RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9521
(125 letters)
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 52.1 bits (124), Expect = 5e-10
Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
Y Y+ + +L++G GKT L ++ F + I + ++D
Sbjct: 3 YDYLFK-----LLLIGDSGVGKTCVLFRFSEDAFNSTFIST----IGIDFKIRTIELDGK 53
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVMP 120
++L WD GQ +++ R MG+ V I N+ S I +
Sbjct: 54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEE 106
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 50.2 bits (119), Expect = 3e-09
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
+L++G GK+ L + KF ++ + I + I+ V+L WD G
Sbjct: 5 ILLIGDSGVGKSCLLVRFVEDKFNPSFI----TTIGIDFKIKTVDINGKKVKLQIWDTAG 60
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCM 117
Q +++ R MG+ V I ++ + I +
Sbjct: 61 QERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT 99
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 49.4 bits (117), Expect = 4e-09
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
Y ++ + ++++G GKT + + F +I+
Sbjct: 2 YDFLFK-----IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTV----EINGE 52
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
V+L WD GQ +S+ R + I + S
Sbjct: 53 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFR 94
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 49.9 bits (118), Expect = 5e-09
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
Y Y+ + +L++G GK+ L + +T +Y S I + ++D
Sbjct: 3 YDYLFK-----LLLIGNSGVGKSCLLLRFSDDTYTNDYI----STIGVDFKIKTVELDGK 53
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
TV+L WD GQ +++ R G+ V + ++ S +
Sbjct: 54 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFN 95
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 48.8 bits (115), Expect = 9e-09
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
F K E +LILGLD AGKTT L + T+G N+ +
Sbjct: 8 FDKLWGSNKELRILILGLDGAGKTTIL--------YRLQIGEVVTTKPTIGFNVETLSYK 59
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
++LN WDLGGQ ++ W D V V +K+ + +++
Sbjct: 60 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLML 111
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 49.0 bits (116), Expect = 1e-08
Identities = 16/85 (18%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFW 74
+ +L+LG +GK+T ++ + + T G+ + ++ V + +
Sbjct: 4 RATHRLLLLGAGESGKSTIVK----QMRIL-------HVVLTSGIFETKFQVDKVNFHMF 52
Query: 75 DLGGQLELQSLWDKDIRDCMGVREV 99
D+GGQ + + W + D + V
Sbjct: 53 DVGGQRDERRKWIQCFNDVTAIIFV 77
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 48.3 bits (114), Expect = 1e-08
Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 5/104 (4%)
Query: 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
+LI+G GK++ L F I + +D N +L WD
Sbjct: 7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAAT----IGVDFKVKTISVDGNKAKLAIWD 62
Query: 76 LGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
GQ ++L R GV V + +++ + +
Sbjct: 63 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE 106
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 47.6 bits (112), Expect = 2e-08
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
+ YM + +LI+G + GKT++L A FT + +
Sbjct: 2 FDYMFK-----ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK----TIYRNDK 52
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREV 99
++L WD GQ +++ R MG +
Sbjct: 53 RIKLQIWDTAGQERYRTITTAYYRGAMGFILM 84
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 46.4 bits (109), Expect = 7e-08
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 11/114 (9%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKN--YKGMNPSKITTTVGLNIGQID 65
FY + V+++G GKT L +F G S + + +D
Sbjct: 2 FYDVAFK-----VMLVGDSGVGKTCLLV----RFKDGAFLAGTFISTVGIDFRNKVLDVD 52
Query: 66 INTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
V+L WD GQ +S+ RD + + + NK S I +
Sbjct: 53 GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIH 106
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 46.4 bits (109), Expect = 9e-08
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKG------MNPSKITTTVGLNI 61
Y Y+++ +L LG GKTT+L KF + + G N
Sbjct: 2 YDYLIK-----LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 56
Query: 62 GQIDINTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
V L WD GQ +SL RD MG + + ++ S + +
Sbjct: 57 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ 114
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 45.4 bits (106), Expect = 2e-07
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 4 LVSGFYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQ 63
L + ++ + E V+I+GLDNAGKTT L + + T+G N+ +
Sbjct: 3 LFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQ--------FSMNEVVHTSPTIGSNVEE 53
Query: 64 IDINTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
I IN R WD+GGQ L+S W+ + V V ++
Sbjct: 54 IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 97
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 44.9 bits (105), Expect = 3e-07
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 10/112 (8%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
Y ++ + L++G GK+ L + KF + + + I +
Sbjct: 2 YDFLFK-----FLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGS----KIINVGGK 52
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
V+L WD GQ +S+ R G V I ++ + + +
Sbjct: 53 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR 104
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 44.1 bits (103), Expect = 6e-07
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L+LG +GK+T+L+ + + T G++ +I V D+GGQ
Sbjct: 5 ILLLGAGESGKSTFLK--QMRIIHGQD--------PTKGIHEYDFEIKNVPFKMVDVGGQ 54
Query: 80 LELQSLWDKDIRDCMGVREVKPIFNKNS 107
+ W + + + +
Sbjct: 55 RSERKRWFECFDSVTSILFLVSSSEFDQ 82
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 43.4 bits (101), Expect = 1e-06
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LG +GK+T+++ + + T G+ D+ +V D+
Sbjct: 2 ELKLLLLGTGESGKSTFIK----QMRIIH-----GSGVPTTGIIEYPFDLQSVIFRMVDV 52
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
GGQ + W + + + + +
Sbjct: 53 GGQRSERRKWIHCFENVTSIMFLVALSEYDQVL 85
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 43.0 bits (100), Expect = 1e-06
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 8 FYKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
+ E +L+LGLD AGKTT L K TVG N+ +
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYK--------LKLGQSVTTIPTVGFNVETVTYK 54
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMG 95
V+ N WD+GGQ +++ LW G
Sbjct: 55 NVKFNVWDVGGQDKIRPLWRHYYTGTQG 82
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 42.6 bits (99), Expect = 2e-06
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LG +GK+T ++ + + G+ + +D+
Sbjct: 2 EVKLLLLGAGESGKSTIVK----QMKIIH--------EAGTGIVETHFTFKDLHFKMFDV 49
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
GGQ + W + + + +
Sbjct: 50 GGQRSERKKWIHCFEGVTAIIFCVALSDYDLVL 82
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 41.4 bits (96), Expect = 4e-06
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 10/102 (9%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDIN 67
Y Y+ + V+++G GK+ L + +F K I Q+D
Sbjct: 1 YDYLFK-----VVLIGDSGVGKSNLLSRFTRNEFNLESKST----IGVEFATRSIQVDGK 51
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
T++ WD GQ + + R +G V I +
Sbjct: 52 TIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYE 93
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 41.0 bits (95), Expect = 7e-06
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 9 YKYMLRKDEFCVLILGLDNAGKTTYLESAKTKFTKN-YKGMNPSKITTTVGLNIGQIDIN 67
Y Y+ + +I+G GK+ L +FT+ + P I G I ++
Sbjct: 1 YSYIFK-----YIIIGDMGVGKSCLL----HQFTEKKFMADCPHTIGVEFGTRIIEVSGQ 51
Query: 68 TVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
++L WD GQ +++ R G V I +++
Sbjct: 52 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRST 91
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 40.4 bits (93), Expect = 1e-05
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L++GLD AGKTT L K T+G N+ ++ + WD+GGQ
Sbjct: 3 ILMVGLDAAGKTTIL--------YKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQ 54
Query: 80 LELQSLWDKDIRDCMGVREVKPIFNK 105
+++ LW ++ G+ V ++
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDR 80
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 37.0 bits (84), Expect = 2e-04
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
+L LGLDNAGKTT L K + + T ++ I ++ +DLGG
Sbjct: 3 LLFLGLDNAGKTTLLHM--------LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGH 54
Query: 80 LELQSLWDKDIRDCMGV 96
++ + LW + G+
Sbjct: 55 IQARRLWKDYFPEVNGI 71
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 37.0 bits (84), Expect = 2e-04
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +L+LGLDNAGKTT L K + G + I+ T+G NI ++ +LN WD+
Sbjct: 2 ELRLLMLGLDNAGKTTIL--------KKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDV 53
Query: 77 GGQLELQSLWDKDIRDCMG 95
GGQ L+S W G
Sbjct: 54 GGQKSLRSYWRNYFESTDG 72
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 36.0 bits (82), Expect = 4e-04
Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 5/90 (5%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F +I+G GK+ L +F + I G + ID ++L WD
Sbjct: 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----LTIGVEFGARMVNIDGKQIKLQIWDT 59
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKN 106
GQ +S+ R G V I +
Sbjct: 60 AGQESFRSITRSYYRGAAGALLVYDITRRE 89
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 35.7 bits (81), Expect = 5e-04
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 5/91 (5%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F V++LG GKT+ + + KF + + T G+ WD
Sbjct: 4 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNL----AIWDT 59
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ +L RD G V I +++S
Sbjct: 60 AGQERFHALGPIYYRDSNGAILVYDITDEDS 90
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 35.3 bits (80), Expect = 7e-04
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFW 74
E +L+LGLDNAGKTT L K + S IT T G NI + +LN W
Sbjct: 14 DQEVRILLLGLDNAGKTTLL--------KQLASEDISHITPTQGFNIKSVQSQGFKLNVW 65
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
D+GGQ +++ W + + V ++
Sbjct: 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKR 98
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 35.1 bits (79), Expect = 9e-04
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 6 SGFYKYM-LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQI 64
S +++ L K ++ LGLDNAGKTT L K + T+ ++
Sbjct: 1 SSVLQFLGLYKKTGKLVFLGLDNAGKTTLL--------HMLKDDRLGQHVPTLHPTSEEL 52
Query: 65 DINTVRLNFWDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
I + +DLGG ++ + +W + G+ + +
Sbjct: 53 TIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER 95
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 35.0 bits (79), Expect = 0.001
Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 9/75 (12%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
++I G N+GKT+ L T + + T + D + + D G
Sbjct: 6 IIIAGPQNSGKTSLLT----LLTTDS-----VRPTVVSQEPLSAADYDGSGVTLVDFPGH 56
Query: 80 LELQSLWDKDIRDCM 94
++L+ ++
Sbjct: 57 VKLRYKLSDYLKTRA 71
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 33.8 bits (76), Expect = 0.002
Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 5/81 (6%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKN-YKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
+F +++LG GK++ + +F K + S I +D TV+ WD
Sbjct: 6 QFKLVLLGESAVGKSSLV----LRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 76 LGGQLELQSLWDKDIRDCMGV 96
GQ SL R
Sbjct: 62 TAGQERYHSLAPMYYRGAQAA 82
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 33.5 bits (75), Expect = 0.003
Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 4/101 (3%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+ILG GKT+ + K+++ YK + + + + WD G
Sbjct: 5 VIILGDSGVGKTSLMHRYVNDKYSQQYK---ATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
Q QSL R V + N +S I +
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFL 102
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 33.1 bits (74), Expect = 0.003
Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 5/102 (4%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
++++G GK++ ++ K FTK+YK + RL WD G
Sbjct: 5 MVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDV----RLMLWDTAG 60
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVMP 120
Q E ++ R V ++ S I V+
Sbjct: 61 QEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVA 102
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 33.5 bits (75), Expect = 0.004
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 8/57 (14%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
VL +GL ++GKT + T++ + +N R N L
Sbjct: 3 VLFVGLCDSGKTLLFV----RLLTG----QYRDTQTSITDSSAIYKVNNNRGNSLTL 51
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 33.0 bits (74), Expect = 0.005
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 5/103 (4%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F V++LG GK++ + KF + G WD
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTM----QIWDT 62
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
GQ +SL R + + S + +
Sbjct: 63 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFI 105
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 31.9 bits (71), Expect = 0.009
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 5/93 (5%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F ++ LG + GKT+ + F Y + I ++ T+RL WD
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTY----QATIGIDFLSKTMYLEDRTIRLQLWDT 56
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
GQ +SL IRD V I N NS
Sbjct: 57 AGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQ 89
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.026
Identities = 9/32 (28%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYK 46
+E + ++GL +GKTT++ A +F ++
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMI 32
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 30.4 bits (67), Expect = 0.032
Identities = 19/103 (18%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
++++G GK+ +F ++Y + I +D RL+ D
Sbjct: 6 THKLVVVGGGGVGKSALT----IQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDT 61
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
GQ E ++ ++ +R G V I ++ S + +G+ ++
Sbjct: 62 AGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 104
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 30.4 bits (67), Expect = 0.040
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E +LILGLD AGKTT L + T+G N+ + ++ WDL
Sbjct: 5 EMRILILGLDGAGKTTILYR--------LQVGEVVTTIPTIGFNVETVTYKNLKFQVWDL 56
Query: 77 GGQLELQSLWDKDIRDCM 94
GG ++ W +
Sbjct: 57 GGLTSIRPYWRCYYSNTD 74
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 29.5 bits (65), Expect = 0.066
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E+ V++LG GK+ +F ++D + L D
Sbjct: 3 EYKVVVLGSGGVGKSALT----VQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDT 58
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
G + S+ D I++ G V + N+ S
Sbjct: 59 AGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQ 91
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 29.2 bits (64), Expect = 0.100
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 20 VLILGLDNAGKTT---YLESAKTKFTKNYKGMNPSKITTTV---GLNIGQIDINTVRLNF 73
++I+G N GK+T L + + G I+ + G+ +D VR
Sbjct: 3 MVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSET 62
Query: 74 WDLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVMP 120
DL +L ++ + I V V + + +
Sbjct: 63 NDLVERLGIERTLQE-IEKADIVLFVLDASSPLDEEDRKILERIKNK 108
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 28.8 bits (63), Expect = 0.13
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQ 79
V ++G NAGK++ L T+ + + P TT R D+ G
Sbjct: 4 VGLVGYPNAGKSSLL----AAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGI 59
Query: 80 LELQSLWDKDIRD 92
+E S +
Sbjct: 60 IEGASEGKGLGLE 72
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.8 bits (63), Expect = 0.13
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
Query: 15 KDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFW 74
++++ ++++G GK+ +F ++Y + ID RL+
Sbjct: 3 QEKYRLVVVGGGGVGKSALT----IQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDIL 58
Query: 75 DLGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAH 109
D GQ E ++ ++ +R G V + ++ S
Sbjct: 59 DTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFE 93
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.5 bits (62), Expect = 0.18
Identities = 18/104 (17%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Query: 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
+ ++++G GK+ + F +Y +ID L+ D
Sbjct: 4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-----KHTEIDNQWAILDVLD 58
Query: 76 LGGQLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
GQ E ++ ++ +R G V + +K S + R +++
Sbjct: 59 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 102
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.0 bits (61), Expect = 0.23
Identities = 7/32 (21%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 16 DEFCVLILGLDNAGKTTYLES-AKTKFTKNYK 46
+++ V + G GK++ + K F ++Y
Sbjct: 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYI 32
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.1 bits (61), Expect = 0.24
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
+++LG GK++ + F +N + I I+ +TV+ WD G
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPT----IGAAFLTQRVTINEHTVKFEIWDTAG 61
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNS 107
Q SL R+ V + S
Sbjct: 62 QERFASLAPMYYRNAQAALVVYDVTKPQS 90
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.0 bits (61), Expect = 0.25
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 5/79 (6%)
Query: 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
E V +LG GK++ + + F N I + Q + WD
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPT----IGASFMTKTVQYQNELHKFLIWD 59
Query: 76 LGGQLELQSLWDKDIRDCM 94
G ++L R
Sbjct: 60 TAGLERFRALAPMYYRGSA 78
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.0 bits (61), Expect = 0.26
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Query: 17 EFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
E+ ++++G GK+ + +N+ ID T L+ D
Sbjct: 3 EYKLVVVGAGGVGKSALT----IQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDT 58
Query: 77 GGQLELQSLWDKDIRDCMGVREVKPIFNKNS 107
GQ E ++ D+ +R G V I N S
Sbjct: 59 AGQEEYSAMRDQYMRTGEGFLCVFAINNTKS 89
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 27.7 bits (60), Expect = 0.29
Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 5/101 (4%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGG 78
V+ILG GKT+ + KF+ YK + I +D V + WD G
Sbjct: 5 VIILGDSGVGKTSLMNQYVNKKFSNQYK----ATIGADFLTKEVMVDDRLVTMQIWDTAG 60
Query: 79 QLELQSLWDKDIRDCMGVREVKPIFNKNSAHLIGRRDCMVM 119
Q QSL R V + N+ + +
Sbjct: 61 QERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFL 101
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 27.8 bits (61), Expect = 0.31
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 13 LRKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLN 72
+ V + G +GK++++ + +G + + N +
Sbjct: 52 IDSSVLNVAVTGETGSGKSSFI-NTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVV 110
Query: 73 FWDLGG 78
FWDL G
Sbjct: 111 FWDLPG 116
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 27.6 bits (60), Expect = 0.39
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 4/82 (4%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLG 77
V+++G GK+ +F + + +D V+++ D
Sbjct: 5 HKVIMVGSGGVGKSALT----LQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTA 60
Query: 78 GQLELQSLWDKDIRDCMGVREV 99
GQ + ++ D R G V
Sbjct: 61 GQEDYAAIRDNYFRSGEGFLCV 82
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 26.9 bits (58), Expect = 0.56
Identities = 14/82 (17%), Positives = 29/82 (35%), Gaps = 6/82 (7%)
Query: 17 EFCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
E+ +++LG GK+ + F + Y V ++D L D
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-----EVDCQQCMLEILD 57
Query: 76 LGGQLELQSLWDKDIRDCMGVR 97
G + ++ D +++ G
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFA 79
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 26.7 bits (58), Expect = 0.68
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 14 RKDEFCVLILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNF 73
+ +L++G GK++ + S + + LN
Sbjct: 29 DVNSLTILVMGKGGVGKSSTVNS----IIGERVVSISPFQSEGPRPVMVSRSRAGFTLNI 84
Query: 74 WDLGGQLELQSLWDKDIR 91
D G +E + D +
Sbjct: 85 IDTPGLIEGGYINDMALN 102
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.5 bits (57), Expect = 0.76
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F ++++G N GKT +F + I ID +++ WD
Sbjct: 3 FKIIVIGDSNVGKTCLTYRFCAGRFPDRT----EATIGVDFRERAVDIDGERIKIQLWDT 58
Query: 77 GGQLELQSLW 86
GQ +
Sbjct: 59 AGQERFRKSM 68
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 26.7 bits (58), Expect = 0.84
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 12/55 (21%)
Query: 22 ILGLDNAGKTTYLESAKTKFTK----NYKGMNPSKITTTVGLNIGQIDINTVRLN 72
I+G+ N GK+T+ A TK NY T+ ++ + R +
Sbjct: 15 IVGMPNVGKSTFF-RAITKSVLGNPANYPY-------ATIDPEEAKVAVPDERFD 61
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 26.5 bits (57), Expect = 0.91
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 18 FCVLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDL 76
F ++++G GKTT+++ +F K Y + V + + ++ N WD
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVAT----LGVEVHPLVFHTNRGPIKFNVWDT 59
Query: 77 GGQLELQSLWDKDIRDCM 94
GQ + L D
Sbjct: 60 AGQEKFGGLRDGYYIQAQ 77
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 26.2 bits (56), Expect = 0.95
Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWD 75
+ ILG + GK++ + +F +Y + T + +N + + V D
Sbjct: 7 IAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 25.4 bits (54), Expect = 1.8
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 15 KDEFCVLILGLDNAGKTTYL 34
D V I+G N GK+T
Sbjct: 6 TDAIKVAIVGRPNVGKSTLF 25
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 25.9 bits (56), Expect = 1.8
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
Y+ ML+ E +L G AGKT E+ K
Sbjct: 82 YRSMLQDREDQSILCTGESGAGKT---ENTK 109
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 25.4 bits (54), Expect = 2.2
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYK 46
++ G+ GK+T L K
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGI 30
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 25.2 bits (54), Expect = 2.4
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 22 ILGLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRL 71
++G ++GKTT +E + + K G +++VR
Sbjct: 6 VVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRH 55
>d1gjia2 b.2.5.3 (A:7-181) p65 subunit of NF-kappa B (NFKB),
N-terminal domain {Chicken (Gallus gallus), C-rel
[TaxId: 9031]}
Length = 175
Score = 24.8 bits (54), Expect = 2.7
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 46 KGMNPSKITTTVGLNIGQIDINTVRLNF 73
K +NP + NI + D+N VRL F
Sbjct: 118 KKINPFNVPEEQLHNIDEYDLNVVRLCF 145
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 25.0 bits (54), Expect = 3.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
Y+ ML + +LI G AGKT E+ K
Sbjct: 116 YRSMLDDRQNQSLLITGESGAGKT---ENTK 143
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 24.9 bits (53), Expect = 3.0
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 10/68 (14%)
Query: 20 VLILGLDNAGKTTYLE--SAKTKFTKNYKGMNPSKITTTVGLNIG-QIDINTVRLNFWDL 76
V ++G + GK+T L S+ +Y TT+ N+G + DL
Sbjct: 4 VGLVGFPSVGKSTLLSVVSSAKPKIADYHF-------TTLVPNLGMVETDDGRSFVMADL 56
Query: 77 GGQLELQS 84
G +E
Sbjct: 57 PGLIEGAH 64
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 25.1 bits (54), Expect = 3.0
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
Y++ML E +LI G AGKT + K
Sbjct: 114 YQFMLTDRENQSILITGESGAGKT---VNTK 141
>d1x9na2 b.40.4.6 (A:754-901) DNA ligase I (LIG1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 24.6 bits (53), Expect = 3.3
Identities = 5/22 (22%), Positives = 8/22 (36%)
Query: 86 WDKDIRDCMGVREVKPIFNKNS 107
DK +V ++ K S
Sbjct: 127 EDKQPEQATTSAQVACLYRKQS 148
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 25.0 bits (54), Expect = 3.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
Y+ M + E CV+I G AGKT E++K
Sbjct: 77 YRSMRQSQENQCVIISGESGAGKT---EASK 104
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 24.7 bits (52), Expect = 3.5
Identities = 6/28 (21%), Positives = 9/28 (32%)
Query: 18 FCVLILGLDNAGKTTYLESAKTKFTKNY 45
+ VL+LG GK+
Sbjct: 2 YKVLLLGAPGVGKSALARIFGGVEDGPE 29
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 24.7 bits (53), Expect = 3.7
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
YK M R + +++ G AGKT SAK
Sbjct: 85 YKQMARDERNQSIIVSGESGAGKT---VSAK 112
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 3.8
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 3/58 (5%)
Query: 20 VLILGLDNAGKTT---YLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFW 74
V I+G N GK+T L K ++ + QI
Sbjct: 8 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHK 65
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 24.5 bits (52), Expect = 4.0
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 20 VLILGLDNAGKTTYLESAKTKFTKNYK 46
V++ G+ G TT + A K
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGV 30
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 24.3 bits (51), Expect = 4.1
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 18 FCVLILGLDNAGKTT---YLESAKTKFTKNYKGMNPSKI 53
V+I G NAGK++ L + + G +
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVL 40
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 24.2 bits (51), Expect = 4.6
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 1/30 (3%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYKGM 48
+++G GKT L S F Y
Sbjct: 8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPT 37
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 24.7 bits (53), Expect = 5.0
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 9 YKYMLRKDE-FCVLILGLDNAGKTTYLESAK 38
Y+ M+ E LI G AGKT E+ K
Sbjct: 112 YQNMVTDRENQSCLITGESGAGKT---ENTK 139
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 24.2 bits (51), Expect = 5.3
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYK 46
++I+G GKT L +K +F + Y
Sbjct: 5 LVIVGDGACGKTCLLIVNSKDQFPEVYV 32
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 24.1 bits (52), Expect = 5.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 22 ILGLDNAGKTTYLESAKTKF---TKNYKGMNPSKITTTVGLNIGQIDINTVRLN 72
I+GL N GK+T L +A TK NY T+ N G + + RL+
Sbjct: 7 IVGLPNVGKST-LFNALTKAGIEAANYPF-------CTIEPNTGVVPMPDPRLD 52
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 23.8 bits (50), Expect = 6.4
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 20 VLILGLDNAGKTTYLES-AKTKFTKNYK 46
++++G GKT L AK F +NY
Sbjct: 5 IVVVGDSQCGKTALLHVFAKDCFPENYV 32
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId:
5076]}
Length = 208
Score = 24.0 bits (51), Expect = 6.4
Identities = 5/34 (14%), Positives = 15/34 (44%)
Query: 12 MLRKDEFCVLILGLDNAGKTTYLESAKTKFTKNY 45
+ + + + GL +GK+T + + ++
Sbjct: 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDR 52
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 23.9 bits (50), Expect = 6.5
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 20 VLILGLDNAGKTTYL 34
VLI+G N GK+T
Sbjct: 3 VLIVGRPNVGKSTLF 17
>d1vpsa_ b.121.6.1 (A:) Polyomavirus coat proteins {Murine
polyomavirus, strain small-plaque 16 [TaxId: 10634]}
Length = 285
Score = 24.1 bits (52), Expect = 6.6
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 51 SKITTTVGLNIGQIDINTVRLNFWDLGGQ-LELQSL 85
+K T TV + + + + +GG+ L+LQ L
Sbjct: 111 NKPTDTVNTKGISTPVEGSQYHVFAVGGEPLDLQGL 146
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 23.6 bits (51), Expect = 7.7
Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 23 LGLDNAGKTTYLESAKTKFTKNYKGMNPSKIT--------TTVGLNIGQIDINTVRLNF 73
LG+ + K + + K + P +T +D++ VRL F
Sbjct: 100 LGVLHVTKKNMMGTMIQKLQRQRLRSRPQGLTEAEQRELEQEAKELKKVMDLSIVRLRF 158
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 23.5 bits (49), Expect = 7.8
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 20 VLILGLDNAGKTTYL 34
++ G N GK+T +
Sbjct: 3 IIFAGRSNVGKSTLI 17
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 23.7 bits (50), Expect = 8.3
Identities = 10/23 (43%), Positives = 10/23 (43%)
Query: 24 GLDNAGKTTYLESAKTKFTKNYK 46
GLD GKTT K N K
Sbjct: 10 GLDRTGKTTQCNILYKKLQPNCK 32
>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
mosquito (Anopheles gambiae) [TaxId: 7165]}
Length = 175
Score = 23.3 bits (50), Expect = 8.7
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
Query: 46 KGMNPSKITTTVGLNIGQIDINTVRLNF-----WDLGGQLELQ 83
++P + G ID+N VRL F G+
Sbjct: 120 IRVDPFRTGFGHAKEPGSIDLNAVRLCFQVFLEGQQRGRFTEP 162
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 23.4 bits (49), Expect = 9.4
Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 24 GLDNAGKTTYLESAKTKFTKNYKGMNPSKITTTVGLNIGQIDINTVRLNFWDLGGQLELQ 83
G AGK+T++ K + P + + Q + + ++ + G L++
Sbjct: 9 GNIAAGKSTFVNILKQLCED--WEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMM 66
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.139 0.420
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 449,384
Number of extensions: 18283
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 187
Number of HSP's successfully gapped: 102
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)