDTAGIRETS 286 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT-------TCCHHHHHHEEEETTEEEEECC--------
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-------CeeEEEEEEEEEECCEEEEEEECCccccch
Confidence 35789999999999999999995 43332 1211 122233233677789999999999986543
No 162
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.02 E-value=6.7e-10 Score=83.55 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=54.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-hcc--ccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc-ccccc------
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-TKF--TKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL-ELQSL------ 85 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~~~--~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~-~~~~~------ 85 (125)
..++|+++|.+|||||||++++. ..+ ..+++ ..|.......+..++..+.+|||+|++ ++...
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~-------gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi 314 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIP-------GTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGI 314 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSS-------CCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCC-------CeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHH
Confidence 45899999999999999999954 432 22222 134444445677789999999999998 55421
Q ss_pred ---ccc-----------cccCccCHHHHH
Q psy9521 86 ---WDK-----------DIRDCMGVREVK 100 (125)
Q Consensus 86 ---~~~-----------Di~~~~s~~~i~ 100 (125)
+.. |.++..++++.+
T Consensus 315 ~~~~~~~~~aD~vl~VvD~s~~~s~~~~~ 343 (482)
T 1xzp_A 315 ERTLQEIEKADIVLFVLDASSPLDEEDRK 343 (482)
T ss_dssp HHHHHHHHHCSEEEEEEETTSCCCHHHHH
T ss_pred HHHHHHhhcccEEEEEecCCCCCCHHHHH
Confidence 111 888888887653
No 163
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.00 E-value=3.4e-10 Score=84.02 Aligned_cols=59 Identities=20% Similarity=0.146 Sum_probs=32.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
.+|+++|.+|||||||++++.+....... +....|....+..+...+..+.+|||+|++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~----~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~ 62 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVE----DTPGVTRDRIYSSAEWLNYDFNLIDTGGID 62 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC---------------CEEEECTTCSSCCEEEC-----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeec----CCCCCccceEEEEEEECCceEEEEECCCCC
Confidence 57999999999999999996543322221 001122223333455567889999999986
No 164
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.98 E-value=5.2e-10 Score=86.03 Aligned_cols=73 Identities=15% Similarity=0.137 Sum_probs=33.8
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHH-hhc--ccccc----------CC-----------CCCC--ccccccceeeEEEEeC
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESA-KTK--FTKNY----------KG-----------MNPS--KITTTVGLNIGQIDIN 67 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i-~~~--~~~~~----------~~-----------~~~~--~~~~t~~~~~~~~~~~ 67 (125)
.+..++|+++|..++|||||++++ ... ..... .+ .... ....|+...+..+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 457789999999999999999995 311 10000 00 0000 0112333333455556
Q ss_pred CEEEEEEECCCcccccccc
Q psy9521 68 TVRLNFWDLGGQLELQSLW 86 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~~~~ 86 (125)
+..+.+|||+|+++|....
T Consensus 254 ~~~i~iiDTPGh~~f~~~~ 272 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGM 272 (592)
T ss_dssp -----CCEEESSSEEEEEC
T ss_pred CeEEEEEECCChHHHHHHH
Confidence 7899999999998876543
No 165
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.93 E-value=7e-09 Score=78.80 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=56.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh-h-c-----------------cccccCCCCCCccccccceeeEEEEeCCEEEEEEEC
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK-T-K-----------------FTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~-~-~-----------------~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~ 76 (125)
+..+|+++|.+|+|||||++++. . . +..... .......|+......+..++..+.+|||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~--~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWME--LEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHH--HHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccch--hhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45689999999999999999952 0 0 000000 0000012343344456677899999999
Q ss_pred CCcccccccccc------------cccCccCHHHHHHHHh
Q psy9521 77 GGQLELQSLWDK------------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 77 ~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~ 104 (125)
+|+++|...+.. |..+..+.+...-|..
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~ 129 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV 129 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH
Confidence 999988765443 7777777777665543
No 166
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.93 E-value=7.3e-10 Score=80.07 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=55.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccc----ccccccc---
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLE----LQSLWDK--- 88 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~----~~~~~~~--- 88 (125)
+|+++|.+|||||||++++.+..+ .+++ .+|...++..+..++ ..+.+||++|+.+ ++.+...
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~~~~-------ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~ 232 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIADYH-------FTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLR 232 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTT-------SSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHH
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccccCC-------ccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHH
Confidence 478999999999999999543322 1221 134444444566665 8899999999643 2222111
Q ss_pred ------------cccC---ccCHHHHHHHHhhh
Q psy9521 89 ------------DIRD---CMGVREVKPIFNKN 106 (125)
Q Consensus 89 ------------Di~~---~~s~~~i~~~l~~~ 106 (125)
|+++ +.+++++..|+.++
T Consensus 233 ~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL 265 (342)
T 1lnz_A 233 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQEL 265 (342)
T ss_dssp HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHH
T ss_pred HHHhccEEEEEEECCcccccChHHHHHHHHHHH
Confidence 8887 78899988888776
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.91 E-value=3.9e-10 Score=84.11 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=39.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCcccccccee----eEEEEeCCEEEEEEECCC--------cccccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLN----IGQIDINTVRLNFWDLGG--------QLELQS 84 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~G--------~~~~~~ 84 (125)
..+|+++|.+|||||||++++.+....... ++.|.+ +..+...+..+.+|||+| +++++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~--------~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 94 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVE--------DTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQ 94 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-------------------CEEEECTTCSSCCEEECCCC------CCHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccC--------CCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHH
Confidence 458999999999999999996543322221 233333 334444568899999999 665555
Q ss_pred ccc
Q psy9521 85 LWD 87 (125)
Q Consensus 85 ~~~ 87 (125)
.+.
T Consensus 95 ~~~ 97 (456)
T 4dcu_A 95 QAE 97 (456)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.91 E-value=5.5e-09 Score=81.62 Aligned_cols=91 Identities=18% Similarity=0.095 Sum_probs=56.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-Hhh--ccccc--cC-C-CCC------CccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKT--KFTKN--YK-G-MNP------SKITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~--~~~~~--~~-~-~~~------~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.+..+|+++|..|+|||||+++ +.. .+... .. + ... ....+|+......+..++..+++|||+|++.
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 4578899999999999999999 432 11100 00 0 000 0223566666666777789999999999988
Q ss_pred ccccccc------------cccCccCHHHHHHHHhh
Q psy9521 82 LQSLWDK------------DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 82 ~~~~~~~------------Di~~~~s~~~i~~~l~~ 105 (125)
|...+.. |..+..+++....|...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~ 125 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA 125 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH
Confidence 7665444 77777777777666543
No 169
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.91 E-value=9.7e-09 Score=72.02 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=22.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHH-hhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESA-KTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i-~~~~~ 42 (125)
...+|+++|.+|||||||++++ ...+.
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 5679999999999999999994 45543
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.90 E-value=3.4e-09 Score=86.43 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=41.6
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccccc-------cCCCCCCccccccceee----EEEEeCCEEEEEEECCCcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKN-------YKGMNPSKITTTVGLNI----GQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~-------~~~~~~~~~~~t~~~~~----~~~~~~~~~~~i~D~~G~~~~ 82 (125)
.++.++|+++|..++|||||++++.+..... +......+.+.+.|.++ ..+..++..+.+|||+|+++|
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 3577999999999999999999954321100 00000001112333332 244556689999999999988
Q ss_pred ccc
Q psy9521 83 QSL 85 (125)
Q Consensus 83 ~~~ 85 (125)
...
T Consensus 373 ~~~ 375 (1289)
T 3avx_A 373 VKN 375 (1289)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 171
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.89 E-value=1.9e-09 Score=79.93 Aligned_cols=66 Identities=14% Similarity=0.187 Sum_probs=42.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-HhhccccccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCccccccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQLELQSL 85 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~~~~~~ 85 (125)
...++|+++|..|+|||||+++ +...+.... .....|.......+...+ ..+.+|||+|++.+..+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-----~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l 99 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-----DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL 99 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC------------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-----CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch
Confidence 4678999999999999999999 444432110 011134444445566665 48999999999887655
No 172
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.85 E-value=8.5e-09 Score=82.11 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=57.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHH-Hhhc-cccc-cCC--CC----C--CccccccceeeEEEEeC----------------
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES-AKTK-FTKN-YKG--MN----P--SKITTTVGLNIGQIDIN---------------- 67 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~-i~~~-~~~~-~~~--~~----~--~~~~~t~~~~~~~~~~~---------------- 67 (125)
.+..+|+++|..++|||||+++ +... .... ..+ .. . .....|+......+..+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 4567899999999999999999 4431 1100 000 00 0 01113444333333222
Q ss_pred CEEEEEEECCCcccccccccc------------cccCccCHHHHHHHHhh
Q psy9521 68 TVRLNFWDLGGQLELQSLWDK------------DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 68 ~~~~~i~D~~G~~~~~~~~~~------------Di~~~~s~~~i~~~l~~ 105 (125)
++.+++|||+|+++|...+.. |..+..+++...-|...
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~ 146 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQA 146 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 588999999999998765554 88888888887666544
No 173
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.82 E-value=1.1e-08 Score=78.72 Aligned_cols=82 Identities=23% Similarity=0.265 Sum_probs=53.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEE----------------eCCEEEEEEECCCc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQID----------------INTVRLNFWDLGGQ 79 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~~~~i~D~~G~ 79 (125)
+..+|+++|+.++|||||++++.+....++. +..+.++++..+.... .....+++|||||+
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e---~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASRE---AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC-------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCcccc---CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCc
Confidence 4578999999999999999995443332221 1123355665543211 11236999999999
Q ss_pred ccccccccc------------cccC---ccCHHHHH
Q psy9521 80 LELQSLWDK------------DIRD---CMGVREVK 100 (125)
Q Consensus 80 ~~~~~~~~~------------Di~~---~~s~~~i~ 100 (125)
+.|..++.. |.++ +.+++.+.
T Consensus 81 e~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~ 116 (594)
T 1g7s_A 81 EAFTTLRKRGGALADLAILIVDINEGFKPQTQEALN 116 (594)
T ss_dssp SCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH
Confidence 999887765 7776 56666554
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.82 E-value=1.6e-09 Score=81.86 Aligned_cols=67 Identities=22% Similarity=0.280 Sum_probs=45.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHH-hhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcccccccccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESA-KTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK 88 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 88 (125)
+..+|+++|+.++|||||++++ ...+..... .. .|.......+..++..+.+|||||++.|..++..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~----~G--IT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA----GG--ITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB----CC--CCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccC----CC--eeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 4567999999999999999995 444433221 00 1211112234445678999999999999877665
No 175
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.81 E-value=5.7e-09 Score=75.94 Aligned_cols=59 Identities=27% Similarity=0.432 Sum_probs=38.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh-ccc-cccCCCCCCccccccceeeEEEEeCC-----------------EEEEEEECC
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT-KFT-KNYKGMNPSKITTTVGLNIGQIDINT-----------------VRLNFWDLG 77 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~-~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~ 77 (125)
.++|+++|.+|||||||++++.+ .+. .+++ .+|++.+...+..++ ..+++||++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p-------~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 74 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYP-------FCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIA 74 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------C-------CCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCC-------CceECceEEEEecCCcccceeeeeecccceeeeEEEEEECC
Confidence 36899999999999999999554 321 1221 123333333344433 579999999
Q ss_pred Ccccc
Q psy9521 78 GQLEL 82 (125)
Q Consensus 78 G~~~~ 82 (125)
|+.++
T Consensus 75 Gl~~~ 79 (363)
T 1jal_A 75 GLVAG 79 (363)
T ss_dssp SCCTT
T ss_pred CCccc
Confidence 99865
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.76 E-value=2.9e-08 Score=77.58 Aligned_cols=90 Identities=17% Similarity=0.111 Sum_probs=55.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh---hcccccc--C-C-CCCC------ccccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK---TKFTKNY--K-G-MNPS------KITTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~---~~~~~~~--~-~-~~~~------~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.+..+|+++|..|+|||||++++. +.+.... . + ...+ ....|+......+..++..+.+|||+|+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 456789999999999999999943 2221100 0 0 0000 122455555556677789999999999988
Q ss_pred ccccccc------------cccCccCHHHHHHHHh
Q psy9521 82 LQSLWDK------------DIRDCMGVREVKPIFN 104 (125)
Q Consensus 82 ~~~~~~~------------Di~~~~s~~~i~~~l~ 104 (125)
+...+.. |..+..++.....|..
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~ 122 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ 122 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH
Confidence 7654443 7777777776665544
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.73 E-value=6.2e-08 Score=73.64 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=40.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh--ccccc-----------cCCCCCCcccccccee----eEEEEeCCEEEEEEECC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT--KFTKN-----------YKGMNPSKITTTVGLN----IGQIDINTVRLNFWDLG 77 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~--~~~~~-----------~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~D~~ 77 (125)
++..+|+++|..|+|||||++++.. ..... ..-....+.+++.|.. ...+..++..+.+|||+
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3578899999999999999999432 11100 0000000111222322 23566678999999999
Q ss_pred Ccccccc
Q psy9521 78 GQLELQS 84 (125)
Q Consensus 78 G~~~~~~ 84 (125)
|++.|..
T Consensus 91 G~~df~~ 97 (529)
T 2h5e_A 91 GHEDFSE 97 (529)
T ss_dssp CSTTCCH
T ss_pred CChhHHH
Confidence 9988765
No 178
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.73 E-value=6.5e-09 Score=69.22 Aligned_cols=60 Identities=20% Similarity=0.177 Sum_probs=35.4
Q ss_pred hccCceEEEEEEeCCCCcHHHHHHHHhhc-cccccCCCCCCccccccceeeE--EEEeCCEEEEEEECCCcc
Q psy9521 12 MLRKDEFCVLILGLDNAGKTTYLESAKTK-FTKNYKGMNPSKITTTVGLNIG--QIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~GKTsl~~~i~~~-~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~D~~G~~ 80 (125)
+.-.+..+++++|++|||||||++++.+. +...+. |+.|.... .+..++ .+.+||++|+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~--------~~~G~~~~~~~~~~~~-~~~l~Dt~G~~ 83 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS--------KTPGRTQLINLFEVAD-GKRLVDLPGYG 83 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC---------------------CCEEEEEEET-TEEEEECCCCC
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc--------CCCccceeeEEEEecC-CEEEEECcCCc
Confidence 33457789999999999999999996543 233322 55554321 233333 57899999974
No 179
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.73 E-value=8e-08 Score=71.12 Aligned_cols=70 Identities=20% Similarity=0.208 Sum_probs=35.6
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEE--EeCC--EEEEEEECCCcccc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQI--DINT--VRLNFWDLGGQLEL 82 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~i~D~~G~~~~ 82 (125)
.+.-.++|+++|++|||||||++++.+ .++....+.......+|++.....+ ...+ ..+++||++|...+
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 345678899999999999999999654 3321111111111124444332221 2223 57999999998754
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.73 E-value=1.2e-08 Score=72.35 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=33.5
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhh--ccccccCCCCCCccccccceeeEEE--EeC--CEEEEEEECCCc-------
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKT--KFTKNYKGMNPSKITTTVGLNIGQI--DIN--TVRLNFWDLGGQ------- 79 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~--~~~~~~~~~~~~~~~~t~~~~~~~~--~~~--~~~~~i~D~~G~------- 79 (125)
.+.-.++|+++|++|||||||++++.+ .++.++.........+|+......+ +.. ...+++||++|+
T Consensus 14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 345678999999999999999999543 4444321000111123433322222 222 378999999998
Q ss_pred cccccccc
Q psy9521 80 LELQSLWD 87 (125)
Q Consensus 80 ~~~~~~~~ 87 (125)
++++.+..
T Consensus 94 e~~~~l~~ 101 (301)
T 2qnr_A 94 DCFKTIIS 101 (301)
T ss_dssp --CTTHHH
T ss_pred HHHHHHHH
Confidence 55555543
No 181
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.71 E-value=6.2e-08 Score=75.89 Aligned_cols=88 Identities=16% Similarity=-0.006 Sum_probs=53.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHH-h--hcccccc--C-C-CCCC------ccccccceeeEEEEeCC-------EEEEEE
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESA-K--TKFTKNY--K-G-MNPS------KITTTVGLNIGQIDINT-------VRLNFW 74 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i-~--~~~~~~~--~-~-~~~~------~~~~t~~~~~~~~~~~~-------~~~~i~ 74 (125)
.+..+|+++|..++|||||+.++ . +.+.... . + ...+ ....|+......+..++ +.+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45678999999999999999994 3 2221110 0 0 0000 11234444444455554 899999
Q ss_pred ECCCcccccccccc------------cccCccCHHHHHHH
Q psy9521 75 DLGGQLELQSLWDK------------DIRDCMGVREVKPI 102 (125)
Q Consensus 75 D~~G~~~~~~~~~~------------Di~~~~s~~~i~~~ 102 (125)
||+|+++|...+.. |.++....+...-|
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 99999987654443 66666555544434
No 182
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.70 E-value=5.3e-08 Score=69.03 Aligned_cols=60 Identities=23% Similarity=0.150 Sum_probs=39.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh-ccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT-KFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
+..+|+++|++|||||||++++.+ .+.... .....|.......+..++..+.+|||+|++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-----~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~ 67 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-----RKAQTTRHRIVGIHTEGAYQAIYVDTPGLH 67 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-----CCSSCCSSCEEEEEEETTEEEEEESSSSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccC-----CCCCcceeeEEEEEEECCeeEEEEECcCCC
Confidence 455799999999999999999543 332110 011123222223445567899999999987
No 183
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.70 E-value=4e-08 Score=75.64 Aligned_cols=90 Identities=16% Similarity=0.277 Sum_probs=43.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhh--ccccc-cCC--CCCCccccccceee----EEEEeC-----CEEEEEEECCCcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKT--KFTKN-YKG--MNPSKITTTVGLNI----GQIDIN-----TVRLNFWDLGGQL 80 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~--~~~~~-~~~--~~~~~~~~t~~~~~----~~~~~~-----~~~~~i~D~~G~~ 80 (125)
+-.+|+++|+.++|||||+.+ +.. ..... ... ....+.+.+.|.++ ..+... ++.+++|||+|++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 345799999999999999999 442 11110 000 00011112233332 123222 3789999999999
Q ss_pred cccccccc------------cccCccCHHHHHHHHhh
Q psy9521 81 ELQSLWDK------------DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 81 ~~~~~~~~------------Di~~~~s~~~i~~~l~~ 105 (125)
.|...+.. |..+..+++....|...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~ 119 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA 119 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH
Confidence 88654443 55555555555555443
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.69 E-value=6e-08 Score=71.34 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+||+++|.+|||||||++++.+
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~ 22 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATL 22 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 4799999999999999999654
No 185
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.65 E-value=1e-07 Score=73.35 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=46.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhh--ccccccCC---CCCCccccccceee----EEEEe---C--CEEEEEEECCCcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKT--KFTKNYKG---MNPSKITTTVGLNI----GQIDI---N--TVRLNFWDLGGQL 80 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~--~~~~~~~~---~~~~~~~~t~~~~~----~~~~~---~--~~~~~i~D~~G~~ 80 (125)
+-.+|+++|..++|||||+++ +.. .......+ ......+...|+++ ..+.. + ++.+++|||+|++
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 456799999999999999999 432 11110000 00000011122221 12222 2 2789999999999
Q ss_pred cccccccc------------cccCccCHHHHHHHHhh
Q psy9521 81 ELQSLWDK------------DIRDCMGVREVKPIFNK 105 (125)
Q Consensus 81 ~~~~~~~~------------Di~~~~s~~~i~~~l~~ 105 (125)
.|...+.. |..+..+++....|...
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a 121 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA 121 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH
Confidence 88654333 66666666666655543
No 186
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.60 E-value=3.3e-07 Score=71.36 Aligned_cols=74 Identities=20% Similarity=0.172 Sum_probs=45.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh-hccccccCC-----CCCCcc-------ccccceeeEEEEeCCEEEEEEECCCccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK-TKFTKNYKG-----MNPSKI-------TTTVGLNIGQIDINTVRLNFWDLGGQLE 81 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~-~~~~~~~~~-----~~~~~~-------~~t~~~~~~~~~~~~~~~~i~D~~G~~~ 81 (125)
.+..+++++|+.|+|||||++++. ........+ ...... ..|+......+...++.+++||++|+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 456689999999999999999954 222111101 000000 1233333334555679999999999998
Q ss_pred ccccccc
Q psy9521 82 LQSLWDK 88 (125)
Q Consensus 82 ~~~~~~~ 88 (125)
|...+..
T Consensus 87 f~~~~~~ 93 (665)
T 2dy1_A 87 FVGEIRG 93 (665)
T ss_dssp GHHHHHH
T ss_pred hHHHHHH
Confidence 7654433
No 187
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.56 E-value=2.4e-08 Score=69.62 Aligned_cols=56 Identities=25% Similarity=0.302 Sum_probs=34.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceee--EEEEeCCEEEEEEECCCcccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNI--GQIDINTVRLNFWDLGGQLEL 82 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~D~~G~~~~ 82 (125)
++++++|.+|||||||++++.+....... ++.|.+. ..+.. +..+.+|||+|....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~--------~~~g~T~~~~~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG--------AQPGITKGIQWFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------------CCSCEEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC--------CCCCCccceEEEEe-CCCEEEEECCCcccC
Confidence 68999999999999999996654332221 3333222 12222 346889999997643
No 188
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.55 E-value=2.7e-07 Score=61.88 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=21.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.++..+++++|.+|||||||++++.
T Consensus 27 ~~~~~~i~i~G~~g~GKTTl~~~l~ 51 (221)
T 2wsm_A 27 ESGTVAVNIMGAIGSGKTLLIERTI 51 (221)
T ss_dssp HHTCEEEEEEECTTSCHHHHHHHHH
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHH
Confidence 3456789999999999999999944
No 189
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.53 E-value=6.1e-08 Score=71.26 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=35.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeC-----------------CEEEEEEECC
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN-----------------TVRLNFWDLG 77 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~i~D~~ 77 (125)
+...+|.++|.+|||||||++++.+..... ......|+..+...+..+ ...+++||++
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~-----~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtp 94 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASA-----ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIA 94 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccc-----cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECC
Confidence 456889999999999999999965432110 001113344333344333 2359999999
Q ss_pred Ccccccc
Q psy9521 78 GQLELQS 84 (125)
Q Consensus 78 G~~~~~~ 84 (125)
|+.+...
T Consensus 95 Gl~~~as 101 (396)
T 2ohf_A 95 GLVKGAH 101 (396)
T ss_dssp C------
T ss_pred Ccccccc
Confidence 9986543
No 190
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.53 E-value=2e-07 Score=67.77 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=46.3
Q ss_pred cccceeeEEEEeCCEEEEEEECCCcccccccccc------------cccC----------ccCHHHHHHHHhhhcccccC
Q psy9521 55 TTVGLNIGQIDINTVRLNFWDLGGQLELQSLWDK------------DIRD----------CMGVREVKPIFNKNSAHLIG 112 (125)
Q Consensus 55 ~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~------------Di~~----------~~s~~~i~~~l~~~~~~~~~ 112 (125)
||+|++...+..+++.+++||++||++++.+|.. |+++ ..+|++...|++.+ .+...
T Consensus 187 ~T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i-~~~~~ 265 (362)
T 1zcb_A 187 PTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI-VNNRV 265 (362)
T ss_dssp CCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH-HTCGG
T ss_pred CccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH-hcchh
Confidence 5778887788888999999999999999999987 8887 78999999999887 22211
Q ss_pred CCCeEEEEeec
Q psy9521 113 RRDCMVMPVSA 123 (125)
Q Consensus 113 ~~~~~i~~~sA 123 (125)
..+.+++.+-.
T Consensus 266 ~~~~piILv~N 276 (362)
T 1zcb_A 266 FSNVSIILFLN 276 (362)
T ss_dssp GTTSEEEEEEE
T ss_pred hCCCCEEEEEE
Confidence 24456665543
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.51 E-value=1.8e-07 Score=71.38 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=21.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHH-Hhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLES-AKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~-i~~~~ 41 (125)
...+|+++|..|+|||||+++ +...+
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~ 90 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEV 90 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCcc
Confidence 457999999999999999999 44443
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.50 E-value=6e-07 Score=64.81 Aligned_cols=27 Identities=30% Similarity=0.393 Sum_probs=22.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHH-hhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESA-KTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i-~~~~~ 42 (125)
...+|+++|.+|||||||++++ ...+.
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 4568999999999999999995 44553
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.48 E-value=1e-06 Score=63.69 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhh-cc
Q psy9521 19 CVLILGLDNAGKTTYLESAKT-KF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~-~~ 41 (125)
+|+|+|++|||||||++++.+ .|
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCc
Confidence 799999999999999999554 44
No 194
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.45 E-value=2.4e-07 Score=65.19 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=34.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
...++++++|.+|||||||++++.+........ ....|.... .+.. +..+.++||||-.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~----~~g~T~~~~--~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGD----RPGITTSQQ--WVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC----------------C--CEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCC----CCCeeeeeE--EEEe-CCCEEEEECcCcC
Confidence 467899999999999999999966543222110 001222221 1222 2368899999974
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.45 E-value=3.7e-07 Score=66.73 Aligned_cols=57 Identities=25% Similarity=0.320 Sum_probs=44.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
..+|.++|.+|||||||++++.+... .+|+ ..|+......+..++.++++.|+||-.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~p-------ftT~~~~~g~~~~~~~~i~l~D~pGl~ 130 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESEAAEYE-------FTTLVTVPGVIRYKGAKIQMLDLPGII 130 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCCGGGTC-------SSCCCEEEEEEEETTEEEEEEECGGGC
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCcccCCC-------CceeeeeeEEEEeCCcEEEEEeCCCcc
Confidence 46899999999999999999765432 2222 256666666788899999999999974
No 196
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.43 E-value=1.3e-06 Score=68.44 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+..++|+++|.+|+|||||++++.+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999999544
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.41 E-value=3.2e-07 Score=66.90 Aligned_cols=62 Identities=26% Similarity=0.392 Sum_probs=38.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEE----------EE-------eCCEEEEEEECCC
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQ----------ID-------INTVRLNFWDLGG 78 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~----------~~-------~~~~~~~i~D~~G 78 (125)
++|+++|.+|||||||++++.+... .+++ .....|+++..... +. ..+..+++||++|
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p---~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpG 78 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYP---FATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAG 78 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCC---GGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCC---CceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCC
Confidence 4699999999999999999554321 1211 11223554432100 00 1246799999999
Q ss_pred cccc
Q psy9521 79 QLEL 82 (125)
Q Consensus 79 ~~~~ 82 (125)
+.+.
T Consensus 79 l~~~ 82 (368)
T 2dby_A 79 LVKG 82 (368)
T ss_dssp CCCC
T ss_pred cccc
Confidence 9765
No 198
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.29 E-value=1e-06 Score=62.22 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...+|+++|.+|||||||++++.+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g 46 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVG 46 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHC
Confidence 456899999999999999999543
No 199
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.28 E-value=2.3e-06 Score=61.81 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
++...|+++|.+|||||||++++..
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999643
No 200
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.27 E-value=1.6e-06 Score=63.75 Aligned_cols=25 Identities=24% Similarity=0.494 Sum_probs=22.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
++..++.++|++|||||||++.+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHC
Confidence 4567899999999999999999665
No 201
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.27 E-value=2.8e-06 Score=62.82 Aligned_cols=55 Identities=27% Similarity=0.454 Sum_probs=36.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc--cccCCCCCCccccccceeeEEEEeCC-EEEEEEECCCcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT--KNYKGMNPSKITTTVGLNIGQIDINT-VRLNFWDLGGQL 80 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~--~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~D~~G~~ 80 (125)
.++++|++|||||||++++.+..+ ..++ . .|...+...+..++ ..+.+||++|..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~---f----tTl~p~~G~V~~~~~~~~~l~DtpGli 216 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYP---F----TTLSPNLGVVEVSEEERFTLADIPGII 216 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCT---T----CSSCCEEEEEECSSSCEEEEEECCCCC
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcc---c----ceecceeeEEEecCcceEEEEeccccc
Confidence 378999999999999999765422 1111 1 22333333455554 789999999974
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.18 E-value=1.4e-06 Score=58.45 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=24.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHH-Hhhcccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLES-AKTKFTK 43 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~-i~~~~~~ 43 (125)
.++..+|+++|.+|||||||+++ +.+.+..
T Consensus 35 ~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 35 KHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred hCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34678999999999999999999 5554544
No 203
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.99 E-value=2.3e-05 Score=60.38 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=40.4
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhcccc-ccCCCCCCccccccceeeEEE---EeCCEEEEEEECCCccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTK-NYKGMNPSKITTTVGLNIGQI---DINTVRLNFWDLGGQLE 81 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~-~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~i~D~~G~~~ 81 (125)
..+.++|+++|.+|||||||++++.+.... ... ......|.++..... ...+..+.++||+|-..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~---~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLG---STVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCC---CSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccC---CCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456788999999999999999996554221 111 111123444322111 12457899999999753
No 204
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.89 E-value=3.6e-06 Score=59.57 Aligned_cols=64 Identities=13% Similarity=0.017 Sum_probs=50.6
Q ss_pred HHHHH-Hhhccc-cccCCCCCCccccccceeeEEEEe-CCEEEEEEECCCcccccccccc------------cccCcc-C
Q psy9521 32 TYLES-AKTKFT-KNYKGMNPSKITTTVGLNIGQIDI-NTVRLNFWDLGGQLELQSLWDK------------DIRDCM-G 95 (125)
Q Consensus 32 sl~~~-i~~~~~-~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~------------Di~~~~-s 95 (125)
+|+.+ +.+.|. .++. ||+|..+. +.. .+-++.+||+ |++++.+++. |++++. +
T Consensus 32 sl~~~~~~~~f~~~~~~--------pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s 100 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLK--------IYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETS 100 (301)
T ss_dssp CEEEEEECGGGTTTTCC--------CCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCC
T ss_pred cEEEEEEcccccccCCC--------CCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCC
Confidence 57777 788888 7777 99997665 222 1237899999 9999998887 999887 7
Q ss_pred HHHHHHHHhhh
Q psy9521 96 VREVKPIFNKN 106 (125)
Q Consensus 96 ~~~i~~~l~~~ 106 (125)
|+.+..|+.++
T Consensus 101 ~~~l~~~l~~~ 111 (301)
T 1u0l_A 101 TYIIDKFLVLA 111 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999765
No 205
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.73 E-value=3.3e-05 Score=56.18 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..+++++|.+|+|||||++.+.+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhh
Confidence 357999999999999999996544
No 206
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.60 E-value=4.6e-05 Score=53.19 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=21.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+++++++|++|+|||||++.+.+..
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999966543
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.58 E-value=8.5e-05 Score=54.01 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=20.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..+++++|.+|+|||||++.+.+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhh
Confidence 347999999999999999996544
No 208
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.48 E-value=6.6e-05 Score=48.94 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-++++|++|||||||++.+.+.+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999976544
No 209
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.45 E-value=7.7e-05 Score=49.40 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|+++|++|||||||++++...+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999965443
No 210
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.45 E-value=8.5e-05 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+++++|++|+|||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999986543
No 211
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.42 E-value=0.00041 Score=52.95 Aligned_cols=66 Identities=18% Similarity=0.161 Sum_probs=38.6
Q ss_pred EEEEEEeCCCCcHHHHHHH-Hh--hcc------cccc----CCCCCCccc----cccceeeEEEEeCCEEEEEEECCCcc
Q psy9521 18 FCVLILGLDNAGKTTYLES-AK--TKF------TKNY----KGMNPSKIT----TTVGLNIGQIDINTVRLNFWDLGGQL 80 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~-i~--~~~------~~~~----~~~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~ 80 (125)
=+|.++|..++|||||..+ +. +.. .... .-....+.+ -|+......+..+++.+++.||||+.
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 3599999999999999999 42 110 0000 000001111 22222233567788999999999998
Q ss_pred ccc
Q psy9521 81 ELQ 83 (125)
Q Consensus 81 ~~~ 83 (125)
.|.
T Consensus 112 DF~ 114 (548)
T 3vqt_A 112 DFS 114 (548)
T ss_dssp GCS
T ss_pred HHH
Confidence 773
No 212
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.40 E-value=0.00067 Score=50.33 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=22.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...++++++|++|+|||||++.+.+.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 345567999999999999999997654
No 213
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.37 E-value=0.0001 Score=48.83 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999965533
No 214
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.31 E-value=0.00013 Score=47.67 Aligned_cols=23 Identities=26% Similarity=0.496 Sum_probs=19.6
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++++|++|+|||||++.+.+..+
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999765443
No 215
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.31 E-value=0.00014 Score=48.58 Aligned_cols=24 Identities=8% Similarity=0.300 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-++++|++|||||||++.+.+.++
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 488999999999999999655443
No 216
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.30 E-value=0.00014 Score=49.18 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=20.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-++++|++|||||||++.+.+..+
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 488999999999999999765543
No 217
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.29 E-value=0.00015 Score=47.70 Aligned_cols=23 Identities=22% Similarity=0.301 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-++++|++|||||||++.+.+..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 48899999999999999976543
No 218
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.27 E-value=0.00017 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-++++|++||||||+++.+.+.++
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEEECcCCCCHHHHHHHHHhhCC
Confidence 488999999999999999765543
No 219
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.26 E-value=0.00018 Score=46.83 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-.++++|++|+||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999997654
No 220
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.26 E-value=0.00017 Score=47.99 Aligned_cols=23 Identities=22% Similarity=0.444 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999999976543
No 221
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.24 E-value=0.00037 Score=50.25 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
....|.++|.+|||||||++++.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999554
No 222
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.23 E-value=0.00068 Score=50.10 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=21.8
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
....+.++|++|+|||||++.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34579999999999999999976643
No 223
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.21 E-value=0.00017 Score=46.61 Aligned_cols=18 Identities=28% Similarity=0.645 Sum_probs=16.3
Q ss_pred EEEEEeCCCCcHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLES 36 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~ 36 (125)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999993
No 224
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.20 E-value=0.00028 Score=52.73 Aligned_cols=86 Identities=16% Similarity=0.165 Sum_probs=49.5
Q ss_pred hccCceEEEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEe----CCEEEEEEECCCcc--ccccc
Q psy9521 12 MLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDI----NTVRLNFWDLGGQL--ELQSL 85 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~--~~~~~ 85 (125)
++..++.+|+++|.+|+||||+.+++......... +|.+++...+.. ......+||..|++ +.+..
T Consensus 34 ~~~~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~--------~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~ 105 (469)
T 1bif_A 34 CMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGV--------PTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQ 105 (469)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHHHHHTTC--------CEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCCCCHHHHHHHHHHHHhccCC--------CceEEecchhhhhhccCCCcccccCCCCHHHHHHHHH
Confidence 34567889999999999999999996544332222 454443221100 11345688988873 23333
Q ss_pred c--------------cc------cccCccCHHHHHHHHhhh
Q psy9521 86 W--------------DK------DIRDCMGVREVKPIFNKN 106 (125)
Q Consensus 86 ~--------------~~------Di~~~~s~~~i~~~l~~~ 106 (125)
| .. |.++. +++....|++..
T Consensus 106 ~~~~~l~~~~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~ 145 (469)
T 1bif_A 106 CALAALNDVRKFLSEEGGHVAVFDATNT-TRERRAMIFNFG 145 (469)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEESCCC-SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHH
Confidence 3 01 66665 566666676654
No 225
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.20 E-value=0.00021 Score=48.05 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999976544
No 226
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.18 E-value=0.00023 Score=47.17 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-|+++|++||||||+.+++...+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999976544
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.17 E-value=0.00029 Score=46.88 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=22.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++...+.++|++|+|||||++.+.+...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999998665443
No 228
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00026 Score=45.15 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|++.|.+||||||+.+.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999997543
No 229
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=97.12 E-value=0.00035 Score=50.73 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.7
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
++.+||+++|.+|+|||||+++++
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHH
Confidence 568999999999999999999854
No 230
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.10 E-value=0.00033 Score=47.82 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998754
No 231
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.09 E-value=0.00033 Score=46.05 Aligned_cols=23 Identities=17% Similarity=0.158 Sum_probs=20.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++||||||+++.+.+..
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58999999999999999976554
No 232
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.08 E-value=0.00064 Score=43.52 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=25.3
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..+.+.+.....-.+++.|++|+|||++++.+....
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 344444444444568999999999999999855443
No 233
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.07 E-value=0.00049 Score=44.50 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=21.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+.-.++++|++|+|||+|++.+.+...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344689999999999999999665443
No 234
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.07 E-value=0.00039 Score=45.04 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|++.|.+||||||+.+.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999986543
No 235
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.06 E-value=0.00036 Score=44.67 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|+++|++||||||+.+.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999986543
No 236
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.06 E-value=0.0004 Score=47.00 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.05 E-value=0.00049 Score=45.54 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...+.++|+.|+|||||++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999986654
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.05 E-value=0.00038 Score=44.74 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
--.++++|+.|+|||||++.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458999999999999999976554
No 239
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.04 E-value=0.00036 Score=46.40 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
No 240
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.04 E-value=0.00058 Score=46.30 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=22.6
Q ss_pred HHHhhhccCceEEEEEEeCC-CCcHHHHHHH-Hh
Q psy9521 7 GFYKYMLRKDEFCVLILGLD-NAGKTTYLES-AK 38 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~-~~GKTsl~~~-i~ 38 (125)
+.+.++..+.+.++++.|++ .-=..+|+.+ +.
T Consensus 6 ~~~~s~~~~~~pr~amfgpgle~~~~~lv~~~m~ 39 (227)
T 3l82_B 6 SFLHSLIIQNEPRFAMFGPGLEELNTSLVLSLMS 39 (227)
T ss_dssp CSSSCCCCCCCCEEEEECGGGTSSSSCHHHHHHT
T ss_pred HHHHHhccCCCceEEEecCCcccccHHHHHHHhc
Confidence 44567778889999999975 2234478888 54
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.04 E-value=0.00038 Score=46.33 Aligned_cols=21 Identities=33% Similarity=0.414 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|+++|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999998643
No 242
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.03 E-value=0.00097 Score=50.47 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.5
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
++...|+++|.+||||||+++++.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999955
No 243
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.03 E-value=0.00041 Score=47.27 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHh
Q psy9521 18 FCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~ 38 (125)
-.++++|++||||||+++.+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999965
No 244
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.03 E-value=0.0004 Score=44.10 Aligned_cols=19 Identities=26% Similarity=0.580 Sum_probs=17.7
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i 37 (125)
-|+++|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999988
No 245
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.01 E-value=0.00039 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=19.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.-.++++|++|+||||+++.+.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999654
No 246
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.01 E-value=0.00042 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|+||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 378999999999999999654
No 247
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.01 E-value=0.00043 Score=44.53 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-|++.|.+||||||+.+.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999997543
No 248
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.01 E-value=0.00058 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=19.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...|++.|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45699999999999999998654
No 249
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.00 E-value=0.00059 Score=43.76 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|++.|.+||||||+.+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999654
No 250
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.00 E-value=0.00061 Score=44.29 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=22.1
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..+...|+++|.+|+||||+.+.+...
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 345667999999999999999986544
No 251
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.00 E-value=0.0011 Score=48.22 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|||||||++.+.+-
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999998764
No 252
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.00 E-value=0.00047 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.|++.|.+||||||+.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999997653
No 253
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.00 E-value=0.00041 Score=45.73 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..|+++|.+|+||||+.+.+.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35999999999999999986543
No 254
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.99 E-value=0.00049 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999997764
No 255
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.98 E-value=0.00058 Score=46.62 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=21.9
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
++..+|+++|.+||||||+.+++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999654
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.0005 Score=45.34 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-.|+++|++||||||+.+.+.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3699999999999999998654
No 257
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.97 E-value=0.00045 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.|+++|++||||+|...++...+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999966543
No 258
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.97 E-value=0.0005 Score=47.67 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998764
No 259
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.95 E-value=0.00059 Score=46.90 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999987643
No 260
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.95 E-value=0.00061 Score=46.64 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999977643
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.95 E-value=0.00054 Score=47.93 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
No 262
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.95 E-value=0.00053 Score=47.36 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.94 E-value=0.00057 Score=46.09 Aligned_cols=21 Identities=38% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|+.|+|||||++.+.+-
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999998764
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.94 E-value=0.00054 Score=46.80 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999977643
No 265
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.94 E-value=0.00064 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999977643
No 266
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.93 E-value=0.00063 Score=44.79 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=21.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..+...|++.|.+||||||+.+.+..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34566799999999999999998654
No 267
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.93 E-value=0.0006 Score=44.14 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|++.|.+||||||+.+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998654
No 268
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.92 E-value=0.00077 Score=43.60 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
...|+++|.+||||||+.+.+.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4569999999999999999865
No 269
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.92 E-value=0.00056 Score=45.68 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=20.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+...|+++|.+||||||+.+.+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998643
No 270
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.92 E-value=0.0007 Score=44.52 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..|++.|.+||||||+.+.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 569999999999999999976543
No 271
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.91 E-value=0.00075 Score=43.17 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=25.1
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.+.+.....-.+++.|++|+|||+++..+....
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34444444445568999999999999999865444
No 272
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.91 E-value=0.00061 Score=46.59 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999998764
No 273
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.90 E-value=0.00053 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-+++++|++|+|||||++.+.+.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56799999999999999999765443
No 274
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.89 E-value=0.00052 Score=45.37 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+++++|+.|+|||||++.+.+...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999665443
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.89 E-value=0.00064 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998764
No 276
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00062 Score=45.44 Aligned_cols=23 Identities=26% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..|.++|++||||||+.+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999996543
No 277
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.89 E-value=0.00063 Score=47.31 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 37899999999999999987643
No 278
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.88 E-value=0.00072 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999987643
No 279
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.88 E-value=0.0016 Score=47.42 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|||||||++.+.+-
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCcHHHHHHHHHHcC
Confidence 789999999999999998764
No 280
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.87 E-value=0.00063 Score=45.29 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998654
No 281
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.87 E-value=0.00067 Score=43.57 Aligned_cols=22 Identities=14% Similarity=0.379 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-.++++|++|+||||+.+.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4589999999999999998653
No 282
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.87 E-value=0.00075 Score=47.01 Aligned_cols=23 Identities=17% Similarity=0.358 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999977643
No 283
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.86 E-value=0.0007 Score=46.83 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 284
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.85 E-value=0.00069 Score=44.68 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=21.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.--|+++|++|+||||+.+.+.+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345569999999999999999865443
No 285
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.85 E-value=0.00067 Score=46.76 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 286
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.85 E-value=0.00068 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999997763
No 287
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.84 E-value=0.00073 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=19.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
...|+++|.+||||||+.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999865
No 288
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.84 E-value=0.00067 Score=45.76 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=17.6
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
-++++|++|+|||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37899999999999999854
No 289
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.84 E-value=0.00074 Score=46.74 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4889999999999999997754
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.84 E-value=0.00071 Score=47.02 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999997763
No 291
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.83 E-value=0.00077 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|+++|.+||||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998643
No 292
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.83 E-value=0.00088 Score=43.40 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=18.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHh
Q psy9521 18 FCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~ 38 (125)
..|++.|.+||||||+.+.+.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998854
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.83 E-value=0.00075 Score=44.95 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|+|||||++.+.+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999654
No 294
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.83 E-value=0.00077 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+-.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999987643
No 295
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00091 Score=43.98 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|+++|..||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 599999999999999998654
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.81 E-value=0.00066 Score=45.54 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999997665
No 297
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.81 E-value=0.00092 Score=43.82 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
...|++.|.+||||||+.+.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3469999999999999999976543
No 298
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.81 E-value=0.00074 Score=46.81 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+.-.++++|+.|+||||+++.+.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44469999999999999999965543
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.79 E-value=0.00083 Score=46.62 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998764
No 300
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.78 E-value=0.00086 Score=48.67 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|||||||++.+.+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCccHHHHHHHHhccc
Confidence 58999999999999999976543
No 301
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.78 E-value=0.00076 Score=47.81 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-.++++|++||||||++..+.+.+.
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4688999999999999999765444
No 302
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.77 E-value=0.00094 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=19.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...|++.|.+||||||+.+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998653
No 303
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.77 E-value=0.00094 Score=44.07 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...|++.|.+||||||+.+.+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999997643
No 304
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.77 E-value=0.00092 Score=44.68 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-..|+++|.+||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998654
No 305
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.76 E-value=0.00087 Score=47.26 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|||||||++.+.+..
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTC
T ss_pred eEEEECCCCCcHHHHHHHhcccc
Confidence 48899999999999999976543
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.75 E-value=0.0013 Score=43.36 Aligned_cols=25 Identities=32% Similarity=0.493 Sum_probs=21.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...|.++|.+|+||||+.+.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999997654
No 307
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00098 Score=46.29 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999997754
No 308
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.75 E-value=0.00087 Score=43.77 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-++++|.+|+|||||++++...+
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Confidence 48899999999999999955443
No 309
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.74 E-value=0.00098 Score=43.95 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...|++.|.+||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457999999999999999997643
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.74 E-value=0.00079 Score=43.31 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|+++|++|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999998654
No 311
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.73 E-value=0.00052 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=14.4
Q ss_pred EEEEEeCCCCcHHHHHHHHh-hcc
Q psy9521 19 CVLILGLDNAGKTTYLESAK-TKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~-~~~ 41 (125)
-++++|+.||||||+++.+. +..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEEECSCC----CHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 48899999999999999976 544
No 312
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.73 E-value=0.0046 Score=49.07 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=20.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.--+|+|+|..++|||||++.+.+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g 73 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVG 73 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 445899999999999999999544
No 313
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.72 E-value=0.00095 Score=43.08 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|+++|.+|+||||+.+.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 3589999999999999998653
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.71 E-value=0.0011 Score=46.42 Aligned_cols=26 Identities=19% Similarity=0.185 Sum_probs=21.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+..-|++.|++||||||+...+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999965443
No 315
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.71 E-value=0.001 Score=47.25 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+.=.++++|++|+|||||++.+.+-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 3346899999999999999996543
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.0005 Score=44.76 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|++|+|||||++.+.+.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999655443
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.71 E-value=0.0013 Score=46.72 Aligned_cols=28 Identities=18% Similarity=0.185 Sum_probs=23.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
++..-+.++|++|||||||++.+.+...
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4566799999999999999999765443
No 318
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.70 E-value=0.0004 Score=45.94 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-|++.|.+||||||+++.+...+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999976544
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.69 E-value=0.001 Score=44.72 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 320
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.69 E-value=0.00061 Score=52.87 Aligned_cols=66 Identities=23% Similarity=0.310 Sum_probs=39.0
Q ss_pred EEEEEeCCCCcHHHHHHH-Hh--hccccc--cC-C---CCCCccc----cccceeeEEEEeCCEEEEEEECCCcccccc
Q psy9521 19 CVLILGLDNAGKTTYLES-AK--TKFTKN--YK-G---MNPSKIT----TTVGLNIGQIDINTVRLNFWDLGGQLELQS 84 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~-i~--~~~~~~--~~-~---~~~~~~~----~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 84 (125)
+|.++|..++|||||..+ +. +..... .. + ....+.+ -|+......+..++..+++.||||+..|..
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 489999999999999999 53 221111 00 0 0000111 122222224556788999999999987743
No 321
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.68 E-value=0.0015 Score=42.94 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.+...|++.|.+||||||+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 344569999999999999998864
No 322
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.68 E-value=0.0011 Score=44.38 Aligned_cols=22 Identities=41% Similarity=0.413 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|+++|.+||||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998654
No 323
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.68 E-value=0.0014 Score=47.40 Aligned_cols=22 Identities=36% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++|||||||++.+.+-
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999998764
No 324
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.67 E-value=0.0011 Score=48.55 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHcC
Confidence 3789999999999999998764
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.67 E-value=0.0011 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-|++.|.+||||||+.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999976554
No 326
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.66 E-value=0.0012 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999977643
No 327
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.66 E-value=0.0011 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.378 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 3789999999999999998764
No 328
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.66 E-value=0.001 Score=46.97 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
.++++|++|||||||++.+.
T Consensus 167 i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999965
No 329
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.66 E-value=0.00097 Score=47.20 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.--++++|+.||||||++..+.+.+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999765544
No 330
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.66 E-value=0.0011 Score=48.17 Aligned_cols=22 Identities=36% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 3789999999999999997764
No 331
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.65 E-value=0.0012 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3789999999999999997754
No 332
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.65 E-value=0.0015 Score=45.95 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=23.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++...|.++|++|||||||++.+.+.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34667899999999999999998765554
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.65 E-value=0.0018 Score=41.88 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...|++.|.+||||||+.+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999998643
No 334
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.65 E-value=0.0013 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=18.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 335
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.65 E-value=0.0011 Score=44.79 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
|+++|++||||+|...++...+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6678999999999999876544
No 336
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.64 E-value=0.00089 Score=47.56 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=19.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58999999999999999976543
No 337
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.63 E-value=0.0016 Score=42.95 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=19.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+.|.++|..||||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999754
No 338
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.63 E-value=0.0025 Score=45.55 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=22.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
++.+-+.++|++|||||||++.+.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 355679999999999999999876443
No 339
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.63 E-value=0.0019 Score=46.34 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.0
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.+-..+.++|++|+|||||++.+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456679999999999999999964
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.63 E-value=0.0014 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|++.|.+||||||+.+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999988654
No 341
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.63 E-value=0.0012 Score=48.15 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 3789999999999999997754
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.62 E-value=0.0018 Score=45.02 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|+|||+|++.+.+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999996543
No 343
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.61 E-value=0.0013 Score=44.82 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|+|||+|++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999996543
No 344
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.61 E-value=0.0011 Score=47.48 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=22.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+.--++++|++||||||++..+.+.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455699999999999999999665443
No 345
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=42.39 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...|+++|.+||||||+.+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456999999999999999986543
No 346
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.59 E-value=0.00047 Score=49.04 Aligned_cols=24 Identities=17% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-.++++|++|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 368999999999999999976543
No 347
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.59 E-value=0.002 Score=42.50 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+...+.++|.+|+||||+++.+.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999998654
No 348
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.58 E-value=0.0023 Score=42.63 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.7
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..-.+++.|++|+|||+++..+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999986543
No 349
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.58 E-value=0.0013 Score=45.20 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|+|||||...+...
T Consensus 4 i~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhc
Confidence 789999999999999986543
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.58 E-value=0.0013 Score=47.78 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-+.++|++|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 3789999999999999997754
No 351
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.58 E-value=0.0018 Score=44.04 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=21.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+...|.++|+.|+|||||++.+.+.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4456999999999999999997653
No 352
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.57 E-value=0.0011 Score=45.42 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=22.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+...|+++|.+|+||||+.+.+...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 345779999999999999999965443
No 353
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.57 E-value=0.0025 Score=39.91 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
....|++.|++|+|||++.+.+...
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4456999999999999999997654
No 354
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.55 E-value=0.0016 Score=43.95 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+...|+++|.+|+||||+.+.+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998654
No 355
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.55 E-value=0.00098 Score=48.16 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 4789999999999999998764
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.54 E-value=0.0016 Score=47.13 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-.++++|+.|+|||||++.+.+..+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3599999999999999999765443
No 357
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.54 E-value=0.0022 Score=41.91 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=18.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+++.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999998544
No 358
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.0021 Score=46.59 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=20.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+.=.++++|+.|+||||+++.+.+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 33379999999999999999855433
No 359
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.52 E-value=0.0016 Score=41.52 Aligned_cols=21 Identities=19% Similarity=0.252 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.|++.|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998654
No 360
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.0023 Score=45.36 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=17.9
Q ss_pred hccCceEEEEEEeCCCC-cHHHHHHH-Hh
Q psy9521 12 MLRKDEFCVLILGLDNA-GKTTYLES-AK 38 (125)
Q Consensus 12 ~~~~~~~ki~v~G~~~~-GKTsl~~~-i~ 38 (125)
+..+.+.|+++.|++=- =..+|+.+ +.
T Consensus 96 l~~~~~pr~amFGpGlE~~~~~lv~~lm~ 124 (312)
T 3l2o_B 96 LIIQNEPRFAMFGPGLEELNTSLVLSLMS 124 (312)
T ss_dssp CCCCCCCEEEEECTHHHHSSSCHHHHHTT
T ss_pred hhcCCCceEEEECCCcccccHHHHHHHHc
Confidence 46678899999997521 12357777 44
No 361
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.51 E-value=0.0016 Score=47.77 Aligned_cols=22 Identities=32% Similarity=0.333 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|++|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4889999999999999997653
No 362
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.51 E-value=0.0019 Score=46.25 Aligned_cols=24 Identities=33% Similarity=0.473 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|+.|+|||||++.+.+..+
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 599999999999999999765443
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.51 E-value=0.0018 Score=41.97 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.|++.|.+||||||+.+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999976543
No 364
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.51 E-value=0.0012 Score=44.49 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=21.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
++-.-|++.|..|+||||+++.+.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34456999999999999999996543
No 365
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0025 Score=41.57 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+...|++.|..||||||+.+.+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998654
No 366
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.49 E-value=0.004 Score=46.46 Aligned_cols=23 Identities=17% Similarity=0.210 Sum_probs=19.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
+-.-|.|+|+.++|||+|++++-
T Consensus 66 ~v~vVsV~G~~~~GKStLLN~ll 88 (447)
T 3q5d_A 66 EVVAVSVAGAFRKGKSFLMDFML 88 (447)
T ss_dssp BEEEEEEEESTTSSHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHh
Confidence 44558899999999999999953
No 367
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.49 E-value=0.0023 Score=43.39 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=22.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+..-|++.|.+||||||+++++.+.+.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 556799999999999999999765543
No 368
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.47 E-value=0.0025 Score=42.37 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...|++.|.+||||||+.+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999753
No 369
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.46 E-value=0.0012 Score=41.80 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.++++|++|+|||+|++.+.+...
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999665443
No 370
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.46 E-value=0.0025 Score=45.02 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=21.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+...+.++|+.|+|||||++.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34567999999999999999986653
No 371
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.46 E-value=0.002 Score=41.52 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=18.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-.+++|+.|+|||||+..+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 468999999999999998653
No 372
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.0025 Score=43.95 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=21.1
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...-.+++.|++|+|||++++.+.+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34456999999999999999996543
No 373
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0016 Score=47.29 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=21.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.--++++|+.||||||++..+.+.+.
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 34689999999999999999765544
No 374
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.45 E-value=0.0018 Score=42.99 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
-++++|++|+|||||+..+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37889999999999999954
No 375
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.44 E-value=0.0019 Score=44.68 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
++++|++|+|||+|++.+.+.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHH
Confidence 999999999999999996543
No 376
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.44 E-value=0.0019 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=19.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..|+++|.+||||||+.+.+...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 45999999999999999986543
No 377
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.43 E-value=0.0019 Score=42.08 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=19.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-+.++|.+|+|||||+.++...+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48899999999999999955443
No 378
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.43 E-value=0.0013 Score=42.42 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=15.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..|++.|.+||||||+.+.+...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999997543
No 379
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.40 E-value=0.007 Score=47.51 Aligned_cols=18 Identities=39% Similarity=0.274 Sum_probs=17.2
Q ss_pred EEEEEeCCCCcHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLES 36 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~ 36 (125)
+|+++|..++|||||..+
T Consensus 15 Ni~IiaHvd~GKTTL~d~ 32 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTER 32 (709)
T ss_dssp EEEEECCSSSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 499999999999999999
No 380
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.39 E-value=0.0021 Score=41.56 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.|+++|.+||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999988654
No 381
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.39 E-value=0.002 Score=45.95 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+++.|++|+|||||++.+.+.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999996554
No 382
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.38 E-value=0.0021 Score=43.86 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=20.1
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.-.+++.|++|+|||++++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 335999999999999999996543
No 383
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.003 Score=41.41 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-.+++.|++|+|||+|+..+.+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 569999999999999999865444
No 384
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.36 E-value=0.0032 Score=40.54 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...|+++|.+|+||||+.+.+.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999997654
No 385
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.34 E-value=0.0022 Score=42.32 Aligned_cols=23 Identities=22% Similarity=0.254 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-+++.|++|+|||++++.+....
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999865433
No 386
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.33 E-value=0.0032 Score=41.77 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=21.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+..-|+++|.+|+||||+.+.+.+.+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999876544
No 387
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.32 E-value=0.0024 Score=43.62 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=20.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+.+.|++.|++|+||||+.+.+..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998653
No 388
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.32 E-value=0.0063 Score=41.79 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.9
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
......+++.|++|+|||+++..+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 45667799999999999999999654
No 389
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.31 E-value=0.0021 Score=48.61 Aligned_cols=26 Identities=31% Similarity=0.649 Sum_probs=21.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.--++++|++|||||||+..+.+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 44689999999999999999765443
No 390
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.30 E-value=0.0026 Score=44.38 Aligned_cols=22 Identities=14% Similarity=0.377 Sum_probs=18.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3889999999999999985543
No 391
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.29 E-value=0.0028 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
...|.++|+.||||||+++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999965
No 392
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.27 E-value=0.0034 Score=42.85 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=21.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.+.|.+.|.+||||||+.+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34577999999999999999987543
No 393
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.27 E-value=0.0045 Score=45.77 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=21.6
Q ss_pred ccCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 13 LRKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 13 ~~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+..+.=-++++|+.|+||||+++.+.+.
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 3334445999999999999999995543
No 394
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.25 E-value=0.0036 Score=42.58 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
++...+++.|.+||||||+++++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHH
Confidence 355779999999999999999954
No 395
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.24 E-value=0.0017 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEeCCCCcHHHHHHHHhhcc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~ 41 (125)
++++|++|+|||||++.+.+..
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC
T ss_pred EEEECCCCChHHHHHHHHhCCC
Confidence 9999999999999999977654
No 396
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.23 E-value=0.0028 Score=41.82 Aligned_cols=21 Identities=24% Similarity=0.184 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|+|||+|+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999543
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.23 E-value=0.0037 Score=45.41 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+.-.++++|+.|+||||+++.+.+...
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344699999999999999999655433
No 398
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.20 E-value=0.003 Score=42.33 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-++++|++|+|||+|+..+..
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999544
No 399
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.19 E-value=0.0044 Score=43.48 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..-.+++.|++|+|||++++.+.+.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHHHHHHH
Confidence 3446999999999999999996543
No 400
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.19 E-value=0.0035 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+||||+++.+.+..
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 39999999999999999966543
No 401
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.18 E-value=0.0035 Score=47.69 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|+.|+|||||++.+.+...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 489999999999999999877543
No 402
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.003 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.++++|+.|+|||||++.+.+-
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5999999999999999996653
No 403
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.17 E-value=0.0033 Score=40.01 Aligned_cols=21 Identities=14% Similarity=0.396 Sum_probs=18.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.|++.|.+||||||+.+.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998654
No 404
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.16 E-value=0.0038 Score=47.83 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
++.++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 58999999999999999976543
No 405
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.0048 Score=45.86 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.4
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+|..+.-+..-.|++.|++|+|||+|++.+.+.
T Consensus 205 e~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 205 DKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 3444444445567999999999999999996543
No 406
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.16 E-value=0.0043 Score=46.33 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+...+.....-.++++|++|+|||++++.+....
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34444444455578999999999999999865443
No 407
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.16 E-value=0.0037 Score=45.04 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-=++.++|+.|+|||||++.+.+.
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999986554
No 408
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.15 E-value=0.0053 Score=43.98 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.2
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+-..++++|.+|+|||||++.+.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4567799999999999999999643
No 409
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.12 E-value=0.0033 Score=43.68 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.-.+++.|++|+|||++++.+.+.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 456999999999999999996543
No 410
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.11 E-value=0.0035 Score=42.53 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.-.+++.|++|+|||++++.+.+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999998654
No 411
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.09 E-value=0.0029 Score=44.91 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=17.6
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
++++|..|+|||||++.+.+
T Consensus 7 ~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHh
Confidence 67889999999999999554
No 412
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.0055 Score=45.58 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=25.3
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+|..+--+..-.|++.|++|+|||+|++.+.+
T Consensus 205 ~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 205 EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHH
Confidence 345555444556799999999999999999654
No 413
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.08 E-value=0.0057 Score=41.82 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=20.3
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..-+++.|++|+|||++++.+...
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHh
Confidence 356999999999999999997644
No 414
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.07 E-value=0.004 Score=43.58 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=20.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...-+++.|++|+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4456788899999999999986543
No 415
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.07 E-value=0.0038 Score=44.61 Aligned_cols=25 Identities=24% Similarity=0.246 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTK 43 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~ 43 (125)
-|+++|++|||||+|...+...+..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~ 29 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNG 29 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCcc
Confidence 4789999999999999997655543
No 416
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.07 E-value=0.005 Score=42.86 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|++.|.+||||||+.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999654
No 417
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.06 E-value=0.0057 Score=42.61 Aligned_cols=24 Identities=17% Similarity=0.374 Sum_probs=20.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
.+...|++.|.+||||||+.+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345779999999999999999864
No 418
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.0058 Score=45.33 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=24.6
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|..+--...--+++.|++|+|||+|++.+.+
T Consensus 196 ~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp HHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHH
T ss_pred HHHHhCCCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 344444444455699999999999999999654
No 419
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.02 E-value=0.0042 Score=47.56 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|+.|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999976544
No 420
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.02 E-value=0.0046 Score=45.94 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=20.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+-=++.++|++|+|||||++.+.+.
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3346899999999999999986553
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.02 E-value=0.0035 Score=43.01 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=21.7
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
+...|++.|..||||||+++.+...+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 44679999999999999999976554
No 422
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.01 E-value=0.0061 Score=42.42 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=20.7
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.-.+++.|++|+|||++++.+.+..
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3569999999999999999865443
No 423
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.00 E-value=0.0044 Score=44.08 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.--+++.|++|+|||+|++.+.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3459999999999999999965433
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0045 Score=42.63 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-.|+++|.+|+||||+.+.+.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999998653
No 425
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.97 E-value=0.0043 Score=43.74 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-+++.|++|+|||+|++.+.+..
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 49999999999999999965443
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.97 E-value=0.0046 Score=39.10 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=16.8
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
.+++|+.|+|||+++..+.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999999999854
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.96 E-value=0.0043 Score=44.24 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-|+++|++|||||+|...+...+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3488999999999999999765554
No 428
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0046 Score=47.10 Aligned_cols=27 Identities=26% Similarity=0.341 Sum_probs=22.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+-=-+.++|+.|+|||||++.+.+...
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 334588999999999999999876544
No 429
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.95 E-value=0.005 Score=45.33 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=20.4
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+..-|+++|.+|+||||+.+++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3455889999999999999996543
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.94 E-value=0.0062 Score=43.84 Aligned_cols=25 Identities=16% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-|+++|+.|||||+|...+...+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3589999999999999999776554
No 431
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.93 E-value=0.0046 Score=46.57 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=19.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.++|+.|+|||||++.+.+-
T Consensus 31 ~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999986653
No 432
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.92 E-value=0.012 Score=42.78 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=20.7
Q ss_pred cCceEEEEEEeCCCCcHHHHHHHHh
Q psy9521 14 RKDEFCVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 14 ~~~~~ki~v~G~~~~GKTsl~~~i~ 38 (125)
......|+++|.+|+||||+...+.
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la 45 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELC 45 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHH
Confidence 3455679999999999999998644
No 433
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.92 E-value=0.005 Score=44.03 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=19.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+++.|++|+|||++++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 59999999999999999865443
No 434
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.91 E-value=0.0052 Score=41.18 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.6
Q ss_pred EEEEEeCCCCcHHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLESA 37 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i 37 (125)
-++++|++|+|||+|+.++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~ 43 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQF 43 (247)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3789999999999998873
No 435
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.0049 Score=43.99 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+.+.+...+.-.+++.|++|+|||++++.+...
T Consensus 35 ~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 35 PIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp HHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444556667999999999999999995433
No 436
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.89 E-value=0.0041 Score=47.78 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 58999999999999999977543
No 437
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.0053 Score=47.47 Aligned_cols=24 Identities=25% Similarity=0.309 Sum_probs=20.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|+.|+|||||++.+.+...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 489999999999999999876543
No 438
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.88 E-value=0.0061 Score=42.44 Aligned_cols=25 Identities=20% Similarity=0.145 Sum_probs=20.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3445699999999999999987543
No 439
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.87 E-value=0.0054 Score=42.51 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=19.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998654
No 440
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.0061 Score=44.92 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=24.9
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+|..+--+..-.+++.|++|+|||.|.+.+.+
T Consensus 172 e~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 172 ELFESLGIAQPKGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp HHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHH
T ss_pred HHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHH
Confidence 345554444455699999999999999999654
No 441
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.86 E-value=0.0054 Score=42.44 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=17.6
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
-++++|++|+|||||+..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999854
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.85 E-value=0.0059 Score=41.19 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=20.8
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+...|.++|..|+||||+.+.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3455799999999999999998654
No 443
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.84 E-value=0.0046 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.++++|++|+|||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999976543
No 444
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.84 E-value=0.0054 Score=43.89 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..|+++|++|||||+|...+...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 358999999999999999865443
No 445
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.83 E-value=0.0054 Score=43.20 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-.++++|++|+||||++..+...+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999998654443
No 446
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.82 E-value=0.0042 Score=42.19 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=18.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+-.-|++.|.+||||||+++.+...+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345699999999999999999765443
No 447
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.82 E-value=0.0051 Score=43.61 Aligned_cols=26 Identities=27% Similarity=0.561 Sum_probs=20.9
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.--++++|++|+||||++..+...+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~ 129 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFV 129 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHH
Confidence 34588999999999999998665443
No 448
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.81 E-value=0.0037 Score=47.88 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|++|+|||||++.+.+-.
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 58899999999999999876543
No 449
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.80 E-value=0.0064 Score=46.97 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|+.|+|||||++.+.+...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 488999999999999999876543
No 450
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.80 E-value=0.0058 Score=44.04 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.-|+++|++|||||||...+...+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 358999999999999999966544
No 451
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.79 E-value=0.0083 Score=40.55 Aligned_cols=24 Identities=21% Similarity=0.267 Sum_probs=20.3
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..|++.|..|+||||+++.+...+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHc
Confidence 458999999999999999976544
No 452
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.79 E-value=0.0058 Score=44.60 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=20.5
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
+.-.++++|++|+|||||++.+.+.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3346899999999999999986543
No 453
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.78 E-value=0.0086 Score=42.31 Aligned_cols=21 Identities=24% Similarity=0.389 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhhc
Q psy9521 20 VLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~ 40 (125)
+++.|++|+|||++++.+.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999985443
No 454
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.74 E-value=0.0049 Score=43.73 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=18.4
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 99999999999999998655
No 455
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.74 E-value=0.0037 Score=39.05 Aligned_cols=24 Identities=13% Similarity=-0.029 Sum_probs=20.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
....|++.|++|+|||++.+.+..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCCcEEEECCCCccHHHHHHHHHH
Confidence 344599999999999999998754
No 456
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.71 E-value=0.0067 Score=40.64 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=19.0
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..|+++|++|+|||+|...+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999543
No 457
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.69 E-value=0.0067 Score=42.61 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.8
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
-+++.|+.|+|||+|+..+.
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~ 52 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFL 52 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCcCCHHHHHHHHH
Confidence 58899999999999999853
No 458
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.69 E-value=0.0068 Score=39.62 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.|.+.|..|+||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998654
No 459
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.69 E-value=0.0078 Score=42.92 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-.+++.|++|+|||++++.+....
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999965443
No 460
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.68 E-value=0.0054 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|++|+|||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999876543
No 461
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.67 E-value=0.007 Score=42.55 Aligned_cols=20 Identities=30% Similarity=0.566 Sum_probs=17.9
Q ss_pred EEEEEeCCCCcHHHHHHHHh
Q psy9521 19 CVLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~ 38 (125)
-+++.|+.|+|||+|++.+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~ 51 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGI 51 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 58899999999999999854
No 462
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.66 E-value=0.0059 Score=43.50 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=20.2
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
..-.+++.|++|+|||++++.+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3346999999999999999985443
No 463
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.64 E-value=0.0091 Score=47.04 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=26.4
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..+...+..+..-.+++.|++|+|||++++.+....
T Consensus 190 ~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 190 QRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp HHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 344555544555679999999999999999865443
No 464
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.64 E-value=0.0067 Score=43.04 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=19.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-.+++.|++|+|||+|++.+.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 46999999999999999996543
No 465
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.63 E-value=0.01 Score=42.15 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=18.0
Q ss_pred EEEEeCCCCcHHHHHHHHhh
Q psy9521 20 VLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~ 39 (125)
+++.|++|+|||+++..+.+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999998544
No 466
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.62 E-value=0.012 Score=46.32 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=26.8
Q ss_pred HHHHhhhccCceEEEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 6 SGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 6 ~~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
..+.+.+..+..-.++++|++|+|||++++.+....
T Consensus 196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 344555555566679999999999999999865443
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.62 E-value=0.0075 Score=40.46 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=20.7
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-|++.|.+|+||||++..+...+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999765443
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.60 E-value=0.009 Score=45.47 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.5
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|+.|+|||||++.+.+...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999876543
No 469
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.60 E-value=0.0076 Score=43.60 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.8
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
.+++|+.|+|||||+..+.
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999854
No 470
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.0079 Score=45.82 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
.+.++|+.|+|||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999987643
No 471
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.58 E-value=0.012 Score=41.37 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.0
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
....+++.|++|+|||++++.+...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHh
Confidence 4556999999999999999997653
No 472
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.58 E-value=0.0075 Score=42.60 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-.+++.|++|+|||++++.+...
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999996543
No 473
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.011 Score=43.97 Aligned_cols=32 Identities=25% Similarity=0.309 Sum_probs=24.5
Q ss_pred HHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 8 ~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
+|..+--...--|++.|++|+|||+|++.+.+
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVAN 238 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHH
Confidence 44444444555799999999999999999654
No 474
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.57 E-value=0.0075 Score=42.63 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=19.8
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
...+++.|++|+|||++++.+..
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 45699999999999999998654
No 475
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.016 Score=41.38 Aligned_cols=22 Identities=36% Similarity=0.427 Sum_probs=19.1
Q ss_pred EEEEEEeCCCCcHHHHHHHHhh
Q psy9521 18 FCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
--+++.|++|+|||++++.+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~ 67 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFN 67 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998544
No 476
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.55 E-value=0.0039 Score=42.63 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.9
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
.+++.|++|+|||++++.+.+.
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3899999999999999996543
No 477
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.51 E-value=0.01 Score=45.92 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.+.++|+.|+|||||++.+.+...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999876543
No 478
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.01 Score=44.51 Aligned_cols=33 Identities=15% Similarity=0.146 Sum_probs=25.1
Q ss_pred HHHhhhccCceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 7 GFYKYMLRKDEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 7 ~~~~~~~~~~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+|..+.-+..-.|++.|++|+|||+|.+.+.+
T Consensus 233 e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~ 265 (467)
T 4b4t_H 233 ERFATLGIDPPKGILLYGPPGTGKTLCARAVAN 265 (467)
T ss_dssp HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh
Confidence 345555444566799999999999999998654
No 479
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.50 E-value=0.0091 Score=40.71 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=20.1
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...++.++|.+||||||+..++...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999986543
No 480
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.46 E-value=0.013 Score=39.89 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.3
Q ss_pred CceEEEEEEeCCCCcHHHHHHH
Q psy9521 15 KDEFCVLILGLDNAGKTTYLES 36 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~ 36 (125)
+-+++|++.|.+|||||++...
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHH
Confidence 4578999999999999999665
No 481
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.43 E-value=0.0094 Score=42.90 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.3
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
-+.++|++|+|||+|+..+..
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 488999999999999999544
No 482
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.42 E-value=0.011 Score=43.52 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=20.1
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-|+++|++|||||+|...+...+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 478999999999999999665554
No 483
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.41 E-value=0.0096 Score=42.87 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999986543
No 484
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.41 E-value=0.0086 Score=50.10 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEEEeCCCCcHHHHHHHHhhccccccCCCCCCccccccceeeEEEEeCCEEE
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRL 71 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 71 (125)
|+.++|++|+|||||++-+.+-+. |+-| .+.++|+.+
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~~------------p~~G----~I~iDG~di 1143 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFYD------------TLGG----EIFIDGSEI 1143 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSSC------------CSSS----EEEETTEET
T ss_pred EEEEECCCCChHHHHHHHHhcCcc------------CCCC----EEEECCEEh
No 485
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.40 E-value=0.01 Score=40.54 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-|++.|.+|+||||++..+...+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999765443
No 486
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.40 E-value=0.0089 Score=45.51 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcHHHHHHHHhhc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-++++|++|+|||+|++.+.+.
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999996543
No 487
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.39 E-value=0.0099 Score=42.64 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.2
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...+++.|++|+|||++.+.+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 446999999999999999986543
No 488
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.38 E-value=0.0098 Score=44.96 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=16.8
Q ss_pred EEEEEeCCCCcHHHHHHH
Q psy9521 19 CVLILGLDNAGKTTYLES 36 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~ 36 (125)
-++++|++|+|||||++.
T Consensus 41 ~~~l~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQ 58 (525)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 388999999999999998
No 489
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.35 E-value=0.015 Score=43.62 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.6
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
--+++.|++|+|||+|++.+.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999996543
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.34 E-value=0.0099 Score=44.03 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=19.6
Q ss_pred EEEEEeCCCCcHHHHHHHHhhcc
Q psy9521 19 CVLILGLDNAGKTTYLESAKTKF 41 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~~~ 41 (125)
-+++.|++|+|||+|++.+.+..
T Consensus 132 ~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 132 PLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999865543
No 491
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.34 E-value=0.01 Score=42.69 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.5
Q ss_pred EEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 18 FCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 18 ~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
-.+++.|++|+|||+|++.+...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999999986543
No 492
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.33 E-value=0.0085 Score=40.35 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=17.8
Q ss_pred EEEEEeCCCCcHHHHHHHHhh
Q psy9521 19 CVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 19 ki~v~G~~~~GKTsl~~~i~~ 39 (125)
.+++.|++|+|||+++..+.+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999887543
No 493
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.32 E-value=0.005 Score=43.20 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.6
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..-|.+.|.+||||||+.+.+..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34599999999999999998654
No 494
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.31 E-value=0.01 Score=42.61 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=20.3
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhh
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKT 39 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~ 39 (125)
..-.+++.|++|+|||++++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445699999999999999999654
No 495
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.011 Score=45.63 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=19.8
Q ss_pred EEEEeCCCCcHHHHHHHHhhccc
Q psy9521 20 VLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
+.++|+.|+|||||++.+.+-..
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 68999999999999999876443
No 496
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.30 E-value=0.011 Score=39.21 Aligned_cols=19 Identities=32% Similarity=0.614 Sum_probs=16.7
Q ss_pred EEEEeCCCCcHHHHHHHHh
Q psy9521 20 VLILGLDNAGKTTYLESAK 38 (125)
Q Consensus 20 i~v~G~~~~GKTsl~~~i~ 38 (125)
.+++|+.|+||||++..+.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 5788999999999999854
No 497
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.30 E-value=0.012 Score=39.68 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=21.1
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
-.-|++.|.+|+||||+++.+...+.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34589999999999999999765443
No 498
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.28 E-value=0.011 Score=41.73 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=21.0
Q ss_pred eEEEEEEeCCCCcHHHHHHHHhhccc
Q psy9521 17 EFCVLILGLDNAGKTTYLESAKTKFT 42 (125)
Q Consensus 17 ~~ki~v~G~~~~GKTsl~~~i~~~~~ 42 (125)
.-.+++.|++|+|||.|+..+.....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45699999999999999998654433
No 499
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.25 E-value=0.0092 Score=47.53 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=21.6
Q ss_pred CceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 15 KDEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 15 ~~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
...-.++++|++|+|||+|++.+.+.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34456999999999999999997654
No 500
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.24 E-value=0.018 Score=37.92 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=20.9
Q ss_pred ceEEEEEEeCCCCcHHHHHHHHhhc
Q psy9521 16 DEFCVLILGLDNAGKTTYLESAKTK 40 (125)
Q Consensus 16 ~~~ki~v~G~~~~GKTsl~~~i~~~ 40 (125)
....|.+.|..||||||+.+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999986543
Done!