Query psy9523
Match_columns 107
No_of_seqs 114 out of 200
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r7w_B Gtpase2, GTP-binding pr 100.0 1.6E-36 5.5E-41 244.5 6.4 99 9-107 139-237 (331)
2 3r7w_A Gtpase1, GTP-binding pr 99.6 8E-16 2.8E-20 118.8 9.2 82 18-99 155-251 (307)
3 3llu_A RAS-related GTP-binding 70.5 4 0.00014 27.7 3.4 33 11-43 164-196 (196)
4 3t12_B Gliding protein MGLB; G 45.6 24 0.00084 24.5 3.9 43 46-88 10-56 (136)
5 1p0z_A Sensor kinase CITA; tra 37.0 83 0.0028 20.2 5.8 37 44-80 32-68 (131)
6 3s6n_M SurviVal motor neuron p 26.5 44 0.0015 18.9 2.1 19 24-42 6-25 (37)
7 3zy2_A Putative GDP-fucose pro 23.4 85 0.0029 25.6 4.1 31 43-82 261-291 (362)
8 1wot_A Putative minimal nucleo 20.5 66 0.0023 20.2 2.4 28 46-73 9-36 (98)
9 1ydo_A HMG-COA lyase; TIM-barr 18.4 1.2E+02 0.0041 23.2 3.9 65 2-72 29-105 (307)
10 2zmf_A CAMP and CAMP-inhibited 16.5 1.9E+02 0.0066 18.0 4.0 26 47-72 31-58 (189)
No 1
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=100.00 E-value=1.6e-36 Score=244.52 Aligned_cols=99 Identities=57% Similarity=0.926 Sum_probs=93.8
Q ss_pred hccCCCCceeeEEeecccchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCcceEeeeeccceEEEecCCCCCCchhH
Q psy9523 9 WDSGGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSPVDMQSY 88 (107)
Q Consensus 9 l~~~~~~~~~i~~~~TSI~D~SLy~AwS~IVq~LiP~~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds~~~D~~~f 88 (107)
+.+.|.++.++.||.||+||+++++|||+|+|+++|+.+.+|++|+.||++|+|+||||||++||||||||++|+|++||
T Consensus 139 la~~~~~~~~i~f~eTSAkd~nV~eAFs~iv~~li~~~~~le~~L~~~~~~~~~~~~~LFd~~t~l~iatds~~~d~~~y 218 (331)
T 3r7w_B 139 LLELGLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNSKIYVSTDSNPVDIQMY 218 (331)
T ss_dssp TSSSSCSCCCEEEECCCSSSSHHHHHHHHHHTTSSTTHHHHHHHHTGGGCSSSEEEEEEEESSSCCCSEECSSCCCHHHH
T ss_pred HHhhcccccCceEEEeccCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCcEEEEEEeccEEEEEcCCCCcchhHH
Confidence 34445556789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCC
Q psy9523 89 ELCCDMVDLVIDVSGIYGK 107 (107)
Q Consensus 89 E~~sd~I~v~~d~~~iY~~ 107 (107)
|+|||||||++|+++|||.
T Consensus 219 e~csd~idv~~d~~~iy~~ 237 (331)
T 3r7w_B 219 EVCSEFIDVTIDLFDLYKA 237 (331)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999984
No 2
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.63 E-value=8e-16 Score=118.82 Aligned_cols=82 Identities=21% Similarity=0.346 Sum_probs=76.1
Q ss_pred eeEEeecccchhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhcCcceEeeeeccceEEEecCCCC---------------
Q psy9523 18 TLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSP--------------- 82 (107)
Q Consensus 18 ~i~~~~TSI~D~SLy~AwS~IVq~LiP~~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds~~--------------- 82 (107)
++.++.||.+++++++||++++++++|+.+.+|+.|+.++..|++++++|||+.|++|||+|+++
T Consensus 155 ~~~~~~tSa~~~~i~e~~~~iv~~li~~~~~le~~l~~~~~~~~~~~~~l~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 234 (307)
T 3r7w_A 155 NLIGFPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMNALEIILFERTTFLVICSSNGENSNENHDSSDNNNVL 234 (307)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTEEEEEEEETTTCCEEEECC-----------------
T ss_pred CeEEEEeeecCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCcEEEEEeeeeEEEEEecCCcccccccccccccccc
Confidence 47899999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCchhHHHHHHHHHHHH
Q psy9523 83 VDMQSYELCCDMVDLVI 99 (107)
Q Consensus 83 ~D~~~fE~~sd~I~v~~ 99 (107)
.+.+|||+++++++-+.
T Consensus 235 ~~~~R~~~i~~i~~~~~ 251 (307)
T 3r7w_A 235 LDPKRFEKISNIMKNFK 251 (307)
T ss_dssp CCTTHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHH
Confidence 37899999999998774
No 3
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=70.48 E-value=4 Score=27.71 Aligned_cols=33 Identities=73% Similarity=1.095 Sum_probs=27.4
Q ss_pred cCCCCceeeEEeecccchhHHHHHHHHHHHHHc
Q psy9523 11 SGGYDQITLSFHLTSIYDHSIFEAFSKVIQKLI 43 (107)
Q Consensus 11 ~~~~~~~~i~~~~TSI~D~SLy~AwS~IVq~Li 43 (107)
+.+.+...+.|+.||..++.+-++|..+++.|+
T Consensus 164 ~~~~~~~~~~~~e~Sa~~~~v~~~f~~l~~~li 196 (196)
T 3llu_A 164 DAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 196 (196)
T ss_dssp HTTCTTSCEEEEEECTTSTHHHHHHHHHHHHTC
T ss_pred HhhhhcCCcceEEEEechhhHHHHHHHHHHHhC
Confidence 344446678899999999999999999999875
No 4
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=45.58 E-value=24 Score=24.48 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHhcCcceEeeeeccceEEEecC----CCCCCchhH
Q psy9523 46 LPTLENLLNILINNSGIEKAFLFDVVSKIYIATD----SSPVDMQSY 88 (107)
Q Consensus 46 ~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtd----s~~~D~~~f 88 (107)
.+.+++.|+.|....|++-++|-|+.=++.-+.. .++.|..++
T Consensus 10 ~~~i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~l 56 (136)
T 3t12_B 10 YAAAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTL 56 (136)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHH
T ss_pred HHHHHHHHHHHHhhcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHH
Confidence 5678999999999999999999999998766653 456676544
No 5
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=37.03 E-value=83 Score=20.23 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=31.0
Q ss_pred CChHHHHHHHHHHHHhcCcceEeeeeccceEEEecCC
Q psy9523 44 PQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDS 80 (107)
Q Consensus 44 P~~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds 80 (107)
|+-..++..|+.+....+++-+++.|+.-..+-+++.
T Consensus 32 ~~~~~l~~~~~~~~~~~~~~~i~v~d~~G~~~a~~~~ 68 (131)
T 1p0z_A 32 RDLARIKALIDPMRSFSDATYITVGDASGQRLYHVNP 68 (131)
T ss_dssp TCHHHHHHHHHHHHHHSCCSEEEEEETTSBEEECSSG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEcCCCcEEEecCh
Confidence 5546799999999999999999999998877666653
No 6
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=26.48 E-value=44 Score=18.93 Aligned_cols=19 Identities=21% Similarity=0.667 Sum_probs=14.8
Q ss_pred cccchhH-HHHHHHHHHHHH
Q psy9523 24 TSIYDHS-IFEAFSKVIQKL 42 (107)
Q Consensus 24 TSI~D~S-Ly~AwS~IVq~L 42 (107)
.-|||.| |-+|.-|-|++.
T Consensus 6 SDiWDdtALIKayDKAVaSf 25 (37)
T 3s6n_M 6 SDIWDDTALIKAYDKAVASF 25 (37)
T ss_pred hhhhhhHHHHHHHHHHHHHH
Confidence 3589887 778888888774
No 7
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A*
Probab=23.44 E-value=85 Score=25.59 Aligned_cols=31 Identities=13% Similarity=0.299 Sum_probs=23.3
Q ss_pred cCChHHHHHHHHHHHHhcCcceEeeeeccceEEEecCCCC
Q psy9523 43 IPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSP 82 (107)
Q Consensus 43 iP~~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds~~ 82 (107)
+|.++.+-+.+......-+ ...+|||||+.+
T Consensus 261 lPSle~I~rqIk~~vk~~~---------lksVFIATDa~~ 291 (362)
T 3zy2_A 261 SPSKQQILEQIVEKVGSIG---------AKSVFVASDKDH 291 (362)
T ss_dssp SCCHHHHHHHHHHHHHHHT---------CSEEEEEESSCC
T ss_pred CCCHHHHHHHHHHHHHhcC---------CcEEEEecCCHH
Confidence 7888877777777776654 556789999865
No 8
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=20.52 E-value=66 Score=20.18 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHhcCcceEeeeeccce
Q psy9523 46 LPTLENLLNILINNSGIEKAFLFDVVSK 73 (107)
Q Consensus 46 ~~~le~~L~~~~~~~~aeev~LFe~~T~ 73 (107)
++.+.+.+..+++..+..+++||-...+
T Consensus 9 l~~l~~~i~~l~~~~~v~~v~LFGS~ar 36 (98)
T 1wot_A 9 LRARREAVLSLCARHGAVRVRVFGSVAR 36 (98)
T ss_dssp HHHHHHHHHHHHHHHTCSSCEECSHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEEEccccC
Confidence 3455667777777788999999976443
No 9
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=18.38 E-value=1.2e+02 Score=23.17 Aligned_cols=65 Identities=26% Similarity=0.388 Sum_probs=39.6
Q ss_pred ccccchhhcc-CCCCceeeEEeecccchhHHHHHHHHHHHH-----------HcCChHHHHHHHHHHHHhcCcceEeeee
Q psy9523 2 EKLEFYSWDS-GGYDQITLSFHLTSIYDHSIFEAFSKVIQK-----------LIPQLPTLENLLNILINNSGIEKAFLFD 69 (107)
Q Consensus 2 ~~~~~~~l~~-~~~~~~~i~~~~TSI~D~SLy~AwS~IVq~-----------LiP~~~~le~~L~~~~~~~~aeev~LFe 69 (107)
+|++..+.++ .|.+.+++.++..+-|-..+-++| .++.. |.||..-++..++ ||++.+-+|.
T Consensus 29 ~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~-~~~~~~~~~~~~~~~~l~~~~~~i~~a~~-----~g~~~v~i~~ 102 (307)
T 1ydo_A 29 DKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI-DVAKGIDREKGVTYAALVPNQRGLENALE-----GGINEACVFM 102 (307)
T ss_dssp HHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHH-HHHHHSCCCTTCEEEEECCSHHHHHHHHH-----HTCSEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECCCcCcccccccCCHH-HHHHHhhhcCCCeEEEEeCCHHhHHHHHh-----CCcCEEEEEe
Confidence 4666666555 699999999988775533333333 22222 2366555555444 6899888876
Q ss_pred ccc
Q psy9523 70 VVS 72 (107)
Q Consensus 70 ~~T 72 (107)
..|
T Consensus 103 ~~s 105 (307)
T 1ydo_A 103 SAS 105 (307)
T ss_dssp ESS
T ss_pred ecC
Confidence 544
No 10
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=16.47 E-value=1.9e+02 Score=18.03 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCcceEe--eeeccc
Q psy9523 47 PTLENLLNILINNSGIEKAF--LFDVVS 72 (107)
Q Consensus 47 ~~le~~L~~~~~~~~aeev~--LFe~~T 72 (107)
..|+..++......+|+.+. |+|..+
T Consensus 31 ~ll~~i~~~~~~~l~ad~~~i~l~d~~~ 58 (189)
T 2zmf_A 31 SLLEHIMIYAKNLVNADRCALFQVDHKN 58 (189)
T ss_dssp HHHHHHHHHHHHHHTEEEEEEEEEETTT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEecCC
Confidence 46788888889999999875 455544
Done!