BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9524
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q99K70|RRAGC_MOUSE Ras-related GTP-binding protein C OS=Mus musculus GN=Rragc PE=2
SV=1
Length = 398
Score = 121 bits (303), Expect = 1e-27, Method: Composition-based stats.
Identities = 58/79 (73%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KMSPNETLFLE TNK+ K+DI+NSSF+ +Q+WD PGQMDF D
Sbjct: 66 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 125
Query: 60 -FDAELIFARCGALIFVID 77
FD E+IF GALI+VID
Sbjct: 126 TFDYEMIFRGTGALIYVID 144
>sp|Q9HB90|RRAGC_HUMAN Ras-related GTP-binding protein C OS=Homo sapiens GN=RRAGC PE=1
SV=1
Length = 399
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/79 (73%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KMSPNETLFLE TNK+ K+DI+NSSF+ +Q+WD PGQMDF D
Sbjct: 67 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 126
Query: 60 -FDAELIFARCGALIFVID 77
FD E+IF GALI+VID
Sbjct: 127 TFDYEMIFRGTGALIYVID 145
>sp|Q9NQL2|RRAGD_HUMAN Ras-related GTP-binding protein D OS=Homo sapiens GN=RRAGD PE=1
SV=1
Length = 400
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/80 (71%), Positives = 68/80 (85%), Gaps = 2/80 (2%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KMSPNETLFLE TNK+ +ED++NSSF+ +Q+WD PGQ+DF D
Sbjct: 68 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKICREDVSNSSFVNFQIWDFPGQIDFFDP 127
Query: 60 -FDAELIFARCGALIFVIDT 78
FD E+IF GALIFVID+
Sbjct: 128 TFDYEMIFRGTGALIFVIDS 147
>sp|Q7TT45|RRAGD_MOUSE Ras-related GTP-binding protein D OS=Mus musculus GN=Rragd PE=2
SV=2
Length = 449
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 68/80 (85%), Gaps = 2/80 (2%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KMSP+ETLFLE TN++ +ED++NSSF+ +Q+WD PGQ+DF D
Sbjct: 117 MGLRRSGKSSIQKVVFHKMSPSETLFLESTNRICREDVSNSSFVNFQIWDFPGQIDFFDP 176
Query: 60 -FDAELIFARCGALIFVIDT 78
FD E+IF GALIFVID+
Sbjct: 177 TFDYEMIFRGTGALIFVIDS 196
>sp|O74544|GTR2_SCHPO GTP-binding protein gtr2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gtr2 PE=3 SV=1
Length = 314
Score = 100 bits (249), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/79 (65%), Positives = 62/79 (78%), Gaps = 4/79 (5%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KM PNETLFLE T+K+T++ I SSF+ + +WD PGQ+D D
Sbjct: 9 MGLRRSGKSSIQKVVFYKMPPNETLFLESTSKLTQDHI--SSFIDFSVWDFPGQVDVFDA 66
Query: 60 -FDAELIFARCGALIFVID 77
FD E IF + GALIFVID
Sbjct: 67 AFDFESIFTQVGALIFVID 85
>sp|P53290|GTR2_YEAST GTP-binding protein GTR2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTR2 PE=1 SV=1
Length = 341
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 4/80 (5%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF--Q 58
MG+RR GK+SI KVVF M P +TL+LE T+ + E S+ + + + PGQ+++
Sbjct: 15 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP 72
Query: 59 DFDAELIFARCGALIFVIDT 78
+D+E +F GAL++VID+
Sbjct: 73 SYDSERLFKSVGALVYVIDS 92
>sp|Q54IK1|RRAGA_DICDI Ras-related GTP-binding protein A OS=Dictyostelium discoideum
GN=ragA PE=2 SV=1
Length = 301
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGKTS++ ++F +T+ L T + + L LWDC GQ F +
Sbjct: 8 MGRSESGKTSMRSIIFANYIARDTMRLGVTIDVEHSHVRFLGNLVLNLWDCGGQEGFLES 67
Query: 60 ---FDAELIFARCGALIFVID 77
+ IF LI+V D
Sbjct: 68 YLTTQRDHIFRNVEVLIYVFD 88
>sp|O74824|GTR1_SCHPO GTP-binding protein gtr1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=gtr1 PE=3 SV=1
Length = 308
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGK+S++ +VF +T L T + + L LWDC GQ F +
Sbjct: 8 MGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEAFMEN 67
Query: 60 ---FDAELIFARCGALIFVID 77
+ IF LI+V D
Sbjct: 68 YLSAQRDHIFRNVQVLIYVFD 88
>sp|Q63486|RRAGA_RAT Ras-related GTP-binding protein A OS=Rattus norvegicus GN=Rraga
PE=1 SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGKTS++ ++F +T L T + + L LWDC GQ F +
Sbjct: 13 MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMEN 72
Query: 60 -FDAEL--IFARCGALIFVID 77
F ++ IF LI+V D
Sbjct: 73 YFTSQRDNIFRNVEVLIYVFD 93
>sp|Q80X95|RRAGA_MOUSE Ras-related GTP-binding protein A OS=Mus musculus GN=Rraga PE=2
SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGKTS++ ++F +T L T + + L LWDC GQ F +
Sbjct: 13 MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMEN 72
Query: 60 -FDAEL--IFARCGALIFVID 77
F ++ IF LI+V D
Sbjct: 73 YFTSQRDNIFRNVEVLIYVFD 93
>sp|Q7L523|RRAGA_HUMAN Ras-related GTP-binding protein A OS=Homo sapiens GN=RRAGA PE=1
SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGKTS++ ++F +T L T + + L LWDC GQ F +
Sbjct: 13 MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMEN 72
Query: 60 -FDAEL--IFARCGALIFVID 77
F ++ IF LI+V D
Sbjct: 73 YFTSQRDNIFRNVEVLIYVFD 93
>sp|Q3SX43|RRAGA_BOVIN Ras-related GTP-binding protein A OS=Bos taurus GN=RRAGA PE=2
SV=1
Length = 313
Score = 35.8 bits (81), Expect = 0.072, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGKTS++ ++F +T L T + + L LWDC GQ F +
Sbjct: 13 MGKSGSGKTSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQDTFMEN 72
Query: 60 -FDAEL--IFARCGALIFVID 77
F ++ IF LI+V D
Sbjct: 73 YFTSQRDNIFRNVEVLIYVFD 93
>sp|O94655|YPT7_SCHPO GTP-binding protein ypt7 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ypt7 PE=3 SV=1
Length = 205
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 1 MGLRRSGKTSI-QKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD 59
+G GKTSI + V +K S + + G + +TKE + + + QLWD GQ FQ
Sbjct: 14 LGESGVGKTSIMNQYVNRKFSKDYKATI-GADFLTKEVLVDDKVVTLQLWDTAGQERFQS 72
Query: 60 FDAELIF-ARCGALIFVIDTS 79
A C L++ ++ S
Sbjct: 73 LGVAFYRGADCCVLVYDVNNS 93
>sp|Q54I24|ARFD_DICDI ADP-ribosylation factor D OS=Dictyostelium discoideum GN=arrD
PE=3 SV=2
Length = 216
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+GL SGKT+I K+ NE + T E I + L LWD G+ +
Sbjct: 23 LGLDGSGKTTI----LYKLMLNEVVSTISTLGYNVETIQHK-HLNLTLWDLAGEERIRTL 77
Query: 61 DAELIFARCGALIFVIDTS 79
+ + +C A+IFV+D+S
Sbjct: 78 -WKPFYNKCTAIIFVVDSS 95
>sp|O97572|RAB7A_RABIT Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2
SV=1
Length = 207
Score = 33.1 bits (74), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLSVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|Q5R9Y4|RAB7A_PONAB Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|P51150|RAB7A_MOUSE Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2
Length = 207
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|P51149|RAB7A_HUMAN Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|Q3T0F5|RAB7A_BOVIN Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|P18067|RAB7A_CANFA Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1
Length = 207
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|Q7VRQ8|LEPA_BLOFL Elongation factor 4 OS=Blochmannia floridanus GN=lepA PE=3 SV=1
Length = 599
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 39 ANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
+N F Q L D PG +DF ++ A C + V+D + G
Sbjct: 67 SNEQFYQLNLIDTPGHVDFS-YEVSRALAACEGAVLVVDAAQG 108
>sp|P09527|RAB7A_RAT Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1
SV=2
Length = 207
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIF 74
A C L+F
Sbjct: 80 GADCCVLVF 88
>sp|Q00582|GTR1_YEAST GTP-binding protein GTR1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GTR1 PE=1 SV=1
Length = 310
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
MG SGK+S++ ++F S +T L T + + + LWDC GQ F +
Sbjct: 12 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN 71
Query: 61 ----DAELIFARCGALIFVIDT 78
+ IF LI V D
Sbjct: 72 YFTKQKDHIFQMVQVLIHVFDV 93
>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 OS=Chlamydomonas reinhardtii GN=YPTC5
PE=3 SV=1
Length = 206
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ QK E G + +TKE + + Q+WD GQ FQ +
Sbjct: 20 GKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYR 79
Query: 67 -ARCGALIFVIDTS 79
A C L+F ++ +
Sbjct: 80 GADCCVLVFDVNNA 93
>sp|P36864|YPTV5_VOLCA GTP-binding protein yptV5 OS=Volvox carteri GN=YPTV5 PE=3 SV=1
Length = 205
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ QK E G + +TKE + + Q+WD GQ FQ +
Sbjct: 20 GKTSLMNQYVQKKFTKEYKATIGADFLTKEIEVDDKKVTMQIWDTAGQERFQSLGSAFYR 79
Query: 67 -ARCGALIFVIDTS 79
A C L+F ++ +
Sbjct: 80 GADCCMLVFDVNNA 93
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2
Length = 943
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
Query: 3 LRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKE-------DIANSSFLQYQLWDCP 52
L+ + K +I F + P LF+E KM ++ DIAN + Q+Q+ DCP
Sbjct: 809 LQVAVKNNIDVFYFSTLYPLHVLFVE-DGKMDRQMFLATWKDIANENEAQFQIRDCP 864
>sp|P36411|RAB7A_DICDI Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A
PE=1 SV=1
Length = 203
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE + + + Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIFVIDTS 79
A C L + ++ +
Sbjct: 80 GADCCVLCYDVNVA 93
>sp|P13887|POLN_RRVN Non-structural polyprotein OS=Ross river virus (strain NB5092) PE=2
SV=1
Length = 2479
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
+Q+ ++ P ++ F D D + +R GA IF DT G
Sbjct: 1841 IQFGDFETPDKIQFGDIDFDQFLSRAGAYIFSSDTGPG 1878
>sp|B5EQB5|LEPA_ACIF5 Elongation factor 4 OS=Acidithiobacillus ferrooxidans (strain ATCC
53993) GN=lepA PE=3 SV=1
Length = 600
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 39 ANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
A+ Q+ L D PG +DF ++ A C + V+D S G
Sbjct: 69 ADGQEYQFNLIDTPGHVDFS-YEVSRSLAACEGALLVVDASQG 110
>sp|B7J9J8|LEPA_ACIF2 Elongation factor 4 OS=Acidithiobacillus ferrooxidans (strain ATCC
23270 / DSM 14882 / NCIB 8455) GN=lepA PE=3 SV=1
Length = 600
Score = 30.0 bits (66), Expect = 4.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 39 ANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
A+ Q+ L D PG +DF ++ A C + V+D S G
Sbjct: 69 ADGQEYQFNLIDTPGHVDFS-YEVSRSLAACEGALLVVDASQG 110
>sp|Q948K8|RAG3A_ARATH Ras-related protein RABG3a OS=Arabidopsis thaliana GN=RABG3A PE=2
SV=1
Length = 206
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKTS+ K + G + +TKE + Q+WD GQ FQ
Sbjct: 14 LGDSGVGKTSLMNQYVHKKFSMQYKATIGADFVTKELQIGEKLVTLQIWDTAGQERFQSL 73
Query: 61 DAELIF-ARCGALIFVID 77
A A C AL++ ++
Sbjct: 74 GAAFYRGADCCALVYDVN 91
>sp|Q9XI98|RAG3E_ARATH Ras-related protein RABG3e OS=Arabidopsis thaliana GN=RABG3E PE=2
SV=1
Length = 206
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIFVIDTS 79
A C L++ ++++
Sbjct: 80 GADCCVLVYDVNSA 93
>sp|Q1LTI1|LEPA_BAUCH Elongation factor 4 OS=Baumannia cicadellinicola subsp. Homalodisca
coagulata GN=lepA PE=3 SV=1
Length = 602
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
+S Q L D PG +DF ++ A C + V+D S G
Sbjct: 67 DSQLYQLNLIDTPGHVDFS-YEVSRSLAACEGALLVVDASQG 107
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=17E5.300 PE=3 SV=1
Length = 205
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 7 GKTSI-QKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65
GKTS+ + V +K S + + G + +T+E + + + QLWD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSASYKATI-GADFLTREVLVDDRQVTMQLWDTAGQERFQSLGVAFY 78
Query: 66 F-ARCGALIFVIDTS 79
A C L++ ++ S
Sbjct: 79 RGADCCVLVYDVNNS 93
>sp|Q40787|RAB7_CENCI Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1
Length = 206
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIFVIDT 78
A C L++ +++
Sbjct: 80 GADCCVLVYDVNS 92
>sp|Q9LS94|RAG3F_ARATH Ras-related protein RABG3f OS=Arabidopsis thaliana GN=RABG3F PE=2
SV=1
Length = 206
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIFVIDT 78
A C L++ +++
Sbjct: 80 GADCCVLVYDVNS 92
>sp|P31022|RAB7_PEA Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1
Length = 206
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
Query: 7 GKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66
GKTS+ K N+ G + +TKE Q+WD GQ FQ
Sbjct: 20 GKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
Query: 67 -ARCGALIFVIDT 78
A C L++ +++
Sbjct: 80 GADCCVLVYDVNS 92
>sp|A7TPD4|GUF1_VANPO Translation factor GUF1, mitochondrial OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=GUF1 PE=3 SV=1
Length = 658
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 30 TNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81
T M D N L D PG +DF+D + + C I ++D S G
Sbjct: 103 TCSMIYNDKRNGQDFLLHLIDTPGHVDFRD-EVSRSYKACNGAILLVDASKG 153
>sp|Q8SQH8|ARF_ENCCU ADP-ribosylation factor OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ARF-1 PE=1 SV=3
Length = 207
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 6/79 (7%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+GL +GKT++ + Q ++T+ G N E++ S +++Q+WD GQ F F
Sbjct: 31 IGLDGAGKTTLL-LYLQTGEVHQTVPTLGFNC---ENVTLGS-MKFQVWDIGGQNSFMRF 85
Query: 61 DAELIFARCGALIFVIDTS 79
+ I CG +I+++D +
Sbjct: 86 WHQYINEGCG-IIYMVDCA 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,377,484
Number of Sequences: 539616
Number of extensions: 864342
Number of successful extensions: 1956
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1912
Number of HSP's gapped (non-prelim): 48
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)