RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9523
(107 letters)
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 129 bits (325), Expect = 3e-38
Identities = 56/94 (59%), Positives = 78/94 (82%)
Query: 13 GYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVS 72
G D + +SF+LTSI+DHSI+EAFS+++QKLIP+L LEN+L+ LI +S IEKAFLFDV S
Sbjct: 143 GLDGVQVSFYLTSIFDHSIYEAFSRIVQKLIPELSFLENMLDNLIQHSKIEKAFLFDVNS 202
Query: 73 KIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
KIY++TDS+PVD+Q YE+C + +D+ ID+ +Y
Sbjct: 203 KIYVSTDSNPVDIQMYEVCSEFIDVTIDLFDLYK 236
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 107 bits (267), Expect = 8e-30
Identities = 19/105 (18%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 2 EKLEFYSWDSGGYDQITLSFHLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSG 61
++ S S + L TSI+D S+++A+S+++ LIP + ++ L
Sbjct: 139 IMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLIPNMSNHQSNLKKFKEIMN 198
Query: 62 IEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIYG 106
+ LF+ + + I + + ++++ D ++++D
Sbjct: 199 ALEIILFERTTFLVICSSNGENSNENHD-SSDNNNVLLDPKRFEK 242
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 45.0 bits (106), Expect = 5e-07
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 11 SGGYDQITLSFHLTSIYDHSIFEAFSKVIQKLI 43
G +++ LSF+LTSIYDHSIFEAFSKV+QKLI
Sbjct: 164 DAGLEKLHLSFYLTSIYDHSIFEAFSKVVQKLI 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.014
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 15/79 (18%)
Query: 18 TLSFHLTSIY----DHSI-----FEAFSKVIQKLIPQLPTLENLLNIL--INNSGIEKAF 66
L + + + DHS + +++L+ P LL +L + N+ AF
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAF 262
Query: 67 LFDVVSKIYIAT-DSSPVD 84
++ KI + T D
Sbjct: 263 --NLSCKILLTTRFKQVTD 279
Score = 27.9 bits (61), Expect = 0.72
Identities = 20/141 (14%), Positives = 35/141 (24%), Gaps = 60/141 (42%)
Query: 6 FYSWDSG-----GYDQITLSFHLTSIYDHSIFEAFSKVI-------QKLI---------- 43
F S D Y + HL +I F V QK+
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 44 -----------------PQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSPVDMQ 86
P E L+N +++ FL + + S
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILD-------FLPKIEENLIC----SK---- 563
Query: 87 SYELCCDMVDLVI--DVSGIY 105
D++ + + + I+
Sbjct: 564 ----YTDLLRIALMAEDEAIF 580
Score = 24.8 bits (53), Expect = 9.2
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 27 YDHSIFEAFSKVIQKLIPQLPTLE-----NLLNILINNSGIEKAFL 67
+ H + + +I+ + L E + L++ ++ I L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.036
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 22/43 (51%)
Query: 40 QKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSP 82
+K L L+ L K+Y A DS+P
Sbjct: 18 EK--QALKKLQASL-------------------KLY-ADDSAP 38
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 31.1 bits (71), Expect = 0.050
Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 13/76 (17%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENL--LNILINNSGIEKAFLFDVVSKIYIATDSSPVDM 85
D + +++I ++L+NN+ D
Sbjct: 82 DLTNSNVLPASCEEIINS--CFRAFGRCDVLVNNASAFYPTPLV---------QGDHEDN 130
Query: 86 QSYELCCDMVDLVIDV 101
+ + V +I
Sbjct: 131 SNGKTVETQVAELIGT 146
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 28.0 bits (63), Expect = 0.53
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 21/72 (29%)
Query: 30 SIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSSPVDMQSYE 89
+ A + K +++ +N +GI A SK Y ++ +
Sbjct: 72 DVQTALALAKGKFGR--------VDVAVNCAGIAVA------SKTYNLKKGQTHTLEDF- 116
Query: 90 LCCDMVDLVIDV 101
V+DV
Sbjct: 117 ------QRVLDV 122
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 27.9 bits (63), Expect = 0.55
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
++L L L L+IL+NN+G
Sbjct: 92 ARRLAQALGELSARLDILVNNAGT 115
>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase,
short chain dehydrogenase/oxidoreductase, SD comamonas
testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A*
3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*
Length = 281
Score = 27.6 bits (62), Expect = 0.76
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 14/49 (28%)
Query: 53 LNILINNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMVDLVIDV 101
++ LI N+GI S+ + + D + V
Sbjct: 80 IDTLIPNAGIWD--------------YSTALADLPEDKIDAAFDDIFHV 114
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 27.5 bits (62), Expect = 0.87
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 53 LNILINNSGIEKAFLFDV 70
++IL+NN+G FD+
Sbjct: 89 VDILVNNAGGGGPKPFDM 106
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 27.1 bits (61), Expect = 1.0
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENL--LNILINNSGIEKAFLFDVVS 72
+ + L +L +ILINN+GI + +
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETT 111
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei
unknown function, MLTA, bacteria autolysis,
peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB:
2bh0_A
Length = 208
Score = 26.7 bits (59), Expect = 1.2
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 1 MEKLEFYSWDSGGYDQITLSFHLTSIYDHSI 31
MEK+++ + S +L +T I +
Sbjct: 152 MEKMDYNHFVSTNLGTGSLKVRMTDIRGKVV 182
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 26.7 bits (60), Expect = 1.3
Identities = 2/16 (12%), Positives = 8/16 (50%)
Query: 53 LNILINNSGIEKAFLF 68
++ +++N I +
Sbjct: 73 IDTIVSNDYIPRPMNR 88
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 26.9 bits (59), Expect = 1.5
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 55 ILINNSGIEKAFLFDVVSKIYIATDSSPVDMQSYELCCDMVDLVIDVSGIY 105
I+N + L D +YIA + +++ +L D V +Y
Sbjct: 135 ATIDNCYYDAGLLIDDDDTMYIAYGNPTINVA--QLSPDGTRQVRVQQRVY 183
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 26.7 bits (60), Expect = 1.6
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 53 LNILINNSGIEKAFLF 68
L+++INN+G+E
Sbjct: 86 LDVMINNAGLENPVSS 101
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 26.3 bits (59), Expect = 1.7
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 53 LNILINNSGIEKAFLFDV 70
+ +L+NN+G FD+
Sbjct: 90 ITVLVNNAGGGGPKPFDM 107
>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural
genomics, center for structural genomics of infec
diseases, csgid; 2.80A {Bacillus anthracis}
Length = 267
Score = 26.4 bits (59), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 39 IQKLIPQLPTLENLLNILINNSGIEKAFLF 68
Q +I + P ++ ILINN GI + +
Sbjct: 76 CQDVIEKYPKVD----ILINNLGIFEPVEY 101
>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent
oxidoreductase (SDR family), structural genomics, PSI;
2.60A {Caenorhabditis elegans} SCOP: c.2.1.2
Length = 250
Score = 26.1 bits (58), Expect = 2.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D S+ SKV + + + L++LINN+G+
Sbjct: 63 DKSLDTFVSKVGEIV------GSDGLSLLINNAGV 91
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 26.1 bits (58), Expect = 2.2
Identities = 11/76 (14%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENL--LNILINNSGIEKAFLFDVVSKIYIATDSSPVDM 85
D S+ + + +I + ++L+NN+ A D+ P+D
Sbjct: 70 DLSLSSSLLDCCEDIIDC--SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPID- 126
Query: 86 QSYELCCDMVDLVIDV 101
V +
Sbjct: 127 -------AQVAELFGS 135
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5
P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A*
3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 26.2 bits (58), Expect = 2.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
I+ L L L++L+NN+GI
Sbjct: 69 IRALRDFLRKEYGGLDVLVNNAGI 92
>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid
biosynthesis, reduction of tropinone to tropine,
short-chain dehydrogenase; HET: NAP; 2.40A {Datura
stramonium} SCOP: c.2.1.2
Length = 273
Score = 26.0 bits (58), Expect = 2.7
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 53 LNILINNSGIEK 64
LNIL+NN+G+
Sbjct: 100 LNILVNNAGVVI 111
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor
complex, catalytic fragment, S genomics, structural
genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens}
PDB: 3kcz_A* 1gs0_A
Length = 368
Score = 25.9 bits (56), Expect = 3.1
Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 3/76 (3%)
Query: 22 HLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSS 81
+ + I F LI L + +L IE A + K + +
Sbjct: 89 EACNEFYTRIPHDFGLRTPPLIRTQKELSEKIQLLEALGDIEIAIK---LVKTELQSPEH 145
Query: 82 PVDMQSYELCCDMVDL 97
P+D L C + L
Sbjct: 146 PLDQHYRNLHCALRPL 161
>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane
alkaloid biosynthesis, reduction of tropinone to
pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium}
SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*
Length = 260
Score = 25.5 bits (57), Expect = 3.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 53 LNILINNSGIEK 64
LNIL+NN+GI
Sbjct: 88 LNILVNNAGIVI 99
>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site
inhibitor complex, dinucleotide binding fold,
oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea}
SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*
Length = 283
Score = 25.7 bits (57), Expect = 3.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 53 LNILINNSGIEKAFLFDVVS 72
L+I+ +NSG+ V+
Sbjct: 108 LDIVCSNSGVVSFGHVKDVT 127
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 25.5 bits (57), Expect = 3.6
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 53 LNILINNSGI 62
L+ILINN G
Sbjct: 93 LDILINNLGA 102
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold,
rossmann fold, oxidoreductase; HET: NAP; 2.30A
{Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 25.1 bits (56), Expect = 4.3
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D S +++ I T++ +++NN+GI
Sbjct: 59 DVSKEADVEAMMKTAIDAWGTID----VVVNNAGI 89
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 25.2 bits (56), Expect = 4.8
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 53 LNILINNSGIEKAFLF 68
++ L+NN+G+ A F
Sbjct: 97 IDSLVNNAGVFLAKPF 112
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 25.2 bits (56), Expect = 5.0
Identities = 3/16 (18%), Positives = 7/16 (43%)
Query: 53 LNILINNSGIEKAFLF 68
L++ +NN+
Sbjct: 83 LDVFVNNAASGVLRPV 98
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 24.9 bits (55), Expect = 5.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 53 LNILINNSGIEKAFLFDVVS 72
L+I ++NSG+ V+
Sbjct: 97 LDIAVSNSGVVSFGHLKDVT 116
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 24.8 bits (55), Expect = 5.6
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D S + +I + L+ +L+NN+GI
Sbjct: 86 DVSQESEVEALFAAVIERWGRLD----VLVNNAGI 116
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 24.9 bits (55), Expect = 5.9
Identities = 5/12 (41%), Positives = 10/12 (83%)
Query: 53 LNILINNSGIEK 64
L+ +++NSG+E
Sbjct: 100 LDFVMSNSGMEV 111
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural
genomics, secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 24.7 bits (55), Expect = 6.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
+ EA + ++ + L L+ L+NN+GI
Sbjct: 60 NLLEAEAATALVHQAAEVLGGLD----TLVNNAGI 90
>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease, oxidoreductase; HET:
EPE; 1.50A {Mycobacterium paratuberculosis}
Length = 291
Score = 24.9 bits (55), Expect = 6.0
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 53 LNILINNSGI 62
++LINN+GI
Sbjct: 87 ADVLINNAGI 96
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 25.0 bits (55), Expect = 6.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 53 LNILINNSGI 62
LN+L NN+GI
Sbjct: 103 LNVLFNNAGI 112
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid,
3-ketoacyl-(acyl-carrier- protein) reductase,
oxidoreductase, structural genomics; 2.05A {Burkholderia
pseudomallei}
Length = 270
Score = 24.8 bits (55), Expect = 6.3
Identities = 7/35 (20%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
+ + A +++ + + L +L+NN+GI
Sbjct: 85 NVNDATAVDALVESTLKEFGALN----VLVNNAGI 115
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 24.7 bits (55), Expect = 6.9
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D E +++ + ++ IL+NN+GI
Sbjct: 63 DVKNPEDVENMVKTAMDAFGRID----ILVNNAGI 93
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 24.8 bits (55), Expect = 6.9
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D S E S+VI K++ + ++ IL+NN+GI
Sbjct: 101 DVSKKEEISEVINKILTEHKNVD----ILVNNAGI 131
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 24.8 bits (55), Expect = 7.0
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D S + +K IQ++ L + + LI N+G+
Sbjct: 72 DVSNTDIVTKTIQQIDADLGPI----SGLIANAGV 102
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 24.6 bits (54), Expect = 7.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
I+ I LP ++IL+NN+G
Sbjct: 102 IKPFIENLPQEFKDIDILVNNAGK 125
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family,
rossmann-fold, short-chain dehydrogenase/reducta
ALLO-threonine dehydrogenase; 1.90A {Escherichia coli}
PDB: 3asv_A*
Length = 248
Score = 24.8 bits (55), Expect = 7.4
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
I++++ LP ++IL+NN+G+
Sbjct: 61 IEEMLASLPAEWCNIDILVNNAGL 84
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 24.5 bits (54), Expect = 7.4
Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEK 64
D + + ++ ++ ++ ++ IL+NN+GI +
Sbjct: 91 DVTDEDGIQAMVAQIESEVGIID----ILVNNAGIIR 123
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta
protein, NAD(P)-binding rossmann fold, csgid,
oxidoreductase; 1.95A {Francisella tularensis subsp}
Length = 247
Score = 24.8 bits (55), Expect = 7.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
IQ ++ ++IL+NN+GI
Sbjct: 69 IQNFFAEIKAENLAIDILVNNAGI 92
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 24.4 bits (54), Expect = 7.8
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 39 IQKLIPQLPTLENLLNILINNSGI 62
I++L ++IL+NN+GI
Sbjct: 88 IKQLAEVAEREMEGIDILVNNAGI 111
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur
genomics, JCSG, PSI, protein structure initiative,
joint CE structural genomics; HET: NAD; 2.50A
{Thermotoga maritima} SCOP: c.2.1.2
Length = 249
Score = 24.4 bits (54), Expect = 8.0
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 35 FSKVIQKLIPQLPTLENLLNILINNSGIEKAFLF 68
K + L ++ + +IL+ N+G KA F
Sbjct: 68 LRKDLDLLFEKVKEV----DILVLNAGGPKAGFF 97
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 24.6 bits (54), Expect = 8.1
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D +++ + +LINN+
Sbjct: 68 DLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAAT 102
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase,
DNA binding protein, ADP- transferase, PARP-like zinc
finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo
sapiens} PDB: 2cr9_A
Length = 506
Score = 24.9 bits (53), Expect = 8.4
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 22 HLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSS 81
L++ + I F L+ +++ +L N IE A+ ++ +
Sbjct: 215 DLSNRFYTLIPHDFGMKKPPLLNNADSVQAKAEMLDNLLDIEVAY--SLLRGGSDDSSKD 272
Query: 82 PVDMQSYELCCDMVDL 97
P+D+ +L D+ +
Sbjct: 273 PIDVNYEKLKTDIKVV 288
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 24.4 bits (54), Expect = 8.7
Identities = 8/35 (22%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
+ E+ +K +++ + ++ IL+NN+GI
Sbjct: 65 NLLSEESINKAFEEIYNLVDGID----ILVNNAGI 95
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 24.4 bits (54), Expect = 8.7
Identities = 8/35 (22%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
+ + + +I++++ Q +L+ +L+NN+GI
Sbjct: 62 NVADADEVKAMIKEVVSQFGSLD----VLVNNAGI 92
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd;
NAD(P)-binding, structural genomics, PSI-biology; HET:
MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Length = 259
Score = 24.4 bits (54), Expect = 9.0
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 53 LNILINNSGIEKAFLF 68
L+IL+NN+ +
Sbjct: 83 LDILVNNAALFDLAPI 98
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 24.4 bits (54), Expect = 9.0
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 53 LNILINNSGIEKAF 66
++IL++N+ + F
Sbjct: 92 VDILVSNAAVNPFF 105
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus
anthracis}
Length = 246
Score = 24.4 bits (54), Expect = 9.1
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D + E + ++++ + ++ IL+NN+G+
Sbjct: 62 DVANAEDVTNMVKQTVDVFGQVD----ILVNNAGV 92
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 24.4 bits (54), Expect = 9.4
Identities = 6/35 (17%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
Query: 28 DHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGI 62
D + K ++ + +L + ++L+NN+
Sbjct: 55 DVADPLTLKKFVEYAMEKLQRI----DVLVNNACR 85
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 24.5 bits (54), Expect = 9.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 53 LNILINNSGIEKAFLFDVV 71
L+IL+NN+G+ ++
Sbjct: 87 LDILVNNAGVNNEKNWEKT 105
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic
fragment, transferase; HET: BZC; 2.20A {Gallus gallus}
SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A
2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A*
2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Length = 350
Score = 24.3 bits (52), Expect = 9.5
Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 22 HLTSIYDHSIFEAFSKVIQKLIPQLPTLENLLNILINNSGIEKAFLFDVVSKIYIATDSS 81
L++ + I F L+ L ++ + +L N IE A+ ++ D
Sbjct: 70 DLSNRFYTLIPHDFGMKKPPLLSNLEYIQAKVQMLDNLLDIEVAY--SLLRGGNEDGDKD 127
Query: 82 PVDMQSYELCCDMVDL 97
P+D+ +L D+ +
Sbjct: 128 PIDINYEKLRTDIKVV 143
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 24.4 bits (54), Expect = 9.8
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 53 LNILINNSGIEKAFLF 68
L+ + + +G+ + L
Sbjct: 81 LHGVAHFAGVAHSALS 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.406
Gapped
Lambda K H
0.267 0.0850 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,650,852
Number of extensions: 84386
Number of successful extensions: 375
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 76
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.2 bits)