BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9523
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9HB90|RRAGC_HUMAN Ras-related GTP-binding protein C OS=Homo sapiens GN=RRAGC PE=1
SV=1
Length = 399
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 90/95 (94%)
Query: 12 GGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVV 71
G +++ LSF+LTSIYDHSIFEAFSKV+QKLIPQLPTLENLLNI I+NSGIEKAFLFDVV
Sbjct: 206 AGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVV 265
Query: 72 SKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
SKIYIATDSSPVDMQSYELCCDM+D+VIDVS IYG
Sbjct: 266 SKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 300
>sp|Q99K70|RRAGC_MOUSE Ras-related GTP-binding protein C OS=Mus musculus GN=Rragc PE=2
SV=1
Length = 398
Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/95 (86%), Positives = 90/95 (94%)
Query: 12 GGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVV 71
G +++ LSF+LTSIYDHSIFEAFSKV+QKLIPQLPTLENLLNI I+NSGIEKAFLFDVV
Sbjct: 205 AGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVV 264
Query: 72 SKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
SKIYIATDSSPVDMQSYELCCDM+D+VIDVS IYG
Sbjct: 265 SKIYIATDSSPVDMQSYELCCDMIDVVIDVSCIYG 299
>sp|Q9NQL2|RRAGD_HUMAN Ras-related GTP-binding protein D OS=Homo sapiens GN=RRAGD PE=1
SV=1
Length = 400
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/95 (84%), Positives = 90/95 (94%)
Query: 12 GGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVV 71
G ++I LSF+LTSIYDHSIFEAFSKV+QKLIPQLPTLENLLNI I+NSGIEKAFLFDVV
Sbjct: 207 AGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVV 266
Query: 72 SKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
SKIYIATDS+PVDMQ+YELCCDM+D+VID+S IYG
Sbjct: 267 SKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYG 301
>sp|Q7TT45|RRAGD_MOUSE Ras-related GTP-binding protein D OS=Mus musculus GN=Rragd PE=2
SV=2
Length = 449
Score = 168 bits (426), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 80/95 (84%), Positives = 90/95 (94%)
Query: 12 GGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVV 71
G ++I LSF+LTSIYDHSIFEAFSKV+QKLIPQLPTLENLLNI I+NSGIEKAFLFDVV
Sbjct: 256 AGLEKIHLSFYLTSIYDHSIFEAFSKVVQKLIPQLPTLENLLNIFISNSGIEKAFLFDVV 315
Query: 72 SKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
SKIYIATDS+PVDMQ+YELCCDM+D+VID+S IYG
Sbjct: 316 SKIYIATDSTPVDMQTYELCCDMIDVVIDISCIYG 350
>sp|O74544|GTR2_SCHPO GTP-binding protein gtr2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtr2 PE=3 SV=1
Length = 314
Score = 150 bits (378), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 67/95 (70%), Positives = 85/95 (89%)
Query: 13 GYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVS 72
G + + +SFHLTSI+DHSIFEAFS+VIQKLIPQLPTLENLLNI +NS +EKA+LFDV+S
Sbjct: 147 GLENVPISFHLTSIFDHSIFEAFSRVIQKLIPQLPTLENLLNIFCSNSLVEKAYLFDVLS 206
Query: 73 KIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYGK 107
KIY+ATDSSPVD+QSYE+C D +D+++D+ IYG+
Sbjct: 207 KIYVATDSSPVDVQSYEICSDFIDVILDIGSIYGR 241
>sp|P53290|GTR2_YEAST GTP-binding protein GTR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTR2 PE=1 SV=1
Length = 341
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 78/93 (83%)
Query: 13 GYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVS 72
G D + +SF+LTSI+DHSI+EAFS+++QKLIP+L LEN+L+ LI +S IEKAFLFDV S
Sbjct: 153 GLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNS 212
Query: 73 KIYIATDSSPVDMQSYELCCDMVDLVIDVSGIY 105
KIY++TDS+PVD+Q YE+C + +D+ ID+ +Y
Sbjct: 213 KIYVSTDSNPVDIQMYEVCSEFIDVTIDLFDLY 245
>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=gtr1 PE=3 SV=1
Length = 308
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYI---ATDS 80
TSI+D ++F+A+S ++ LIP PTLE+ L + + LF+ + + I +++S
Sbjct: 157 TSIWDETLFKAWSAIVYTLIPNTPTLESHLREFAKAAEAAEVILFERTTFLVISSYSSES 216
Query: 81 SPV-DMQSYELCCDMV 95
+P D +E ++V
Sbjct: 217 NPATDAHRFEKISNIV 232
>sp|Q63487|RRAGB_RAT Ras-related GTP-binding protein B OS=Rattus norvegicus GN=RragB
PE=1 SV=1
Length = 374
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 223 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 254
>sp|Q6NTA4|RRAGB_MOUSE Ras-related GTP-binding protein B OS=Mus musculus GN=Rragb PE=2
SV=1
Length = 374
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 223 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 254
>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum
GN=ragA PE=2 SV=1
Length = 301
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSPV 83
TSI+D ++++A+S ++ LIP + LE L+ ++ LF+ + + I+ + V
Sbjct: 157 TSIWDETLYKAWSSIVYSLIPNVKVLEYNLDKFCKICEADEVVLFEKATFLVISHSARKV 216
Query: 84 --DMQSYE 89
D+ +E
Sbjct: 217 HKDVHRFE 224
>sp|Q5VZM2|RRAGB_HUMAN Ras-related GTP-binding protein B OS=Homo sapiens GN=RRAGB PE=1
SV=1
Length = 374
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 223 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 254
>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga
PE=1 SV=1
Length = 313
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 162 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 193
>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2
SV=1
Length = 313
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 162 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 193
>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1
SV=1
Length = 313
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 162 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 193
>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2 SV=1
Length = 313
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
Query: 24 TSIYDHSIFEAFSKVIQKLIPQLPTLE-NLLN 54
TSI+D ++++A+S ++ +LIP + LE NL N
Sbjct: 162 TSIWDETLYKAWSSIVYQLIPNVQQLEMNLRN 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,765,661
Number of Sequences: 539616
Number of extensions: 1352176
Number of successful extensions: 3776
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3759
Number of HSP's gapped (non-prelim): 21
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)