Query psy9523
Match_columns 107
No_of_seqs 114 out of 200
Neff 4.6
Searched_HMMs 13730
Date Fri Aug 16 21:49:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9523.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9523hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p0za_ d.110.6.1 (A:) Sensor 54.3 17 0.0012 22.3 5.8 37 44-80 32-68 (131)
2 d1j3wa_ d.110.7.1 (A:) Giding 24.1 77 0.0056 19.7 5.2 33 46-78 8-40 (134)
3 d3by8a1 d.110.6.1 (A:46-178) F 17.5 40 0.0029 20.9 2.6 34 47-80 35-68 (133)
4 d1x25a1 d.79.1.1 (A:1-124) Hyp 15.5 88 0.0064 18.6 3.8 26 17-45 72-97 (124)
5 d1wota_ d.218.1.5 (A:) Unnamed 14.2 54 0.0039 19.4 2.4 22 51-72 14-35 (98)
6 d1v43a2 b.40.6.3 (A:304-373) H 14.2 20 0.0014 19.8 0.2 13 61-73 54-66 (70)
7 d2ewca1 d.79.1.1 (A:3-122) Hyp 13.8 1.3E+02 0.0097 18.0 4.5 26 17-45 62-87 (120)
8 d1g2914 b.40.6.3 (1:302-372) M 13.6 27 0.002 19.2 0.7 14 60-73 54-67 (71)
9 d1sh5a2 a.40.1.1 (A:128-237) A 13.5 35 0.0026 20.8 1.4 32 12-46 20-51 (110)
10 d1dqwa_ c.1.2.3 (A:) Orotidine 11.6 80 0.0058 21.5 3.0 31 70-105 28-58 (267)
No 1
>d1p0za_ d.110.6.1 (A:) Sensor kinase CitA {Klebsiella pneumoniae [TaxId: 573]}
Probab=54.30 E-value=17 Score=22.32 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=33.0
Q ss_pred CChHHHHHHHHHHHHhcCcceEeeeeccceEEEecCC
Q psy9523 44 PQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDS 80 (107)
Q Consensus 44 P~~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds 80 (107)
|+.+.|+..++.+....+++-+++-|+.=..+-++|.
T Consensus 32 ~d~~~l~~~~~~l~~~~~~~~i~v~D~~G~v~a~~~~ 68 (131)
T d1p0za_ 32 RDLARIKALIDPMRSFSDATYITVGDASGQRLYHVNP 68 (131)
T ss_dssp TCHHHHHHHHHHHHHHSCCSEEEEEETTSBEEECSSG
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEEECCCCCEEEccCh
Confidence 7778899999999999999999999999987766665
No 2
>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}
Probab=24.11 E-value=77 Score=19.68 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHhcCcceEeeeeccceEEEec
Q psy9523 46 LPTLENLLNILINNSGIEKAFLFDVVSKIYIAT 78 (107)
Q Consensus 46 ~~~le~~L~~~~~~~~aeev~LFe~~T~L~IAt 78 (107)
.+.+++.|+.|....|++-++|.++.=++.-.+
T Consensus 8 ~e~i~~vL~~l~~~~Gv~~a~lvs~dGl~ia~~ 40 (134)
T d1j3wa_ 8 YERAVEVLEETLRETGARYALLIDRKGFVLAHK 40 (134)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEEETTSCEEEEE
T ss_pred HHHHHHHHHHHhhccCceEEEEECCCCcEEEee
Confidence 467899999999999999999999999877654
No 3
>d3by8a1 d.110.6.1 (A:46-178) Fumarate sensor DcuS {Escherichia coli [TaxId: 562]}
Probab=17.55 E-value=40 Score=20.86 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcCcceEeeeeccceEEEecCC
Q psy9523 47 PTLENLLNILINNSGIEKAFLFDVVSKIYIATDS 80 (107)
Q Consensus 47 ~~le~~L~~~~~~~~aeev~LFe~~T~L~IAtds 80 (107)
+.++..++.+....+++-+++.|+.-..+-++|.
T Consensus 35 ~~lq~~~e~~~~~~ga~~i~v~D~~G~~~a~~~~ 68 (133)
T d3by8a1 35 SGIQAIAEAVRKRNDLLFIVVTDMQSLRYSHPEA 68 (133)
T ss_dssp CSHHHHHHHHHHHTTCSEEEEEETTCBBSCCSSG
T ss_pred HHHHHHHHHHHHHcCCcEEEEEcCCccEEEeCCh
Confidence 4689999999999999999999999877666654
No 4
>d1x25a1 d.79.1.1 (A:1-124) Hypothetical protein ST0811 {Sulfolobus tokodaii [TaxId: 111955]}
Probab=15.52 E-value=88 Score=18.61 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=20.6
Q ss_pred eeeEEeecccchhHHHHHHHHHHHHHcCC
Q psy9523 17 ITLSFHLTSIYDHSIFEAFSKVIQKLIPQ 45 (107)
Q Consensus 17 ~~i~~~~TSI~D~SLy~AwS~IVq~LiP~ 45 (107)
+++++|.|++-| |.+++++-.+..|+
T Consensus 72 vk~~~yv~d~~~---~~~~~~v~~~~f~~ 97 (124)
T d1x25a1 72 AMAFVFLKDMNM---FNDFNSVYAEYFKD 97 (124)
T ss_dssp EEEEEEESCGGG---HHHHHHHHHHHCCS
T ss_pred EEEEEEECCHHH---HHHHHHHHHHhccc
Confidence 689999998754 78888888777763
No 5
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]}
Probab=14.18 E-value=54 Score=19.35 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCcceEeeeeccc
Q psy9523 51 NLLNILINNSGIEKAFLFDVVS 72 (107)
Q Consensus 51 ~~L~~~~~~~~aeev~LFe~~T 72 (107)
+.+..+++..+..+++||-...
T Consensus 14 ~~i~~i~~k~~v~~v~lFGS~a 35 (98)
T d1wota_ 14 EAVLSLCARHGAVRVRVFGSVA 35 (98)
T ss_dssp HHHHHHHHHHTCSSCEECSHHH
T ss_pred HHHHHHHHHcCCcEEEEECCcc
Confidence 4455567778999999997653
No 6
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=14.16 E-value=20 Score=19.77 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=9.3
Q ss_pred CcceEeeeeccce
Q psy9523 61 GIEKAFLFDVVSK 73 (107)
Q Consensus 61 ~aeev~LFe~~T~ 73 (107)
+.+++.|||+.|-
T Consensus 54 d~~~~~lFD~~tg 66 (70)
T d1v43a2 54 DLDMIHVFDKDTE 66 (70)
T ss_dssp EGGGCEEEETTTC
T ss_pred CcccEEEEcchhc
Confidence 4567888887763
No 7
>d2ewca1 d.79.1.1 (A:3-122) Hypothetical protein SPy2060 {Streptococcus pyogenes [TaxId: 1314]}
Probab=13.84 E-value=1.3e+02 Score=18.02 Aligned_cols=26 Identities=8% Similarity=0.273 Sum_probs=20.9
Q ss_pred eeeEEeecccchhHHHHHHHHHHHHHcCC
Q psy9523 17 ITLSFHLTSIYDHSIFEAFSKVIQKLIPQ 45 (107)
Q Consensus 17 ~~i~~~~TSI~D~SLy~AwS~IVq~LiP~ 45 (107)
+++++|.|.+- -|.++.++..+..|+
T Consensus 62 vkvtvyltd~~---~~~~~~~v~~~~f~~ 87 (120)
T d2ewca1 62 VQMDCLFRDVW---NIPVMEKMIKERFNG 87 (120)
T ss_dssp EEEEEEESSGG---GHHHHHHHHHHHSTT
T ss_pred eeeeeeeccHH---HHHHHHHHHHHHcCC
Confidence 68999999773 488888888887754
No 8
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=13.56 E-value=27 Score=19.19 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=10.1
Q ss_pred cCcceEeeeeccce
Q psy9523 60 SGIEKAFLFDVVSK 73 (107)
Q Consensus 60 ~~aeev~LFe~~T~ 73 (107)
-+.+++.|||..|-
T Consensus 54 ~~~~~~hlFD~~tg 67 (71)
T d1g2914 54 FDMKKIHIFDKTTG 67 (71)
T ss_dssp ECGGGCEEEETTTC
T ss_pred ECcccEEEEcchhC
Confidence 35678888887763
No 9
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.48 E-value=35 Score=20.84 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=26.7
Q ss_pred CCCCceeeEEeecccchhHHHHHHHHHHHHHcCCh
Q psy9523 12 GGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQL 46 (107)
Q Consensus 12 ~~~~~~~i~~~~TSI~D~SLy~AwS~IVq~LiP~~ 46 (107)
+++.+++|+=|.||+-|- .||..+++++-|++
T Consensus 20 ~~y~~v~v~nFs~sw~DG---~afcaLih~~~P~~ 51 (110)
T d1sh5a2 20 EGYQGLRCDNFTTSWRDG---RLFNAIIHRHKPML 51 (110)
T ss_dssp TTSTTCCCCCSSGGGTTS---HHHHHHHHTTCTTT
T ss_pred CCCCCeeccCCcccccCc---HHHHHHHHHHCccc
Confidence 466778888899998886 57888999999987
No 10
>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.55 E-value=80 Score=21.53 Aligned_cols=31 Identities=6% Similarity=0.055 Sum_probs=23.2
Q ss_pred ccceEEEecCCCCCCchhHHHHHHHHHHHHhhhccc
Q psy9523 70 VVSKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIY 105 (107)
Q Consensus 70 ~~T~L~IAtds~~~D~~~fE~~sd~I~v~~d~~~iY 105 (107)
+.|+|+||-|. .+-+.+-++++-+-|.-+.|
T Consensus 28 Kks~L~vALD~-----~~~~eal~li~~l~~~v~~~ 58 (267)
T d1dqwa_ 28 KQTNLCASLDV-----RTTKELLELVEALGPKICLL 58 (267)
T ss_dssp HTCCEEEECCC-----SSHHHHHHHHHHHGGGCSEE
T ss_pred ccCCEEEEecc-----CCHHHHHHHHHHhCCcceEE
Confidence 47899999664 45677788888887776665
Done!