Query psy9524
Match_columns 81
No_of_seqs 163 out of 1132
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 21:49:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 99.9 5.9E-27 1.3E-31 131.4 6.6 78 1-80 15-93 (205)
2 KOG0092|consensus 99.9 3.2E-26 6.9E-31 128.1 6.9 79 1-81 11-90 (200)
3 KOG0094|consensus 99.9 2.1E-25 4.6E-30 125.3 7.2 78 1-80 28-106 (221)
4 KOG0080|consensus 99.9 3.8E-25 8.3E-30 121.4 7.8 78 1-80 17-95 (209)
5 KOG0098|consensus 99.9 8.8E-24 1.9E-28 118.1 6.5 78 1-80 12-90 (216)
6 KOG0394|consensus 99.9 3.6E-24 7.8E-29 119.4 4.7 79 1-81 15-94 (210)
7 cd04120 Rab12 Rab12 subfamily. 99.9 1.9E-23 4.2E-28 119.6 7.6 79 1-81 6-85 (202)
8 KOG0078|consensus 99.9 1.8E-23 4E-28 118.4 6.7 79 1-81 18-97 (207)
9 KOG0079|consensus 99.9 5.3E-23 1.2E-27 111.8 7.2 79 1-81 14-93 (198)
10 KOG0095|consensus 99.9 5.1E-23 1.1E-27 112.2 6.1 77 1-79 13-90 (213)
11 cd01875 RhoG RhoG subfamily. 99.9 2.2E-22 4.8E-27 114.2 7.6 78 1-81 9-87 (191)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 3.7E-22 8.1E-27 112.8 7.6 78 1-81 11-89 (182)
13 cd04133 Rop_like Rop subfamily 99.9 5.7E-22 1.2E-26 111.5 8.0 78 1-81 7-85 (176)
14 KOG0086|consensus 99.9 2.1E-22 4.4E-27 110.1 5.6 78 1-80 15-93 (214)
15 smart00176 RAN Ran (Ras-relate 99.9 1.3E-21 2.8E-26 111.9 8.2 79 1-81 1-80 (200)
16 cd04131 Rnd Rnd subfamily. Th 99.9 1.2E-21 2.5E-26 110.4 7.8 78 1-81 7-85 (178)
17 cd04121 Rab40 Rab40 subfamily. 99.9 1.1E-21 2.5E-26 111.4 7.4 79 1-81 12-91 (189)
18 cd04128 Spg1 Spg1p. Spg1p (se 99.9 1.4E-21 3E-26 110.4 7.7 79 1-81 6-85 (182)
19 cd01874 Cdc42 Cdc42 subfamily. 99.9 1.5E-21 3.3E-26 109.5 7.8 78 1-81 7-85 (175)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 1.4E-21 2.9E-26 114.0 7.5 78 1-81 19-97 (232)
21 cd04124 RabL2 RabL2 subfamily. 99.9 2.4E-21 5.2E-26 107.2 8.1 79 1-81 6-85 (161)
22 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.9E-21 4.1E-26 111.4 7.9 80 1-81 6-90 (202)
23 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 3.5E-21 7.6E-26 109.9 8.4 80 1-81 6-86 (201)
24 KOG0091|consensus 99.9 1.8E-22 3.9E-27 111.2 2.5 80 1-81 14-94 (213)
25 cd04122 Rab14 Rab14 subfamily. 99.9 2.8E-21 6.1E-26 107.2 7.3 79 1-81 8-87 (166)
26 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 2.3E-21 5E-26 112.4 7.1 78 1-81 7-85 (222)
27 KOG0087|consensus 99.9 1.7E-21 3.7E-26 110.6 5.9 78 1-80 20-98 (222)
28 cd01871 Rac1_like Rac1-like su 99.9 4.6E-21 1E-25 107.5 7.6 78 1-81 7-85 (174)
29 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 4.6E-21 1E-25 107.1 7.4 78 1-80 6-84 (170)
30 KOG0093|consensus 99.8 4E-21 8.6E-26 104.4 6.6 79 1-81 27-106 (193)
31 KOG0073|consensus 99.8 2.5E-21 5.4E-26 106.4 5.0 75 1-81 22-96 (185)
32 KOG0070|consensus 99.8 1.3E-21 2.7E-26 109.1 3.7 75 1-81 23-97 (181)
33 PLN03071 GTP-binding nuclear p 99.8 1.3E-20 2.7E-25 109.1 8.0 79 1-81 19-98 (219)
34 cd04109 Rab28 Rab28 subfamily. 99.8 1.3E-20 2.8E-25 108.6 7.7 80 1-81 6-86 (215)
35 cd04136 Rap_like Rap-like subf 99.8 1.4E-20 3E-25 103.7 7.5 78 1-81 7-85 (163)
36 cd04117 Rab15 Rab15 subfamily. 99.8 1.7E-20 3.7E-25 103.9 7.7 79 1-81 6-85 (161)
37 PLN00023 GTP-binding protein; 99.8 1.6E-20 3.4E-25 113.4 8.1 80 1-81 27-119 (334)
38 KOG0088|consensus 99.8 7.9E-22 1.7E-26 108.3 2.0 79 1-81 19-98 (218)
39 cd04176 Rap2 Rap2 subgroup. T 99.8 2.3E-20 5.1E-25 103.0 7.8 78 1-81 7-85 (163)
40 cd04119 RJL RJL (RabJ-Like) su 99.8 1.9E-20 4.1E-25 103.3 7.4 79 1-81 6-85 (168)
41 cd04132 Rho4_like Rho4-like su 99.8 2.7E-20 5.8E-25 104.9 8.0 79 1-81 6-85 (187)
42 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.8 2.6E-20 5.6E-25 104.3 7.5 78 1-81 8-86 (172)
43 cd04134 Rho3 Rho3 subfamily. 99.8 2.8E-20 6E-25 105.4 7.7 78 1-81 6-84 (189)
44 smart00174 RHO Rho (Ras homolo 99.8 3.9E-20 8.5E-25 103.1 8.0 78 1-81 4-82 (174)
45 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 3.5E-20 7.6E-25 102.6 7.5 79 1-81 8-87 (166)
46 cd04161 Arl2l1_Arl13_like Arl2 99.8 2.2E-20 4.7E-25 104.0 6.6 75 1-81 5-79 (167)
47 PLN00223 ADP-ribosylation fact 99.8 1.9E-20 4.1E-25 105.6 6.4 75 1-81 23-97 (181)
48 cd04144 Ras2 Ras2 subfamily. 99.8 2.5E-20 5.4E-25 105.6 6.9 78 1-81 5-83 (190)
49 cd04127 Rab27A Rab27a subfamil 99.8 3.1E-20 6.7E-25 104.0 7.2 80 1-81 10-99 (180)
50 cd04175 Rap1 Rap1 subgroup. T 99.8 4.3E-20 9.4E-25 102.1 7.6 77 1-80 7-84 (164)
51 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.1E-20 9E-25 102.1 7.4 80 1-81 6-88 (164)
52 PTZ00369 Ras-like protein; Pro 99.8 4.1E-20 8.8E-25 104.7 7.5 78 1-81 11-89 (189)
53 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 2.9E-20 6.3E-25 103.3 6.7 75 1-81 5-80 (164)
54 cd01865 Rab3 Rab3 subfamily. 99.8 4.4E-20 9.4E-25 102.4 7.4 79 1-81 7-86 (165)
55 cd04111 Rab39 Rab39 subfamily. 99.8 5.5E-20 1.2E-24 105.9 8.0 80 1-81 8-88 (211)
56 cd04116 Rab9 Rab9 subfamily. 99.8 5.1E-20 1.1E-24 102.3 7.6 79 1-81 11-90 (170)
57 cd00877 Ran Ran (Ras-related n 99.8 9.3E-20 2E-24 101.4 8.4 79 1-81 6-85 (166)
58 cd04149 Arf6 Arf6 subfamily. 99.8 2.7E-20 5.8E-25 103.9 6.1 75 1-81 15-89 (168)
59 cd01867 Rab8_Rab10_Rab13_like 99.8 6E-20 1.3E-24 102.0 7.3 79 1-81 9-88 (167)
60 cd04110 Rab35 Rab35 subfamily. 99.8 7E-20 1.5E-24 104.5 7.7 79 1-81 12-91 (199)
61 cd04150 Arf1_5_like Arf1-Arf5- 99.8 3.8E-20 8.3E-25 102.4 6.3 73 1-80 6-79 (159)
62 KOG0083|consensus 99.8 3.7E-21 8E-26 103.3 2.1 78 1-80 3-82 (192)
63 PF00025 Arf: ADP-ribosylation 99.8 3.5E-20 7.5E-25 104.1 5.9 75 1-81 20-94 (175)
64 cd04138 H_N_K_Ras_like H-Ras/N 99.8 1E-19 2.2E-24 99.9 7.6 77 1-80 7-84 (162)
65 smart00177 ARF ARF-like small 99.8 5.4E-20 1.2E-24 103.2 6.6 74 1-81 19-93 (175)
66 cd01892 Miro2 Miro2 subfamily. 99.8 1.3E-19 2.8E-24 101.1 8.0 79 1-81 10-90 (169)
67 cd04115 Rab33B_Rab33A Rab33B/R 99.8 1.1E-19 2.5E-24 101.2 7.5 79 1-81 8-88 (170)
68 cd04130 Wrch_1 Wrch-1 subfamil 99.8 1.2E-19 2.7E-24 101.3 7.6 78 1-81 6-84 (173)
69 cd04118 Rab24 Rab24 subfamily. 99.8 1.7E-19 3.7E-24 102.1 8.3 79 1-81 6-86 (193)
70 PLN03118 Rab family protein; P 99.8 1.3E-19 2.8E-24 104.1 7.8 79 1-81 20-98 (211)
71 cd04106 Rab23_lke Rab23-like s 99.8 1.3E-19 2.8E-24 99.9 7.4 80 1-81 6-87 (162)
72 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 1.2E-19 2.7E-24 102.3 7.2 79 1-80 9-87 (183)
73 cd01864 Rab19 Rab19 subfamily. 99.8 1.3E-19 2.8E-24 100.4 7.1 79 1-81 9-88 (165)
74 smart00173 RAS Ras subfamily o 99.8 1.5E-19 3.2E-24 99.9 7.3 78 1-81 6-84 (164)
75 cd04113 Rab4 Rab4 subfamily. 99.8 1.8E-19 3.9E-24 99.3 7.6 79 1-81 6-85 (161)
76 cd04140 ARHI_like ARHI subfami 99.8 2.5E-19 5.4E-24 99.4 7.8 78 1-81 7-85 (165)
77 cd04157 Arl6 Arl6 subfamily. 99.8 1.2E-19 2.6E-24 99.9 6.2 76 1-80 5-80 (162)
78 cd04125 RabA_like RabA-like su 99.8 2.4E-19 5.2E-24 101.3 7.5 79 1-81 6-85 (188)
79 cd01866 Rab2 Rab2 subfamily. 99.8 2.5E-19 5.4E-24 99.7 7.4 79 1-81 10-89 (168)
80 cd01861 Rab6 Rab6 subfamily. 99.8 2.6E-19 5.7E-24 98.5 7.3 79 1-81 6-85 (161)
81 cd04145 M_R_Ras_like M-Ras/R-R 99.8 3.7E-19 8E-24 98.1 7.7 78 1-81 8-86 (164)
82 cd01868 Rab11_like Rab11-like. 99.8 3.3E-19 7.2E-24 98.6 7.2 78 1-80 9-87 (165)
83 PTZ00133 ADP-ribosylation fact 99.8 2E-19 4.4E-24 101.5 6.3 73 1-80 23-96 (182)
84 PF00071 Ras: Ras family; Int 99.8 2E-19 4.3E-24 99.1 6.2 79 1-81 5-84 (162)
85 PLN03110 Rab GTPase; Provision 99.8 3.9E-19 8.4E-24 102.7 7.6 79 1-81 18-97 (216)
86 cd04112 Rab26 Rab26 subfamily. 99.8 3.5E-19 7.6E-24 101.0 7.3 78 1-80 6-85 (191)
87 cd04143 Rhes_like Rhes_like su 99.8 3.2E-19 7E-24 104.9 7.1 78 1-81 6-84 (247)
88 cd01862 Rab7 Rab7 subfamily. 99.8 5E-19 1.1E-23 98.2 7.4 78 1-80 6-84 (172)
89 cd04158 ARD1 ARD1 subfamily. 99.8 4.5E-19 9.8E-24 98.8 7.2 75 1-81 5-79 (169)
90 KOG0081|consensus 99.8 1.7E-20 3.7E-25 103.2 1.3 80 1-81 15-103 (219)
91 cd01860 Rab5_related Rab5-rela 99.8 6.3E-19 1.4E-23 97.2 7.5 79 1-81 7-86 (163)
92 cd04177 RSR1 RSR1 subgroup. R 99.8 7.7E-19 1.7E-23 97.6 7.8 78 1-81 7-85 (168)
93 cd04126 Rab20 Rab20 subfamily. 99.8 6.7E-19 1.4E-23 102.1 7.5 74 1-81 6-80 (220)
94 cd01870 RhoA_like RhoA-like su 99.8 8.3E-19 1.8E-23 97.8 7.5 77 1-80 7-84 (175)
95 KOG0097|consensus 99.8 2E-19 4.3E-24 97.6 4.6 78 1-80 17-95 (215)
96 cd04154 Arl2 Arl2 subfamily. 99.8 3.6E-19 7.8E-24 99.4 5.8 75 1-81 20-94 (173)
97 cd04156 ARLTS1 ARLTS1 subfamil 99.8 6.4E-19 1.4E-23 97.0 6.7 76 1-81 5-80 (160)
98 smart00175 RAB Rab subfamily o 99.8 9.4E-19 2E-23 96.4 7.4 79 1-81 6-85 (164)
99 cd04135 Tc10 TC10 subfamily. 99.8 1.4E-18 3.1E-23 96.7 7.7 78 1-81 6-84 (174)
100 cd01863 Rab18 Rab18 subfamily. 99.8 1.8E-18 4E-23 95.2 7.9 79 1-81 6-85 (161)
101 cd04146 RERG_RasL11_like RERG/ 99.8 1.3E-18 2.7E-23 96.4 7.2 78 1-81 5-84 (165)
102 KOG0393|consensus 99.8 2.4E-19 5.3E-24 101.7 4.0 78 1-81 10-89 (198)
103 PLN03108 Rab family protein; P 99.8 1.7E-18 3.8E-23 99.5 7.5 79 1-81 12-91 (210)
104 cd04160 Arfrp1 Arfrp1 subfamil 99.8 8.3E-19 1.8E-23 97.1 5.8 78 1-80 5-85 (167)
105 cd00157 Rho Rho (Ras homology) 99.8 3.4E-18 7.4E-23 94.8 8.0 77 1-80 6-83 (171)
106 cd01873 RhoBTB RhoBTB subfamil 99.8 2.7E-18 5.8E-23 98.0 7.5 78 1-81 8-100 (195)
107 PTZ00132 GTP-binding nuclear p 99.8 3.3E-18 7.2E-23 98.5 7.9 78 1-80 15-93 (215)
108 cd04151 Arl1 Arl1 subfamily. 99.8 1.3E-18 2.8E-23 95.8 5.9 74 1-80 5-78 (158)
109 PF08477 Miro: Miro-like prote 99.8 1.3E-18 2.9E-23 91.9 5.7 79 1-81 5-86 (119)
110 cd04123 Rab21 Rab21 subfamily. 99.8 3.2E-18 6.8E-23 94.0 7.3 79 1-81 6-85 (162)
111 KOG0071|consensus 99.8 8E-19 1.7E-23 94.8 4.1 74 1-80 23-96 (180)
112 cd04147 Ras_dva Ras-dva subfam 99.8 3.6E-18 7.7E-23 97.4 7.0 78 1-81 5-83 (198)
113 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3E-18 6.5E-23 95.9 6.3 75 1-81 21-95 (174)
114 COG1100 GTPase SAR1 and relate 99.8 3.6E-18 7.7E-23 98.2 6.8 78 1-80 11-89 (219)
115 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 2.8E-18 6.1E-23 100.0 6.3 80 1-80 5-88 (232)
116 cd04114 Rab30 Rab30 subfamily. 99.8 7.1E-18 1.5E-22 93.5 7.7 78 1-80 13-91 (169)
117 cd01893 Miro1 Miro1 subfamily. 99.8 5.9E-18 1.3E-22 94.0 7.3 77 1-81 6-83 (166)
118 smart00178 SAR Sar1p-like memb 99.8 3.2E-18 6.9E-23 96.7 6.3 75 1-81 23-97 (184)
119 KOG0074|consensus 99.8 1.8E-18 3.8E-23 93.6 4.9 76 1-81 23-98 (185)
120 cd04142 RRP22 RRP22 subfamily. 99.8 9.1E-18 2E-22 95.9 8.0 80 1-81 6-93 (198)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.7 3.9E-18 8.5E-23 93.7 5.9 75 1-81 5-79 (158)
122 cd04103 Centaurin_gamma Centau 99.7 1.2E-17 2.6E-22 92.5 7.7 72 1-81 6-78 (158)
123 cd00154 Rab Rab family. Rab G 99.7 9.8E-18 2.1E-22 91.3 7.2 78 1-80 6-84 (159)
124 cd04159 Arl10_like Arl10-like 99.7 5.7E-18 1.2E-22 92.3 5.5 75 1-80 5-79 (159)
125 KOG0075|consensus 99.7 9.8E-19 2.1E-23 95.1 2.3 76 1-81 26-101 (186)
126 cd04139 RalA_RalB RalA/RalB su 99.7 1.6E-17 3.4E-22 91.4 7.1 78 1-81 6-84 (164)
127 cd00876 Ras Ras family. The R 99.7 2.2E-17 4.8E-22 90.4 6.7 78 1-81 5-83 (160)
128 cd04171 SelB SelB subfamily. 99.7 1.6E-17 3.4E-22 91.4 5.6 77 1-80 6-86 (164)
129 cd04137 RheB Rheb (Ras Homolog 99.7 4.4E-17 9.5E-22 91.3 7.1 77 1-80 7-84 (180)
130 cd00879 Sar1 Sar1 subfamily. 99.7 2.9E-17 6.2E-22 92.8 6.1 74 1-80 25-98 (190)
131 cd04105 SR_beta Signal recogni 99.7 5.4E-17 1.2E-21 93.1 6.9 77 1-80 6-84 (203)
132 cd04148 RGK RGK subfamily. Th 99.7 7.6E-17 1.7E-21 93.5 7.5 77 1-81 6-85 (221)
133 cd04129 Rho2 Rho2 subfamily. 99.7 2E-16 4.2E-21 89.5 8.2 77 1-80 7-84 (187)
134 cd01891 TypA_BipA TypA (tyrosi 99.7 9.5E-17 2.1E-21 91.2 5.5 78 1-80 8-100 (194)
135 cd04155 Arl3 Arl3 subfamily. 99.7 1.7E-16 3.6E-21 88.3 6.3 74 1-80 20-93 (173)
136 cd01890 LepA LepA subfamily. 99.7 1.3E-16 2.9E-21 89.1 5.6 40 40-80 63-102 (179)
137 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.7E-16 7.9E-21 86.4 6.3 77 1-80 6-85 (168)
138 cd00882 Ras_like_GTPase Ras-li 99.6 2.2E-15 4.9E-20 80.8 7.4 79 1-81 2-81 (157)
139 KOG0395|consensus 99.6 5.2E-16 1.1E-20 88.7 4.9 78 1-81 9-87 (196)
140 KOG0076|consensus 99.6 2.3E-16 5E-21 87.7 2.5 79 1-81 23-105 (197)
141 cd01879 FeoB Ferrous iron tran 99.6 3.6E-15 7.7E-20 81.7 7.2 77 1-80 2-86 (158)
142 cd01898 Obg Obg subfamily. Th 99.6 5.6E-15 1.2E-19 81.9 6.7 76 1-81 6-91 (170)
143 KOG0072|consensus 99.6 4.5E-16 9.7E-21 84.5 1.9 74 1-80 24-97 (182)
144 cd01894 EngA1 EngA1 subfamily. 99.6 6.9E-15 1.5E-19 80.3 6.6 78 1-80 3-88 (157)
145 cd01881 Obg_like The Obg-like 99.6 1E-14 2.2E-19 81.1 6.9 76 1-80 2-86 (176)
146 TIGR00231 small_GTP small GTP- 99.6 1.4E-14 3E-19 78.5 7.3 77 1-79 7-84 (161)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.7E-14 3.8E-19 90.7 7.5 80 1-81 209-295 (442)
148 PRK15494 era GTPase Era; Provi 99.6 8.4E-15 1.8E-19 89.5 5.4 78 1-80 58-143 (339)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.5 4.1E-14 8.9E-19 77.1 7.0 78 1-80 7-92 (157)
150 TIGR02528 EutP ethanolamine ut 99.5 9.8E-15 2.1E-19 79.1 4.3 65 1-81 6-75 (142)
151 PRK03003 GTP-binding protein D 99.5 2.1E-14 4.5E-19 90.9 6.3 78 1-80 44-129 (472)
152 TIGR03156 GTP_HflX GTP-binding 99.5 1.7E-14 3.8E-19 88.5 5.6 77 1-81 195-281 (351)
153 cd00881 GTP_translation_factor 99.5 3E-14 6.4E-19 79.9 6.1 78 1-80 5-97 (189)
154 cd00880 Era_like Era (E. coli 99.5 8.7E-14 1.9E-18 75.4 7.4 81 1-81 2-88 (163)
155 cd01878 HflX HflX subfamily. 99.5 3.1E-14 6.8E-19 81.3 5.8 75 1-81 47-133 (204)
156 cd01897 NOG NOG1 is a nucleola 99.5 7.9E-14 1.7E-18 77.2 6.8 78 1-80 6-91 (168)
157 TIGR00487 IF-2 translation ini 99.5 7.9E-14 1.7E-18 90.2 7.7 77 1-80 93-170 (587)
158 TIGR00436 era GTP-binding prot 99.5 6.7E-14 1.4E-18 83.3 6.7 79 1-80 6-91 (270)
159 KOG4252|consensus 99.5 6.6E-16 1.4E-20 86.6 -2.0 78 1-80 26-104 (246)
160 PRK05291 trmE tRNA modificatio 99.5 7.6E-14 1.6E-18 88.0 6.8 77 1-81 221-307 (449)
161 PRK03003 GTP-binding protein D 99.5 4E-14 8.7E-19 89.6 5.3 78 1-81 217-306 (472)
162 PRK00093 GTP-binding protein D 99.5 8.1E-14 1.8E-18 87.3 6.1 78 1-80 7-92 (435)
163 cd04168 TetM_like Tet(M)-like 99.5 1.3E-13 2.8E-18 80.8 5.8 78 1-80 5-99 (237)
164 cd04169 RF3 RF3 subfamily. Pe 99.5 1.3E-13 2.8E-18 82.1 5.7 78 1-80 8-106 (267)
165 TIGR01393 lepA GTP-binding pro 99.5 1.7E-13 3.7E-18 88.8 6.6 79 1-80 9-105 (595)
166 cd04167 Snu114p Snu114p subfam 99.5 2E-13 4.4E-18 78.7 6.1 39 41-80 68-106 (213)
167 TIGR00491 aIF-2 translation in 99.5 1.7E-13 3.8E-18 88.6 6.4 79 1-80 10-104 (590)
168 KOG1673|consensus 99.5 3.9E-14 8.5E-19 78.0 2.8 79 1-81 26-105 (205)
169 CHL00189 infB translation init 99.5 2E-13 4.3E-18 90.0 6.4 79 1-80 250-330 (742)
170 cd01896 DRG The developmentall 99.5 2.8E-13 6.1E-18 79.2 6.5 78 1-80 6-89 (233)
171 cd04163 Era Era subfamily. Er 99.5 5.4E-13 1.2E-17 73.0 7.1 80 1-81 9-95 (168)
172 cd01889 SelB_euk SelB subfamil 99.4 1.6E-13 3.5E-18 77.9 4.6 79 1-80 6-103 (192)
173 cd01895 EngA2 EngA2 subfamily. 99.4 3E-13 6.5E-18 74.6 5.6 80 1-81 8-97 (174)
174 PRK05306 infB translation init 99.4 6.1E-13 1.3E-17 88.2 7.8 76 1-80 296-372 (787)
175 KOG4423|consensus 99.4 7.4E-16 1.6E-20 86.7 -5.0 80 1-81 31-111 (229)
176 TIGR03594 GTPase_EngA ribosome 99.4 2.5E-13 5.3E-18 84.9 5.5 78 1-80 5-90 (429)
177 TIGR00475 selB selenocysteine- 99.4 3.8E-13 8.2E-18 87.0 6.1 76 1-80 6-85 (581)
178 PTZ00099 rab6; Provisional 99.4 6.4E-13 1.4E-17 74.9 5.9 63 17-81 3-65 (176)
179 KOG3883|consensus 99.4 1.1E-12 2.4E-17 72.2 6.5 80 1-81 15-97 (198)
180 PRK00089 era GTPase Era; Revie 99.4 4.4E-13 9.6E-18 80.4 5.2 78 1-80 11-96 (292)
181 TIGR03594 GTPase_EngA ribosome 99.4 1.1E-12 2.4E-17 82.1 7.1 78 1-81 178-267 (429)
182 PRK10218 GTP-binding protein; 99.4 1.4E-12 3E-17 84.7 7.7 78 1-80 11-103 (607)
183 cd01888 eIF2_gamma eIF2-gamma 99.4 1.4E-12 3E-17 74.8 6.7 36 44-80 83-118 (203)
184 PRK04213 GTP-binding protein; 99.4 6.6E-13 1.4E-17 75.6 5.1 73 1-80 15-102 (201)
185 TIGR03598 GTPase_YsxC ribosome 99.4 8.6E-13 1.9E-17 74.2 5.4 75 1-80 24-112 (179)
186 PRK00454 engB GTP-binding prot 99.4 9.8E-13 2.1E-17 74.5 5.7 75 1-80 30-118 (196)
187 PF09439 SRPRB: Signal recogni 99.4 3.3E-13 7.1E-18 76.3 3.5 75 1-79 9-86 (181)
188 PRK09518 bifunctional cytidyla 99.4 1.2E-12 2.6E-17 86.4 6.6 78 1-80 281-366 (712)
189 PRK04004 translation initiatio 99.4 1.1E-12 2.5E-17 84.9 6.3 79 1-80 12-106 (586)
190 PRK11058 GTPase HflX; Provisio 99.4 1E-12 2.2E-17 82.5 5.8 79 1-81 203-289 (426)
191 cd04166 CysN_ATPS CysN_ATPS su 99.4 6.7E-13 1.5E-17 76.4 4.6 39 41-80 74-112 (208)
192 PRK12299 obgE GTPase CgtA; Rev 99.4 1.6E-12 3.6E-17 79.5 6.5 76 1-80 164-248 (335)
193 cd01899 Ygr210 Ygr210 subfamil 99.4 3.1E-12 6.6E-17 77.8 7.6 78 1-79 4-110 (318)
194 PRK09518 bifunctional cytidyla 99.4 1.1E-12 2.5E-17 86.4 5.3 77 1-80 456-544 (712)
195 PRK15467 ethanolamine utilizat 99.4 9.2E-13 2E-17 73.0 4.1 65 1-80 7-76 (158)
196 PRK05433 GTP-binding protein L 99.4 2.2E-12 4.8E-17 83.8 6.1 40 40-80 70-109 (600)
197 TIGR00437 feoB ferrous iron tr 99.3 5.7E-12 1.2E-16 81.8 7.6 77 2-80 1-84 (591)
198 PRK00093 GTP-binding protein D 99.3 2.9E-12 6.4E-17 80.3 6.0 78 1-81 179-268 (435)
199 COG2229 Predicted GTPase [Gene 99.3 3.6E-12 7.8E-17 71.6 5.6 80 1-81 16-104 (187)
200 cd04170 EF-G_bact Elongation f 99.3 3E-12 6.6E-17 76.1 5.5 78 1-80 5-99 (268)
201 TIGR02729 Obg_CgtA Obg family 99.3 4E-12 8.6E-17 77.6 6.0 75 1-80 163-247 (329)
202 cd01885 EF2 EF2 (for archaea a 99.3 3.2E-12 7E-17 74.4 5.4 39 41-80 70-108 (222)
203 PF01926 MMR_HSR1: 50S ribosom 99.3 3.3E-12 7.1E-17 67.3 5.0 77 1-80 5-91 (116)
204 PRK12317 elongation factor 1-a 99.3 5.1E-12 1.1E-16 79.3 6.5 39 41-80 81-119 (425)
205 KOG3887|consensus 99.3 9.8E-13 2.1E-17 77.2 2.8 80 1-81 33-114 (347)
206 PRK12297 obgE GTPase CgtA; Rev 99.3 1.2E-11 2.5E-16 77.7 6.8 75 1-80 164-248 (424)
207 KOG0077|consensus 99.3 1.2E-12 2.6E-17 72.7 1.9 74 1-80 26-99 (193)
208 COG1159 Era GTPase [General fu 99.3 5.9E-12 1.3E-16 75.3 4.6 78 1-80 12-97 (298)
209 COG0486 ThdF Predicted GTPase 99.3 1.5E-11 3.3E-16 77.1 6.6 79 1-80 223-308 (454)
210 TIGR00483 EF-1_alpha translati 99.3 8.8E-12 1.9E-16 78.2 5.6 40 41-81 82-121 (426)
211 PRK13351 elongation factor G; 99.3 5.2E-12 1.1E-16 83.1 4.7 78 1-80 14-108 (687)
212 KOG0096|consensus 99.3 8.4E-12 1.8E-16 70.6 4.9 78 1-80 16-94 (216)
213 PRK00741 prfC peptide chain re 99.3 1.2E-11 2.5E-16 79.5 5.6 39 41-80 76-114 (526)
214 cd01886 EF-G Elongation factor 99.3 1.7E-11 3.7E-16 73.2 5.9 78 1-80 5-99 (270)
215 TIGR01394 TypA_BipA GTP-bindin 99.3 1.5E-11 3.3E-16 79.9 6.0 78 1-80 7-99 (594)
216 PRK12296 obgE GTPase CgtA; Rev 99.2 1.2E-11 2.6E-16 78.8 5.0 78 1-80 165-248 (500)
217 PRK10512 selenocysteinyl-tRNA- 99.2 3.3E-11 7.1E-16 78.6 6.8 77 1-80 6-86 (614)
218 PRK09602 translation-associate 99.2 5.7E-11 1.2E-15 74.1 7.4 78 1-79 7-113 (396)
219 TIGR00503 prfC peptide chain r 99.2 5E-11 1.1E-15 76.6 7.3 39 41-80 77-115 (527)
220 cd01876 YihA_EngB The YihA (En 99.2 4.1E-11 8.9E-16 65.7 5.4 75 1-80 5-93 (170)
221 PRK09554 feoB ferrous iron tra 99.2 1.1E-10 2.3E-15 77.8 8.0 78 1-80 9-97 (772)
222 PF00009 GTP_EFTU: Elongation 99.2 1.9E-11 4.2E-16 69.2 3.6 79 1-80 9-105 (188)
223 cd01883 EF1_alpha Eukaryotic e 99.2 4.8E-11 1E-15 69.2 5.2 39 41-80 74-112 (219)
224 TIGR03680 eif2g_arch translati 99.2 4.1E-11 9E-16 74.9 4.5 37 43-80 79-115 (406)
225 KOG3886|consensus 99.2 6.9E-12 1.5E-16 73.1 0.8 80 1-80 10-93 (295)
226 PF02421 FeoB_N: Ferrous iron 99.2 1.8E-10 4E-15 63.9 6.2 78 1-80 6-90 (156)
227 PRK12298 obgE GTPase CgtA; Rev 99.1 1.2E-10 2.6E-15 72.6 5.5 78 1-79 165-248 (390)
228 TIGR00490 aEF-2 translation el 99.1 1E-10 2.2E-15 77.5 5.2 39 41-80 83-121 (720)
229 cd04104 p47_IIGP_like p47 (47- 99.1 2.6E-10 5.6E-15 65.2 6.2 76 1-77 7-89 (197)
230 KOG1423|consensus 99.1 2.7E-10 5.8E-15 68.9 6.3 79 1-80 78-167 (379)
231 TIGR00484 EF-G translation elo 99.1 2.6E-10 5.6E-15 75.3 6.5 78 1-80 16-110 (689)
232 COG3596 Predicted GTPase [Gene 99.1 9.5E-11 2.1E-15 69.7 3.7 76 1-81 45-130 (296)
233 PRK12740 elongation factor G; 99.1 2.8E-10 6.1E-15 74.8 5.7 78 1-80 1-95 (668)
234 TIGR00485 EF-Tu translation el 99.1 2.9E-10 6.2E-15 70.9 5.4 78 1-80 18-110 (394)
235 cd01884 EF_Tu EF-Tu subfamily. 99.1 3.9E-10 8.5E-15 64.5 5.5 78 1-80 8-100 (195)
236 PRK04000 translation initiatio 99.1 1.7E-10 3.7E-15 72.3 4.3 36 44-80 85-120 (411)
237 cd01850 CDC_Septin CDC/Septin. 99.1 7.6E-10 1.7E-14 66.3 6.9 54 1-54 10-73 (276)
238 COG1163 DRG Predicted GTPase [ 99.1 4.3E-10 9.4E-15 68.3 5.6 75 1-80 69-152 (365)
239 PRK12735 elongation factor Tu; 99.0 1E-09 2.2E-14 68.6 5.9 78 1-80 18-110 (396)
240 TIGR00991 3a0901s02IAP34 GTP-b 99.0 2.2E-09 4.8E-14 65.1 7.0 77 1-78 44-128 (313)
241 cd01853 Toc34_like Toc34-like 99.0 3.8E-09 8.2E-14 62.6 7.6 77 1-78 37-124 (249)
242 PRK12736 elongation factor Tu; 99.0 1.5E-09 3.2E-14 67.8 5.6 78 1-80 18-110 (394)
243 COG1160 Predicted GTPases [Gen 99.0 1.5E-09 3.2E-14 68.2 4.9 80 1-81 184-273 (444)
244 PRK12739 elongation factor G; 99.0 1.6E-09 3.4E-14 71.7 5.3 78 1-80 14-108 (691)
245 CHL00071 tufA elongation facto 99.0 2.1E-09 4.6E-14 67.4 5.6 78 1-80 18-110 (409)
246 PLN03126 Elongation factor Tu; 99.0 1.6E-09 3.4E-14 69.1 5.1 78 1-80 87-179 (478)
247 COG1084 Predicted GTPase [Gene 98.9 3.6E-09 7.8E-14 64.3 6.1 77 2-80 175-259 (346)
248 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.9E-09 6.3E-14 58.0 4.3 50 1-54 89-138 (141)
249 cd01852 AIG1 AIG1 (avrRpt2-ind 98.9 9.6E-09 2.1E-13 58.6 6.4 79 1-80 6-95 (196)
250 cd01900 YchF YchF subfamily. 98.9 6.2E-09 1.3E-13 62.4 5.7 77 1-79 4-103 (274)
251 TIGR02034 CysN sulfate adenyly 98.9 3.9E-09 8.4E-14 66.2 4.8 39 41-80 77-115 (406)
252 PRK05124 cysN sulfate adenylyl 98.9 8.6E-09 1.9E-13 65.8 6.3 39 41-80 104-142 (474)
253 cd04165 GTPBP1_like GTPBP1-lik 98.9 5.5E-09 1.2E-13 61.0 4.9 37 43-80 83-121 (224)
254 PRK00049 elongation factor Tu; 98.8 5.9E-09 1.3E-13 65.2 4.8 78 1-80 18-110 (396)
255 COG1160 Predicted GTPases [Gen 98.8 3E-09 6.6E-14 66.8 3.5 77 1-80 9-95 (444)
256 PTZ00258 GTP-binding protein; 98.8 9.2E-09 2E-13 64.2 5.5 77 1-79 27-126 (390)
257 KOG1191|consensus 98.8 6.3E-09 1.4E-13 66.0 4.7 77 1-78 274-358 (531)
258 PLN03127 Elongation factor Tu; 98.8 2.1E-08 4.6E-13 63.7 6.7 78 1-80 67-159 (447)
259 PTZ00141 elongation factor 1- 98.8 1.2E-08 2.6E-13 64.7 5.5 39 41-80 82-120 (446)
260 PLN00043 elongation factor 1-a 98.8 1E-08 2.2E-13 65.1 5.2 39 41-80 82-120 (447)
261 COG0218 Predicted GTPase [Gene 98.8 1.2E-08 2.6E-13 58.4 4.8 75 1-80 30-118 (200)
262 KOG0090|consensus 98.8 3.8E-09 8.3E-14 61.0 2.7 72 1-79 44-119 (238)
263 cd01859 MJ1464 MJ1464. This f 98.8 1.9E-08 4E-13 55.5 4.6 49 1-53 107-155 (156)
264 PF10662 PduV-EutP: Ethanolami 98.8 1.8E-08 3.9E-13 55.2 4.5 65 1-81 7-76 (143)
265 PRK05506 bifunctional sulfate 98.8 1.8E-08 3.9E-13 66.2 5.0 39 41-80 101-139 (632)
266 PRK00007 elongation factor G; 98.7 2.5E-08 5.4E-13 66.2 5.5 78 1-80 16-110 (693)
267 PRK09601 GTP-binding protein Y 98.7 8.8E-08 1.9E-12 59.4 7.3 77 1-79 8-107 (364)
268 cd01882 BMS1 Bms1. Bms1 is an 98.7 5.9E-08 1.3E-12 56.7 5.9 71 1-80 45-115 (225)
269 KOG1707|consensus 98.7 3E-08 6.5E-13 64.1 4.7 77 1-81 15-92 (625)
270 PF04548 AIG1: AIG1 family; I 98.7 3.8E-08 8.1E-13 57.0 4.3 78 1-79 6-94 (212)
271 PF05049 IIGP: Interferon-indu 98.7 2E-08 4.3E-13 62.4 3.1 74 1-77 41-123 (376)
272 cd01858 NGP_1 NGP-1. Autoanti 98.7 5.4E-08 1.2E-12 53.8 4.4 49 1-53 108-156 (157)
273 cd00066 G-alpha G protein alph 98.6 9.3E-08 2E-12 58.4 5.6 51 28-80 146-196 (317)
274 smart00275 G_alpha G protein a 98.6 1E-07 2.2E-12 58.8 5.7 53 26-80 167-219 (342)
275 cd01856 YlqF YlqF. Proteins o 98.6 6.7E-08 1.5E-12 54.1 4.3 50 1-54 121-170 (171)
276 PTZ00416 elongation factor 2; 98.6 8.8E-08 1.9E-12 64.7 4.9 38 42-80 90-127 (836)
277 PLN00116 translation elongatio 98.6 6.5E-08 1.4E-12 65.4 4.2 38 42-80 96-133 (843)
278 PRK14845 translation initiatio 98.6 1.1E-07 2.5E-12 65.3 5.2 35 45-80 527-561 (1049)
279 cd04178 Nucleostemin_like Nucl 98.6 1.1E-07 2.3E-12 53.6 4.4 49 1-53 123-171 (172)
280 cd01855 YqeH YqeH. YqeH is an 98.6 5.9E-08 1.3E-12 55.1 3.3 18 1-18 133-150 (190)
281 TIGR03596 GTPase_YlqF ribosome 98.5 2.3E-07 4.9E-12 55.7 4.6 50 1-54 124-173 (276)
282 KOG1489|consensus 98.5 4.7E-07 1E-11 55.3 5.9 76 1-80 202-286 (366)
283 PRK07560 elongation factor EF- 98.5 1.5E-07 3.1E-12 62.9 4.1 39 41-80 84-122 (731)
284 PRK09563 rbgA GTPase YlqF; Rev 98.5 3.3E-07 7.2E-12 55.3 5.1 51 1-55 127-177 (287)
285 PF05783 DLIC: Dynein light in 98.5 4.7E-07 1E-11 57.9 5.7 79 1-81 31-113 (472)
286 COG5256 TEF1 Translation elong 98.5 3.4E-07 7.3E-12 57.4 4.7 39 41-80 82-120 (428)
287 COG1161 Predicted GTPases [Gen 98.5 2.7E-07 5.8E-12 56.6 4.1 51 1-55 138-188 (322)
288 COG0370 FeoB Fe2+ transport sy 98.4 1.3E-06 2.8E-11 57.5 7.0 77 1-80 9-93 (653)
289 TIGR00993 3a0901s04IAP86 chlor 98.4 1.9E-06 4.1E-11 57.2 7.6 78 1-79 124-212 (763)
290 KOG0462|consensus 98.4 6.6E-07 1.4E-11 57.9 5.4 40 40-80 121-160 (650)
291 PF00735 Septin: Septin; Inte 98.4 7.3E-07 1.6E-11 53.8 5.0 53 1-53 10-72 (281)
292 cd01851 GBP Guanylate-binding 98.4 2.2E-06 4.7E-11 50.2 6.1 78 1-78 13-101 (224)
293 PRK12289 GTPase RsgA; Reviewed 98.4 8.8E-07 1.9E-11 54.9 4.6 18 1-18 178-195 (352)
294 PRK12288 GTPase RsgA; Reviewed 98.4 1.1E-06 2.4E-11 54.4 4.9 18 1-18 211-228 (347)
295 TIGR00157 ribosome small subun 98.3 1.1E-06 2.5E-11 52.0 4.7 18 1-18 126-143 (245)
296 KOG0468|consensus 98.3 2.4E-06 5.2E-11 56.7 6.3 78 1-80 134-232 (971)
297 PF03193 DUF258: Protein of un 98.3 2.4E-07 5.1E-12 51.8 1.4 18 1-18 41-58 (161)
298 cd01849 YlqF_related_GTPase Yl 98.3 1.1E-06 2.5E-11 48.4 4.1 49 1-53 106-154 (155)
299 COG0532 InfB Translation initi 98.3 2.2E-06 4.8E-11 55.1 5.4 79 1-80 11-90 (509)
300 PF00350 Dynamin_N: Dynamin fa 98.3 1.3E-06 2.8E-11 48.4 4.0 36 44-80 101-140 (168)
301 smart00010 small_GTPase Small 98.3 1.1E-06 2.5E-11 46.1 3.6 15 1-15 6-20 (124)
302 cd01854 YjeQ_engC YjeQ/EngC. 98.3 9.6E-07 2.1E-11 53.3 3.1 20 1-20 167-186 (287)
303 COG1217 TypA Predicted membran 98.3 3.4E-06 7.4E-11 54.0 5.5 40 40-80 64-103 (603)
304 TIGR00092 GTP-binding protein 98.2 5E-06 1.1E-10 51.9 6.1 78 1-80 8-109 (368)
305 PRK00098 GTPase RsgA; Reviewed 98.2 4.7E-06 1E-10 50.6 5.5 20 1-20 170-189 (298)
306 COG1162 Predicted GTPases [Gen 98.2 2.9E-06 6.2E-11 51.5 4.4 17 1-17 170-186 (301)
307 PF03029 ATP_bind_1: Conserved 98.2 7.5E-07 1.6E-11 52.6 1.7 34 45-79 92-133 (238)
308 KOG1707|consensus 98.2 6.7E-06 1.5E-10 53.6 5.9 77 1-81 431-508 (625)
309 TIGR03597 GTPase_YqeH ribosome 98.2 3.4E-06 7.4E-11 52.5 4.0 18 1-18 160-177 (360)
310 PRK13796 GTPase YqeH; Provisio 98.1 3E-06 6.4E-11 52.8 3.7 18 1-18 166-183 (365)
311 COG0481 LepA Membrane GTPase L 98.1 1.2E-05 2.6E-10 51.7 6.1 40 40-80 72-111 (603)
312 KOG3905|consensus 98.1 6.1E-06 1.3E-10 51.0 4.4 79 1-81 58-140 (473)
313 COG2262 HflX GTPases [General 98.1 7.7E-06 1.7E-10 51.4 4.5 75 1-81 198-284 (411)
314 COG0012 Predicted GTPase, prob 98.1 2E-05 4.4E-10 49.1 6.3 80 1-80 8-109 (372)
315 COG0480 FusA Translation elong 98.1 1.5E-05 3.2E-10 53.3 5.7 37 43-80 75-111 (697)
316 KOG1486|consensus 98.0 1.7E-05 3.7E-10 47.6 5.3 75 1-80 68-151 (364)
317 COG0536 Obg Predicted GTPase [ 98.0 1.7E-05 3.8E-10 49.0 5.3 76 1-80 165-249 (369)
318 COG5192 BMS1 GTP-binding prote 98.0 8.5E-06 1.8E-10 53.6 4.1 70 1-79 75-144 (1077)
319 PTZ00327 eukaryotic translatio 98.0 6.5E-06 1.4E-10 52.7 3.4 36 44-80 117-152 (460)
320 COG4108 PrfC Peptide chain rel 98.0 6.1E-06 1.3E-10 52.5 3.2 39 40-79 77-115 (528)
321 KOG1424|consensus 97.9 8.5E-06 1.8E-10 52.5 3.0 51 1-55 320-370 (562)
322 COG1116 TauB ABC-type nitrate/ 97.9 6.8E-06 1.5E-10 48.7 2.3 22 1-22 35-56 (248)
323 KOG1491|consensus 97.9 4.8E-05 1E-09 47.2 5.8 80 1-80 26-126 (391)
324 COG1117 PstB ABC-type phosphat 97.9 1.2E-05 2.5E-10 47.1 2.9 16 1-16 39-54 (253)
325 COG3842 PotA ABC-type spermidi 97.9 9.7E-06 2.1E-10 50.3 2.3 22 1-22 37-58 (352)
326 COG1126 GlnQ ABC-type polar am 97.9 1.2E-05 2.6E-10 47.1 2.3 18 1-18 34-51 (240)
327 COG3839 MalK ABC-type sugar tr 97.8 1.2E-05 2.6E-10 49.7 2.3 22 1-22 35-56 (338)
328 smart00053 DYNc Dynamin, GTPas 97.8 9.4E-05 2E-09 43.9 5.9 18 1-18 32-49 (240)
329 KOG0705|consensus 97.8 1.8E-05 3.9E-10 51.7 3.0 71 1-80 36-107 (749)
330 COG5019 CDC3 Septin family pro 97.8 5.2E-05 1.1E-09 47.2 4.8 54 1-54 29-92 (373)
331 KOG0458|consensus 97.8 8.1E-05 1.8E-09 48.7 5.7 39 41-80 252-290 (603)
332 COG1120 FepC ABC-type cobalami 97.8 1.6E-05 3.5E-10 47.5 2.3 22 1-22 34-55 (258)
333 PRK13768 GTPase; Provisional 97.8 2E-05 4.4E-10 46.9 2.4 34 45-79 98-139 (253)
334 TIGR00150 HI0065_YjeE ATPase, 97.8 0.00013 2.7E-09 39.7 5.3 21 1-21 28-48 (133)
335 KOG1145|consensus 97.8 6.2E-05 1.3E-09 49.3 4.5 77 1-80 159-236 (683)
336 KOG2655|consensus 97.7 8.8E-05 1.9E-09 46.3 5.0 54 1-54 27-89 (366)
337 KOG1954|consensus 97.7 9.5E-05 2.1E-09 46.6 5.0 22 1-22 64-85 (532)
338 PF03266 NTPase_1: NTPase; In 97.7 5.9E-05 1.3E-09 42.5 3.8 18 2-19 6-23 (168)
339 KOG0082|consensus 97.7 6.6E-05 1.4E-09 46.7 4.1 51 28-80 180-230 (354)
340 PF00503 G-alpha: G-protein al 97.7 0.00012 2.6E-09 46.0 5.2 51 29-80 221-271 (389)
341 COG1136 SalX ABC-type antimicr 97.7 3.3E-05 7.1E-10 45.4 2.3 21 1-21 37-57 (226)
342 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 3.7E-05 8E-10 44.5 2.3 22 1-22 36-57 (218)
343 COG4525 TauB ABC-type taurine 97.6 5E-05 1.1E-09 44.2 2.7 22 1-22 37-58 (259)
344 cd03222 ABC_RNaseL_inhibitor T 97.6 4.1E-05 8.9E-10 43.4 2.1 22 1-22 31-52 (177)
345 cd03226 ABC_cobalt_CbiO_domain 97.6 4.3E-05 9.4E-10 43.9 2.2 22 1-22 32-53 (205)
346 COG3638 ABC-type phosphate/pho 97.6 4.4E-05 9.6E-10 45.2 2.2 22 1-22 36-57 (258)
347 cd03225 ABC_cobalt_CbiO_domain 97.6 4.6E-05 1E-09 43.9 2.3 22 1-22 33-54 (211)
348 TIGR00960 3a0501s02 Type II (G 97.6 4.4E-05 9.5E-10 44.1 2.2 22 1-22 35-56 (216)
349 cd03261 ABC_Org_Solvent_Resist 97.6 4.8E-05 1E-09 44.5 2.3 22 1-22 32-53 (235)
350 TIGR01166 cbiO cobalt transpor 97.6 5E-05 1.1E-09 43.1 2.3 22 1-22 24-45 (190)
351 cd03269 ABC_putative_ATPase Th 97.6 5.4E-05 1.2E-09 43.6 2.4 22 1-22 32-53 (210)
352 PF02367 UPF0079: Uncharacteri 97.6 0.00013 2.8E-09 39.2 3.6 30 2-32 22-51 (123)
353 cd03264 ABC_drug_resistance_li 97.6 5.7E-05 1.2E-09 43.5 2.3 22 1-22 31-52 (211)
354 cd03262 ABC_HisP_GlnQ_permease 97.6 5.9E-05 1.3E-09 43.4 2.3 22 1-22 32-53 (213)
355 PRK15177 Vi polysaccharide exp 97.6 5.7E-05 1.2E-09 43.8 2.2 22 1-22 19-40 (213)
356 PRK10078 ribose 1,5-bisphospho 97.6 5.4E-05 1.2E-09 43.0 2.1 20 1-20 8-27 (186)
357 cd03292 ABC_FtsE_transporter F 97.6 5.7E-05 1.2E-09 43.5 2.2 22 1-22 33-54 (214)
358 COG4778 PhnL ABC-type phosphon 97.6 6.4E-05 1.4E-09 42.9 2.4 22 2-23 44-65 (235)
359 cd03265 ABC_DrrA DrrA is the A 97.6 5.8E-05 1.3E-09 43.8 2.3 22 1-22 32-53 (220)
360 cd03257 ABC_NikE_OppD_transpor 97.6 5.8E-05 1.3E-09 43.8 2.3 22 1-22 37-58 (228)
361 TIGR02315 ABC_phnC phosphonate 97.6 5.8E-05 1.3E-09 44.3 2.3 22 1-22 34-55 (243)
362 TIGR03608 L_ocin_972_ABC putat 97.6 6.2E-05 1.4E-09 43.1 2.4 22 1-22 30-51 (206)
363 TIGR02211 LolD_lipo_ex lipopro 97.6 6.1E-05 1.3E-09 43.6 2.3 22 1-22 37-58 (221)
364 cd03293 ABC_NrtD_SsuB_transpor 97.6 5.9E-05 1.3E-09 43.7 2.3 22 1-22 36-57 (220)
365 cd03259 ABC_Carb_Solutes_like 97.5 6.4E-05 1.4E-09 43.4 2.3 22 1-22 32-53 (213)
366 cd03218 ABC_YhbG The ABC trans 97.5 6.4E-05 1.4E-09 43.9 2.3 22 1-22 32-53 (232)
367 cd03224 ABC_TM1139_LivF_branch 97.5 6.2E-05 1.3E-09 43.6 2.2 22 1-22 32-53 (222)
368 cd03301 ABC_MalK_N The N-termi 97.5 6.3E-05 1.4E-09 43.3 2.2 22 1-22 32-53 (213)
369 cd03235 ABC_Metallic_Cations A 97.5 6.3E-05 1.4E-09 43.4 2.2 22 1-22 31-52 (213)
370 PF00005 ABC_tran: ABC transpo 97.5 2.3E-05 4.9E-10 42.1 0.3 21 1-21 17-37 (137)
371 cd03229 ABC_Class3 This class 97.5 6.9E-05 1.5E-09 42.2 2.3 22 1-22 32-53 (178)
372 TIGR02673 FtsE cell division A 97.5 6.6E-05 1.4E-09 43.3 2.3 22 1-22 34-55 (214)
373 cd03263 ABC_subfamily_A The AB 97.5 7.1E-05 1.5E-09 43.3 2.3 22 1-22 34-55 (220)
374 COG2884 FtsE Predicted ATPase 97.5 6.6E-05 1.4E-09 43.4 2.1 23 1-23 34-56 (223)
375 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 7E-05 1.5E-09 43.9 2.3 22 1-22 33-54 (236)
376 cd03216 ABC_Carb_Monos_I This 97.5 7.6E-05 1.6E-09 41.6 2.3 22 1-22 32-53 (163)
377 cd03219 ABC_Mj1267_LivG_branch 97.5 6.9E-05 1.5E-09 43.8 2.2 22 1-22 32-53 (236)
378 PRK11629 lolD lipoprotein tran 97.5 7.6E-05 1.7E-09 43.7 2.3 22 1-22 41-62 (233)
379 cd03258 ABC_MetN_methionine_tr 97.5 7.6E-05 1.6E-09 43.6 2.2 22 1-22 37-58 (233)
380 cd03215 ABC_Carb_Monos_II This 97.5 8.2E-05 1.8E-09 42.1 2.3 22 1-22 32-53 (182)
381 cd03298 ABC_ThiQ_thiamine_tran 97.5 8.4E-05 1.8E-09 42.8 2.4 22 1-22 30-51 (211)
382 PRK11248 tauB taurine transpor 97.5 7.8E-05 1.7E-09 44.3 2.3 22 1-22 33-54 (255)
383 cd03296 ABC_CysA_sulfate_impor 97.5 8.2E-05 1.8E-09 43.7 2.3 22 1-22 34-55 (239)
384 cd03268 ABC_BcrA_bacitracin_re 97.5 8.5E-05 1.8E-09 42.7 2.3 22 1-22 32-53 (208)
385 cd03266 ABC_NatA_sodium_export 97.5 8.3E-05 1.8E-09 43.0 2.3 22 1-22 37-58 (218)
386 PRK13541 cytochrome c biogenes 97.5 8.8E-05 1.9E-09 42.3 2.3 22 1-22 32-53 (195)
387 cd03297 ABC_ModC_molybdenum_tr 97.5 8.4E-05 1.8E-09 42.9 2.3 22 1-22 29-50 (214)
388 cd03214 ABC_Iron-Siderophores_ 97.5 8.8E-05 1.9E-09 41.9 2.3 22 1-22 31-52 (180)
389 cd03256 ABC_PhnC_transporter A 97.5 8.1E-05 1.8E-09 43.6 2.2 22 1-22 33-54 (241)
390 cd03237 ABC_RNaseL_inhibitor_d 97.5 8.5E-05 1.8E-09 44.0 2.3 22 1-22 31-52 (246)
391 TIGR02836 spore_IV_A stage IV 97.5 0.00029 6.3E-09 45.1 4.7 18 1-18 23-40 (492)
392 PRK10646 ADP-binding protein; 97.5 0.00085 1.8E-08 37.4 6.0 54 2-56 35-89 (153)
393 PRK13538 cytochrome c biogenes 97.5 9.1E-05 2E-09 42.6 2.3 22 1-22 33-54 (204)
394 PRK10908 cell division protein 97.5 8.8E-05 1.9E-09 43.1 2.3 22 1-22 34-55 (222)
395 COG0802 Predicted ATPase or ki 97.5 0.00058 1.3E-08 37.8 5.3 66 2-68 32-98 (149)
396 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.5 8.8E-05 1.9E-09 40.6 2.1 22 1-22 32-53 (144)
397 PRK11247 ssuB aliphatic sulfon 97.5 8.9E-05 1.9E-09 44.2 2.2 22 1-22 44-65 (257)
398 cd03238 ABC_UvrA The excision 97.5 6.6E-05 1.4E-09 42.5 1.6 16 1-16 27-42 (176)
399 TIGR03410 urea_trans_UrtE urea 97.5 9.3E-05 2E-09 43.1 2.3 22 1-22 32-53 (230)
400 cd00820 PEPCK_HprK Phosphoenol 97.5 6.4E-05 1.4E-09 39.4 1.4 16 1-16 21-36 (107)
401 cd03254 ABCC_Glucan_exporter_l 97.5 9.6E-05 2.1E-09 43.0 2.3 22 1-22 35-56 (229)
402 PRK11545 gntK gluconate kinase 97.5 8E-05 1.7E-09 41.6 1.9 19 1-19 1-19 (163)
403 cd03260 ABC_PstB_phosphate_tra 97.5 8.7E-05 1.9E-09 43.2 2.1 19 1-19 32-50 (227)
404 PRK11124 artP arginine transpo 97.5 0.0001 2.2E-09 43.3 2.4 22 1-22 34-55 (242)
405 cd03246 ABCC_Protease_Secretio 97.5 9.9E-05 2.1E-09 41.4 2.2 22 1-22 34-55 (173)
406 PRK10895 lipopolysaccharide AB 97.5 9.9E-05 2.2E-09 43.3 2.3 22 1-22 35-56 (241)
407 COG1618 Predicted nucleotide k 97.5 0.00036 7.8E-09 39.3 4.3 48 2-52 12-59 (179)
408 COG1131 CcmA ABC-type multidru 97.5 9.8E-05 2.1E-09 44.9 2.3 22 1-22 37-58 (293)
409 COG0194 Gmk Guanylate kinase [ 97.5 0.00016 3.4E-09 41.4 3.0 19 1-19 10-28 (191)
410 PRK13638 cbiO cobalt transport 97.4 9.6E-05 2.1E-09 44.2 2.2 22 1-22 33-54 (271)
411 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.0001 2.2E-09 43.4 2.3 22 1-22 33-54 (242)
412 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00011 2.4E-09 41.3 2.3 22 1-22 32-53 (173)
413 PRK10247 putative ABC transpor 97.4 0.0001 2.2E-09 43.0 2.2 22 1-22 39-60 (225)
414 PRK13540 cytochrome c biogenes 97.4 0.00011 2.4E-09 42.1 2.4 22 1-22 33-54 (200)
415 PRK11650 ugpC glycerol-3-phosp 97.4 0.0001 2.2E-09 46.0 2.3 22 1-22 36-57 (356)
416 TIGR01188 drrA daunorubicin re 97.4 0.00011 2.3E-09 44.8 2.3 22 1-22 25-46 (302)
417 PRK10584 putative ABC transpor 97.4 0.00011 2.4E-09 42.8 2.3 22 1-22 42-63 (228)
418 TIGR01184 ntrCD nitrate transp 97.4 0.00011 2.4E-09 43.0 2.3 22 1-22 17-38 (230)
419 TIGR01189 ccmA heme ABC export 97.4 0.00011 2.4E-09 42.0 2.3 22 1-22 32-53 (198)
420 cd03223 ABCD_peroxisomal_ALDP 97.4 0.00012 2.5E-09 41.0 2.3 22 1-22 33-54 (166)
421 smart00382 AAA ATPases associa 97.4 0.00012 2.6E-09 38.5 2.3 22 1-22 8-29 (148)
422 PRK13649 cbiO cobalt transport 97.4 0.00011 2.3E-09 44.2 2.3 22 1-22 39-60 (280)
423 cd03294 ABC_Pro_Gly_Bertaine T 97.4 0.00011 2.4E-09 44.0 2.3 22 1-22 56-77 (269)
424 KOG1547|consensus 97.4 0.00041 8.8E-09 41.6 4.6 54 1-54 52-114 (336)
425 PRK13645 cbiO cobalt transport 97.4 0.00011 2.3E-09 44.5 2.2 22 1-22 43-64 (289)
426 KOG0461|consensus 97.4 0.0004 8.7E-09 43.6 4.7 78 1-79 13-104 (522)
427 PRK14250 phosphate ABC transpo 97.4 0.00011 2.4E-09 43.3 2.3 22 1-22 35-56 (241)
428 PRK11432 fbpC ferric transport 97.4 0.00011 2.3E-09 45.8 2.3 22 1-22 38-59 (351)
429 PF13207 AAA_17: AAA domain; P 97.4 5.3E-05 1.1E-09 39.9 0.8 19 1-19 5-23 (121)
430 TIGR02323 CP_lyasePhnK phospho 97.4 0.00012 2.6E-09 43.3 2.4 22 1-22 35-56 (253)
431 cd03267 ABC_NatA_like Similar 97.4 0.00011 2.4E-09 43.1 2.2 22 1-22 53-74 (236)
432 TIGR03740 galliderm_ABC gallid 97.4 0.00012 2.7E-09 42.5 2.4 22 1-22 32-53 (223)
433 TIGR02770 nickel_nikD nickel i 97.4 0.00011 2.3E-09 43.0 2.1 21 1-21 18-38 (230)
434 cd03247 ABCC_cytochrome_bd The 97.4 0.00012 2.6E-09 41.2 2.2 22 1-22 34-55 (178)
435 COG1118 CysA ABC-type sulfate/ 97.4 0.00011 2.5E-09 45.1 2.2 22 1-22 34-55 (345)
436 PRK13539 cytochrome c biogenes 97.4 0.00013 2.7E-09 42.1 2.4 22 1-22 34-55 (207)
437 cd03228 ABCC_MRP_Like The MRP 97.4 0.00012 2.7E-09 40.9 2.3 22 1-22 34-55 (171)
438 TIGR03411 urea_trans_UrtD urea 97.4 0.00012 2.6E-09 43.0 2.3 22 1-22 34-55 (242)
439 TIGR03265 PhnT2 putative 2-ami 97.4 0.00011 2.5E-09 45.7 2.3 22 1-22 36-57 (353)
440 KOG1144|consensus 97.4 0.00025 5.4E-09 48.1 3.9 79 1-80 481-575 (1064)
441 TIGR01187 potA spermidine/putr 97.4 0.00014 3.1E-09 44.7 2.6 22 1-22 2-23 (325)
442 PRK09452 potA putrescine/sperm 97.4 0.00012 2.6E-09 46.0 2.3 22 1-22 46-67 (375)
443 PRK15056 manganese/iron transp 97.4 0.00012 2.6E-09 43.9 2.2 22 1-22 39-60 (272)
444 cd03245 ABCC_bacteriocin_expor 97.4 0.00013 2.8E-09 42.3 2.3 22 1-22 36-57 (220)
445 PRK11831 putative ABC transpor 97.4 0.00013 2.7E-09 43.7 2.3 22 1-22 39-60 (269)
446 COG1127 Ttg2A ABC-type transpo 97.4 0.00013 2.8E-09 43.4 2.3 23 1-23 40-62 (263)
447 TIGR03005 ectoine_ehuA ectoine 97.4 0.00013 2.8E-09 43.2 2.3 22 1-22 32-53 (252)
448 PRK11000 maltose/maltodextrin 97.4 0.00012 2.6E-09 45.8 2.3 22 1-22 35-56 (369)
449 cd03236 ABC_RNaseL_inhibitor_d 97.4 0.00013 2.8E-09 43.5 2.3 22 1-22 32-53 (255)
450 cd00071 GMPK Guanosine monopho 97.4 0.00012 2.7E-09 39.8 2.0 20 1-20 5-24 (137)
451 PRK11300 livG leucine/isoleuci 97.4 0.00013 2.8E-09 43.2 2.2 22 1-22 37-58 (255)
452 PRK11264 putative amino-acid A 97.4 0.00013 2.9E-09 43.0 2.3 22 1-22 35-56 (250)
453 PRK11153 metN DL-methionine tr 97.4 0.00013 2.7E-09 45.3 2.3 22 1-22 37-58 (343)
454 cd03231 ABC_CcmA_heme_exporter 97.4 0.00013 2.9E-09 41.8 2.2 22 1-22 32-53 (201)
455 PRK15112 antimicrobial peptide 97.4 0.00014 3E-09 43.5 2.3 22 1-22 45-66 (267)
456 TIGR01277 thiQ thiamine ABC tr 97.4 0.00014 3.1E-09 42.0 2.3 22 1-22 30-51 (213)
457 cd03252 ABCC_Hemolysin The ABC 97.4 0.00013 2.8E-09 42.7 2.2 22 1-22 34-55 (237)
458 PRK09544 znuC high-affinity zi 97.4 0.00014 2.9E-09 43.3 2.2 22 1-22 36-57 (251)
459 PRK10851 sulfate/thiosulfate t 97.4 0.00014 2.9E-09 45.4 2.3 22 1-22 34-55 (353)
460 PRK14267 phosphate ABC transpo 97.4 0.00013 2.8E-09 43.1 2.2 21 1-21 36-56 (253)
461 PRK11144 modC molybdate transp 97.4 0.00013 2.9E-09 45.3 2.2 22 1-22 30-51 (352)
462 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00014 3E-09 42.5 2.2 22 1-22 34-55 (234)
463 COG1124 DppF ABC-type dipeptid 97.4 0.00014 3E-09 43.2 2.2 22 1-22 39-60 (252)
464 PRK13548 hmuV hemin importer A 97.4 0.00014 3E-09 43.3 2.2 22 1-22 34-55 (258)
465 PRK11701 phnK phosphonate C-P 97.4 0.00015 3.3E-09 43.1 2.4 22 1-22 38-59 (258)
466 PRK10771 thiQ thiamine transpo 97.4 0.00014 3.1E-09 42.5 2.2 22 1-22 31-52 (232)
467 PRK13632 cbiO cobalt transport 97.4 0.00015 3.2E-09 43.5 2.3 22 1-22 41-62 (271)
468 cd03244 ABCC_MRP_domain2 Domai 97.4 0.00015 3.3E-09 42.0 2.3 22 1-22 36-57 (221)
469 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.4 0.00013 2.9E-09 42.7 2.1 22 1-22 35-56 (238)
470 KOG1487|consensus 97.4 0.00049 1.1E-08 41.7 4.4 77 1-81 65-149 (358)
471 TIGR02324 CP_lyasePhnL phospho 97.4 0.00015 3.2E-09 42.2 2.2 22 1-22 40-61 (224)
472 PRK13646 cbiO cobalt transport 97.4 0.00015 3.2E-09 43.9 2.3 22 1-22 39-60 (286)
473 TIGR00972 3a0107s01c2 phosphat 97.4 0.00015 3.3E-09 42.8 2.2 22 1-22 33-54 (247)
474 TIGR02769 nickel_nikE nickel i 97.4 0.00015 3.3E-09 43.2 2.3 22 1-22 43-64 (265)
475 PRK13648 cbiO cobalt transport 97.4 0.00016 3.4E-09 43.3 2.3 22 1-22 41-62 (269)
476 TIGR03771 anch_rpt_ABC anchore 97.3 0.00016 3.4E-09 42.2 2.3 22 1-22 12-33 (223)
477 cd03253 ABCC_ATM1_transporter 97.3 0.00016 3.4E-09 42.3 2.3 22 1-22 33-54 (236)
478 TIGR02314 ABC_MetN D-methionin 97.3 0.00015 3.2E-09 45.0 2.3 22 1-22 37-58 (343)
479 PRK13543 cytochrome c biogenes 97.3 0.00016 3.4E-09 41.9 2.3 22 1-22 43-64 (214)
480 TIGR01288 nodI ATP-binding ABC 97.3 0.00015 3.3E-09 44.1 2.3 22 1-22 36-57 (303)
481 PF13555 AAA_29: P-loop contai 97.3 0.00018 3.8E-09 34.2 2.0 15 1-15 29-43 (62)
482 TIGR02142 modC_ABC molybdenum 97.3 0.00015 3.3E-09 45.1 2.3 22 1-22 29-50 (354)
483 COG4133 CcmA ABC-type transpor 97.3 0.00019 4.1E-09 41.4 2.4 21 2-22 35-55 (209)
484 cd03250 ABCC_MRP_domain1 Domai 97.3 0.00016 3.5E-09 41.5 2.2 22 1-22 37-58 (204)
485 COG4559 ABC-type hemin transpo 97.3 0.00015 3.3E-09 42.6 2.1 22 1-22 33-54 (259)
486 TIGR03258 PhnT 2-aminoethylpho 97.3 0.00015 3.4E-09 45.3 2.3 23 1-23 37-59 (362)
487 PRK11231 fecE iron-dicitrate t 97.3 0.00016 3.4E-09 42.9 2.2 22 1-22 34-55 (255)
488 PF00004 AAA: ATPase family as 97.3 0.00014 3.1E-09 38.4 1.9 19 1-19 4-22 (132)
489 PRK09493 glnQ glutamine ABC tr 97.3 0.00017 3.6E-09 42.4 2.2 22 1-22 33-54 (240)
490 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.3 0.00017 3.7E-09 42.1 2.3 22 1-22 54-75 (224)
491 TIGR02322 phosphon_PhnN phosph 97.3 0.00015 3.2E-09 40.8 1.9 19 1-19 7-25 (179)
492 PRK10575 iron-hydroxamate tran 97.3 0.00015 3.3E-09 43.2 2.1 22 1-22 43-64 (265)
493 PRK13641 cbiO cobalt transport 97.3 0.00017 3.7E-09 43.6 2.3 22 1-22 39-60 (287)
494 PRK10253 iron-enterobactin tra 97.3 0.00016 3.5E-09 43.1 2.2 22 1-22 39-60 (265)
495 TIGR01186 proV glycine betaine 97.3 0.00016 3.5E-09 45.2 2.2 22 1-22 25-46 (363)
496 PRK13635 cbiO cobalt transport 97.3 0.00018 3.8E-09 43.4 2.2 22 1-22 39-60 (279)
497 TIGR03263 guanyl_kin guanylate 97.3 0.00018 3.9E-09 40.4 2.2 19 1-19 7-25 (180)
498 COG1121 ZnuC ABC-type Mn/Zn tr 97.3 0.00018 3.9E-09 43.0 2.2 22 1-22 36-57 (254)
499 cd03290 ABCC_SUR1_N The SUR do 97.3 0.00019 4E-09 41.6 2.2 22 1-22 33-54 (218)
500 COG1119 ModF ABC-type molybden 97.3 0.00017 3.8E-09 42.9 2.1 22 1-22 63-84 (257)
No 1
>KOG0084|consensus
Probab=99.94 E-value=5.9e-27 Score=131.43 Aligned_cols=78 Identities=19% Similarity=0.343 Sum_probs=65.0
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||+|+ |+-.+.+.+.+..++..+.......+. ++.++++||||+|||+|+.+.. .|||+|+++|+|||++
T Consensus 15 iGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-gk~iKlQIWDTAGQERFrtit~-syYR~ahGii~vyDiT 92 (205)
T KOG0084|consen 15 IGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-GKTIKLQIWDTAGQERFRTITS-SYYRGAHGIIFVYDIT 92 (205)
T ss_pred ECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-ceEEEEEeeeccccHHHhhhhH-hhccCCCeEEEEEEcc
Confidence 699999999998 555666777777766666555554554 9999999999999999999955 9999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 93 ~ 93 (205)
T KOG0084|consen 93 K 93 (205)
T ss_pred c
Confidence 6
No 2
>KOG0092|consensus
Probab=99.93 E-value=3.2e-26 Score=128.10 Aligned_cols=79 Identities=20% Similarity=0.389 Sum_probs=66.8
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+++||||||+ |+..++|.+...+++...+ +.+....++..++|.||||+|||+|+.+.+ .|||+++++|+|||++
T Consensus 11 LG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF-~tktv~~~~~~ikfeIWDTAGQERy~slap-MYyRgA~AAivvYDit 88 (200)
T KOG0092|consen 11 LGDSGVGKSSLVLRFVKDQFHENIEPTIGAAF-LTKTVTVDDNTIKFEIWDTAGQERYHSLAP-MYYRGANAAIVVYDIT 88 (200)
T ss_pred ECCCCCCchhhhhhhhhCccccccccccccEE-EEEEEEeCCcEEEEEEEEcCCccccccccc-ceecCCcEEEEEEecc
Confidence 699999999996 8999999988666666554 344444457789999999999999999977 9999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
+.
T Consensus 89 ~~ 90 (200)
T KOG0092|consen 89 DE 90 (200)
T ss_pred cH
Confidence 73
No 3
>KOG0094|consensus
Probab=99.92 E-value=2.1e-25 Score=125.27 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=66.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+.+||||||+ |++.+.+...+..++..++-... ....+..+.|++|||+|||+|+.+.+ .|+|++.++|+|||++
T Consensus 28 lGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt-~~l~d~~vrLQlWDTAGQERFrslip-sY~Rds~vaviVyDit 105 (221)
T KOG0094|consen 28 LGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKT-MYLEDRTVRLQLWDTAGQERFRSLIP-SYIRDSSVAVIVYDIT 105 (221)
T ss_pred EccCccchHHHHHHHHHhhhcccccceeeeEEEEEE-EEEcCcEEEEEEEecccHHHHhhhhh-hhccCCeEEEEEEecc
Confidence 699999999998 78888888888766666543333 33348899999999999999999977 9999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
|
T Consensus 106 ~ 106 (221)
T KOG0094|consen 106 D 106 (221)
T ss_pred c
Confidence 7
No 4
>KOG0080|consensus
Probab=99.92 E-value=3.8e-25 Score=121.40 Aligned_cols=78 Identities=19% Similarity=0.345 Sum_probs=66.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||++|||||||+ ++..+.+.+....++..++......+ +++..++.||||+|||+|+.+++ .|||.|.++|+|||++
T Consensus 17 IGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqErFRtLTp-SyyRgaqGiIlVYDVT 94 (209)
T KOG0080|consen 17 IGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQERFRTLTP-SYYRGAQGIILVYDVT 94 (209)
T ss_pred EccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEE-cCceEEEEEEeccchHhhhccCH-hHhccCceeEEEEEcc
Confidence 699999999996 77778888877666666655555444 48999999999999999999977 9999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
.
T Consensus 95 ~ 95 (209)
T KOG0080|consen 95 S 95 (209)
T ss_pred c
Confidence 5
No 5
>KOG0098|consensus
Probab=99.90 E-value=8.8e-24 Score=118.13 Aligned_cols=78 Identities=18% Similarity=0.328 Sum_probs=70.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.|||||+|+ |+..+.|.+....+.....+.....++ ++++++++|||+||+.|+.++. .||+.+.++|+|||++
T Consensus 12 iGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id-~k~IKlqiwDtaGqe~frsv~~-syYr~a~GalLVydit 89 (216)
T KOG0098|consen 12 IGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTID-GKQIKLQIWDTAGQESFRSVTR-SYYRGAAGALLVYDIT 89 (216)
T ss_pred ECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEc-CceEEEEEEecCCcHHHHHHHH-HHhccCcceEEEEEcc
Confidence 699999999996 777888989888888888887777776 9999999999999999999955 9999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
.
T Consensus 90 ~ 90 (216)
T KOG0098|consen 90 R 90 (216)
T ss_pred c
Confidence 5
No 6
>KOG0394|consensus
Probab=99.90 E-value=3.6e-24 Score=119.42 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=63.8
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++ +..++|...+..++... ..+++...+++.+.++||||+|||+|+.+.. .+||++|++++|||+.
T Consensus 15 LGDsGVGKtSLmn~yv~~kF~~qykaTIgad-FltKev~Vd~~~vtlQiWDTAGQERFqsLg~-aFYRgaDcCvlvydv~ 92 (210)
T KOG0394|consen 15 LGDSGVGKTSLMNQYVNKKFSQQYKATIGAD-FLTKEVQVDDRSVTLQIWDTAGQERFQSLGV-AFYRGADCCVLVYDVN 92 (210)
T ss_pred eCCCCccHHHHHHHHHHHHHHHHhccccchh-heeeEEEEcCeEEEEEEEecccHHHhhhccc-ceecCCceEEEEeecC
Confidence 6999999999995 44555665555444444 4566666668999999999999999999954 9999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 93 ~~ 94 (210)
T KOG0394|consen 93 NP 94 (210)
T ss_pred Ch
Confidence 64
No 7
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.90 E-value=1.9e-23 Score=119.62 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=60.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||+ ++..+.+.+.+.++...........+ +++.+++++||++|+++|+.+ +..|+++++++|+|||++
T Consensus 6 lG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~~~~l-~~~y~~~ad~iIlVfDvt 83 (202)
T cd04120 6 IGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSI-TSAYYRSAKGIILVYDIT 83 (202)
T ss_pred ECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchhhHHH-HHHHhcCCCEEEEEEECc
Confidence 699999999998 55556666555444333332223333 467899999999999999999 569999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 84 d~ 85 (202)
T cd04120 84 KK 85 (202)
T ss_pred CH
Confidence 74
No 8
>KOG0078|consensus
Probab=99.90 E-value=1.8e-23 Score=118.41 Aligned_cols=79 Identities=16% Similarity=0.285 Sum_probs=65.2
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||+++ ++..+.+......+...........++ +..+.+++|||+||++|+.+.. .||+.|.++++|||++
T Consensus 18 iGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-g~~i~lQiWDtaGQerf~ti~~-sYyrgA~gi~LvyDit 95 (207)
T KOG0078|consen 18 IGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-GKKIKLQIWDTAGQERFRTITT-AYYRGAMGILLVYDIT 95 (207)
T ss_pred ECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-CeEEEEEEEEcccchhHHHHHH-HHHhhcCeeEEEEEcc
Confidence 699999999998 555666666676666666554444444 8999999999999999999955 9999999999999999
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 96 ne 97 (207)
T KOG0078|consen 96 NE 97 (207)
T ss_pred ch
Confidence 74
No 9
>KOG0079|consensus
Probab=99.89 E-value=5.3e-23 Score=111.77 Aligned_cols=79 Identities=23% Similarity=0.351 Sum_probs=67.2
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||++|||||||+ ++-.+.|...+..++..+..+....+. +..++++|||++|||+|+.+ ...||+..+++++|||++
T Consensus 14 igDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrti-tstyyrgthgv~vVYDVT 91 (198)
T KOG0079|consen 14 IGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTI-TSTYYRGTHGVIVVYDVT 91 (198)
T ss_pred ecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHH-HHHHccCCceEEEEEECc
Confidence 699999999997 666677777788877777655555555 89999999999999999999 459999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 92 n~ 93 (198)
T KOG0079|consen 92 NG 93 (198)
T ss_pred ch
Confidence 74
No 10
>KOG0095|consensus
Probab=99.89 E-value=5.1e-23 Score=112.15 Aligned_cols=77 Identities=23% Similarity=0.401 Sum_probs=63.7
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|..|||||+|+| +..+-|+|....++...+-.....+ +++.++++||||+|||+|+.+ .+.||+.++++|+|||++
T Consensus 13 vgnagvgktclvrrftqglfppgqgatigvdfmiktvev-~gekiklqiwdtagqerfrsi-tqsyyrsahalilvydis 90 (213)
T KOG0095|consen 13 VGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEV-NGEKIKLQIWDTAGQERFRSI-TQSYYRSAHALILVYDIS 90 (213)
T ss_pred EccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEE-CCeEEEEEEeeccchHHHHHH-HHHHhhhcceEEEEEecc
Confidence 6899999999995 5567788877666666544444444 489999999999999999999 459999999999999987
No 11
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.88 E-value=2.2e-22 Score=114.22 Aligned_cols=78 Identities=14% Similarity=0.267 Sum_probs=60.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||+ +++.+.+.+.+.++.... +......+++.+.+++||++|+++|+.+ +..|+++++++|+|||++
T Consensus 9 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~e~~~~l-~~~~~~~a~~~ilvydit 85 (191)
T cd01875 9 VGDGAVGKTCLLICYTTNAFPKEYIPTVFDN--YSAQTAVDGRTVSLNLWDTAGQEEYDRL-RTLSYPQTNVFIICFSIA 85 (191)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcCCCCceEee--eEEEEEECCEEEEEEEEECCCchhhhhh-hhhhccCCCEEEEEEECC
Confidence 699999999998 555666656554444332 2222223478899999999999999999 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 86 ~~ 87 (191)
T cd01875 86 SP 87 (191)
T ss_pred CH
Confidence 74
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.88 E-value=3.7e-22 Score=112.76 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||+ +++.+.+.+.+.++.... +......++..+++++|||+|+++|..++ ..++++++++|+|||++
T Consensus 11 vGd~~vGKTsli~~~~~~~f~~~~~pT~~~~--~~~~~~~~~~~~~l~iwDtaG~e~~~~~~-~~~~~~ad~~ilvyDit 87 (182)
T cd04172 11 VGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YTASFEIDTQRIELSLWDTSGSPYYDNVR-PLSYPDSDAVLICFDIS 87 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCccCCceeee--eEEEEEECCEEEEEEEEECCCchhhHhhh-hhhcCCCCEEEEEEECC
Confidence 699999999998 555566666554444333 22233335788999999999999999994 48999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 88 ~~ 89 (182)
T cd04172 88 RP 89 (182)
T ss_pred CH
Confidence 74
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.87 E-value=5.7e-22 Score=111.54 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||+ +++.+.+...+.++..... ......++..+++++|||+|+++|+.+.. .++++++++|+|||++
T Consensus 7 ~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~--~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~-~~~~~a~~~ilvyd~~ 83 (176)
T cd04133 7 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF--SANVSVDGNTVNLGLWDTAGQEDYNRLRP-LSYRGADVFVLAFSLI 83 (176)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCCCCcceeee--EEEEEECCEEEEEEEEECCCCccccccch-hhcCCCcEEEEEEEcC
Confidence 699999999998 5556666665555554432 22223357889999999999999999955 8999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (176)
T cd04133 84 SR 85 (176)
T ss_pred CH
Confidence 74
No 14
>KOG0086|consensus
Probab=99.87 E-value=2.1e-22 Score=110.13 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=65.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.|.|||+|+ +++.++++.....++...++.....+ ..+.++++||||+|||+|+...+ .||+++.+.++|||++
T Consensus 15 iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinV-GgK~vKLQIWDTAGQErFRSVtR-sYYRGAAGAlLVYD~T 92 (214)
T KOG0086|consen 15 IGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNV-GGKTVKLQIWDTAGQERFRSVTR-SYYRGAAGALLVYDIT 92 (214)
T ss_pred eccCCCChhHHHHHHHHhhhcccccceeeeeecceeeee-cCcEEEEEEeecccHHHHHHHHH-HHhccccceEEEEecc
Confidence 599999999999 77788888876666666655444444 48999999999999999999955 9999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 93 s 93 (214)
T KOG0086|consen 93 S 93 (214)
T ss_pred c
Confidence 6
No 15
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.87 E-value=1.3e-21 Score=111.95 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=58.9
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+++||||||++.+ .+.+...+.++...+........ +++.++++|||++|+++|+.+ +..||++++++|+|||++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~-~~~~~~l~iwDt~G~e~~~~l-~~~~~~~ad~~ilV~D~t 78 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIRFNVWDTAGQEKFGGL-RDGYYIQGQCAIIMFDVT 78 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEE-CCEEEEEEEEECCCchhhhhh-hHHHhcCCCEEEEEEECC
Confidence 799999999998544 45555444444333332222222 467899999999999999999 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 79 ~~ 80 (200)
T smart00176 79 AR 80 (200)
T ss_pred Ch
Confidence 73
No 16
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=1.2e-21 Score=110.36 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=58.7
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+...+.++.... +......+++.+++++|||+|++.|..+.+ .++++++++|+|||++
T Consensus 7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~-~~~~~a~~~ilvfdit 83 (178)
T cd04131 7 VGDVQCGKTALLQVFAKDCYPETYVPTVFEN--YTASFEIDEQRIELSLWDTSGSPYYDNVRP-LCYPDSDAVLICFDIS 83 (178)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCCcCCceEEE--EEEEEEECCEEEEEEEEECCCchhhhhcch-hhcCCCCEEEEEEECC
Confidence 699999999998544 555555544443322 222222347889999999999999999855 8999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (178)
T cd04131 84 RP 85 (178)
T ss_pred Ch
Confidence 74
No 17
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.86 E-value=1.1e-21 Score=111.38 Aligned_cols=79 Identities=20% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+...+.+....... ......++..+++++||++|+++|..+ +..++++++++|+|||++
T Consensus 12 iG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~-~~~i~~~~~~~~l~iwDt~G~~~~~~l-~~~~~~~ad~illVfD~t 89 (189)
T cd04121 12 VGDSDVGKGEILASLQDGSTESPYGYNMGIDYK-TTTILLDGRRVKLQLWDTSGQGRFCTI-FRSYSRGAQGIILVYDIT 89 (189)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEE-EEEEEECCEEEEEEEEeCCCcHHHHHH-HHHHhcCCCEEEEEEECc
Confidence 6999999999995554 4444443333222221 222222477899999999999999999 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 90 ~~ 91 (189)
T cd04121 90 NR 91 (189)
T ss_pred CH
Confidence 74
No 18
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.86 E-value=1.4e-21 Score=110.38 Aligned_cols=79 Identities=23% Similarity=0.340 Sum_probs=59.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||+ +++.+.+.+.+.++............ ++..+.+++||++|+++|..+ +..++++++++++|||++
T Consensus 6 lG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~~~~~-~~~~~~~a~~iilv~D~t 83 (182)
T cd04128 6 LGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISI-RGTEITFSIWDLGGQREFINM-LPLVCNDAVAILFMFDLT 83 (182)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCchhHHHh-hHHHCcCCCEEEEEEECc
Confidence 699999999998 45555565555444433322222233 467899999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (182)
T cd04128 84 RK 85 (182)
T ss_pred CH
Confidence 74
No 19
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.86 E-value=1.5e-21 Score=109.49 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=58.7
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++ ++.+.+...+.++..... ......+++.+++++||++|+++|..+ +..++++++++|+|||++
T Consensus 7 vG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~a~~~ilv~d~~ 83 (175)
T cd01874 7 VGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY--AVTVMIGGEPYTLGLFDTAGQEDYDRL-RPLSYPQTDVFLVCFSVV 83 (175)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeee--EEEEEECCEEEEEEEEECCCccchhhh-hhhhcccCCEEEEEEECC
Confidence 6999999999985 445555555544443322 222223477799999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (175)
T cd01874 84 SP 85 (175)
T ss_pred CH
Confidence 74
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=1.4e-21 Score=113.98 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=59.8
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+++||||||+ +++.+.+...+.++..... ......++..+.++||||+|++.|..+.+ .||++++++|+|||++
T Consensus 19 vGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~--~~~i~~~~~~v~l~iwDTaG~e~~~~~~~-~~~~~ad~vIlVyDit 95 (232)
T cd04174 19 VGDVQCGKTAMLQVLAKDCYPETYVPTVFENY--TAGLETEEQRVELSLWDTSGSPYYDNVRP-LCYSDSDAVLLCFDIS 95 (232)
T ss_pred ECCCCCcHHHHHHHHhcCCCCCCcCCceeeee--EEEEEECCEEEEEEEEeCCCchhhHHHHH-HHcCCCcEEEEEEECC
Confidence 699999999998 4555556655544443332 22223347889999999999999999844 8999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 96 ~~ 97 (232)
T cd04174 96 RP 97 (232)
T ss_pred Ch
Confidence 74
No 21
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.86 E-value=2.4e-21 Score=107.20 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=59.7
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++ ++.+.+.+.+.+....+........ ++..+.+++||++|+++|..+ +..+++++|++|+|||++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 83 (161)
T cd04124 6 LGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKF-EGKTILVDFWDTAGQERFQTM-HASYYHKAHACILVFDVT 83 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCchhhhhh-hHHHhCCCCEEEEEEECC
Confidence 6999999999995 5555565555444444433223333 367889999999999999998 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (161)
T cd04124 84 RK 85 (161)
T ss_pred CH
Confidence 63
No 22
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.86 E-value=1.9e-21 Score=111.44 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=59.0
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeec----CCceeEEEEEecCCCccccccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIA----NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v 75 (81)
+|+++||||||++.+ .+.+.+.+.++...+.......+. +++.+.++|||++|+++|+.+ +..||++++++|+|
T Consensus 6 vGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l-~~~~yr~ad~iIlV 84 (202)
T cd04102 6 VGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKST-RAVFYNQVNGIILV 84 (202)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHH-HHHHhCcCCEEEEE
Confidence 699999999999555 445555554444333322222222 246789999999999999998 55999999999999
Q ss_pred EEccCC
Q psy9524 76 IDTSMG 81 (81)
Q Consensus 76 ~D~~~~ 81 (81)
||++++
T Consensus 85 yDvtn~ 90 (202)
T cd04102 85 HDLTNR 90 (202)
T ss_pred EECcCh
Confidence 999874
No 23
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=3.5e-21 Score=109.88 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=58.5
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+...+.++..............+..+.+++||++|+++|..+ +..++++++++|+|||++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~a~~~ilv~D~t 84 (201)
T cd04107 6 IGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGM-TRVYYRGAVGAIIVFDVT 84 (201)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhh-HHHHhCCCCEEEEEEECC
Confidence 6999999999996554 44444443333332222222332267899999999999999998 569999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (201)
T cd04107 85 RP 86 (201)
T ss_pred CH
Confidence 74
No 24
>KOG0091|consensus
Probab=99.86 E-value=1.8e-22 Score=111.23 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=63.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||++-|||||||+++ .+++.+-..++...+.......+.++..+++++|||+|||+|+.++. .||+++-++++|||++
T Consensus 14 igdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitk-syyrnsvgvllvydit 92 (213)
T KOG0091|consen 14 IGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITK-SYYRNSVGVLLVYDIT 92 (213)
T ss_pred EcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHH-HHhhcccceEEEEecc
Confidence 699999999999766 45555545444444443344445568999999999999999999955 9999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|.
T Consensus 93 nr 94 (213)
T KOG0091|consen 93 NR 94 (213)
T ss_pred ch
Confidence 73
No 25
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.86 E-value=2.8e-21 Score=107.19 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=58.4
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+.+...++............ ++..+++++||++|++++..+ +..++++++++|+|||++
T Consensus 8 iG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~ilv~d~~ 85 (166)
T cd04122 8 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQERFRAV-TRSYYRGAAGALMVYDIT 85 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-HHHHhcCCCEEEEEEECC
Confidence 6999999999996554 4454444433333322222233 367789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 86 ~~ 87 (166)
T cd04122 86 RR 87 (166)
T ss_pred CH
Confidence 74
No 26
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.85 E-value=2.3e-21 Score=112.43 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=59.8
Q ss_pred CCCCCCcHhHHHHH-HhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKV-VFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+++||||||++. ..+.+...+.++..... ......++..+.|.|||++|++.|..+++ .+|+++|++|+|||++
T Consensus 7 vGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~--~~~~~~~~~~v~L~iwDt~G~e~~~~l~~-~~~~~~d~illvfdis 83 (222)
T cd04173 7 VGDAECGKTALLQVFAKDAYPGSYVPTVFENY--TASFEIDKRRIELNMWDTSGSSYYDNVRP-LAYPDSDAVLICFDIS 83 (222)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCCccccce--EEEEEECCEEEEEEEEeCCCcHHHHHHhH-HhccCCCEEEEEEECC
Confidence 69999999999854 45556555554444332 22223347889999999999999999944 8999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (222)
T cd04173 84 RP 85 (222)
T ss_pred CH
Confidence 74
No 27
>KOG0087|consensus
Probab=99.85 E-value=1.7e-21 Score=110.56 Aligned_cols=78 Identities=14% Similarity=0.280 Sum_probs=63.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||-|| |+..+.|..+.-.++...+......+ +++.++.+||||+|||+|+.+.. .||+.|.++++|||++
T Consensus 20 iGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~v-d~k~vkaqIWDTAGQERyrAitS-aYYrgAvGAllVYDIT 97 (222)
T KOG0087|consen 20 IGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNV-DGKTVKAQIWDTAGQERYRAITS-AYYRGAVGALLVYDIT 97 (222)
T ss_pred eCCCccchhHHHHHhcccccCcccccceeEEEEeeceee-cCcEEEEeeecccchhhhccccc-hhhcccceeEEEEech
Confidence 699999999998 66677777665555555544344334 59999999999999999999855 9999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
.
T Consensus 98 r 98 (222)
T KOG0087|consen 98 R 98 (222)
T ss_pred h
Confidence 4
No 28
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.85 E-value=4.6e-21 Score=107.47 Aligned_cols=78 Identities=14% Similarity=0.236 Sum_probs=58.8
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++ ++.+.+...+.++..... ......+++.+++++||++|++.|..+ +..+++++|++|+|||++
T Consensus 7 iG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d~~ 83 (174)
T cd01871 7 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY--SANVMVDGKPVNLGLWDTAGQEDYDRL-RPLSYPQTDVFLICFSLV 83 (174)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCcCCCcceeee--EEEEEECCEEEEEEEEECCCchhhhhh-hhhhcCCCCEEEEEEECC
Confidence 6999999999984 555556555544443322 222233477899999999999999998 458999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (174)
T cd01871 84 SP 85 (174)
T ss_pred CH
Confidence 74
No 29
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.85 E-value=4.6e-21 Score=107.11 Aligned_cols=78 Identities=24% Similarity=0.293 Sum_probs=58.7
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++++ .+.+.+.+.++............ .+..+++++||++|+++|..+ +..+++++|++++|||++
T Consensus 6 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~~ilv~d~~ 83 (170)
T cd04108 6 VGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEI-LGVPFSLQLWDTAGQERFKCI-ASTYYRGAQAIIIVFDLT 83 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHhh-HHHHhcCCCEEEEEEECc
Confidence 699999999998555 44455555444443332222223 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (170)
T cd04108 84 D 84 (170)
T ss_pred C
Confidence 6
No 30
>KOG0093|consensus
Probab=99.85 E-value=4e-21 Score=104.38 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=63.2
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++.|||||++ +++.+.|.+....+...... .+..+...+.+++++|||+|||+|+.++. .|||+++++|++||++
T Consensus 27 iGnssvGKTSfl~ry~ddSFt~afvsTvGidFK-vKTvyr~~kRiklQiwDTagqEryrtiTT-ayyRgamgfiLmyDit 104 (193)
T KOG0093|consen 27 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK-VKTVYRSDKRIKLQIWDTAGQERYRTITT-AYYRGAMGFILMYDIT 104 (193)
T ss_pred EccCCccchhhhHHhhccccccceeeeeeeeEE-EeEeeecccEEEEEEEecccchhhhHHHH-HHhhccceEEEEEecC
Confidence 699999999998 56555666665555554432 33455567889999999999999999965 9999999999999999
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 105 Ne 106 (193)
T KOG0093|consen 105 NE 106 (193)
T ss_pred CH
Confidence 75
No 31
>KOG0073|consensus
Probab=99.84 E-value=2.5e-21 Score=106.38 Aligned_cols=75 Identities=27% Similarity=0.417 Sum_probs=65.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+.|+|||++++.+.+ ..+..+.|+.++...... .+.+++++||.+||..++.. |++||..+|++|+|+|++|
T Consensus 22 LGLdNsGKTti~~kl~~----~~~~~i~pt~gf~Iktl~-~~~~~L~iwDvGGq~~lr~~-W~nYfestdglIwvvDssD 95 (185)
T KOG0073|consen 22 LGLDNSGKTTIVKKLLG----EDTDTISPTLGFQIKTLE-YKGYTLNIWDVGGQKTLRSY-WKNYFESTDGLIWVVDSSD 95 (185)
T ss_pred EecCCCCchhHHHHhcC----CCccccCCccceeeEEEE-ecceEEEEEEcCCcchhHHH-HHHhhhccCeEEEEEECch
Confidence 59999999999965533 345667788888888887 88899999999999999999 8899999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 96 ~ 96 (185)
T KOG0073|consen 96 R 96 (185)
T ss_pred H
Confidence 4
No 32
>KOG0070|consensus
Probab=99.84 E-value=1.3e-21 Score=109.08 Aligned_cols=75 Identities=28% Similarity=0.428 Sum_probs=67.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..++||||+++ ++...+..++.||++++.+.+. .+++++++||.+||++++.+ |+.||++++++|+|+|.+|
T Consensus 23 lGLD~AGKTTILy----kLk~~E~vttvPTiGfnVE~v~-ykn~~f~vWDvGGq~k~R~l-W~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 23 VGLDAAGKTTILY----KLKLGEIVTTVPTIGFNVETVE-YKNISFTVWDVGGQEKLRPL-WKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred EeccCCCceeeeE----eeccCCcccCCCccccceeEEE-EcceEEEEEecCCCcccccc-hhhhccCCcEEEEEEeCCc
Confidence 6899999999994 5566677777999999999988 88999999999999999999 8899999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
.
T Consensus 97 r 97 (181)
T KOG0070|consen 97 R 97 (181)
T ss_pred H
Confidence 3
No 33
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.84 E-value=1.3e-20 Score=109.07 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=59.0
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++ ++.+.+...+.++...+.... ....++..+++++||++|+++|..+ +..|+++++++|+|||++
T Consensus 19 vG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~ilvfD~~ 96 (219)
T PLN03071 19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQEKFGGL-RDGYYIHGQCAIIMFDVT 96 (219)
T ss_pred ECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEE-EEEECCeEEEEEEEECCCchhhhhh-hHHHcccccEEEEEEeCC
Confidence 6999999999995 455666555544443332222 2222356789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 97 ~~ 98 (219)
T PLN03071 97 AR 98 (219)
T ss_pred CH
Confidence 74
No 34
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.84 E-value=1.3e-20 Score=108.62 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+ .+...+.++...........+.+...++++|||++|++.+..+ +..+++++|++|+|||++
T Consensus 6 vG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l-~~~~~~~ad~iilV~D~t 84 (215)
T cd04109 6 LGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKM-LDKYIYGAHAVFLVYDVT 84 (215)
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHH-HHHHhhcCCEEEEEEECC
Confidence 69999999999966644 4444444444333333333333346789999999999999998 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (215)
T cd04109 85 NS 86 (215)
T ss_pred CH
Confidence 74
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.84 E-value=1.4e-20 Score=103.73 Aligned_cols=78 Identities=13% Similarity=0.185 Sum_probs=57.2
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++.... +......++..+.+++||++|+++|..+ +..++++++++++|||++
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~ilv~d~~ 83 (163)
T cd04136 7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDS--YRKQIEVDGQQCMLEILDTAGTEQFTAM-RDLYIKNGQGFVLVYSIT 83 (163)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCchhhh--EEEEEEECCEEEEEEEEECCCccccchH-HHHHhhcCCEEEEEEECC
Confidence 699999999998554 444444433332211 2222333467789999999999999999 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (163)
T cd04136 84 SQ 85 (163)
T ss_pred CH
Confidence 63
No 36
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.84 E-value=1.7e-20 Score=103.85 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=58.8
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||+ +++.+.+.+.+.++............ ++..+++++||++|++++..+ +..+++++|++++|||++
T Consensus 6 vG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04117 6 IGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQERYQTI-TKQYYRRAQGIFLVYDIS 83 (161)
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHhHHhh-HHHHhcCCcEEEEEEECC
Confidence 699999999998 55555565554444443332222233 366789999999999999998 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (161)
T cd04117 84 SE 85 (161)
T ss_pred CH
Confidence 74
No 37
>PLN00023 GTP-binding protein; Provisional
Probab=99.84 E-value=1.6e-20 Score=113.39 Aligned_cols=80 Identities=20% Similarity=0.329 Sum_probs=59.1
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeec------------CCceeEEEEEecCCCccccccchhhhhc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIA------------NSSFLQYQLWDCPGQMDFQDFDAELIFA 67 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~D~~G~~~~~~~~~~~~~~ 67 (81)
+|++|||||||++.+. +.+...+.+++..+.......+. +++.+.++|||++|+++|+.+ +..||+
T Consensus 27 LGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL-~~~yyr 105 (334)
T PLN00023 27 VGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC-RSLFYS 105 (334)
T ss_pred ECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh-hHHhcc
Confidence 6999999999996554 44544444444444332322222 135688999999999999999 559999
Q ss_pred cCCEEEEEEEccCC
Q psy9524 68 RCGALIFVIDTSMG 81 (81)
Q Consensus 68 ~~~~~i~v~D~~~~ 81 (81)
+++++|+|||++++
T Consensus 106 ~AdgiILVyDITdr 119 (334)
T PLN00023 106 QINGVIFVHDLSQR 119 (334)
T ss_pred CCCEEEEEEeCCCH
Confidence 99999999999873
No 38
>KOG0088|consensus
Probab=99.84 E-value=7.9e-22 Score=108.33 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=66.1
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|..-||||||+ |+..++|......+....+...+..+. +....++||||+||++|..+-| .||++++++++|||++
T Consensus 19 LGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~e-d~ra~L~IWDTAGQErfHALGP-IYYRgSnGalLVyDIT 96 (218)
T KOG0088|consen 19 LGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVE-DCRADLHIWDTAGQERFHALGP-IYYRGSNGALLVYDIT 96 (218)
T ss_pred EcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccc-cceeeeeeeeccchHhhhccCc-eEEeCCCceEEEEecc
Confidence 588999999995 999999988877666655443443344 6889999999999999999966 9999999999999999
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 97 Dr 98 (218)
T KOG0088|consen 97 DR 98 (218)
T ss_pred ch
Confidence 84
No 39
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.84 E-value=2.3e-20 Score=103.03 Aligned_cols=78 Identities=19% Similarity=0.201 Sum_probs=57.6
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||+ +++.+.+.+...++.. .. +......++..+.+++||++|+++|..+ +..++++++++++|||++
T Consensus 7 ~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~~i~v~d~~ 83 (163)
T cd04176 7 LGSGGVGKSALTVQFVSGTFIEKYDPTIE-DF-YRKEIEVDSSPSVLEILDTAGTEQFASM-RDLYIKNGQGFIVVYSLV 83 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCchh-he-EEEEEEECCEEEEEEEEECCCcccccch-HHHHHhhCCEEEEEEECC
Confidence 699999999998 5555555444333222 22 2222333467788999999999999999 669999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (163)
T cd04176 84 NQ 85 (163)
T ss_pred CH
Confidence 74
No 40
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.84 E-value=1.9e-20 Score=103.35 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=58.5
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.++ +.+.+.++...+......... +..+.+++||++|++.+..+ ++.++++++++|+|||++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~ilv~D~~ 83 (168)
T cd04119 6 MGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-NKEVRVNFFDLSGHPEYLEV-RNEFYKDTQGVLLVYDVT 83 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CeEEEEEEEECCccHHHHHH-HHHHhccCCEEEEEEECC
Confidence 699999999999666444 444443333333323333333 67899999999999999988 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (168)
T cd04119 84 DR 85 (168)
T ss_pred CH
Confidence 63
No 41
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=2.7e-20 Score=104.92 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.++ +...+.++..... .......++..+.+++||++|++++..+ +..+++++|++|+|||++
T Consensus 6 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~ii~v~d~~ 83 (187)
T cd04132 6 VGDGGCGKTCLLIVYSQGKFPEEYVPTVFENY-VTNIQGPNGKIIELALWDTAGQEEYDRL-RPLSYPDVDVLLICYAVD 83 (187)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCCCCCeeeeee-EEEEEecCCcEEEEEEEECCCchhHHHH-HHHhCCCCCEEEEEEECC
Confidence 699999999999666444 4444433333222 2222222367789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (187)
T cd04132 84 NP 85 (187)
T ss_pred CH
Confidence 73
No 42
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.83 E-value=2.6e-20 Score=104.25 Aligned_cols=78 Identities=12% Similarity=0.219 Sum_probs=58.7
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||+ +++.+.+...+.++.... +......++..+.+++||++|+++|+.+ +..+++.++++|+|||++
T Consensus 8 vG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-~~~~~~~~d~~ilv~d~~ 84 (172)
T cd04141 8 LGAGGVGKSAVTMQFISHSFPDYHDPTIEDA--YKQQARIDNEPALLDILDTAGQAEFTAM-RDQYMRCGEGFIICYSVT 84 (172)
T ss_pred ECCCCCcHHHHHHHHHhCCCCCCcCCcccce--EEEEEEECCEEEEEEEEeCCCchhhHHH-hHHHhhcCCEEEEEEECC
Confidence 699999999998 555565554443333322 2222233477789999999999999999 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (172)
T cd04141 85 DR 86 (172)
T ss_pred ch
Confidence 74
No 43
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.83 E-value=2.8e-20 Score=105.40 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++.... +......++..+.+++||++|++.|..+ +..++++++++|+|||++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~--~~~~i~~~~~~~~l~i~Dt~G~~~~~~l-~~~~~~~a~~~ilv~dv~ 82 (189)
T cd04134 6 LGDGACGKTSLLNVFTRGYFPQVYEPTVFEN--YVHDIFVDGLHIELSLWDTAGQEEFDRL-RSLSYADTDVIMLCFSVD 82 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCccCCcceee--eEEEEEECCEEEEEEEEECCCChhcccc-ccccccCCCEEEEEEECC
Confidence 699999999999655444 433333332222 2222223467789999999999999998 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (189)
T cd04134 83 SP 84 (189)
T ss_pred CH
Confidence 74
No 44
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.83 E-value=3.9e-20 Score=103.05 Aligned_cols=78 Identities=14% Similarity=0.241 Sum_probs=56.9
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++.... +......++..+.+++||++|++.|..+. ..+++++|++|+|||++
T Consensus 4 ~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 4 VGDGAVGKTCLLISYTTNAFPEDYVPTVFEN--YSADVEVDGKPVELGLWDTAGQEDYDRLR-PLSYPDTDVFLICFSVD 80 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcEEee--eeEEEEECCEEEEEEEEECCCCcccchhc-hhhcCCCCEEEEEEECC
Confidence 699999999999555 444444333333222 22222234777899999999999999984 48999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 81 ~~ 82 (174)
T smart00174 81 SP 82 (174)
T ss_pred CH
Confidence 73
No 45
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.83 E-value=3.5e-20 Score=102.65 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+.++...+........ .+..+++++||++|++++..+ +..++++++++|+|||++
T Consensus 8 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~ 85 (166)
T cd01869 8 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIIVYDVT 85 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-HHHHhCcCCEEEEEEECc
Confidence 699999999999666543 44433333333222222222 366789999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 86 ~~ 87 (166)
T cd01869 86 DQ 87 (166)
T ss_pred CH
Confidence 73
No 46
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.83 E-value=2.2e-20 Score=104.05 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=58.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++++.+++..... ++.+.....+. ...+++++||++|+++++.+ |..|+++++++|+|||+++
T Consensus 5 ~G~~~~GKTsl~~~l~~~~~~~~~----~t~g~~~~~~~-~~~~~~~i~D~~G~~~~~~~-~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 5 VGLDNAGKTTLVSALQGEIPKKVA----PTVGFTPTKLR-LDKYEVCIFDLGGGANFRGI-WVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccc----CcccceEEEEE-ECCEEEEEEECCCcHHHHHH-HHHHHcCCCEEEEEEECCc
Confidence 699999999999888776544333 33333333343 45688999999999999998 6799999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 79 ~ 79 (167)
T cd04161 79 D 79 (167)
T ss_pred h
Confidence 3
No 47
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.83 E-value=1.9e-20 Score=105.63 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=57.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+....... ..++.+....... .+.+.+++||++|+++++.+ |..|++++|++|+|||+++
T Consensus 23 vG~~~~GKTsl~~~l~~~~~~~----~~pt~g~~~~~~~-~~~~~~~i~D~~Gq~~~~~~-~~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 23 VGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVE-YKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 96 (181)
T ss_pred ECCCCCCHHHHHHHHccCCCcc----ccCCcceeEEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhccCCEEEEEEeCCc
Confidence 6999999999997664332222 2344444444443 56789999999999999998 7799999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 97 ~ 97 (181)
T PLN00223 97 R 97 (181)
T ss_pred H
Confidence 3
No 48
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=2.5e-20 Score=105.60 Aligned_cols=78 Identities=14% Similarity=0.232 Sum_probs=57.5
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++.... +......++..+.+++||++|+++|..+ +..+++++|++|+|||++
T Consensus 5 vG~~~vGKTsli~~l~~~~f~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~~ilv~d~~ 81 (190)
T cd04144 5 LGDGGVGKTALTIQLCLNHFVETYDPTIEDS--YRKQVVVDGQPCMLEVLDTAGQEEYTAL-RDQWIREGEGFILVYSIT 81 (190)
T ss_pred ECCCCCCHHHHHHHHHhCCCCccCCCchHhh--EEEEEEECCEEEEEEEEECCCchhhHHH-HHHHHHhCCEEEEEEECC
Confidence 699999999999655 445544433333222 2222233467788999999999999998 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 82 ~~ 83 (190)
T cd04144 82 SR 83 (190)
T ss_pred CH
Confidence 63
No 49
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.83 E-value=3.1e-20 Score=104.00 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeec---------CCceeEEEEEecCCCccccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIA---------NSSFLQYQLWDCPGQMDFQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ 70 (81)
+|+++||||||++.+. +.+.+...++...+......... .+..+.+++||++|+++|..+ +..++++++
T Consensus 10 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~ 88 (180)
T cd04127 10 LGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL-TTAFFRDAM 88 (180)
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH-HHHHhCCCC
Confidence 6999999999996654 44444443333322221111111 145688999999999999998 559999999
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++++|||++++
T Consensus 89 ~~i~v~d~~~~ 99 (180)
T cd04127 89 GFLLIFDLTNE 99 (180)
T ss_pred EEEEEEECCCH
Confidence 99999999863
No 50
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.83 E-value=4.3e-20 Score=102.12 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=57.2
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.+...++..... ......++..+.+++||++|++++..+ +..++++++++++|||++
T Consensus 7 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d~~ 83 (164)
T cd04175 7 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY--RKQVEVDGQQCMLEILDTAGTEQFTAM-RDLYMKNGQGFVLVYSIT 83 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcchheE--EEEEEECCEEEEEEEEECCCcccchhH-HHHHHhhCCEEEEEEECC
Confidence 699999999998544 4545444433333322 222223467789999999999999999 569999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (164)
T cd04175 84 A 84 (164)
T ss_pred C
Confidence 6
No 51
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.83 E-value=4.1e-20 Score=102.05 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=60.1
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|+++||||||++.+.. .+.+.+.++..............+..+++.+||++|++.+..+ +..+++++|++++|||
T Consensus 6 vG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d 84 (164)
T cd04101 6 VGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDM-VSNYWESPSVFILVYD 84 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHH-HHHHhCCCCEEEEEEE
Confidence 69999999999977753 3555554444444333333333467799999999999999988 4589999999999999
Q ss_pred ccCC
Q psy9524 78 TSMG 81 (81)
Q Consensus 78 ~~~~ 81 (81)
++++
T Consensus 85 ~~~~ 88 (164)
T cd04101 85 VSNK 88 (164)
T ss_pred CcCH
Confidence 9863
No 52
>PTZ00369 Ras-like protein; Provisional
Probab=99.83 E-value=4.1e-20 Score=104.66 Aligned_cols=78 Identities=12% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++...+ +......++..+.+++||++|+++|..+ +..+++.++++++|||++
T Consensus 11 iG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~l-~~~~~~~~d~iilv~D~s 87 (189)
T PTZ00369 11 VGGGGVGKSALTIQFIQNHFIDEYDPTIEDS--YRKQCVIDEETCLLDILDTAGQEEYSAM-RDQYMRTGQGFLCVYSIT 87 (189)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcCCchhhE--EEEEEEECCEEEEEEEEeCCCCccchhh-HHHHhhcCCEEEEEEECC
Confidence 699999999998555 444444443333332 2222233477789999999999999999 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 88 ~~ 89 (189)
T PTZ00369 88 SR 89 (189)
T ss_pred CH
Confidence 74
No 53
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.83 E-value=2.9e-20 Score=103.33 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+ .++.++....+. ...+++++||++|+++++.+ +..++++++++|+|||++
T Consensus 5 vG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~ii~V~D~t 78 (164)
T cd04162 5 LGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAIP-TQDAIMELLEIGGSQNLRKY-WKRYLSGSQGLIFVVDSA 78 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEEe-eCCeEEEEEECCCCcchhHH-HHHHHhhCCEEEEEEECC
Confidence 699999999999666544 33333 233333333343 66789999999999999998 669999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 79 ~~ 80 (164)
T cd04162 79 DS 80 (164)
T ss_pred CH
Confidence 73
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.83 E-value=4.4e-20 Score=102.39 Aligned_cols=79 Identities=19% Similarity=0.246 Sum_probs=57.5
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....++...... ......++..+.+++||++|++++..+ +..++++++++++|||++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~l~Dt~g~~~~~~~-~~~~~~~~~~~l~v~d~~ 84 (165)
T cd01865 7 IGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFK-VKTVFRNDKRVKLQIWDTAGQERYRTI-TTAYYRGAMGFILMYDIT 84 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCChHHHHHH-HHHHccCCcEEEEEEECC
Confidence 699999999999666444 43333333322221 222233466789999999999999998 669999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (165)
T cd01865 85 NE 86 (165)
T ss_pred CH
Confidence 63
No 55
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=5.5e-20 Score=105.87 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ ++.....++...........+.++..+++++||++|++++..+ +..++++++++|+|||++
T Consensus 8 vG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~iilv~D~~ 86 (211)
T cd04111 8 IGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSI-TRSYYRNSVGVLLVFDIT 86 (211)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHH-HHHHhcCCcEEEEEEECC
Confidence 69999999999966644 4444333333322222222233466789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 87 ~~ 88 (211)
T cd04111 87 NR 88 (211)
T ss_pred CH
Confidence 74
No 56
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.82 E-value=5.1e-20 Score=102.34 Aligned_cols=79 Identities=16% Similarity=0.292 Sum_probs=57.5
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+.+...++..... .......+++.+++++||++|++++..+ +..+++.++++++|||++
T Consensus 11 vG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 88 (170)
T cd04116 11 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF-LNKDLEVDGHFVTLQIWDTAGQERFRSL-RTPFYRGSDCCLLTFAVD 88 (170)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcCcCCceeeEE-EEEEEEECCeEEEEEEEeCCChHHHHHh-HHHHhcCCCEEEEEEECC
Confidence 6999999999996554 444443333322221 1222223478899999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 89 ~~ 90 (170)
T cd04116 89 DS 90 (170)
T ss_pred CH
Confidence 63
No 57
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.82 E-value=9.3e-20 Score=101.42 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++...... ......+...+.+.+||++|++++..+ +..+++.+|++|+|||++
T Consensus 6 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 83 (166)
T cd00877 6 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLDFHTNRGKIRFNVWDTAGQEKFGGL-RDGYYIGGQCAIIMFDVT 83 (166)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEE-EEEEEECCEEEEEEEEECCCChhhccc-cHHHhcCCCEEEEEEECC
Confidence 699999999999655 44444444333333221 222222467789999999999999888 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (166)
T cd00877 84 SR 85 (166)
T ss_pred CH
Confidence 63
No 58
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.82 E-value=2.7e-20 Score=103.86 Aligned_cols=75 Identities=24% Similarity=0.360 Sum_probs=56.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+........ .++.+....... ...+++++||++|+++++.+ +..++++++++|+|||+++
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~~~----~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~a~~ii~v~D~t~ 88 (168)
T cd04149 15 LGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVT-YKNVKFNVWDVGGQDKIRPL-WRHYYTGTQGLIFVVDSAD 88 (168)
T ss_pred ECcCCCCHHHHHHHHccCCCccc----cCCcccceEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhccCCEEEEEEeCCc
Confidence 69999999999977644322222 233333333333 46689999999999999888 6689999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 89 ~ 89 (168)
T cd04149 89 R 89 (168)
T ss_pred h
Confidence 3
No 59
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.82 E-value=6e-20 Score=102.01 Aligned_cols=79 Identities=18% Similarity=0.301 Sum_probs=58.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+.+.+.++............ ++..+.+++||++|++++..+ +..+++++|++++|||++
T Consensus 9 vG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~~~~~-~~~~~~~ad~~i~v~d~~ 86 (167)
T cd01867 9 IGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIEL-DGKKIKLQIWDTAGQERFRTI-TTAYYRGAMGIILVYDIT 86 (167)
T ss_pred ECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEE-CCEEEEEEEEeCCchHHHHHH-HHHHhCCCCEEEEEEECc
Confidence 699999999999655 44455544444333322222223 366789999999999999988 558999999999999997
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 87 ~~ 88 (167)
T cd01867 87 DE 88 (167)
T ss_pred CH
Confidence 63
No 60
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.82 E-value=7e-20 Score=104.49 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=57.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+.++............ ++..+.+.+||++|++.+..+ +..++++++++++|||++
T Consensus 12 vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~-~~~~~~~a~~iilv~D~~ 89 (199)
T cd04110 12 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGERVKLQIWDTAGQERFRTI-TSTYYRGTHGVIVVYDVT 89 (199)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEE-CCEEEEEEEEeCCCchhHHHH-HHHHhCCCcEEEEEEECC
Confidence 699999999999666444 43333333332222222222 366788999999999999988 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 90 ~~ 91 (199)
T cd04110 90 NG 91 (199)
T ss_pred CH
Confidence 74
No 61
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.82 E-value=3.8e-20 Score=102.35 Aligned_cols=73 Identities=25% Similarity=0.416 Sum_probs=55.6
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+. .. .++.+....... ...+++++||++|++++..+ +..+++++|++|+|||++
T Consensus 6 ~G~~~~GKTsli~~l~~~~~~-~~----~pt~g~~~~~~~-~~~~~~~l~D~~G~~~~~~~-~~~~~~~ad~~i~v~D~~ 78 (159)
T cd04150 6 VGLDAAGKTTILYKLKLGEIV-TT----IPTIGFNVETVE-YKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSN 78 (159)
T ss_pred ECCCCCCHHHHHHHHhcCCCc-cc----CCCCCcceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhcCCCEEEEEEeCC
Confidence 699999999999666 44443 22 334333333333 45788999999999999988 669999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 79 ~ 79 (159)
T cd04150 79 D 79 (159)
T ss_pred C
Confidence 6
No 62
>KOG0083|consensus
Probab=99.82 E-value=3.7e-21 Score=103.29 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=58.8
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCce-eeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNET-LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++++|||+|+ |+-.+.|..... ++....+ -++..-.+++.+++++|||+|||+|+..+. .||+++|+++++||+
T Consensus 3 lgds~~gktcllir~kdgafl~~~fistvgid~-rnkli~~~~~kvklqiwdtagqerfrsvt~-ayyrda~allllydi 80 (192)
T KOG0083|consen 3 LGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDF-RNKLIDMDDKKVKLQIWDTAGQERFRSVTH-AYYRDADALLLLYDI 80 (192)
T ss_pred cccCccCceEEEEEeccCceecCceeeeeeecc-ccceeccCCcEEEEEEeeccchHHHhhhhH-hhhcccceeeeeeec
Confidence 699999999996 655444444432 2223332 233333358999999999999999999966 999999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
.|
T Consensus 81 an 82 (192)
T KOG0083|consen 81 AN 82 (192)
T ss_pred cc
Confidence 86
No 63
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.82 E-value=3.5e-20 Score=104.10 Aligned_cols=75 Identities=28% Similarity=0.368 Sum_probs=63.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+.++||||+++.+... +...+.||.+++...+. ...+.+.+||.+|++.++.+ |+.|+++++++|+|+|.+|
T Consensus 20 lGl~~sGKTtll~~l~~~----~~~~~~pT~g~~~~~i~-~~~~~~~~~d~gG~~~~~~~-w~~y~~~~~~iIfVvDssd 93 (175)
T PF00025_consen 20 LGLDGSGKTTLLNRLKNG----EISETIPTIGFNIEEIK-YKGYSLTIWDLGGQESFRPL-WKSYFQNADGIIFVVDSSD 93 (175)
T ss_dssp EESTTSSHHHHHHHHHSS----SEEEEEEESSEEEEEEE-ETTEEEEEEEESSSGGGGGG-GGGGHTTESEEEEEEETTG
T ss_pred ECCCccchHHHHHHhhhc----cccccCcccccccceee-eCcEEEEEEecccccccccc-ceeeccccceeEEEEeccc
Confidence 599999999999887543 33346778888888776 57789999999999999999 8899999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 94 ~ 94 (175)
T PF00025_consen 94 P 94 (175)
T ss_dssp G
T ss_pred c
Confidence 3
No 64
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.82 E-value=1e-19 Score=99.92 Aligned_cols=77 Identities=13% Similarity=0.236 Sum_probs=56.5
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+.....++.... +......++..+.+++||++|+++++.+ +..++++++++++|||++
T Consensus 7 iG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~l-~~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 7 VGAGGVGKSALTIQLIQNHFVDEYDPTIEDS--YRKQVVIDGETCLLDILDTAGQEEYSAM-RDQYMRTGEGFLCVFAIN 83 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCcCCcCCcchhe--EEEEEEECCEEEEEEEEECCCCcchHHH-HHHHHhcCCEEEEEEECC
Confidence 69999999999966644 4444433333322 2222223366788999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (162)
T cd04138 84 S 84 (162)
T ss_pred C
Confidence 6
No 65
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=5.4e-20 Score=103.16 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=56.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+. .. .+|.+....... .+.+++++||++|+++++.+ +..|+++++++|+|||++
T Consensus 19 ~G~~~~GKTsL~~~~~~~~~~-~~----~~t~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~-~~~~~~~ad~ii~v~D~t 91 (175)
T smart00177 19 VGLDAAGKTTILYKLKLGESV-TT----IPTIGFNVETVT-YKNISFTVWDVGGQDKIRPL-WRHYYTNTQGLIFVVDSN 91 (175)
T ss_pred EcCCCCCHHHHHHHHhcCCCC-Cc----CCccccceEEEE-ECCEEEEEEECCCChhhHHH-HHHHhCCCCEEEEEEECC
Confidence 699999999999666 34432 22 234443333333 45689999999999999998 668999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 92 ~~ 93 (175)
T smart00177 92 DR 93 (175)
T ss_pred CH
Confidence 74
No 66
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.82 E-value=1.3e-19 Score=101.13 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=57.7
Q ss_pred CCCCCCcHhHHHHHH-hccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+ .+.+. ..+.++............ ++..+.+.+||++|++.+..+ +..+++++|++++|||+
T Consensus 10 vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~~~-~~~~~~~~d~~llv~d~ 87 (169)
T cd01892 10 LGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAILL-NDAELAACDVACLVYDS 87 (169)
T ss_pred ECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEE-CCeEEEEEEEecCCccccccc-chhhhhcCCEEEEEEeC
Confidence 699999999999555 44444 344343333332223333 367788999999999999888 44899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 88 ~~~ 90 (169)
T cd01892 88 SDP 90 (169)
T ss_pred CCH
Confidence 874
No 67
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.81 E-value=1.1e-19 Score=101.19 Aligned_cols=79 Identities=20% Similarity=0.339 Sum_probs=56.3
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-cchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-FDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+ .+.+......+...........+ ++..+.+++||++|++.++. + +..+++++|++++|||+
T Consensus 8 vG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~d~~i~v~d~ 85 (170)
T cd04115 8 IGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEI-DGERIKVQLWDTAGQERFRKSM-VQHYYRNVHAVVFVYDV 85 (170)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEE-CCeEEEEEEEeCCChHHHHHhh-HHHhhcCCCEEEEEEEC
Confidence 699999999999555 44444333333332222222233 36778999999999998874 5 55899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 86 ~~~ 88 (170)
T cd04115 86 TNM 88 (170)
T ss_pred CCH
Confidence 874
No 68
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.81 E-value=1.2e-19 Score=101.26 Aligned_cols=78 Identities=15% Similarity=0.181 Sum_probs=57.9
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+...+.++... .+......++..+++++||++|++++..+ +..+++++|++|+|||++
T Consensus 6 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~a~~~i~v~d~~ 82 (173)
T cd04130 6 VGDGAVGKTSLIVSYTTNGYPTEYVPTAFD--NFSVVVLVDGKPVRLQLCDTAGQDEFDKL-RPLCYPDTDVFLLCFSVV 82 (173)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceee--eeeEEEEECCEEEEEEEEECCCChhhccc-cccccCCCcEEEEEEECC
Confidence 699999999998544 55555544433322 22233333467789999999999999998 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (173)
T cd04130 83 NP 84 (173)
T ss_pred CH
Confidence 74
No 69
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.81 E-value=1.7e-19 Score=102.11 Aligned_cols=79 Identities=14% Similarity=0.262 Sum_probs=56.8
Q ss_pred CCCCCCcHhHHHHHH-hccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|+++||||||++.+ .+++... +..+............ ++..+.+++||++|++++..+ +..++++++++++|||+
T Consensus 6 vG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~d~iilv~d~ 83 (193)
T cd04118 6 LGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERYEAM-SRIYYRGAKAAIVCYDL 83 (193)
T ss_pred ECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEE-CCEEEEEEEEECCCchhhhhh-hHhhcCCCCEEEEEEEC
Confidence 699999999999555 4444432 3223322222222233 467789999999999999988 55899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 84 ~~~ 86 (193)
T cd04118 84 TDS 86 (193)
T ss_pred CCH
Confidence 863
No 70
>PLN03118 Rab family protein; Provisional
Probab=99.81 E-value=1.3e-19 Score=104.14 Aligned_cols=79 Identities=18% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+.......++...+........ ++..+.+.+||++|+++|..+ +..+++.++++|+|||+++
T Consensus 20 vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 20 IGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERFRTL-TSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred ECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEE-CCEEEEEEEEECCCchhhHHH-HHHHHhcCCEEEEEEECCC
Confidence 69999999999976655544333322222222222222 366789999999999999998 5599999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 98 ~ 98 (211)
T PLN03118 98 R 98 (211)
T ss_pred H
Confidence 3
No 71
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.81 E-value=1.3e-19 Score=99.85 Aligned_cols=80 Identities=18% Similarity=0.248 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeec-CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIA-NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|+++||||||++.+.+. +.+...++...........+. .+..+++++||++|++++..+ +..++++++++++|||+
T Consensus 6 vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~v~v~d~ 84 (162)
T cd04106 6 VGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAI-TKAYYRGAQACILVFST 84 (162)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHh-HHHHhcCCCEEEEEEEC
Confidence 699999999999666544 433332222222211111111 156789999999999999998 55899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 85 ~~~ 87 (162)
T cd04106 85 TDR 87 (162)
T ss_pred CCH
Confidence 863
No 72
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.81 E-value=1.2e-19 Score=102.32 Aligned_cols=79 Identities=20% Similarity=0.276 Sum_probs=54.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.........++.............+...+.+++||++|+++++.+ +..++++++++++|||+++
T Consensus 9 vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~D~~~ 87 (183)
T cd04152 9 LGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPL-WKSYTRCTDGIVFVVDSVD 87 (183)
T ss_pred ECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHH-HHHHhccCCEEEEEEECCC
Confidence 699999999999666443222222222222111111122346789999999999999888 6689999999999999986
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=1.3e-19 Score=100.35 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+...+..+........... .++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 9 vG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~d~~llv~d~~ 86 (165)
T cd01864 9 IGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLE-IEGKRVKLQIWDTAGQERFRTI-TQSYYRSANGAIIAYDIT 86 (165)
T ss_pred ECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEE-ECCEEEEEEEEECCChHHHHHH-HHHHhccCCEEEEEEECc
Confidence 6999999999996554 444444333322222222222 2356688999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 87 ~~ 88 (165)
T cd01864 87 RR 88 (165)
T ss_pred CH
Confidence 74
No 74
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=1.5e-19 Score=99.85 Aligned_cols=78 Identities=14% Similarity=0.215 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+.....++.. .. +......++..+.+++||++|++++..+ +..++++++++++|||++
T Consensus 6 ~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 82 (164)
T smart00173 6 LGSGGVGKSALTIQFVQGHFVDDYDPTIE-DS-YRKQIEIDGEVCLLDILDTAGQEEFSAM-RDQYMRTGEGFLLVYSIT 82 (164)
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCchh-hh-EEEEEEECCEEEEEEEEECCCcccchHH-HHHHHhhCCEEEEEEECC
Confidence 69999999999966644 44333333222 21 2223333467789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (164)
T smart00173 83 DR 84 (164)
T ss_pred CH
Confidence 63
No 75
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.81 E-value=1.8e-19 Score=99.30 Aligned_cols=79 Identities=15% Similarity=0.282 Sum_probs=56.8
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+......+............ ++..+.+++||++|++++..+ +..++++++++++|||++
T Consensus 6 ~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 83 (161)
T cd04113 6 IGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRV-GGKRVKLQIWDTAGQERFRSV-TRSYYRGAAGALLVYDIT 83 (161)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEECcchHHHHHh-HHHHhcCCCEEEEEEECC
Confidence 6999999999996664 4444433333332222222222 366789999999999999888 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (161)
T cd04113 84 NR 85 (161)
T ss_pred CH
Confidence 73
No 76
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.81 E-value=2.5e-19 Score=99.35 Aligned_cols=78 Identities=18% Similarity=0.192 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+...+.++...+ . ......+...+.+++||++|+++|..+ +..+++.++++|+|||++
T Consensus 7 vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~-~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~ilv~d~~ 83 (165)
T cd04140 7 FGAGGVGKSSLVLRFVKGTFRESYIPTIEDT-Y-RQVISCSKNICTLQITDTTGSHQFPAM-QRLSISKGHAFILVYSVT 83 (165)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCcchhe-E-EEEEEECCEEEEEEEEECCCCCcchHH-HHHHhhcCCEEEEEEECC
Confidence 699999999999555 444544444433322 2 222222367789999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (165)
T cd04140 84 SK 85 (165)
T ss_pred CH
Confidence 63
No 77
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.80 E-value=1.2e-19 Score=99.86 Aligned_cols=76 Identities=26% Similarity=0.386 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+..... ....++.++...... ...+++++||++|+++++.+ +..++++++++|+|+|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~--~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 5 VGLDNSGKTTIINQLKPENAQS--QIIVPTVGFNVESFE-KGNLSFTAFDMSGQGKYRGL-WEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred ECCCCCCHHHHHHHHcccCCCc--ceecCccccceEEEE-ECCEEEEEEECCCCHhhHHH-HHHHHccCCEEEEEEeCCc
Confidence 6999999999997776542111 112334343333333 56788999999999999998 6699999999999999986
No 78
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=2.4e-19 Score=101.29 Aligned_cols=79 Identities=20% Similarity=0.325 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....++...+........ ++..+.+++||++|++.+..+ +..++++++++|+|||++
T Consensus 6 ~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~-~~~~~~~~d~iilv~d~~ 83 (188)
T cd04125 6 IGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYI-ENKIIKLQIWDTNGQERFRSL-NNSYYRGAHGYLLVYDVT 83 (188)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHhh-HHHHccCCCEEEEEEECc
Confidence 699999999999666444 43323333333322222222 366789999999999999988 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (188)
T cd04125 84 DQ 85 (188)
T ss_pred CH
Confidence 63
No 79
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.80 E-value=2.5e-19 Score=99.66 Aligned_cols=79 Identities=19% Similarity=0.320 Sum_probs=57.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +...+..+...+........ ++..+.+.+||++|++++..+ ...+++.+|++++|||++
T Consensus 10 vG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~il~v~d~~ 87 (168)
T cd01866 10 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDIT 87 (168)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-HHHHhccCCEEEEEEECC
Confidence 699999999999766544 33333333333322222223 366789999999999999988 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 88 ~~ 89 (168)
T cd01866 88 RR 89 (168)
T ss_pred CH
Confidence 63
No 80
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.80 E-value=2.6e-19 Score=98.52 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=56.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +...+.+............. ++..+++++||++|++++..+ +..+++.++++++|||++
T Consensus 6 iG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~-~~~~~~~~~~ii~v~d~~ 83 (161)
T cd01861 6 LGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQERFRSL-IPSYIRDSSVAVVVYDIT 83 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-HHHHhccCCEEEEEEECc
Confidence 699999999999766443 33333333332222222223 356688999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (161)
T cd01861 84 NR 85 (161)
T ss_pred CH
Confidence 63
No 81
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.80 E-value=3.7e-19 Score=98.09 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+ .+.....++.... +......++..+++++||++|++++..+ +..++++++++++|||++
T Consensus 8 ~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~ilv~d~~ 84 (164)
T cd04145 8 VGGGGVGKSALTIQFIQSYFVTDYDPTIEDS--YTKQCEIDGQWAILDILDTAGQEEFSAM-REQYMRTGEGFLLVFSVT 84 (164)
T ss_pred ECCCCCcHHHHHHHHHhCCCCcccCCCccce--EEEEEEECCEEEEEEEEECCCCcchhHH-HHHHHhhCCEEEEEEECC
Confidence 69999999999865544 3333332222221 2222223366789999999999999998 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (164)
T cd04145 85 DR 86 (164)
T ss_pred CH
Confidence 63
No 82
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.80 E-value=3.3e-19 Score=98.60 Aligned_cols=78 Identities=14% Similarity=0.253 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....++...+.. ......++..+.+++||++|++++..+ +..++++++++|+|||++
T Consensus 9 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 86 (165)
T cd01868 9 IGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFA-TRSIQIDGKTIKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDIT 86 (165)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE-EEEEEECCEEEEEEEEeCCChHHHHHH-HHHHHCCCCEEEEEEECc
Confidence 699999999999666544 33333333322222 222222366688999999999999998 458999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 ~ 87 (165)
T cd01868 87 K 87 (165)
T ss_pred C
Confidence 6
No 83
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.80 E-value=2e-19 Score=101.46 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=55.6
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+. .. .+|.+.....+. ...+.+++||++|+++++.+ +..+++++|++|+|||++
T Consensus 23 vG~~~vGKTsli~~~~~~~~~-~~----~~T~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~-~~~~~~~ad~iI~v~D~t 95 (182)
T PTZ00133 23 VGLDAAGKTTILYKLKLGEVV-TT----IPTIGFNVETVE-YKNLKFTMWDVGGQDKLRPL-WRHYYQNTNGLIFVVDSN 95 (182)
T ss_pred EcCCCCCHHHHHHHHhcCCcc-cc----CCccccceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhcCCCEEEEEEeCC
Confidence 6999999999996663 4343 22 234333333333 46689999999999999998 669999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 96 ~ 96 (182)
T PTZ00133 96 D 96 (182)
T ss_pred C
Confidence 6
No 84
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.80 E-value=2e-19 Score=99.15 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=59.0
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+.+.+.++...... ......++..+.+++||++|+++|..+ +..++++++++|+|||++
T Consensus 5 vG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~-~~~~~~~~~~~ii~fd~~ 82 (162)
T PF00071_consen 5 VGDSGVGKTSLINRLINGEFPENYIPTIGIDSY-SKEVSIDGKPVNLEIWDTSGQERFDSL-RDIFYRNSDAIIIVFDVT 82 (162)
T ss_dssp EESTTSSHHHHHHHHHHSSTTSSSETTSSEEEE-EEEEEETTEEEEEEEEEETTSGGGHHH-HHHHHTTESEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhhccccccccccccccc-ccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence 699999999999555 45555555444323322 222333488899999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (162)
T PF00071_consen 83 DE 84 (162)
T ss_dssp BH
T ss_pred cc
Confidence 63
No 85
>PLN03110 Rab GTPase; Provisional
Probab=99.80 E-value=3.9e-19 Score=102.65 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+.....++......... ...++..+.++|||++|++++..+ +..++++++++|+|||++
T Consensus 18 vG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~-v~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~~~~ilv~d~~ 95 (216)
T PLN03110 18 IGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRT-LQVEGKTVKAQIWDTAGQERYRAI-TSAYYRGAVGALLVYDIT 95 (216)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEE-EEECCEEEEEEEEECCCcHHHHHH-HHHHhCCCCEEEEEEECC
Confidence 69999999999965544 443333333222222222 222467789999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 96 ~~ 97 (216)
T PLN03110 96 KR 97 (216)
T ss_pred Ch
Confidence 63
No 86
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.80 E-value=3.5e-19 Score=100.98 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+. +++... ...+...+.. ......++..++++|||++|++++..+ +..+++.++++|+|||+
T Consensus 6 vG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~ad~~i~v~D~ 83 (191)
T cd04112 6 LGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFR-NKVVTVDGVKVKLQIWDTAGQERFRSV-THAYYRDAHALLLLYDI 83 (191)
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCcCCcccceeE-EEEEEECCEEEEEEEEeCCCcHHHHHh-hHHHccCCCEEEEEEEC
Confidence 6999999999995554 444332 2223222221 222223467789999999999999988 44899999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 84 ~~ 85 (191)
T cd04112 84 TN 85 (191)
T ss_pred CC
Confidence 86
No 87
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.79 E-value=3.2e-19 Score=104.87 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=57.6
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+...+.++.. +.......+ +++.+.++|||++|++.|..+ +..++.++|++|+|||++
T Consensus 6 lG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i-~~~~~~l~I~Dt~G~~~~~~~-~~~~~~~ad~iIlVfdv~ 82 (247)
T cd04143 6 LGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSI-RGEVYQLDILDTSGNHPFPAM-RRLSILTGDVFILVFSLD 82 (247)
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEE-CCEEEEEEEEECCCChhhhHH-HHHHhccCCEEEEEEeCC
Confidence 699999999999655 5555554444333 222222223 367799999999999999888 448899999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (247)
T cd04143 83 NR 84 (247)
T ss_pred CH
Confidence 73
No 88
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.79 E-value=5e-19 Score=98.22 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.+....+...+.......+ .+..+++++||++|++.+..+ +..++++++++|++||++
T Consensus 6 iG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~ 83 (172)
T cd01862 6 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTV-DDKLVTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYDVT 83 (172)
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEE-CCEEEEEEEEeCCChHHHHhH-HHHHhcCCCEEEEEEECC
Confidence 699999999999666444 33333333232222222223 367788999999999999988 668999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (172)
T cd01862 84 N 84 (172)
T ss_pred C
Confidence 6
No 89
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.79 E-value=4.5e-19 Score=98.80 Aligned_cols=75 Identities=24% Similarity=0.370 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+.....+ .+|.+....... ...+++++||++|+++++.+ +..++++++++++|||+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~~----~~T~~~~~~~~~-~~~~~i~l~Dt~G~~~~~~~-~~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 5 LGLDGAGKTTILFKLKQDEFMQP----IPTIGFNVETVE-YKNLKFTIWDVGGKHKLRPL-WKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCc----CCcCceeEEEEE-ECCEEEEEEECCCChhcchH-HHHHhccCCEEEEEEeCCc
Confidence 69999999999977755533322 333333333333 46789999999999999888 6689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 79 ~ 79 (169)
T cd04158 79 R 79 (169)
T ss_pred H
Confidence 3
No 90
>KOG0081|consensus
Probab=99.79 E-value=1.7e-20 Score=103.19 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=61.2
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeec--------CCceeEEEEEecCCCccccccchhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIA--------NSSFLQYQLWDCPGQMDFQDFDAELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~ 71 (81)
+|++||||||++ ++..++|...-..+...+..-....+. ....+.+++|||+|||+|+.++. .||++|-+
T Consensus 15 LGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTT-AFfRDAMG 93 (219)
T KOG0081|consen 15 LGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTT-AFFRDAMG 93 (219)
T ss_pred hccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHH-HHHHhhcc
Confidence 699999999999 555666666655555554333333322 13458899999999999999955 99999999
Q ss_pred EEEEEEccCC
Q psy9524 72 LIFVIDTSMG 81 (81)
Q Consensus 72 ~i~v~D~~~~ 81 (81)
++++||++++
T Consensus 94 FlLiFDlT~e 103 (219)
T KOG0081|consen 94 FLLIFDLTSE 103 (219)
T ss_pred ceEEEeccch
Confidence 9999999875
No 91
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.79 E-value=6.3e-19 Score=97.17 Aligned_cols=79 Identities=19% Similarity=0.388 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.+...++...........+ +...+++.+||++|++++... +..++++++++++|+|++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~-~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 84 (163)
T cd01860 7 LGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNL-DDTTVKFEIWDTAGQERYRSL-APMYYRGAAAAIVVYDIT 84 (163)
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCchHHHHHH-HHHHhccCCEEEEEEECc
Confidence 699999999999666544 33323333332222222333 367789999999999999888 558999999999999997
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 85 ~~ 86 (163)
T cd01860 85 SE 86 (163)
T ss_pred CH
Confidence 63
No 92
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.79 E-value=7.7e-19 Score=97.62 Aligned_cols=78 Identities=15% Similarity=0.233 Sum_probs=56.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++.. .. +......++..+.+++||++|+++|..+ +..+++.++++++|||++
T Consensus 7 iG~~~~GKTsli~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~vlv~~~~ 83 (168)
T cd04177 7 LGAGGVGKSALTVQFVQNVFIESYDPTIE-DS-YRKQVEIDGRQCDLEILDTAGTEQFTAM-RELYIKSGQGFLLVYSVT 83 (168)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcch-he-EEEEEEECCEEEEEEEEeCCCcccchhh-hHHHHhhCCEEEEEEECC
Confidence 699999999999666443 3333322222 21 2222223467789999999999999999 559999999999999988
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (168)
T cd04177 84 SE 85 (168)
T ss_pred CH
Confidence 63
No 93
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.79 E-value=6.7e-19 Score=102.07 Aligned_cols=74 Identities=19% Similarity=0.224 Sum_probs=54.3
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+.+. ... ++.+....... ...+.+.+||++|++.|..+ +..++++++++|+|||++
T Consensus 6 vG~~~vGKTSLi~r~~~~~f~-~~~----~Tig~~~~~~~-~~~~~l~iwDt~G~e~~~~l-~~~~~~~ad~~IlV~Dvt 78 (220)
T cd04126 6 LGDMNVGKTSLLHRYMERRFK-DTV----STVGGAFYLKQ-WGPYNISIWDTAGREQFHGL-GSMYCRGAAAVILTYDVS 78 (220)
T ss_pred ECCCCCcHHHHHHHHhcCCCC-CCC----CccceEEEEEE-eeEEEEEEEeCCCcccchhh-HHHHhccCCEEEEEEECC
Confidence 699999999999555 44443 222 23222222222 35688999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 79 ~~ 80 (220)
T cd04126 79 NV 80 (220)
T ss_pred CH
Confidence 74
No 94
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.79 E-value=8.3e-19 Score=97.77 Aligned_cols=77 Identities=16% Similarity=0.308 Sum_probs=56.3
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+ .+.+.+.++..... ...... +++.+++.+||++|++.+..+ +..+++++|++++|||++
T Consensus 7 iG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~~~~ 83 (175)
T cd01870 7 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEV-DGKQVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSID 83 (175)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEE-CCEEEEEEEEeCCCchhhhhc-cccccCCCCEEEEEEECC
Confidence 69999999999965544 44444433333222 122223 367789999999999999988 448899999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (175)
T cd01870 84 S 84 (175)
T ss_pred C
Confidence 5
No 95
>KOG0097|consensus
Probab=99.79 E-value=2e-19 Score=97.59 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=62.2
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.|||||+|++ +...+|...-+.++...++.....+. +..++++|||++||++|+...+ .||+.+.+.+.|||++
T Consensus 17 igdmgvgkscllhqftekkfmadcphtigvefgtriievs-gqkiklqiwdtagqerfravtr-syyrgaagalmvydit 94 (215)
T KOG0097|consen 17 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTR-SYYRGAAGALMVYDIT 94 (215)
T ss_pred EccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-CcEEEEEEeecccHHHHHHHHH-HHhccccceeEEEEeh
Confidence 6999999999994 44555555544455555555555555 8899999999999999999955 9999999999999986
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
-
T Consensus 95 r 95 (215)
T KOG0097|consen 95 R 95 (215)
T ss_pred h
Confidence 3
No 96
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.78 E-value=3.6e-19 Score=99.40 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+...... .++.++....+. ...+.+++||++|++.++.+ +..++++++++++|||+++
T Consensus 20 vG~~~~GKTsL~~~l~~~~~~~~----~~t~g~~~~~~~-~~~~~l~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 20 LGLDNAGKTTILKKLLGEDIDTI----SPTLGFQIKTLE-YEGYKLNIWDVGGQKTLRPY-WRNYFESTDALIWVVDSSD 93 (173)
T ss_pred ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhCCCCEEEEEEECCC
Confidence 69999999999977766543332 233333332222 23588999999999999888 6689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 94 ~ 94 (173)
T cd04154 94 R 94 (173)
T ss_pred H
Confidence 3
No 97
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.78 E-value=6.4e-19 Score=96.95 Aligned_cols=76 Identities=20% Similarity=0.305 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.++..........+.+.+||++|++.+..+ +..+++.++++|+|+|+++
T Consensus 5 ~G~~~~GKTsl~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 5 LGLDSAGKSTLLYKLKHAELVTT----IPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV-WKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred EcCCCCCHHHHHHHHhcCCcccc----cCccCcceEEEEeCCceEEEEEECCCCHhHHHH-HHHHhccCCEEEEEEECCc
Confidence 69999999999977755433322 233333333333345688999999999999888 6689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 80 ~ 80 (160)
T cd04156 80 E 80 (160)
T ss_pred H
Confidence 3
No 98
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.78 E-value=9.4e-19 Score=96.39 Aligned_cols=79 Identities=18% Similarity=0.271 Sum_probs=56.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+............ ++..+++++||++|++.+..+ +..+++.+|++++|||++
T Consensus 6 ~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~ilv~d~~ 83 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQERFRSI-TSSYYRGAVGALLVYDIT 83 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHH-HHHHhCCCCEEEEEEECC
Confidence 699999999999766544 33333233332222222222 356688999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (164)
T smart00175 84 NR 85 (164)
T ss_pred CH
Confidence 64
No 99
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.78 E-value=1.4e-18 Score=96.73 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++++|||||++.+ .+.+.+.+.++.... +......++..+.+++||++|++.|..+ +..+++.++++++|||++
T Consensus 6 ~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~ilv~~~~ 82 (174)
T cd04135 6 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDH--YAVSVTVGGKQYLLGLYDTAGQEDYDRL-RPLSYPMTDVFLICFSVV 82 (174)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeee--eEEEEEECCEEEEEEEEeCCCccccccc-ccccCCCCCEEEEEEECC
Confidence 699999999998555 454544444333322 1222223467788999999999999998 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (174)
T cd04135 83 NP 84 (174)
T ss_pred CH
Confidence 64
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.78 E-value=1.8e-18 Score=95.21 Aligned_cols=79 Identities=18% Similarity=0.303 Sum_probs=56.9
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+... ....+....+........ +...+++++||++|++.+..+ +..+++.+|++++|||++
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 6 IGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTV-DGKKVKLAIWDTAGQERFRTL-TSSYYRGAQGVILVYDVT 83 (161)
T ss_pred ECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEECCCchhhhhh-hHHHhCCCCEEEEEEECC
Confidence 69999999999976655433 223333333322222223 366789999999999999888 558999999999999988
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (161)
T cd01863 84 RR 85 (161)
T ss_pred CH
Confidence 63
No 101
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.78 E-value=1.3e-18 Score=96.40 Aligned_cols=78 Identities=13% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc-cccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF-QDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|+++||||||+ +++.+.+...+.++.. ....... ..+++.+++++||++|++.+ ... ...+++.+|++|+|||+
T Consensus 5 vG~~~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~-~~~~~~~~~~i~D~~g~~~~~~~~-~~~~~~~~d~~i~v~d~ 81 (165)
T cd04146 5 LGASGVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQV-TIDGEQVSLEILDTAGQQQADTEQ-LERSIRWADGFVLVYSI 81 (165)
T ss_pred ECCCCCcHHHHHHHHHhCccccccCCChH-HhceEEE-EECCEEEEEEEEECCCCcccccch-HHHHHHhCCEEEEEEEC
Confidence 699999999998 4554444433333322 2222222 23477889999999999964 334 44899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 82 ~~~ 84 (165)
T cd04146 82 TDR 84 (165)
T ss_pred CCH
Confidence 863
No 102
>KOG0393|consensus
Probab=99.77 E-value=2.4e-19 Score=101.73 Aligned_cols=78 Identities=15% Similarity=0.277 Sum_probs=62.7
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeec-CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIA-NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
||+.+||||+|+ .+-.+.|+..+.++.. +. +...... +++.+.+.+|||+||+.|.++++ ..|+++|.+++||++
T Consensus 10 VGDga~GKT~ll~~~t~~~fp~~yvPTVF-dn-ys~~v~V~dg~~v~L~LwDTAGqedYDrlRp-lsY~~tdvfl~cfsv 86 (198)
T KOG0393|consen 10 VGDGAVGKTCLLISYTTNAFPEEYVPTVF-DN-YSANVTVDDGKPVELGLWDTAGQEDYDRLRP-LSYPQTDVFLLCFSV 86 (198)
T ss_pred ECCCCcCceEEEEEeccCcCcccccCeEE-cc-ceEEEEecCCCEEEEeeeecCCCcccccccc-cCCCCCCEEEEEEEc
Confidence 699999999997 6666777777766555 32 3333333 48999999999999999999865 899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
.++
T Consensus 87 ~~p 89 (198)
T KOG0393|consen 87 VSP 89 (198)
T ss_pred CCh
Confidence 875
No 103
>PLN03108 Rab family protein; Provisional
Probab=99.77 E-value=1.7e-18 Score=99.55 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=58.4
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.. .+.+...++...+.......+ ++..+.+++||++|++.+..+ +..+++.+|++|+|||++
T Consensus 12 vG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~~~~~-~~~~~~~ad~~vlv~D~~ 89 (210)
T PLN03108 12 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DNKPIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDIT 89 (210)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-HHHHhccCCEEEEEEECC
Confidence 69999999999966644 455544433333332333333 366789999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 90 ~~ 91 (210)
T PLN03108 90 RR 91 (210)
T ss_pred cH
Confidence 63
No 104
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.77 E-value=8.3e-19 Score=97.08 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|++|||||||++.+.+.+.+. ......++.......+. .....+.+||++|++.+..+ +..+++.++++++|+|
T Consensus 5 vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~v~vvd 82 (167)
T cd04160 5 LGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE-VGNARLKFWDLGGQESLRSL-WDKYYAECHAIIYVID 82 (167)
T ss_pred EecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE-ECCEEEEEEECCCChhhHHH-HHHHhCCCCEEEEEEE
Confidence 6999999999997776554321 11122334333333333 34688999999999999988 5689999999999999
Q ss_pred ccC
Q psy9524 78 TSM 80 (81)
Q Consensus 78 ~~~ 80 (81)
+++
T Consensus 83 ~~~ 85 (167)
T cd04160 83 STD 85 (167)
T ss_pred Cch
Confidence 875
No 105
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=3.4e-18 Score=94.77 Aligned_cols=77 Identities=13% Similarity=0.214 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+... ....++.... ....... .+..+.+++||++|++.+... +..+++.++++++|||++
T Consensus 6 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 82 (171)
T cd00157 6 VGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTV-DGKQVNLGLWDTAGQEEYDRL-RPLSYPNTDVFLICFSVD 82 (171)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEE-CCEEEEEEEEeCCCccccccc-chhhcCCCCEEEEEEECC
Confidence 69999999999976654433 3332222222 1222222 377889999999999998887 448889999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 83 ~ 83 (171)
T cd00157 83 S 83 (171)
T ss_pred C
Confidence 6
No 106
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.77 E-value=2.7e-18 Score=97.97 Aligned_cols=78 Identities=15% Similarity=0.237 Sum_probs=51.7
Q ss_pred CCCCCCcHhHHH-HHHhccC------CCCceeeecceeeeEEE--------eecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKM------SPNETLFLEGTNKMTKE--------DIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~------~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|+++||||||+ +++.+.. .+.+.++......+... ...+++.+++++|||+|++.. +++ .+
T Consensus 8 vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--~~~-~~ 84 (195)
T cd01873 8 VGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--DRR-FA 84 (195)
T ss_pred ECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh--hhc-cc
Confidence 699999999998 5664432 22222222110011111 123477899999999999863 433 79
Q ss_pred hccCCEEEEEEEccCC
Q psy9524 66 FARCGALIFVIDTSMG 81 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~~ 81 (81)
+++++++|+|||++++
T Consensus 85 ~~~ad~iilv~d~t~~ 100 (195)
T cd01873 85 YGRSDVVLLCFSIASP 100 (195)
T ss_pred CCCCCEEEEEEECCCh
Confidence 9999999999999874
No 107
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.77 E-value=3.3e-18 Score=98.49 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=59.4
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||+ +++.+.+.+.+.++......... ...++..+.+++||++|++++..+ +..++++++++++|||++
T Consensus 15 iG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~i~~~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 92 (215)
T PTZ00132 15 VGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLK-FYTNCGPICFNVWDTAGQEKFGGL-RDGYYIKGQCAIIMFDVT 92 (215)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEE-EEECCeEEEEEEEECCCchhhhhh-hHHHhccCCEEEEEEECc
Confidence 699999999999 56766666655444443332222 222467899999999999999888 458999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 93 ~ 93 (215)
T PTZ00132 93 S 93 (215)
T ss_pred C
Confidence 5
No 108
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=1.3e-18 Score=95.85 Aligned_cols=74 Identities=24% Similarity=0.402 Sum_probs=55.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+........ .++.+.....+. ...+++++||++|++.++.+ +..+++.++++|+|+|+++
T Consensus 5 vG~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~ii~v~d~~~ 78 (158)
T cd04151 5 LGLDNAGKTTILYRLQLGEVVTT----IPTIGFNVETVT-YKNLKFQVWDLGGQTSIRPY-WRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred ECCCCCCHHHHHHHHccCCCcCc----CCccCcCeEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhcCCCEEEEEEECCC
Confidence 69999999999977743322222 233333333333 45688999999999999988 6689999999999999986
No 109
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.77 E-value=1.3e-18 Score=91.86 Aligned_cols=79 Identities=24% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC---CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|++|||||||++.+.+.... ........+......... .....+++||++|++.+... +..++..+|++++|||
T Consensus 5 ~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~g~~~~~~~-~~~~~~~~d~~ilv~D 82 (119)
T PF08477_consen 5 LGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-GDRQSLQFWDFGGQEEFYSQ-HQFFLKKADAVILVYD 82 (119)
T ss_dssp ECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-TEEEEEEEEEESSSHCHHCT-SHHHHHHSCEEEEEEE
T ss_pred ECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-CCceEEEEEecCccceeccc-ccchhhcCcEEEEEEc
Confidence 699999999999877665544 122222333333333333 55556999999999988887 4477999999999999
Q ss_pred ccCC
Q psy9524 78 TSMG 81 (81)
Q Consensus 78 ~~~~ 81 (81)
++++
T Consensus 83 ~s~~ 86 (119)
T PF08477_consen 83 LSDP 86 (119)
T ss_dssp CCGH
T ss_pred CCCh
Confidence 9873
No 110
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=3.2e-18 Score=93.97 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.+................. .+..+.+.+||++|++.+..+ +..++++++++++|||++
T Consensus 6 ~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 83 (162)
T cd04123 6 LGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNI-GGKRIDLAIWDTAGQERYHAL-GPIYYRDADGAILVYDIT 83 (162)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEE-CCEEEEEEEEECCchHHHHHh-hHHHhccCCEEEEEEECC
Confidence 699999999999666444 43333333323322222222 356678999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 84 ~~ 85 (162)
T cd04123 84 DA 85 (162)
T ss_pred CH
Confidence 63
No 111
>KOG0071|consensus
Probab=99.76 E-value=8e-19 Score=94.79 Aligned_cols=74 Identities=23% Similarity=0.381 Sum_probs=64.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..++||||++..|. .+....+.||.+++.+.+. .+++++++||.+||++.+.+ |+.||..+.++|||+|..+
T Consensus 23 lGLd~aGKTtiLyKLk----l~~~~~~ipTvGFnvetVt-ykN~kfNvwdvGGqd~iRpl-WrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 23 LGLDAAGKTTILYKLK----LGQSVTTIPTVGFNVETVT-YKNVKFNVWDVGGQDKIRPL-WRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred EecccCCceehhhHHh----cCCCcccccccceeEEEEE-eeeeEEeeeeccCchhhhHH-HHhhccCCceEEEEEeccc
Confidence 5899999999996553 3345556788899999988 89999999999999999999 8899999999999999876
No 112
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.76 E-value=3.6e-18 Score=97.37 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=55.4
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+......+.. ........+ .+..+++++||++|++.|..+ +..+++.+|++|+|||++
T Consensus 5 vG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~-~~~~~~~ad~vilv~d~~ 81 (198)
T cd04147 5 MGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEV-GGVSLTLDILDTSGSYSFPAM-RKLSIQNSDAFALVYAVD 81 (198)
T ss_pred ECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEE-CCEEEEEEEEECCCchhhhHH-HHHHhhcCCEEEEEEECC
Confidence 699999999999555 4444433322222 111222222 356688999999999999988 558999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 82 ~~ 83 (198)
T cd04147 82 DP 83 (198)
T ss_pred CH
Confidence 63
No 113
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.76 E-value=3e-18 Score=95.92 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=55.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+........ .++.+....... ...+++.+||++|++.+... +..++++++++++|+|+++
T Consensus 21 ~G~~~~GKTsl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 21 VGLDNAGKTTILYQFLLGEVVHT----SPTIGSNVEEIV-YKNIRFLMWDIGGQESLRSS-WNTYYTNTDAVILVIDSTD 94 (174)
T ss_pred ECCCCCCHHHHHHHHccCCCCCc----CCccccceEEEE-ECCeEEEEEECCCCHHHHHH-HHHHhhcCCEEEEEEECCC
Confidence 69999999999976644322222 233332333333 34688999999999999888 6689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 95 ~ 95 (174)
T cd04153 95 R 95 (174)
T ss_pred H
Confidence 3
No 114
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.76 E-value=3.6e-18 Score=98.19 Aligned_cols=78 Identities=19% Similarity=0.344 Sum_probs=57.7
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... .+.++. ...............+++.+||++|+++|+.+ +..|+++++++++|||.+
T Consensus 11 ~G~~g~GKTtl~~~l~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~-~~~y~~~~~~~l~~~d~~ 88 (219)
T COG1100 11 LGDGGVGKTTLLNRLVGDEFPEGYPPTI-GNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSL-RPEYYRGANGILIVYDST 88 (219)
T ss_pred EcCCCccHHHHHHHHhcCcCcccCCCce-eeeeEEEEEEeCCCEEEEEeecCCCHHHHHHH-HHHHhcCCCEEEEEEecc
Confidence 699999999999666554444 333332 22223333343344889999999999999999 669999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 89 ~ 89 (219)
T COG1100 89 L 89 (219)
T ss_pred c
Confidence 5
No 115
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.76 E-value=2.8e-18 Score=99.97 Aligned_cols=80 Identities=50% Similarity=0.816 Sum_probs=60.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc----chhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF----DAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~----~~~~~~~~~~~~i~v~ 76 (81)
+|++++||||+.+.+.+++.|.++...++|.......+.....+.+++||+|||..+... .+...++++.++|+|+
T Consensus 5 mG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIyV~ 84 (232)
T PF04670_consen 5 MGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIYVF 84 (232)
T ss_dssp EESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEEEE
T ss_pred EcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEEEEEE
Confidence 699999999999999999999999999999888888876567789999999999866443 3557899999999999
Q ss_pred EccC
Q psy9524 77 DTSM 80 (81)
Q Consensus 77 D~~~ 80 (81)
|+.+
T Consensus 85 D~qs 88 (232)
T PF04670_consen 85 DAQS 88 (232)
T ss_dssp ETT-
T ss_pred Eccc
Confidence 9983
No 116
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.75 E-value=7.1e-18 Score=93.50 Aligned_cols=78 Identities=21% Similarity=0.370 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+.+.+.++...........+ .+..+.+.+||++|++.+... +..+++.++++++|||++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~ 90 (169)
T cd04114 13 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-KGEKIKLQIWDTAGQERFRSI-TQSYYRSANALILTYDIT 90 (169)
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-HHHHhcCCCEEEEEEECc
Confidence 6999999999997665 3444333333222222222223 366788999999999999888 458999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 91 ~ 91 (169)
T cd04114 91 C 91 (169)
T ss_pred C
Confidence 6
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.75 E-value=5.9e-18 Score=93.97 Aligned_cols=77 Identities=10% Similarity=0.056 Sum_probs=54.0
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+ .+++... .+..... .......++..+++.+||++|++.++.. +..+++.++++++|||++
T Consensus 6 vG~~~vGKTsl~~~l~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~ad~~ilv~d~~ 81 (166)
T cd01893 6 IGDEGVGKSSLIMSLVSEEFPEN-VPRVLPE--ITIPADVTPERVPTTIVDTSSRPQDRAN-LAAEIRKANVICLVYSVD 81 (166)
T ss_pred ECCCCCCHHHHHHHHHhCcCCcc-CCCcccc--eEeeeeecCCeEEEEEEeCCCchhhhHH-HhhhcccCCEEEEEEECC
Confidence 699999999999655 4444333 2222221 1222122367789999999999988776 447889999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 82 ~~ 83 (166)
T cd01893 82 RP 83 (166)
T ss_pred CH
Confidence 74
No 118
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=3.2e-18 Score=96.67 Aligned_cols=75 Identities=17% Similarity=0.351 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++......... ...+++.+||++|++.++.+ +..++++++++++|+|+++
T Consensus 23 vG~~~~GKTsli~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~-~~~~~~~ad~ii~vvD~~~ 96 (184)
T smart00178 23 LGLDNAGKTTLLHMLKNDRLAQH----QPTQHPTSEELA-IGNIKFTTFDLGGHQQARRL-WKDYFPEVNGIVYLVDAYD 96 (184)
T ss_pred ECCCCCCHHHHHHHHhcCCCccc----CCccccceEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhCCCCEEEEEEECCc
Confidence 69999999999977765433222 222222222232 34588999999999999888 6699999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 97 ~ 97 (184)
T smart00178 97 K 97 (184)
T ss_pred H
Confidence 4
No 119
>KOG0074|consensus
Probab=99.75 E-value=1.8e-18 Score=93.64 Aligned_cols=76 Identities=24% Similarity=0.446 Sum_probs=62.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..++|||++++.|... ...-..+|.+++...+.....+++.+||.+||+..+.. |.+||.+.|++|+|+|.+|
T Consensus 23 lGldnAGKTT~LKqL~sE----D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpy-WsNYyenvd~lIyVIDS~D 97 (185)
T KOG0074|consen 23 LGLDNAGKTTFLKQLKSE----DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPY-WSNYYENVDGLIYVIDSTD 97 (185)
T ss_pred EecCCCcchhHHHHHccC----ChhhccccCCcceEEEeecCcEEEEEEecCCccccchh-hhhhhhccceEEEEEeCCc
Confidence 588999999999766443 33444567777777666567799999999999999999 8899999999999999876
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 98 ~ 98 (185)
T KOG0074|consen 98 E 98 (185)
T ss_pred h
Confidence 4
No 120
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.75 E-value=9.1e-18 Score=95.94 Aligned_cols=80 Identities=15% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-------hhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-------AELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~~~~~~~~~ 72 (81)
+|+++||||||++.+ .+++...+.++.......... ..+++.+.+++|||+|.+.+.... ...+++.+|++
T Consensus 6 vG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i-~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i 84 (198)
T cd04142 6 LGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAV-VLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF 84 (198)
T ss_pred ECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEE-EECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence 699999999999554 455544443333322222222 234777899999999987653221 11457899999
Q ss_pred EEEEEccCC
Q psy9524 73 IFVIDTSMG 81 (81)
Q Consensus 73 i~v~D~~~~ 81 (81)
|+|||++++
T Consensus 85 ilv~D~~~~ 93 (198)
T cd04142 85 ILVYDICSP 93 (198)
T ss_pred EEEEECCCH
Confidence 999999874
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.75 E-value=3.9e-18 Score=93.72 Aligned_cols=75 Identities=23% Similarity=0.338 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|.+|||||||++.+.+...... .++.+.....+. ...+.+.+||++|++.+..+ +..+++.++++++|||+++
T Consensus 5 iG~~~~GKssli~~~~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~-~~~~~~~~~~~i~v~D~~~ 78 (158)
T cd00878 5 LGLDGAGKTTILYKLKLGEVVTT----IPTIGFNVETVE-YKNVSFTVWDVGGQDKIRPL-WKHYYENTNGIIFVVDSSD 78 (158)
T ss_pred EcCCCCCHHHHHHHHhcCCCCCC----CCCcCcceEEEE-ECCEEEEEEECCCChhhHHH-HHHHhccCCEEEEEEECCC
Confidence 69999999999977765543322 233333333333 34678999999999999888 6689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 79 ~ 79 (158)
T cd00878 79 R 79 (158)
T ss_pred H
Confidence 3
No 122
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.75 E-value=1.2e-17 Score=92.45 Aligned_cols=72 Identities=22% Similarity=0.235 Sum_probs=51.3
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||+ +++.+.+.+...+ .... +......+++.+.+++||++|++. . .+++.+|++++|||++
T Consensus 6 vG~~gvGKTsli~~~~~~~f~~~~~~-~~~~--~~~~i~~~~~~~~l~i~D~~g~~~-----~-~~~~~~~~~ilv~d~~ 76 (158)
T cd04103 6 VGNLQSGKSALVHRYLTGSYVQLESP-EGGR--FKKEVLVDGQSHLLLIRDEGGAPD-----A-QFASWVDAVIFVFSLE 76 (158)
T ss_pred ECCCCCcHHHHHHHHHhCCCCCCCCC-Cccc--eEEEEEECCEEEEEEEEECCCCCc-----h-hHHhcCCEEEEEEECC
Confidence 699999999998 4566655554322 2222 222223346778999999999974 2 5788899999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|+
T Consensus 77 ~~ 78 (158)
T cd04103 77 NE 78 (158)
T ss_pred CH
Confidence 74
No 123
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.74 E-value=9.8e-18 Score=91.31 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=56.6
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+.. .+.+..+...+........ +...+.+.+||++|++.+... +..+++++|++++|+|++
T Consensus 6 ~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~ 83 (159)
T cd00154 6 IGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEI-DGKTVKLQIWDTAGQERFRSI-TPSYYRGAHGAILVYDIT 83 (159)
T ss_pred ECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEE-CCEEEEEEEEecCChHHHHHH-HHHHhcCCCEEEEEEECC
Confidence 6999999999997665443 3333333333322222222 256688999999999999888 569999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (159)
T cd00154 84 N 84 (159)
T ss_pred C
Confidence 6
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.74 E-value=5.7e-18 Score=92.34 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=55.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+....... .++.+....... ...+.+.+||++|++.++.+ +..+++.++++++|+|+++
T Consensus 5 ~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 5 VGLQNSGKTTLVNVIAGGQFSEDT---IPTVGFNMRKVT-KGNVTLKVWDLGGQPRFRSM-WERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred EcCCCCCHHHHHHHHccCCCCcCc---cCCCCcceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHHhcCCEEEEEEECCC
Confidence 699999999999888655332221 223233322233 23488999999999999988 6699999999999999876
No 125
>KOG0075|consensus
Probab=99.74 E-value=9.8e-19 Score=95.05 Aligned_cols=76 Identities=24% Similarity=0.362 Sum_probs=63.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..++|||||++.+ +.........|+.+++...+. ...+.+.+||.+||.+|+.+ |..|++.++++++|+|++|
T Consensus 26 vGLq~sGKtt~Vn~i---a~g~~~edmiptvGfnmrk~t-kgnvtiklwD~gGq~rfrsm-WerycR~v~aivY~VDaad 100 (186)
T KOG0075|consen 26 VGLQNSGKTTLVNVI---ARGQYLEDMIPTVGFNMRKVT-KGNVTIKLWDLGGQPRFRSM-WERYCRGVSAIVYVVDAAD 100 (186)
T ss_pred EeeccCCcceEEEEE---eeccchhhhcccccceeEEec-cCceEEEEEecCCCccHHHH-HHHHhhcCcEEEEEeecCC
Confidence 588999999998533 222344455778888988887 77899999999999999999 9999999999999999988
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
|
T Consensus 101 ~ 101 (186)
T KOG0075|consen 101 P 101 (186)
T ss_pred c
Confidence 5
No 126
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.74 E-value=1.6e-17 Score=91.43 Aligned_cols=78 Identities=13% Similarity=0.184 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.+......... +......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 6 ~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 82 (164)
T cd04139 6 VGAGGVGKSALTLQFMYDEFVEDYEPTKADS--YRKKVVLDGEDVQLNILDTAGQEDYAAI-RDNYHRSGEGFLLVFSIT 82 (164)
T ss_pred ECCCCCCHHHHHHHHHhCCCccccCCcchhh--EEEEEEECCEEEEEEEEECCChhhhhHH-HHHHhhcCCEEEEEEECC
Confidence 699999999999666443 333333222222 2233334467889999999999999998 558999999999999987
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 83 ~~ 84 (164)
T cd04139 83 DM 84 (164)
T ss_pred CH
Confidence 63
No 127
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.72 E-value=2.2e-17 Score=90.44 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=55.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....+... .. .......++..+.+++||++|++.+..+ +..+++.++++++|||++
T Consensus 5 ~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 5 LGAGGVGKSAITIQFVKGTFVEEYDPTIE-DS-YRKTIVVDGETYTLDILDTAGQEEFSAM-RDLYIRQGDGFILVYSIT 81 (160)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcCcCCChh-He-EEEEEEECCEEEEEEEEECCChHHHHHH-HHHHHhcCCEEEEEEECC
Confidence 699999999999766443 3333333322 22 2222222356788999999999998888 558999999999999987
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 82 ~~ 83 (160)
T cd00876 82 DR 83 (160)
T ss_pred CH
Confidence 63
No 128
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.72 E-value=1.6e-17 Score=91.43 Aligned_cols=77 Identities=16% Similarity=0.115 Sum_probs=51.0
Q ss_pred CCCCCCcHhHHHHHHhcc----CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK----MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~ 76 (81)
+|+++||||||++.+.+. +.......+.....+....+. ...++++|||||+++|..... .+++++|++++|+
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~DtpG~~~~~~~~~-~~~~~ad~ii~V~ 82 (164)
T cd04171 6 AGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP--SGKRLGFIDVPGHEKFIKNML-AGAGGIDLVLLVV 82 (164)
T ss_pred EecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec--CCcEEEEEECCChHHHHHHHH-hhhhcCCEEEEEE
Confidence 599999999999877643 211111111112222222221 256899999999998876524 7888999999999
Q ss_pred EccC
Q psy9524 77 DTSM 80 (81)
Q Consensus 77 D~~~ 80 (81)
|+++
T Consensus 83 d~~~ 86 (164)
T cd04171 83 AADE 86 (164)
T ss_pred ECCC
Confidence 9875
No 129
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.71 E-value=4.4e-17 Score=91.29 Aligned_cols=77 Identities=16% Similarity=0.152 Sum_probs=54.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++..... ...... .+..+.+++||++|++++..+ +..++..++++++|||++
T Consensus 7 ~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 83 (180)
T cd04137 7 LGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRY-KGQDYHLEIVDTAGQDEYSIL-PQKYSIGIHGYILVYSVT 83 (180)
T ss_pred ECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEE-CCEEEEEEEEECCChHhhHHH-HHHHHhhCCEEEEEEECC
Confidence 699999999999665443 3332322222211 122222 356688999999999999888 668999999999999988
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (180)
T cd04137 84 S 84 (180)
T ss_pred C
Confidence 6
No 130
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.71 E-value=2.9e-17 Score=92.78 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=54.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+.......++..+ ....+. .....+++||++|++.++.+ +..++++++++++|+|+++
T Consensus 25 lG~~~~GKStLi~~l~~~~~~~~~~T~~~----~~~~i~-~~~~~~~l~D~~G~~~~~~~-~~~~~~~ad~iilV~D~~~ 98 (190)
T cd00879 25 LGLDNAGKTTLLHMLKDDRLAQHVPTLHP----TSEELT-IGNIKFKTFDLGGHEQARRL-WKDYFPEVDGIVFLVDAAD 98 (190)
T ss_pred ECCCCCCHHHHHHHHhcCCCcccCCccCc----ceEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhccCCEEEEEEECCc
Confidence 69999999999987765443333222222 222222 23478999999999998887 6689999999999999986
No 131
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.71 E-value=5.4e-17 Score=93.09 Aligned_cols=77 Identities=19% Similarity=0.247 Sum_probs=53.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccC-CEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARC-GALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~-~~~i~v~D~ 78 (81)
+|+++||||||++.+... +....+.. .+....... ....+...+++||+||+++++.. +..+++.+ +++|+|+|+
T Consensus 6 ~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~-~~~~~~~~~~l~D~pG~~~~~~~-~~~~~~~~~~~vV~VvD~ 82 (203)
T cd04105 6 LGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFIL-NSEGKGKKFRLVDVPGHPKLRDK-LLETLKNSAKGIVFVVDS 82 (203)
T ss_pred EcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEe-ecCCCCceEEEEECCCCHHHHHH-HHHHHhccCCEEEEEEEC
Confidence 699999999999766554 33333222 222111111 11135678999999999999887 55889998 999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 83 ~~ 84 (203)
T cd04105 83 AT 84 (203)
T ss_pred cc
Confidence 75
No 132
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.71 E-value=7.6e-17 Score=93.45 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=51.4
Q ss_pred CCCCCCcHhHHHHHH-hccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhc-cCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFA-RCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~-~~~~~i~v~D 77 (81)
+|++|||||||++.+ .+.+. ....++...+.......+ ++..+.+.+||++|++. .+ ...+++ ++|++++|||
T Consensus 6 vG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~--~~-~~~~~~~~ad~iilV~d 81 (221)
T cd04148 6 LGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSV-DGEESTLVVIDHWEQEM--WT-EDSCMQYQGDAFVVVYS 81 (221)
T ss_pred ECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEE-CCEEEEEEEEeCCCcch--HH-HhHHhhcCCCEEEEEEE
Confidence 699999999999666 44443 222222211222222223 36778999999999982 23 335677 9999999999
Q ss_pred ccCC
Q psy9524 78 TSMG 81 (81)
Q Consensus 78 ~~~~ 81 (81)
++|+
T Consensus 82 ~td~ 85 (221)
T cd04148 82 VTDR 85 (221)
T ss_pred CCCH
Confidence 9874
No 133
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.70 E-value=2e-16 Score=89.49 Aligned_cols=77 Identities=18% Similarity=0.319 Sum_probs=55.3
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+.+...++.... ....... ++..+.+.+||++|++.+....+ .+++.++++++|||++
T Consensus 7 vG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~-~~~~~a~~~llv~~i~ 83 (187)
T cd04129 7 VGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-YVTDCRV-DGKPVQLALWDTAGQEEYERLRP-LSYSKAHVILIGFAVD 83 (187)
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcccce-EEEEEEE-CCEEEEEEEEECCCChhccccch-hhcCCCCEEEEEEECC
Confidence 6999999999997774 55544333322222 1222222 36678899999999999988744 7889999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 84 ~ 84 (187)
T cd04129 84 T 84 (187)
T ss_pred C
Confidence 6
No 134
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.68 E-value=9.5e-17 Score=91.22 Aligned_cols=78 Identities=18% Similarity=0.253 Sum_probs=54.0
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCCce------------eeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPNET------------LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|.++||||||++.+.+ .+..... .....+.......+. .+.+++++|||+|+++|... +..+
T Consensus 8 vG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~-~~~~ 85 (194)
T cd01891 8 IAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVT-YKDTKINIVDTPGHADFGGE-VERV 85 (194)
T ss_pred EecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEE-ECCEEEEEEECCCcHHHHHH-HHHH
Confidence 69999999999966643 3333211 011112222222233 56788999999999999888 5589
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++++|++++|||+++
T Consensus 86 ~~~~d~~ilV~d~~~ 100 (194)
T cd01891 86 LSMVDGVLLLVDASE 100 (194)
T ss_pred HHhcCEEEEEEECCC
Confidence 999999999999876
No 135
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.68 E-value=1.7e-16 Score=88.34 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=54.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.++....+. .....+.+||++|++.+... +..+++.++++++|+|+++
T Consensus 20 ~G~~g~GKStLl~~l~~~~~~~~----~~t~g~~~~~i~-~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~ii~v~D~~~ 93 (173)
T cd04155 20 LGLDNAGKTTILKQLASEDISHI----TPTQGFNIKTVQ-SDGFKLNVWDIGGQRAIRPY-WRNYFENTDCLIYVIDSAD 93 (173)
T ss_pred EccCCCCHHHHHHHHhcCCCccc----CCCCCcceEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhcCCCEEEEEEeCCC
Confidence 69999999999988866533222 233333333333 23578999999999988887 5588999999999999875
No 136
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.67 E-value=1.3e-16 Score=89.15 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=35.5
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+++++|||||++++..+ +..+++.+|++|+|||+++
T Consensus 63 ~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~~i~v~D~~~ 102 (179)
T cd01890 63 DGQEYLLNLIDTPGHVDFSYE-VSRSLAACEGALLLVDATQ 102 (179)
T ss_pred CCCcEEEEEEECCCChhhHHH-HHHHHHhcCeEEEEEECCC
Confidence 367788999999999999888 4589999999999999976
No 137
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.66 E-value=3.7e-16 Score=86.40 Aligned_cols=77 Identities=17% Similarity=0.186 Sum_probs=52.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecC--CceeEEEEEecCCCccccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIAN--SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|+++||||||++.+... +....... .+.......... .....+.+|||+|++.|..+ +..+++.+|++++|+|
T Consensus 6 iG~~~~GKtsli~~l~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~-~~~~~~~~d~il~v~d 82 (168)
T cd01887 6 MGHVDHGKTTLLDKIRKTNVAAGEAGG--ITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNM-RARGASLTDIAILVVA 82 (168)
T ss_pred EecCCCCHHHHHHHHHhcccccccCCC--eEEeeccEEEecccCCcceEEEEeCCCcHHHHHH-HHHHHhhcCEEEEEEE
Confidence 699999999999776443 22221111 121122122221 24678999999999999888 5578999999999999
Q ss_pred ccC
Q psy9524 78 TSM 80 (81)
Q Consensus 78 ~~~ 80 (81)
+++
T Consensus 83 ~~~ 85 (168)
T cd01887 83 ADD 85 (168)
T ss_pred CCC
Confidence 976
No 138
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.63 E-value=2.2e-15 Score=80.80 Aligned_cols=79 Identities=22% Similarity=0.310 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|+|||||++.+.+... +.....+........... ......+.+||++|+..+... +..+++.++++++|+|++
T Consensus 2 iG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 2 VGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEV-DGKKVKLQIWDTAGQERFRSL-RRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEE-CCEEEEEEEEecCChHHHHhH-HHHHhcCCCEEEEEEECc
Confidence 69999999999988766554 232222222222222222 245788999999999988777 458999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 80 ~~ 81 (157)
T cd00882 80 DR 81 (157)
T ss_pred CH
Confidence 63
No 139
>KOG0395|consensus
Probab=99.63 E-value=5.2e-16 Score=88.70 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=65.6
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|.+|||||+|+ +++.+.|...+.++++.+ +.+....++..+.+.|+||+|++.|..+ +..|++.++++++||+++
T Consensus 9 lG~~gVGKSal~~qf~~~~f~~~y~ptied~--y~k~~~v~~~~~~l~ilDt~g~~~~~~~-~~~~~~~~~gF~lVysit 85 (196)
T KOG0395|consen 9 LGAGGVGKSALTIQFLTGRFVEDYDPTIEDS--YRKELTVDGEVCMLEILDTAGQEEFSAM-RDLYIRNGDGFLLVYSIT 85 (196)
T ss_pred ECCCCCCcchheeeecccccccccCCCcccc--ceEEEEECCEEEEEEEEcCCCcccChHH-HHHhhccCcEEEEEEECC
Confidence 699999999995 888888888877777644 3444444589999999999999999999 669999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
|.
T Consensus 86 d~ 87 (196)
T KOG0395|consen 86 DR 87 (196)
T ss_pred CH
Confidence 73
No 140
>KOG0076|consensus
Probab=99.62 E-value=2.3e-16 Score=87.68 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=64.3
Q ss_pred CCCCCCcHhHHHHHHhccCC----CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS----PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~ 76 (81)
+|+.++|||+++..+...+. .-....+.++.+.+...+. -....+.+||.+||+..+.+ |..||..++++|+++
T Consensus 23 lgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~-v~~~~l~fwdlgGQe~lrSl-w~~yY~~~H~ii~vi 100 (197)
T KOG0076|consen 23 LGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIE-VCNAPLSFWDLGGQESLRSL-WKKYYWLAHGIIYVI 100 (197)
T ss_pred eccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeeccee-eccceeEEEEcCChHHHHHH-HHHHHHHhceeEEee
Confidence 58999999999866644333 2344566778888887776 33677999999999999999 989999999999999
Q ss_pred EccCC
Q psy9524 77 DTSMG 81 (81)
Q Consensus 77 D~~~~ 81 (81)
|++|+
T Consensus 101 Da~~~ 105 (197)
T KOG0076|consen 101 DATDR 105 (197)
T ss_pred cCCCH
Confidence 99873
No 141
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.62 E-value=3.6e-15 Score=81.66 Aligned_cols=77 Identities=14% Similarity=0.155 Sum_probs=49.4
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc-----chhhhhc--cCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF-----DAELIFA--RCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----~~~~~~~--~~~~~ 72 (81)
+|.+|||||||++.+.+.. ...+.+.+..........+ ....+.+|||||++.+... ....++. .++++
T Consensus 2 ~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 2 VGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKL---GGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEee---CCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 6999999999998886653 2222221111111112222 2357899999999877653 1235664 89999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|.++
T Consensus 79 i~v~d~~~ 86 (158)
T cd01879 79 VNVVDATN 86 (158)
T ss_pred EEEeeCCc
Confidence 99999875
No 142
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.60 E-value=5.6e-15 Score=81.86 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC-C--ceeeecceeeeEEEeecCCceeEEEEEecCCCc----cccccchhhhhc---cCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-N--ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----DFQDFDAELIFA---RCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----~~~~~~~~~~~~---~~~ 70 (81)
+|++|||||||++.+.+.... . ...+..+..+ ........++.+|||||+. ..+.+.. .+++ .+|
T Consensus 6 vG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~----~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~~~~~d 80 (170)
T cd01898 6 VGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLG----VVRVDDGRSFVVADIPGLIEGASEGKGLGH-RFLRHIERTR 80 (170)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCccccCCcce----EEEcCCCCeEEEEecCcccCcccccCCchH-HHHHHHHhCC
Confidence 699999999999888654221 0 1111222212 1221223589999999974 2223322 4444 599
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++++|+|++++
T Consensus 81 ~vi~v~D~~~~ 91 (170)
T cd01898 81 LLLHVIDLSGD 91 (170)
T ss_pred EEEEEEecCCC
Confidence 99999999863
No 143
>KOG0072|consensus
Probab=99.59 E-value=4.5e-16 Score=84.53 Aligned_cols=74 Identities=28% Similarity=0.486 Sum_probs=62.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..|+|||+++. .....+..++.|+++++.+.+. .++.++++||.+||-..+.. |+.||.+.+++|+|+|.+|
T Consensus 24 lgldGaGkttIly----rlqvgevvttkPtigfnve~v~-yKNLk~~vwdLggqtSirPy-WRcYy~dt~avIyVVDssd 97 (182)
T KOG0072|consen 24 LGLDGAGKTTILY----RLQVGEVVTTKPTIGFNVETVP-YKNLKFQVWDLGGQTSIRPY-WRCYYADTDAVIYVVDSSD 97 (182)
T ss_pred eeccCCCeeEEEE----EcccCcccccCCCCCcCccccc-cccccceeeEccCcccccHH-HHHHhcccceEEEEEeccc
Confidence 4677888888873 2333455666788888998888 79999999999999999999 8899999999999999987
No 144
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.59 E-value=6.9e-15 Score=80.31 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=48.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... .....+.+|||||...+.. . ...+++.+|++
T Consensus 3 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~-~~~~~~~~d~i 80 (157)
T cd01894 3 VGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAE-WGGREFILIDTGGIEPDDEGISKEIREQ-AELAIEEADVI 80 (157)
T ss_pred cCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEE-ECCeEEEEEECCCCCCchhHHHHHHHHH-HHHHHHhCCEE
Confidence 699999999999877654211100000111111111111 3346799999999987654 2 22567889999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|..+
T Consensus 81 i~v~d~~~ 88 (157)
T cd01894 81 LFVVDGRE 88 (157)
T ss_pred EEEEeccc
Confidence 99999864
No 145
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.58 E-value=1e-14 Score=81.09 Aligned_cols=76 Identities=21% Similarity=0.247 Sum_probs=47.9
Q ss_pred CCCCCCcHhHHHHHHhccCC--CC-ceeeecceeeeEEEeecCCceeEEEEEecCCCcc----ccccc--hhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----FQDFD--AELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~--~~~~~~~~~~ 71 (81)
+|++|||||||++.+.+... .. ...+..+... ........++.+||+||... .+.+. ...+++.+++
T Consensus 2 iG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 2 VGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLG----VVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCcHHHHHHHHhcCCccccCCCceeecCcce----EEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCE
Confidence 69999999999988866532 11 1222222211 12212257789999999732 22221 1145788999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|+++
T Consensus 78 ii~v~d~~~ 86 (176)
T cd01881 78 ILHVVDASE 86 (176)
T ss_pred EEEEEeccC
Confidence 999999876
No 146
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=1.4e-14 Score=78.51 Aligned_cols=77 Identities=16% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|.+|+|||||++.+.....+. ................ ++..+.+.+||++|++.+..+ +..+++.++.++.++|+.
T Consensus 7 ~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~~~d~~ 84 (161)
T TIGR00231 7 VGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYRAI-RRLYYRAVESSLRVFDIV 84 (161)
T ss_pred ECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccchHH-HHHHHhhhhEEEEEEEEe
Confidence 6999999999997775544332 2222222221111222 244588999999999999888 558899999999999875
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.56 E-value=1.7e-14 Score=90.68 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=49.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-------hhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-------AELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~~~~~~~~~i 73 (81)
+|++|||||||++.+.+............+.......+. .....+.+|||+|++.+.... ...+++++|+++
T Consensus 209 vG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~-~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il 287 (442)
T TIGR00450 209 VGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFE-LNGILIKLLDTAGIREHADFVERLGIEKSFKAIKQADLVI 287 (442)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEE-ECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCEEE
Confidence 699999999999887654221111111111112222222 234667999999997654321 126889999999
Q ss_pred EEEEccCC
Q psy9524 74 FVIDTSMG 81 (81)
Q Consensus 74 ~v~D~~~~ 81 (81)
+|||++++
T Consensus 288 ~V~D~s~~ 295 (442)
T TIGR00450 288 YVLDASQP 295 (442)
T ss_pred EEEECCCC
Confidence 99999863
No 148
>PRK15494 era GTPase Era; Provisional
Probab=99.56 E-value=8.4e-15 Score=89.54 Aligned_cols=78 Identities=18% Similarity=0.228 Sum_probs=48.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc-ccccc-------hhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD-FQDFD-------AELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~-------~~~~~~~~~~~ 72 (81)
+|++|||||||++.+.+.......+....|.......+. ....++.+|||||+.. +..+. + .+++++|++
T Consensus 58 vG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~-~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~-~~l~~aDvi 135 (339)
T PRK15494 58 IGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIIT-LKDTQVILYDTPGIFEPKGSLEKAMVRCAW-SSLHSADLV 135 (339)
T ss_pred EcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEE-eCCeEEEEEECCCcCCCcccHHHHHHHHHH-HHhhhCCEE
Confidence 699999999999777655332211222222222222222 3345789999999843 33221 2 357899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|.++
T Consensus 136 l~VvD~~~ 143 (339)
T PRK15494 136 LLIIDSLK 143 (339)
T ss_pred EEEEECCC
Confidence 99999764
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.54 E-value=4.1e-14 Score=77.14 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc--------chhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF--------DAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~~~~~~ 72 (81)
+|++|+|||||++.+.+............+......... .....+.+||++|...+... .+ .++..++++
T Consensus 7 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~~ 84 (157)
T cd04164 7 VGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESID-IGGIPVRLIDTAGIRETEDEIEKIGIERAR-EAIEEADLV 84 (157)
T ss_pred ECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEE-eCCEEEEEEECCCcCCCcchHHHHHHHHHH-HHHhhCCEE
Confidence 699999999999877654321111111111112222222 23567899999998765432 12 577899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+++
T Consensus 85 v~v~d~~~ 92 (157)
T cd04164 85 LFVIDASR 92 (157)
T ss_pred EEEEECCC
Confidence 99999985
No 150
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.54 E-value=9.8e-15 Score=79.09 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=43.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc-----cccccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM-----DFQDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-----~~~~~~~~~~~~~~~~~i~v 75 (81)
+|++|||||||++.+.+.... . .++.... +.-.+||++|+. .++.+ . ..++++|++++|
T Consensus 6 iG~~~vGKSsL~~~l~~~~~~-~----~~t~~~~---------~~~~~iDt~G~~~~~~~~~~~~-~-~~~~~ad~vilv 69 (142)
T TIGR02528 6 IGSVGCGKTTLTQALQGEEIL-Y----KKTQAVE---------YNDGAIDTPGEYVENRRLYSAL-I-VTAADADVIALV 69 (142)
T ss_pred ECCCCCCHHHHHHHHcCCccc-c----ccceeEE---------EcCeeecCchhhhhhHHHHHHH-H-HHhhcCCEEEEE
Confidence 699999999999777554321 1 1221111 111689999983 34444 3 358899999999
Q ss_pred EEccCC
Q psy9524 76 IDTSMG 81 (81)
Q Consensus 76 ~D~~~~ 81 (81)
||++++
T Consensus 70 ~d~~~~ 75 (142)
T TIGR02528 70 QSATDP 75 (142)
T ss_pred ecCCCC
Confidence 999874
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=2.1e-14 Score=90.94 Aligned_cols=78 Identities=17% Similarity=0.209 Sum_probs=48.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc--------ccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD--------FQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... .....+.+|||+|++. +... ...+++.+|++
T Consensus 44 vG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~~~~~-~~~~~~~aD~i 121 (472)
T PRK03003 44 VGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAE-WNGRRFTVVDTGGWEPDAKGLQASVAEQ-AEVAMRTADAV 121 (472)
T ss_pred EcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEE-ECCcEEEEEeCCCcCCcchhHHHHHHHH-HHHHHHhCCEE
Confidence 699999999999777654322111111112111111111 2334689999999863 2222 23678999999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|+|+++
T Consensus 122 l~VvD~~~ 129 (472)
T PRK03003 122 LFVVDATV 129 (472)
T ss_pred EEEEECCC
Confidence 99999986
No 152
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.53 E-value=1.7e-14 Score=88.51 Aligned_cols=77 Identities=18% Similarity=0.138 Sum_probs=47.7
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCc---------cccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM---------DFQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~~~~~~ 70 (81)
+|.+|||||||++.+.+.... .... ..|.......+.-.....+.+|||+|.. .|+.. . ..++++|
T Consensus 195 vG~~NvGKSSLln~L~~~~~~v~~~~--~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-l-e~~~~AD 270 (351)
T TIGR03156 195 VGYTNAGKSTLFNALTGADVYAADQL--FATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-L-EEVREAD 270 (351)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCC--ccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-H-HHHHhCC
Confidence 699999999999888665321 1111 1111111111221234578999999972 23332 3 4588999
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++++|+|++++
T Consensus 271 lil~VvD~s~~ 281 (351)
T TIGR03156 271 LLLHVVDASDP 281 (351)
T ss_pred EEEEEEECCCC
Confidence 99999999874
No 153
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.53 E-value=3e-14 Score=79.89 Aligned_cols=78 Identities=19% Similarity=0.125 Sum_probs=52.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCce-ee--------------ecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNET-LF--------------LEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~-~~--------------~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..|+|||||++.+.+....... .. ...+......... .....+.+||+||+..+... +..+
T Consensus 5 ~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~-~~~~ 82 (189)
T cd00881 5 AGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFE-WPDRRVNFIDTPGHEDFSSE-VIRG 82 (189)
T ss_pred EeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEe-eCCEEEEEEeCCCcHHHHHH-HHHH
Confidence 599999999999877554333211 10 0111111111222 34578999999999988887 5588
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++++|+|+++
T Consensus 83 ~~~~d~~i~v~d~~~ 97 (189)
T cd00881 83 LSVSDGAILVVDANE 97 (189)
T ss_pred HHhcCEEEEEEECCC
Confidence 999999999999875
No 154
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.53 E-value=8.7e-14 Score=75.37 Aligned_cols=81 Identities=17% Similarity=0.233 Sum_probs=52.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc------hhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD------AELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~------~~~~~~~~~~~i~ 74 (81)
+|..|+|||||++.+.+............+...............+.+||++|...+.... ...+++.+|++++
T Consensus 2 ~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~ 81 (163)
T cd00880 2 FGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILF 81 (163)
T ss_pred cCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEE
Confidence 6999999999998876653332111112222222222221236789999999988765431 1247889999999
Q ss_pred EEEccCC
Q psy9524 75 VIDTSMG 81 (81)
Q Consensus 75 v~D~~~~ 81 (81)
|+|.+++
T Consensus 82 v~~~~~~ 88 (163)
T cd00880 82 VVDADLR 88 (163)
T ss_pred EEeCCCC
Confidence 9998763
No 155
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.52 E-value=3.1e-14 Score=81.30 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=45.8
Q ss_pred CCCCCCcHhHHHHHHhccCC-CC--ceeeecceeeeEEEeecCCceeEEEEEecCCCcc---------ccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PN--ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD---------FQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~---------~~~~~~~~~~~~ 68 (81)
+|++|||||||++++.+... .. ...+..+. ...... .....+.+||++|... +... . ..+..
T Consensus 47 iG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~--~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~-~~~~~ 120 (204)
T cd01878 47 VGYTNAGKSTLFNALTGADVYAEDQLFATLDPT--TRRLRL--PDGREVLLTDTVGFIRDLPHQLVEAFRST-L-EEVAE 120 (204)
T ss_pred ECCCCCCHHHHHHHHhcchhccCCccceeccce--eEEEEe--cCCceEEEeCCCccccCCCHHHHHHHHHH-H-HHHhc
Confidence 69999999999987766532 11 11112221 111112 2234789999999732 1111 2 24678
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|++++|+|++++
T Consensus 121 ~d~ii~v~D~~~~ 133 (204)
T cd01878 121 ADLLLHVVDASDP 133 (204)
T ss_pred CCeEEEEEECCCC
Confidence 9999999999863
No 156
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.52 E-value=7.9e-14 Score=77.19 Aligned_cols=78 Identities=19% Similarity=0.269 Sum_probs=45.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc--------hhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD--------AELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~--------~~~~~~~~~~~ 72 (81)
+|++|||||||++.+.+....... ....+......... .+.+++++|||||+....... .......+|++
T Consensus 6 ~G~~~~GKssli~~l~~~~~~~~~-~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~~ 83 (168)
T cd01897 6 AGYPNVGKSSLVNKLTRAKPEVAP-YPFTTKSLFVGHFD-YKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAAV 83 (168)
T ss_pred EcCCCCCHHHHHHHHhcCCCccCC-CCCcccceeEEEEc-cCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCcE
Confidence 699999999999777655332111 11112222322222 356889999999984311100 00111236899
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+++
T Consensus 84 l~v~d~~~ 91 (168)
T cd01897 84 LFLFDPSE 91 (168)
T ss_pred EEEEeCCc
Confidence 99999975
No 157
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.52 E-value=7.9e-14 Score=90.15 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=52.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.++|||||++.+.+. +...+...+..+.+.....+. ....+.||||||++.|..+ +...++.+|++|+|+|++
T Consensus 93 ~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~--~~~~i~~iDTPGhe~F~~~-r~rga~~aDiaILVVda~ 169 (587)
T TIGR00487 93 MGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENE--DGKMITFLDTPGHEAFTSM-RARGAKVTDIVVLVVAAD 169 (587)
T ss_pred ECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEEC--CCcEEEEEECCCCcchhhH-HHhhhccCCEEEEEEECC
Confidence 699999999999776443 333222222223222222222 1227899999999999998 447899999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 170 d 170 (587)
T TIGR00487 170 D 170 (587)
T ss_pred C
Confidence 5
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=6.7e-14 Score=83.26 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=48.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-c----c--hhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-F----D--AELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~----~--~~~~~~~~~~~i 73 (81)
+|.+|||||||++.+.+............|......... ....++.+|||||...... + . ...+++++|+++
T Consensus 6 iG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl 84 (270)
T TIGR00436 6 LGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLIL 84 (270)
T ss_pred ECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEE
Confidence 699999999999888665322111111111111112222 3346789999999754321 1 0 125678999999
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
+|+|+++
T Consensus 85 ~VvD~~~ 91 (270)
T TIGR00436 85 FVVDSDQ 91 (270)
T ss_pred EEEECCC
Confidence 9999875
No 159
>KOG4252|consensus
Probab=99.51 E-value=6.6e-16 Score=86.65 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=58.4
Q ss_pred CCCCCCcHhHHHH-HHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|..+|||+|+++ ++.+.|...+..++..+..-....+ +.+.+.+++||++||+.|..+. +.||++|.+.++||..+
T Consensus 26 vGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v-~~Edvr~mlWdtagqeEfDaIt-kAyyrgaqa~vLVFSTT 103 (246)
T KOG4252|consen 26 VGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKV-LIEDVRSMLWDTAGQEEFDAIT-KAYYRGAQASVLVFSTT 103 (246)
T ss_pred ECCCccchHHHHHHHhccccccccccccchhhhhHHHHh-hHHHHHHHHHHhccchhHHHHH-HHHhccccceEEEEecc
Confidence 5899999999995 5555565555544444322222222 3677888999999999999994 59999999999999887
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
|
T Consensus 104 D 104 (246)
T KOG4252|consen 104 D 104 (246)
T ss_pred c
Confidence 6
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.50 E-value=7.6e-14 Score=87.99 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=49.5
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc--------chhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF--------DAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~~~~ 70 (81)
+|.+|||||||++.+.+... ....+. .+..+....+. .....+.+|||+|.+.+... .+ .+++.+|
T Consensus 221 vG~~nvGKSSLln~L~~~~~a~v~~~~g--tT~d~~~~~i~-~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~-~~~~~aD 296 (449)
T PRK05291 221 AGRPNVGKSSLLNALLGEERAIVTDIAG--TTRDVIEEHIN-LDGIPLRLIDTAGIRETDDEVEKIGIERSR-EAIEEAD 296 (449)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCC--cccccEEEEEE-ECCeEEEEEeCCCCCCCccHHHHHHHHHHH-HHHHhCC
Confidence 69999999999988865432 111111 11112222222 23467899999998765432 12 5788999
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++++|+|++++
T Consensus 297 ~il~VvD~s~~ 307 (449)
T PRK05291 297 LVLLVLDASEP 307 (449)
T ss_pred EEEEEecCCCC
Confidence 99999999864
No 161
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=4e-14 Score=89.65 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=46.4
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCc----------cccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----------DFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~~~~~ 68 (81)
+|.++||||||++.+.+... ......+..........+ ....+.+|||+|.+ .|..++...+++.
T Consensus 217 iG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~---~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ 293 (472)
T PRK03003 217 VGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIEL---GGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEA 293 (472)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEE---CCEEEEEEECCCccccccccchHHHHHHHHHHHHHhc
Confidence 69999999999977765432 111111111111111112 23456899999963 3333322246789
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|++|+|+|++++
T Consensus 294 ad~vilV~Da~~~ 306 (472)
T PRK03003 294 AEVAVVLIDASEP 306 (472)
T ss_pred CCEEEEEEeCCCC
Confidence 9999999998763
No 162
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=8.1e-14 Score=87.30 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=48.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc--------ccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD--------FQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... .....+.+|||||++. +... ...+++.+|++
T Consensus 7 vG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~~~~~-~~~~~~~ad~i 84 (435)
T PRK00093 7 VGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAE-WLGREFILIDTGGIEPDDDGFEKQIREQ-AELAIEEADVI 84 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEE-ECCcEEEEEECCCCCCcchhHHHHHHHH-HHHHHHhCCEE
Confidence 699999999999777554321111111111111111122 2237899999999987 2222 22578899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|+|.++
T Consensus 85 l~vvd~~~ 92 (435)
T PRK00093 85 LFVVDGRA 92 (435)
T ss_pred EEEEECCC
Confidence 99999875
No 163
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.47 E-value=1.3e-13 Score=80.83 Aligned_cols=78 Identities=19% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCCCCcHhHHHHHHhccCCC---------C--------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---------N--------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---------~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.+...... . .......+......... .+..++.+|||||+..|... ..
T Consensus 5 ~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~-~~~~~i~liDTPG~~~f~~~-~~ 82 (237)
T cd04168 5 LAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQ-WEDTKVNLIDTPGHMDFIAE-VE 82 (237)
T ss_pred EcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEE-ECCEEEEEEeCCCccchHHH-HH
Confidence 589999999999655322110 0 00111112222223333 56688999999999998887 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++++|+|+++
T Consensus 83 ~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 83 RSLSVLDGAILVISAVE 99 (237)
T ss_pred HHHHHhCeEEEEEeCCC
Confidence 89999999999999875
No 164
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.47 E-value=1.3e-13 Score=82.05 Aligned_cols=78 Identities=15% Similarity=0.146 Sum_probs=52.3
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCc-------------------eeeecceeeeEEEeecCCceeEEEEEecCCCccccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNE-------------------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~ 59 (81)
+|..++|||||++.|..... ... ......++......+. .+.+++++|||||+.+|..
T Consensus 8 vGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~-~~~~~i~liDTPG~~df~~ 86 (267)
T cd04169 8 ISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFE-YRDCVINLLDTPGHEDFSE 86 (267)
T ss_pred EcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEe-eCCEEEEEEECCCchHHHH
Confidence 69999999999966532110 000 0001112222233333 6678999999999998887
Q ss_pred cchhhhhccCCEEEEEEEccC
Q psy9524 60 FDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 60 ~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+ .+++.+|++|+|+|+++
T Consensus 87 ~~~-~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 87 DTY-RTLTAVDSAVMVIDAAK 106 (267)
T ss_pred HHH-HHHHHCCEEEEEEECCC
Confidence 645 78999999999999875
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.47 E-value=1.7e-13 Score=88.78 Aligned_cols=79 Identities=16% Similarity=0.214 Sum_probs=52.6
Q ss_pred CCCCCCcHhHHHHHHhccC--------CCCce------eeecceeeeEEEe--ec--CCceeEEEEEecCCCccccccch
Q psy9524 1 MGLRRSGKTSIQKVVFQKM--------SPNET------LFLEGTNKMTKED--IA--NSSFLQYQLWDCPGQMDFQDFDA 62 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~--------~~~~~------~~~~~~~~~~~~~--~~--~~~~~~l~~~D~~G~~~~~~~~~ 62 (81)
+|+.++|||||++.+.... ..... .....++...... +. +++.++++||||||+++|... +
T Consensus 9 IGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~~~-v 87 (595)
T TIGR01393 9 IAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFSYE-V 87 (595)
T ss_pred ECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHHHH-H
Confidence 6999999999995553321 11110 0112222211111 11 356689999999999999887 4
Q ss_pred hhhhccCCEEEEEEEccC
Q psy9524 63 ELIFARCGALIFVIDTSM 80 (81)
Q Consensus 63 ~~~~~~~~~~i~v~D~~~ 80 (81)
..+++.+|++|+|+|+++
T Consensus 88 ~~~l~~aD~aILVvDat~ 105 (595)
T TIGR01393 88 SRSLAACEGALLLVDAAQ 105 (595)
T ss_pred HHHHHhCCEEEEEecCCC
Confidence 589999999999999976
No 166
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.46 E-value=2e-13 Score=78.68 Aligned_cols=39 Identities=21% Similarity=0.391 Sum_probs=33.9
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
++.+.+.+|||||++.|..... .+++.+|++++|+|+++
T Consensus 68 ~~~~~i~iiDtpG~~~f~~~~~-~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 68 GKSYLFNIIDTPGHVNFMDEVA-AALRLSDGVVLVVDVVE 106 (213)
T ss_pred CCEEEEEEEECCCCcchHHHHH-HHHHhCCEEEEEEECCC
Confidence 5668899999999999977734 88999999999999875
No 167
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.46 E-value=1.7e-13 Score=88.60 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=50.9
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecC---------------CceeEEEEEecCCCccccccchhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIAN---------------SSFLQYQLWDCPGQMDFQDFDAEL 64 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~l~~~D~~G~~~~~~~~~~~ 64 (81)
+|..++|||||++.+.+.... .+...+..+++........ .+...+.+|||||++.|..+ +..
T Consensus 10 iG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l-~~~ 88 (590)
T TIGR00491 10 LGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNL-RKR 88 (590)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHH-HHH
Confidence 699999999999777554222 2111111111111111100 01123889999999999998 558
Q ss_pred hhccCCEEEEEEEccC
Q psy9524 65 IFARCGALIFVIDTSM 80 (81)
Q Consensus 65 ~~~~~~~~i~v~D~~~ 80 (81)
+++.+|++++|+|+++
T Consensus 89 ~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 89 GGALADLAILIVDINE 104 (590)
T ss_pred HHhhCCEEEEEEECCc
Confidence 8999999999999975
No 168
>KOG1673|consensus
Probab=99.46 E-value=3.9e-14 Score=77.96 Aligned_cols=79 Identities=25% Similarity=0.347 Sum_probs=59.0
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++.+|||||+ .+..+.+.+........ ....+.....+..+.+.+||.+||+++..+.| ....++-+++++||++
T Consensus 26 lGD~qiGKTs~mvkYV~~~~de~~~q~~Gv-N~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP-iac~dsvaIlFmFDLt 103 (205)
T KOG1673|consen 26 LGDAQIGKTSLMVKYVQNEYDEEYTQTLGV-NFMDKTVSIRGTDISFSIWDLGGQREFINMLP-IACKDSVAILFMFDLT 103 (205)
T ss_pred ecccccCceeeehhhhcchhHHHHHHHhCc-cceeeEEEecceEEEEEEEecCCcHhhhccCc-eeecCcEEEEEEEecC
Confidence 699999999996 66655555433322222 22344444457889999999999999999866 8999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
.+
T Consensus 104 ~r 105 (205)
T KOG1673|consen 104 RR 105 (205)
T ss_pred ch
Confidence 53
No 169
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.46 E-value=2e-13 Score=89.98 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=53.5
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEee-cCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDI-ANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|..++|||||++.+..... ..+..............+ .++....+.||||||++.|..+ +..+++.+|++|+|+|+
T Consensus 250 vGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~m-r~rg~~~aDiaILVVDA 328 (742)
T CHL00189 250 LGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSM-RSRGANVTDIAILIIAA 328 (742)
T ss_pred ECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHH-HHHHHHHCCEEEEEEEC
Confidence 69999999999976644322 222111111111111111 1235688999999999999998 54899999999999998
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
.+
T Consensus 329 ~d 330 (742)
T CHL00189 329 DD 330 (742)
T ss_pred cC
Confidence 75
No 170
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.46 E-value=2.8e-13 Score=79.24 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=48.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----cc--hhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----FD--AELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~~--~~~~~~~~~~~i~ 74 (81)
+|++|||||||++.+.+....... ....+.......+. .....+++||+||+..... +. ...+++++|++++
T Consensus 6 vG~~~~GKStLl~~Ltg~~~~v~~-~~~tT~~~~~g~~~-~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il~ 83 (233)
T cd01896 6 VGFPSVGKSTLLSKLTNTKSEVAA-YEFTTLTCVPGVLE-YKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLILM 83 (233)
T ss_pred ECCCCCCHHHHHHHHHCCCccccC-CCCccccceEEEEE-ECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEEEE
Confidence 699999999999888665422110 01111111222222 3457899999999854331 10 1157899999999
Q ss_pred EEEccC
Q psy9524 75 VIDTSM 80 (81)
Q Consensus 75 v~D~~~ 80 (81)
|+|+++
T Consensus 84 V~D~t~ 89 (233)
T cd01896 84 VLDATK 89 (233)
T ss_pred EecCCc
Confidence 999876
No 171
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.45 E-value=5.4e-13 Score=73.02 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=48.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-------hhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-------AELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~~~~~~~~~i 73 (81)
+|.+|+|||||++.+.+............+......... .....+.+||++|........ ....+..+|+++
T Consensus 9 ~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~ 87 (168)
T cd04163 9 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYT-DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVL 87 (168)
T ss_pred ECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEE-cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEE
Confidence 599999999999877554321111111111111122222 445778999999976443210 225688899999
Q ss_pred EEEEccCC
Q psy9524 74 FVIDTSMG 81 (81)
Q Consensus 74 ~v~D~~~~ 81 (81)
+|+|++++
T Consensus 88 ~v~d~~~~ 95 (168)
T cd04163 88 FVVDASEP 95 (168)
T ss_pred EEEECCCc
Confidence 99999763
No 172
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.44 E-value=1.6e-13 Score=77.89 Aligned_cols=79 Identities=23% Similarity=0.215 Sum_probs=46.5
Q ss_pred CCCCCCcHhHHHHHHhcc-----CCCCce-eeecceee--eEEEeec-----------CCceeEEEEEecCCCccccccc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-----MSPNET-LFLEGTNK--MTKEDIA-----------NSSFLQYQLWDCPGQMDFQDFD 61 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-----~~~~~~-~~~~~~~~--~~~~~~~-----------~~~~~~l~~~D~~G~~~~~~~~ 61 (81)
+|+.++|||||++.+... +..... .....+.. .....+. ..+...+.+||+||+..+....
T Consensus 6 ~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~ 85 (192)
T cd01889 6 LGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTI 85 (192)
T ss_pred EecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHH
Confidence 599999999999766542 111110 00011111 1111111 1346789999999997653331
Q ss_pred hhhhhccCCEEEEEEEccC
Q psy9524 62 AELIFARCGALIFVIDTSM 80 (81)
Q Consensus 62 ~~~~~~~~~~~i~v~D~~~ 80 (81)
. ...+.+|++++|+|+++
T Consensus 86 ~-~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 86 I-GGAQIIDLMLLVVDATK 103 (192)
T ss_pred H-HHHhhCCEEEEEEECCC
Confidence 3 34566899999999875
No 173
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.44 E-value=3e-13 Score=74.64 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=45.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----------cchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----------FDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----------~~~~~~~~~~~ 70 (81)
+|++|+|||||++.+.+............+......... .....+.+||++|...... .....+++.+|
T Consensus 8 ~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d 86 (174)
T cd01895 8 IGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFE-YDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERAD 86 (174)
T ss_pred EcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEE-ECCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcC
Confidence 699999999999877554321100000111111111111 2234578999999754311 11113567899
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++++|+|.+++
T Consensus 87 ~vi~v~d~~~~ 97 (174)
T cd01895 87 VVLLVIDATEG 97 (174)
T ss_pred eEEEEEeCCCC
Confidence 99999998764
No 174
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.44 E-value=6.1e-13 Score=88.23 Aligned_cols=76 Identities=16% Similarity=0.163 Sum_probs=52.2
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|..++|||||++.|.+ ++...+...+....+.....+ ....+.||||||++.|..+ +...++.+|++|+|||+.
T Consensus 296 mGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~---~~~~ItfiDTPGhe~F~~m-~~rga~~aDiaILVVdAd 371 (787)
T PRK05306 296 MGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVET---NGGKITFLDTPGHEAFTAM-RARGAQVTDIVVLVVAAD 371 (787)
T ss_pred ECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEE---CCEEEEEEECCCCccchhH-HHhhhhhCCEEEEEEECC
Confidence 69999999999976643 333222222222222222112 2367899999999999998 547889999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 372 d 372 (787)
T PRK05306 372 D 372 (787)
T ss_pred C
Confidence 6
No 175
>KOG4423|consensus
Probab=99.44 E-value=7.4e-16 Score=86.70 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=62.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.++||||++ +++...+...+..++........-.+.+...+++++||.+||++|..+.. .||+.+++..+|||++
T Consensus 31 ig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtr-Vyykea~~~~iVfdvt 109 (229)
T KOG4423|consen 31 IGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTR-VYYKEAHGAFIVFDVT 109 (229)
T ss_pred eeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEE-EEecCCcceEEEEEcc
Confidence 589999999998 55555555555444454444455556666778999999999999999965 9999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
..
T Consensus 110 ~s 111 (229)
T KOG4423|consen 110 RS 111 (229)
T ss_pred cc
Confidence 63
No 176
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.44 E-value=2.5e-13 Score=84.94 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=47.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc--------cccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM--------DFQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... .....+.+|||||.. .+..... .+++.+|++
T Consensus 5 vG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~-~~~~~~~liDTpG~~~~~~~~~~~~~~~~~-~~~~~ad~v 82 (429)
T TIGR03594 5 VGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAE-WGGREFILIDTGGIEEDDDGLDKQIREQAE-IAIEEADVI 82 (429)
T ss_pred ECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEE-ECCeEEEEEECCCCCCcchhHHHHHHHHHH-HHHhhCCEE
Confidence 699999999999877654321111111111111111111 234569999999963 3333323 678899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|..+
T Consensus 83 l~vvD~~~ 90 (429)
T TIGR03594 83 LFVVDGRE 90 (429)
T ss_pred EEEEeCCC
Confidence 99999875
No 177
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.43 E-value=3.8e-13 Score=87.04 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=52.1
Q ss_pred CCCCCCcHhHHHHHHhcc----CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK----MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~ 76 (81)
+|..++|||||++.|.+. +..+....+.....+.. +. .....+.+||+||+++|..... .++.++|++++|+
T Consensus 6 iG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~--~~-~~~~~v~~iDtPGhe~f~~~~~-~g~~~aD~aILVV 81 (581)
T TIGR00475 6 AGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAY--FP-LPDYRLGFIDVPGHEKFISNAI-AGGGGIDAALLVV 81 (581)
T ss_pred ECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEE--EE-eCCEEEEEEECCCHHHHHHHHH-hhhccCCEEEEEE
Confidence 599999999999888643 22222111222222222 22 2237899999999999877634 7889999999999
Q ss_pred EccC
Q psy9524 77 DTSM 80 (81)
Q Consensus 77 D~~~ 80 (81)
|+++
T Consensus 82 Da~~ 85 (581)
T TIGR00475 82 DADE 85 (581)
T ss_pred ECCC
Confidence 9976
No 178
>PTZ00099 rab6; Provisional
Probab=99.42 E-value=6.4e-13 Score=74.86 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=46.1
Q ss_pred ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 17 QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
+.|.+.+.++........... .++..+++.||||+|+++++.+ +..|++++|++|+|||++++
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~-~~~~~v~l~iwDt~G~e~~~~~-~~~~~~~ad~~ilv~D~t~~ 65 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLY-LDEGPVRLQLWDTAGQERFRSL-IPSYIRDSAAAIVVYDITNR 65 (176)
T ss_pred CCcCCCCCCccceEEEEEEEE-ECCEEEEEEEEECCChHHhhhc-cHHHhCCCcEEEEEEECCCH
Confidence 345555544444443222223 3477899999999999999998 55899999999999999873
No 179
>KOG3883|consensus
Probab=99.42 E-value=1.1e-12 Score=72.16 Aligned_cols=80 Identities=19% Similarity=0.245 Sum_probs=58.6
Q ss_pred CCCCCCcHhHHHH-HHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccc-cccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQK-VVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF-QDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-~~~~~~~~~~~~~~~i~v~D 77 (81)
+|..+||||++|+ .+.++-.++ +..++..+++........+..-++.|+||+|-..+ ..+ ++.|++-+|++++||+
T Consensus 15 cG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eL-prhy~q~aDafVLVYs 93 (198)
T KOG3883|consen 15 CGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQEL-PRHYFQFADAFVLVYS 93 (198)
T ss_pred ECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhh-hHhHhccCceEEEEec
Confidence 4788999999994 445544333 44444444555555555566678999999998888 456 7799999999999999
Q ss_pred ccCC
Q psy9524 78 TSMG 81 (81)
Q Consensus 78 ~~~~ 81 (81)
..|+
T Consensus 94 ~~d~ 97 (198)
T KOG3883|consen 94 PMDP 97 (198)
T ss_pred CCCH
Confidence 8764
No 180
>PRK00089 era GTPase Era; Reviewed
Probab=99.41 E-value=4.4e-13 Score=80.35 Aligned_cols=78 Identities=14% Similarity=0.134 Sum_probs=48.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... ....++.+|||||...... ..+ ..+.++|++
T Consensus 11 iG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~-~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~-~~~~~~D~i 88 (292)
T PRK00089 11 VGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVT-EDDAQIIFVDTPGIHKPKRALNRAMNKAAW-SSLKDVDLV 88 (292)
T ss_pred ECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEE-cCCceEEEEECCCCCCchhHHHHHHHHHHH-HHHhcCCEE
Confidence 699999999999888665322111111111111111122 3447899999999754321 212 467899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+++
T Consensus 89 l~vvd~~~ 96 (292)
T PRK00089 89 LFVVDADE 96 (292)
T ss_pred EEEEeCCC
Confidence 99999876
No 181
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=1.1e-12 Score=82.07 Aligned_cols=78 Identities=15% Similarity=0.205 Sum_probs=47.4
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc----------hhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD----------AELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~----------~~~~~~~ 68 (81)
+|.+++|||||++.+.+... ...... .+.......+. .....+.+|||||.+++.... ...+++.
T Consensus 178 vG~~~~GKSsLin~l~~~~~~~~~~~~g--tt~~~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 254 (429)
T TIGR03594 178 IGRPNVGKSTLVNALLGEERVIVSDIAG--TTRDSIDIPFE-RNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER 254 (429)
T ss_pred ECCCCCCHHHHHHHHHCCCeeecCCCCC--ceECcEeEEEE-ECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHh
Confidence 69999999999987755421 111111 11111111111 123378999999986654321 1246889
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|++|+|+|++++
T Consensus 255 ad~~ilV~D~~~~ 267 (429)
T TIGR03594 255 ADVVLLVLDATEG 267 (429)
T ss_pred CCEEEEEEECCCC
Confidence 9999999998763
No 182
>PRK10218 GTP-binding protein; Provisional
Probab=99.41 E-value=1.4e-12 Score=84.74 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=54.1
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCCce------------eeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPNET------------LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..+.. .+..... .....++......+. .+.+++++|||||+..|... +..+
T Consensus 11 iGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~-~~~~~inliDTPG~~df~~~-v~~~ 88 (607)
T PRK10218 11 IAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIK-WNDYRINIVDTPGHADFGGE-VERV 88 (607)
T ss_pred ECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEe-cCCEEEEEEECCCcchhHHH-HHHH
Confidence 58999999999955533 2222110 111222222233333 56789999999999999887 5589
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++|+|+|+++
T Consensus 89 l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 89 MSMVDSVLLVVDAFD 103 (607)
T ss_pred HHhCCEEEEEEeccc
Confidence 999999999999875
No 183
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.40 E-value=1.4e-12 Score=74.84 Aligned_cols=36 Identities=17% Similarity=0.163 Sum_probs=30.5
Q ss_pred eEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.++.|||+||++.|..... ..++.+|++++|+|+++
T Consensus 83 ~~i~~iDtPG~~~~~~~~~-~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 83 RHVSFVDCPGHEILMATML-SGAAVMDGALLLIAANE 118 (203)
T ss_pred cEEEEEECCChHHHHHHHH-HhhhcCCEEEEEEECCC
Confidence 6789999999998877533 67788999999999875
No 184
>PRK04213 GTP-binding protein; Provisional
Probab=99.40 E-value=6.6e-13 Score=75.64 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=43.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC-----------Cccccccchhhhhc--
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG-----------QMDFQDFDAELIFA-- 67 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~~~~~~-- 67 (81)
+|++|||||||++.+.+....... .+...........+ .+.+||++| +++++.+ +..+++
T Consensus 15 ~G~~~~GKSsLin~l~~~~~~~~~---~~~~t~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~~ 87 (201)
T PRK04213 15 VGRSNVGKSTLVRELTGKKVRVGK---RPGVTRKPNHYDWG---DFILTDLPGFGFMSGVPKEVQEKIKDE-IVRYIEDN 87 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCCccCC---CCceeeCceEEeec---ceEEEeCCccccccccCHHHHHHHHHH-HHHHHHhh
Confidence 699999999999877654322211 11111111111111 589999999 5666665 335554
Q ss_pred --cCCEEEEEEEccC
Q psy9524 68 --RCGALIFVIDTSM 80 (81)
Q Consensus 68 --~~~~~i~v~D~~~ 80 (81)
.++++++|+|.++
T Consensus 88 ~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 88 ADRILAAVLVVDGKS 102 (201)
T ss_pred hhhheEEEEEEeCcc
Confidence 3568888888753
No 185
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.40 E-value=8.6e-13 Score=74.17 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=44.9
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCc----------cccccchhhhhcc-
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----------DFQDFDAELIFAR- 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~~~~~- 68 (81)
+|++|+|||||++.+.+.. ..........+......... -.+.+||+||.. .+..+.. .|++.
T Consensus 24 vG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpG~~~~~~~~~~~~~~~~~~~-~~l~~~ 98 (179)
T TIGR03598 24 AGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN----DGFRLVDLPGYGYAKVSKEEKEKWQKLIE-EYLEKR 98 (179)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC----CcEEEEeCCCCccccCChhHHHHHHHHHH-HHHHhC
Confidence 6999999999998776653 22222222222222222221 158999999953 2333322 45554
Q ss_pred --CCEEEEEEEccC
Q psy9524 69 --CGALIFVIDTSM 80 (81)
Q Consensus 69 --~~~~i~v~D~~~ 80 (81)
++++++|+|.++
T Consensus 99 ~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 99 ENLKGVVLLMDIRH 112 (179)
T ss_pred hhhcEEEEEecCCC
Confidence 579999999875
No 186
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.40 E-value=9.8e-13 Score=74.47 Aligned_cols=75 Identities=17% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCC----------ccccccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ----------MDFQDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~~~~~ 69 (81)
+|++|+|||||++.+.+. +..........+....... ...++.+||+||. +.+..+ ...+++.+
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~ 104 (196)
T PRK00454 30 AGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKL-IEEYLRTR 104 (196)
T ss_pred EcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHH-HHHHHHhC
Confidence 699999999999877664 2332222222222222211 1367999999994 333334 23566654
Q ss_pred ---CEEEEEEEccC
Q psy9524 70 ---GALIFVIDTSM 80 (81)
Q Consensus 70 ---~~~i~v~D~~~ 80 (81)
+++++|+|.++
T Consensus 105 ~~~~~~~~v~d~~~ 118 (196)
T PRK00454 105 ENLKGVVLLIDSRH 118 (196)
T ss_pred ccceEEEEEEecCC
Confidence 57888888764
No 187
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.39 E-value=3.3e-13 Score=76.26 Aligned_cols=75 Identities=25% Similarity=0.344 Sum_probs=47.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhh--hhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAEL--IFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~--~~~~~~~~i~v~D 77 (81)
+|++|+|||+|...|..+ ..+..++. ++... ..........+.+.|+||+++.+...... +.+.+.++|||+|
T Consensus 9 ~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~~---~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvD 84 (181)
T PF09439_consen 9 VGPSGSGKTALFSQLVNGKTVPTVTSM-ENNIA---YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVD 84 (181)
T ss_dssp E-STTSSHHHHHHHHHHSS---B---S-SEEEE---CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEE
T ss_pred EcCCCCCHHHHHHHHhcCCcCCeeccc-cCCce---EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEe
Confidence 599999999998655444 33333222 22211 11123455678999999999988743433 5889999999999
Q ss_pred cc
Q psy9524 78 TS 79 (81)
Q Consensus 78 ~~ 79 (81)
.+
T Consensus 85 Ss 86 (181)
T PF09439_consen 85 SS 86 (181)
T ss_dssp TT
T ss_pred Cc
Confidence 86
No 188
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.39 E-value=1.2e-12 Score=86.36 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=47.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc--------cccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF--------QDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~~~~~~~ 72 (81)
+|.++||||||++.+.+............+......... .....+.+|||+|.+.. ... ...+++.+|++
T Consensus 281 vG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~~~~~-~~~~~~~aD~i 358 (712)
T PRK09518 281 VGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAE-WAGTDFKLVDTGGWEADVEGIDSAIASQ-AQIAVSLADAV 358 (712)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEE-ECCEEEEEEeCCCcCCCCccHHHHHHHH-HHHHHHhCCEE
Confidence 699999999999887654321111111111111111111 23457899999997642 222 12578899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|+|+++
T Consensus 359 L~VvDa~~ 366 (712)
T PRK09518 359 VFVVDGQV 366 (712)
T ss_pred EEEEECCC
Confidence 99999875
No 189
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.39 E-value=1.1e-12 Score=84.90 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=50.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeec-----CCce-----e-----EEEEEecCCCccccccchhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIA-----NSSF-----L-----QYQLWDCPGQMDFQDFDAEL 64 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~-----~-----~l~~~D~~G~~~~~~~~~~~ 64 (81)
+|..++|||||++.+.+..... +......+.+....... .+.. . .+.+|||||++.|..+ +..
T Consensus 12 ~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~~~-~~~ 90 (586)
T PRK04004 12 LGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFTNL-RKR 90 (586)
T ss_pred ECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHHHH-HHH
Confidence 6999999999998886554322 11111111111111000 0111 1 2689999999999988 447
Q ss_pred hhccCCEEEEEEEccC
Q psy9524 65 IFARCGALIFVIDTSM 80 (81)
Q Consensus 65 ~~~~~~~~i~v~D~~~ 80 (81)
.++.+|++++|+|+++
T Consensus 91 ~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 91 GGALADIAILVVDINE 106 (586)
T ss_pred hHhhCCEEEEEEECCC
Confidence 8899999999999875
No 190
>PRK11058 GTPase HflX; Provisional
Probab=99.39 E-value=1e-12 Score=82.53 Aligned_cols=79 Identities=18% Similarity=0.143 Sum_probs=45.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccc--cccc-----hhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF--QDFD-----AELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--~~~~-----~~~~~~~~~~~ 72 (81)
+|.+|||||||++.|.+..... ... ..|.......+.-.....+.+|||+|..+. ..+. ....++.+|++
T Consensus 203 VG~~NaGKSSLlN~Lt~~~~~v~~~~--~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlI 280 (426)
T PRK11058 203 VGYTNAGKSTLFNRITEARVYAADQL--FATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLL 280 (426)
T ss_pred ECCCCCCHHHHHHHHhCCceeeccCC--CCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEE
Confidence 6999999999998886532111 111 111111111111122235789999997432 1110 11346889999
Q ss_pred EEEEEccCC
Q psy9524 73 IFVIDTSMG 81 (81)
Q Consensus 73 i~v~D~~~~ 81 (81)
|+|+|++++
T Consensus 281 L~VvDaS~~ 289 (426)
T PRK11058 281 LHVVDAADV 289 (426)
T ss_pred EEEEeCCCc
Confidence 999999875
No 191
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.39 E-value=6.7e-13 Score=76.37 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=31.5
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.+|||||+++|..... ..++.+|++|+|+|+++
T Consensus 74 ~~~~~~~liDTpG~~~~~~~~~-~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 74 TPKRKFIIADTPGHEQYTRNMV-TGASTADLAILLVDARK 112 (208)
T ss_pred cCCceEEEEECCcHHHHHHHHH-HhhhhCCEEEEEEECCC
Confidence 3456789999999988765423 67899999999999875
No 192
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.38 E-value=1.6e-12 Score=79.47 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=47.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCcc----ccccch--hhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----FQDFDA--ELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~~--~~~~~~~~~ 71 (81)
||.++||||||++.+.+..... +..+..+..+ .+......++.+||+||.-. ...+.. -.+++.+++
T Consensus 164 VG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G----~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v 239 (335)
T PRK12299 164 VGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLG----VVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL 239 (335)
T ss_pred EcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEE----EEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence 6999999999998886542221 1122233322 22212445689999999642 112311 134567999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+|+|+|+++
T Consensus 240 lI~ViD~s~ 248 (335)
T PRK12299 240 LLHLVDIEA 248 (335)
T ss_pred EEEEEcCCC
Confidence 999999986
No 193
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.38 E-value=3.1e-12 Score=77.81 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=50.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEe-------------------ecCCceeEEEEEecCCC----
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKED-------------------IANSSFLQYQLWDCPGQ---- 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~D~~G~---- 54 (81)
+|.++||||||++.+.+..... +..+..+..+..... ....+.+.+++||+||.
T Consensus 4 vG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga 83 (318)
T cd01899 4 VGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGA 83 (318)
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCc
Confidence 6999999999998876543221 112223443322211 11124478999999998
Q ss_pred ccccccchhh---hhccCCEEEEEEEcc
Q psy9524 55 MDFQDFDAEL---IFARCGALIFVIDTS 79 (81)
Q Consensus 55 ~~~~~~~~~~---~~~~~~~~i~v~D~~ 79 (81)
++++.+.. . .+++||++++|+|++
T Consensus 84 ~~~~glg~-~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 84 HEGKGLGN-KFLDDLRDADALIHVVDAS 110 (318)
T ss_pred cchhhHHH-HHHHHHHHCCEEEEEEeCC
Confidence 44555522 4 499999999999997
No 194
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.36 E-value=1.1e-12 Score=86.44 Aligned_cols=77 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCcc----------ccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----------FQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~~~~~ 68 (81)
+|.+|||||||++.+.+... ..+...+.. ......+. .....+.+|||+|..+ |..++...+++.
T Consensus 456 vG~~nvGKSSLin~l~~~~~~~v~~~~gtT~--d~~~~~~~-~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ 532 (712)
T PRK09518 456 VGRPNVGKSSLLNQLTHEERAVVNDLAGTTR--DPVDEIVE-IDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIER 532 (712)
T ss_pred ECCCCCCHHHHHHHHhCccccccCCCCCCCc--CcceeEEE-ECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhc
Confidence 69999999999977755432 111111111 11111111 1233467999999642 222222245789
Q ss_pred CCEEEEEEEccC
Q psy9524 69 CGALIFVIDTSM 80 (81)
Q Consensus 69 ~~~~i~v~D~~~ 80 (81)
+|++++|+|+++
T Consensus 533 advvilViDat~ 544 (712)
T PRK09518 533 SELALFLFDASQ 544 (712)
T ss_pred CCEEEEEEECCC
Confidence 999999999976
No 195
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=9.2e-13 Score=73.01 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=42.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc-----cccccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM-----DFQDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-----~~~~~~~~~~~~~~~~~i~v 75 (81)
+|.++||||||++.+.+..... ..+.... +. .. .+||+||+. .++.+ . ..++++|++++|
T Consensus 7 iG~~~~GKstl~~~l~~~~~~~-----~~~~~v~---~~-~~----~~iDtpG~~~~~~~~~~~~-~-~~~~~ad~il~v 71 (158)
T PRK15467 7 VGAVGAGKTTLFNALQGNYTLA-----RKTQAVE---FN-DK----GDIDTPGEYFSHPRWYHAL-I-TTLQDVDMLIYV 71 (158)
T ss_pred ECCCCCCHHHHHHHHcCCCccC-----ccceEEE---EC-CC----CcccCCccccCCHHHHHHH-H-HHHhcCCEEEEE
Confidence 6999999999998887654221 1111111 11 11 279999973 22223 2 347899999999
Q ss_pred EEccC
Q psy9524 76 IDTSM 80 (81)
Q Consensus 76 ~D~~~ 80 (81)
+|+++
T Consensus 72 ~d~~~ 76 (158)
T PRK15467 72 HGAND 76 (158)
T ss_pred EeCCC
Confidence 99985
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.36 E-value=2.2e-12 Score=83.77 Aligned_cols=40 Identities=28% Similarity=0.467 Sum_probs=35.4
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+.+++|||||++.|... +..+++.+|++|+|+|+++
T Consensus 70 dg~~~~lnLiDTPGh~dF~~~-v~~sl~~aD~aILVVDas~ 109 (600)
T PRK05433 70 DGETYILNLIDTPGHVDFSYE-VSRSLAACEGALLVVDASQ 109 (600)
T ss_pred CCCcEEEEEEECCCcHHHHHH-HHHHHHHCCEEEEEEECCC
Confidence 356789999999999999887 5589999999999999976
No 197
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.35 E-value=5.7e-12 Score=81.80 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=48.1
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-----hhhhhc--cCCEEEE
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-----AELIFA--RCGALIF 74 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-----~~~~~~--~~~~~i~ 74 (81)
|++|||||||++.+.+...... .....|.......+. .++.++++||+||+.++.... .+.++. .+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~-n~pG~Tv~~~~~~i~-~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVG-NWPGVTVEKKEGKLG-FQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeec-CCCCeEEEEEEEEEE-ECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999988866532111 111122222222222 234568999999998876541 224443 7899999
Q ss_pred EEEccC
Q psy9524 75 VIDTSM 80 (81)
Q Consensus 75 v~D~~~ 80 (81)
|+|.++
T Consensus 79 VvDat~ 84 (591)
T TIGR00437 79 VVDASN 84 (591)
T ss_pred EecCCc
Confidence 999875
No 198
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.34 E-value=2.9e-12 Score=80.34 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=46.6
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----------cchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----------FDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----------~~~~~~~~~ 68 (81)
+|.+++|||||++.+.+... ..... ..+.......+. .....+.+|||+|..+... .....+++.
T Consensus 179 vG~~n~GKStlin~ll~~~~~~~~~~~--gtt~~~~~~~~~-~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 255 (435)
T PRK00093 179 IGRPNVGKSSLINALLGEERVIVSDIA--GTTRDSIDTPFE-RDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER 255 (435)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCC--CceEEEEEEEEE-ECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 69999999999977754321 11111 111111111121 2345678999999654322 111247789
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|++|+|+|++++
T Consensus 256 ad~~ilViD~~~~ 268 (435)
T PRK00093 256 ADVVLLVIDATEG 268 (435)
T ss_pred CCEEEEEEeCCCC
Confidence 9999999999863
No 199
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.34 E-value=3.6e-12 Score=71.58 Aligned_cols=80 Identities=21% Similarity=0.164 Sum_probs=55.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC--------ceeeec-ceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN--------ETLFLE-GTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~ 71 (81)
.|+-++|||++++.+..+.... .....+ -|..+.......+....++++++|||++|+.+ |..+++++.+
T Consensus 16 ~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm-~~~l~~ga~g 94 (187)
T COG2229 16 IGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFM-WEILSRGAVG 94 (187)
T ss_pred EcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHH-HHHHhCCcce
Confidence 4889999999998886665311 000000 11111111122245577899999999999999 8899999999
Q ss_pred EEEEEEccCC
Q psy9524 72 LIFVIDTSMG 81 (81)
Q Consensus 72 ~i~v~D~~~~ 81 (81)
+|+++|.+.+
T Consensus 95 aivlVDss~~ 104 (187)
T COG2229 95 AIVLVDSSRP 104 (187)
T ss_pred EEEEEecCCC
Confidence 9999998864
No 200
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.34 E-value=3e-12 Score=76.06 Aligned_cols=78 Identities=17% Similarity=0.223 Sum_probs=50.5
Q ss_pred CCCCCCcHhHHHHHHhccCCC-Cc--ee--------------eecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NE--TL--------------FLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~--~~--------------~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|.+|+|||||++.+...... .. .. ....+.......+. ....++.+|||||+..|... ..
T Consensus 5 vG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~~f~~~-~~ 82 (268)
T cd04170 5 VGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLE-WKGHKINLIDTPGYADFVGE-TR 82 (268)
T ss_pred ECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEE-ECCEEEEEEECcCHHHHHHH-HH
Confidence 699999999999766332111 00 00 00111122222222 35678999999999887766 34
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++++|+|.++
T Consensus 83 ~~l~~aD~~i~Vvd~~~ 99 (268)
T cd04170 83 AALRAADAALVVVSAQS 99 (268)
T ss_pred HHHHHCCEEEEEEeCCC
Confidence 88999999999999875
No 201
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.33 E-value=4e-12 Score=77.65 Aligned_cols=75 Identities=19% Similarity=0.216 Sum_probs=47.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCccc----cccchhhh---hccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF----QDFDAELI---FARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~~---~~~~~ 70 (81)
||.++||||||++.+.+..... +..+..+..+. +.-....++.+||+||.... ..+.. .+ +..++
T Consensus 163 vG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~----v~~~~~~~~~i~D~PGli~~a~~~~gLg~-~flrhierad 237 (329)
T TIGR02729 163 VGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGV----VRVDDGRSFVIADIPGLIEGASEGAGLGH-RFLKHIERTR 237 (329)
T ss_pred EcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEE----EEeCCceEEEEEeCCCcccCCcccccHHH-HHHHHHHhhC
Confidence 6999999999998886543211 11222333322 22123467899999997532 22322 44 44699
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++++|+|+++
T Consensus 238 ~ll~VvD~s~ 247 (329)
T TIGR02729 238 VLLHLIDISP 247 (329)
T ss_pred EEEEEEcCcc
Confidence 9999999985
No 202
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.33 E-value=3.2e-12 Score=74.37 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=34.6
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
++.+++.+|||||++.|..... .+++.+|++++|+|+++
T Consensus 70 ~~~~~i~iiDTPG~~~f~~~~~-~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 70 GNEYLINLIDSPGHVDFSSEVT-AALRLCDGALVVVDAVE 108 (222)
T ss_pred CCceEEEEECCCCccccHHHHH-HHHHhcCeeEEEEECCC
Confidence 4478899999999999988745 89999999999999875
No 203
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.33 E-value=3.3e-12 Score=67.32 Aligned_cols=77 Identities=19% Similarity=0.248 Sum_probs=44.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc----------cccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF----------QDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----------~~~~~~~~~~~~~ 70 (81)
+|.+|+|||||++.|.+............|......... .....+.++||||-..- ... . ..++.+|
T Consensus 5 iG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~-~-~~~~~~d 81 (116)
T PF01926_consen 5 IGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDNDGKEIRKF-L-EQISKSD 81 (116)
T ss_dssp EESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHHHHHHHHH-H-HHHCTES
T ss_pred ECCCCCCHHHHHHHHhccccccccccccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHHHHHHHHH-H-HHHHHCC
Confidence 599999999999888764221111111112112111111 23445679999995421 112 3 3448899
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++++|+|.++
T Consensus 82 ~ii~vv~~~~ 91 (116)
T PF01926_consen 82 LIIYVVDASN 91 (116)
T ss_dssp EEEEEEETTS
T ss_pred EEEEEEECCC
Confidence 9999999654
No 204
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.33 E-value=5.1e-12 Score=79.26 Aligned_cols=39 Identities=21% Similarity=0.358 Sum_probs=32.1
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..++.+|||||+++|..... ..++.+|++++|+|+++
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~-~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 81 TDKYYFTIVDCPGHRDFVKNMI-TGASQADAAVLVVAADD 119 (425)
T ss_pred cCCeEEEEEECCCcccchhhHh-hchhcCCEEEEEEEccc
Confidence 4667899999999998866424 55789999999999986
No 205
>KOG3887|consensus
Probab=99.32 E-value=9.8e-13 Score=77.25 Aligned_cols=80 Identities=68% Similarity=1.076 Sum_probs=68.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc--chhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF--DAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--~~~~~~~~~~~~i~v~D~ 78 (81)
+|.+.+||||+.+...+++.|+++...+.|.....+.+. +.-+.+++||.|||..+... -+...++++-++|+|+|+
T Consensus 33 MG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is-~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDa 111 (347)
T KOG3887|consen 33 MGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHIS-NSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDA 111 (347)
T ss_pred EeecccCcchhhheeeeccCCCceeEeeccCcccHhhhh-hhhcceEEeecCCccccCCCccCHHHHHhccCeEEEEEec
Confidence 588999999999988999999999999999777777666 57789999999999877663 244678999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 112 Qdd 114 (347)
T KOG3887|consen 112 QDD 114 (347)
T ss_pred hHH
Confidence 864
No 206
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.30 E-value=1.2e-11 Score=77.71 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=46.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCcc----ccccchhhh---hccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----FQDFDAELI---FARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~~~~~---~~~~~ 70 (81)
||.++||||||++.+.+.-... +..+..|.. ..+......++.+||+||... ...+.. .| +..++
T Consensus 164 VG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~Pnl----G~v~~~~~~~~~laD~PGliega~~~~gLg~-~fLrhier~~ 238 (424)
T PRK12297 164 VGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNL----GVVETDDGRSFVMADIPGLIEGASEGVGLGH-QFLRHIERTR 238 (424)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCcceeceEE----EEEEEeCCceEEEEECCCCcccccccchHHH-HHHHHHhhCC
Confidence 6999999999998886543221 122222322 222212256789999999642 222322 44 44599
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++|+|+|+++
T Consensus 239 llI~VID~s~ 248 (424)
T PRK12297 239 VIVHVIDMSG 248 (424)
T ss_pred EEEEEEeCCc
Confidence 9999999974
No 207
>KOG0077|consensus
Probab=99.29 E-value=1.2e-12 Score=72.66 Aligned_cols=74 Identities=18% Similarity=0.328 Sum_probs=58.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|..|+|||||++.|.+.--.... ||.....+.+. -.+++++.+|.+|+..-+.. |+.|+..++++++.+|+-|
T Consensus 26 lGLDNAGKTTLLHMLKdDrl~qhv----PTlHPTSE~l~-Ig~m~ftt~DLGGH~qArr~-wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 26 LGLDNAGKTTLLHMLKDDRLGQHV----PTLHPTSEELS-IGGMTFTTFDLGGHLQARRV-WKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred EeecCCchhhHHHHHccccccccC----CCcCCChHHhe-ecCceEEEEccccHHHHHHH-HHHHHhhhceeEeeeehhh
Confidence 588999999999888665444443 34333444444 56788999999999999998 8899999999999999865
No 208
>COG1159 Era GTPase [General function prediction only]
Probab=99.28 E-value=5.9e-12 Score=75.27 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~~~~~ 72 (81)
+|.++||||||++.+.++-..--+.....|...-..... ....++-+.||||--.-+. ..+ ..+.++|++
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t-~~~~QiIfvDTPGih~pk~~l~~~m~~~a~-~sl~dvDli 89 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVT-TDNAQIIFVDTPGIHKPKHALGELMNKAAR-SALKDVDLI 89 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEE-cCCceEEEEeCCCCCCcchHHHHHHHHHHH-HHhccCcEE
Confidence 699999999999888766433222222222222223333 5578899999999433222 224 678899999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+..
T Consensus 90 lfvvd~~~ 97 (298)
T COG1159 90 LFVVDADE 97 (298)
T ss_pred EEEEeccc
Confidence 99999875
No 209
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.5e-11 Score=77.09 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc-------chhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF-------DAELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~~~~~~~~~i 73 (81)
+|.+|||||||++.|.++-..--+.....|..+-.+.+. -..+.+.+.||+|-+.-... +-....++||.++
T Consensus 223 iG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~-i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL 301 (454)
T COG0486 223 IGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDIN-LNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVL 301 (454)
T ss_pred ECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEE-ECCEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEE
Confidence 599999999999999776444333333333334444443 67788999999998755442 1226788999999
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
+|+|.+.
T Consensus 302 ~v~D~~~ 308 (454)
T COG0486 302 FVLDASQ 308 (454)
T ss_pred EEEeCCC
Confidence 9999986
No 210
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.28 E-value=8.8e-12 Score=78.24 Aligned_cols=40 Identities=23% Similarity=0.371 Sum_probs=32.8
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
....++.|||+||+++|..... ..++.+|++++|+|++++
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~-~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMI-TGASQADAAVLVVAVGDG 121 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHH-hhhhhCCEEEEEEECCCC
Confidence 4567899999999998866423 567899999999999763
No 211
>PRK13351 elongation factor G; Reviewed
Probab=99.28 E-value=5.2e-12 Score=83.08 Aligned_cols=78 Identities=17% Similarity=0.161 Sum_probs=52.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC---------C--------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---------N--------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---------~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.+...... . .......+......... ....++++|||||+.+|... ..
T Consensus 14 iG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~-~~~~~i~liDtPG~~df~~~-~~ 91 (687)
T PRK13351 14 LAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCD-WDNHRINLIDTPGHIDFTGE-VE 91 (687)
T ss_pred ECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEE-ECCEEEEEEECCCcHHHHHH-HH
Confidence 699999999999655322110 0 00011222222222333 45688999999999998887 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++++|+|.++
T Consensus 92 ~~l~~aD~~ilVvd~~~ 108 (687)
T PRK13351 92 RSLRVLDGAVVVFDAVT 108 (687)
T ss_pred HHHHhCCEEEEEEeCCC
Confidence 89999999999999875
No 212
>KOG0096|consensus
Probab=99.28 E-value=8.4e-12 Score=70.58 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=59.4
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.|.|||+++ +.+.+.|......+.......... ..+...+++..||++|||.+..++. -||=++.+.|++||++
T Consensus 16 vGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f-~tn~g~irf~~wdtagqEk~gglrd-gyyI~~qcAiimFdVt 93 (216)
T KOG0096|consen 16 VGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLF-DTNRGQIRFNVWDTAGQEKKGGLRD-GYYIQGQCAIIMFDVT 93 (216)
T ss_pred ecCCcccccchhhhhhcccceecccCcceeEEeeeee-ecccCcEEEEeeecccceeeccccc-ccEEecceeEEEeeee
Confidence 599999999997 777888877766555544322221 1223459999999999999999954 8888889999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
.
T Consensus 94 s 94 (216)
T KOG0096|consen 94 S 94 (216)
T ss_pred e
Confidence 4
No 213
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.27 E-value=1.2e-11 Score=79.47 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=34.3
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+.+++++|||||+..|....+ .+++.+|++|+|+|+++
T Consensus 76 ~~~~~inliDTPG~~df~~~~~-~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 76 YRDCLINLLDTPGHEDFSEDTY-RTLTAVDSALMVIDAAK 114 (526)
T ss_pred ECCEEEEEEECCCchhhHHHHH-HHHHHCCEEEEEEecCC
Confidence 5678899999999999988646 78999999999999875
No 214
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.26 E-value=1.7e-11 Score=73.18 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=50.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-----------------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-----------------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.|....... .......+......... .+..++.+|||||+..|... +.
T Consensus 5 vGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~df~~~-~~ 82 (270)
T cd01886 5 IAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF-WKDHRINIIDTPGHVDFTIE-VE 82 (270)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE-ECCEEEEEEECCCcHHHHHH-HH
Confidence 5899999999996653211100 00011111111222222 35678999999999888776 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++|+|+|..+
T Consensus 83 ~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 83 RSLRVLDGAVAVFDAVA 99 (270)
T ss_pred HHHHHcCEEEEEEECCC
Confidence 89999999999999865
No 215
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.26 E-value=1.5e-11 Score=79.88 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=53.1
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCCc------------eeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPNE------------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|.. .+.... ......++......+. .+..++.+|||||+..|... ...+
T Consensus 7 iGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~-~~~~kinlIDTPGh~DF~~e-v~~~ 84 (594)
T TIGR01394 7 IAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIR-YNGTKINIVDTPGHADFGGE-VERV 84 (594)
T ss_pred EcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEE-ECCEEEEEEECCCHHHHHHH-HHHH
Confidence 58999999999955532 222211 0111223333333333 56789999999999999876 3489
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++++|+|+++
T Consensus 85 l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 85 LGMVDGVLLLVDASE 99 (594)
T ss_pred HHhCCEEEEEEeCCC
Confidence 999999999999875
No 216
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.25 E-value=1.2e-11 Score=78.79 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc----ccccc--hhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----FQDFD--AELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~--~~~~~~~~~~~i~ 74 (81)
||.++||||||++.|.+.-... ......|...+...+. ....++.+||+||... ...+. .-.++..++++|+
T Consensus 165 VG~PNAGKSTLln~Ls~akpkI-adypfTTl~P~lGvv~-~~~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv~ 242 (500)
T PRK12296 165 VGFPSAGKSSLISALSAAKPKI-ADYPFTTLVPNLGVVQ-AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLVH 242 (500)
T ss_pred EEcCCCCHHHHHHHHhcCCccc-cccCcccccceEEEEE-ECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEEE
Confidence 6899999999998886542221 1111122222333333 3446799999999532 11111 1135677999999
Q ss_pred EEEccC
Q psy9524 75 VIDTSM 80 (81)
Q Consensus 75 v~D~~~ 80 (81)
|+|+++
T Consensus 243 VVD~s~ 248 (500)
T PRK12296 243 VVDCAT 248 (500)
T ss_pred EECCcc
Confidence 999974
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.24 E-value=3.3e-11 Score=78.58 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=50.1
Q ss_pred CCCCCCcHhHHHHHHhcc----CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK----MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~ 76 (81)
+|..++|||||++.|.+. +.++.. ...|+..............+.+||+||+++|..... ..+..+|++++|+
T Consensus 6 ~GhvdhGKTtLi~aLtg~~~dr~~eE~~--rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~-~g~~~~D~~lLVV 82 (614)
T PRK10512 6 AGHVDHGKTTLLQAITGVNADRLPEEKK--RGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNML-AGVGGIDHALLVV 82 (614)
T ss_pred ECCCCCCHHHHHHHHhCCCCccchhccc--CCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHH-HHhhcCCEEEEEE
Confidence 589999999999888642 222211 122222211112112334589999999999865424 6788999999999
Q ss_pred EccC
Q psy9524 77 DTSM 80 (81)
Q Consensus 77 D~~~ 80 (81)
|+.+
T Consensus 83 da~e 86 (614)
T PRK10512 83 ACDD 86 (614)
T ss_pred ECCC
Confidence 9875
No 218
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.24 E-value=5.7e-11 Score=74.14 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=49.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEe-------------------ecCCceeEEEEEecCCC----
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKED-------------------IANSSFLQYQLWDCPGQ---- 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~D~~G~---- 54 (81)
+|.++||||||++.+.+..... ...+..+..+..... ..+...+.+++||+||.
T Consensus 7 vG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga 86 (396)
T PRK09602 7 VGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGA 86 (396)
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCc
Confidence 6999999999998886543321 112223443322110 11123367999999994
Q ss_pred ccccccchhhh---hccCCEEEEEEEcc
Q psy9524 55 MDFQDFDAELI---FARCGALIFVIDTS 79 (81)
Q Consensus 55 ~~~~~~~~~~~---~~~~~~~i~v~D~~ 79 (81)
...+.+ -+.+ ++++|++++|+|+.
T Consensus 87 ~~g~gl-g~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 87 HEGRGL-GNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cchhhH-HHHHHHHHHHCCEEEEEEeCC
Confidence 334444 2255 88999999999996
No 219
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.23 E-value=5e-11 Score=76.61 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.3
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+++.+|||||+..|....+ .+++.+|++|+|+|+++
T Consensus 77 ~~~~~inliDTPG~~df~~~~~-~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 77 YRDCLVNLLDTPGHEDFSEDTY-RTLTAVDNCLMVIDAAK 115 (527)
T ss_pred eCCeEEEEEECCChhhHHHHHH-HHHHhCCEEEEEEECCC
Confidence 5678999999999998887646 78999999999999875
No 220
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.21 E-value=4.1e-11 Score=65.71 Aligned_cols=75 Identities=17% Similarity=0.231 Sum_probs=42.9
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc----------ccccchhhhhcc-
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----------FQDFDAELIFAR- 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~~~~~- 68 (81)
+|++|+|||||++.+.+ ...+........+........ . ..+.+||++|... +... ...|+..
T Consensus 5 ~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~~~D~~g~~~~~~~~~~~~~~~~~-~~~~~~~~ 79 (170)
T cd01876 5 AGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N--DKFRLVDLPGYGYAKVSKEVKEKWGKL-IEEYLENR 79 (170)
T ss_pred EcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c--CeEEEecCCCccccccCHHHHHHHHHH-HHHHHHhC
Confidence 69999999999988863 332222222122211111111 1 2789999999432 3333 2245543
Q ss_pred --CCEEEEEEEccC
Q psy9524 69 --CGALIFVIDTSM 80 (81)
Q Consensus 69 --~~~~i~v~D~~~ 80 (81)
.+++++++|..+
T Consensus 80 ~~~~~~~~v~d~~~ 93 (170)
T cd01876 80 ENLKGVVLLIDSRH 93 (170)
T ss_pred hhhhEEEEEEEcCc
Confidence 467888988764
No 221
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.21 E-value=1.1e-10 Score=77.79 Aligned_cols=78 Identities=22% Similarity=0.203 Sum_probs=49.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc---------hhhhh--ccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD---------AELIF--ARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~---------~~~~~--~~~ 69 (81)
+|.+|||||||.+.+.+..... ......|......... ....++++||+||+..+.... ...++ ..+
T Consensus 9 vG~pNvGKSTLfN~Ltg~~~~v-gn~pGvTve~k~g~~~-~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~a 86 (772)
T PRK09554 9 IGNPNSGKTTLFNQLTGARQRV-GNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA 86 (772)
T ss_pred ECCCCCCHHHHHHHHhCCCCcc-CCCCCceEeeEEEEEE-cCceEEEEEECCCccccccccccccHHHHHHHHHHhccCC
Confidence 6999999999998886543211 1112222222222233 566789999999998765321 11343 378
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++++|+|.++
T Consensus 87 D~vI~VvDat~ 97 (772)
T PRK09554 87 DLLINVVDASN 97 (772)
T ss_pred CEEEEEecCCc
Confidence 99999999876
No 222
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.20 E-value=1.9e-11 Score=69.24 Aligned_cols=79 Identities=23% Similarity=0.217 Sum_probs=51.8
Q ss_pred CCCCCCcHhHHHHHHhccCCC--C---------------ceeeecceeeeEEEeec-CCceeEEEEEecCCCccccccch
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--N---------------ETLFLEGTNKMTKEDIA-NSSFLQYQLWDCPGQMDFQDFDA 62 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~---------------~~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~~~~~~~ 62 (81)
+|+.++|||||+..|...... . .......+......... ......+.++|+||+..|.....
T Consensus 9 ~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~f~~~~~ 88 (188)
T PF00009_consen 9 IGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHEDFIKEMI 88 (188)
T ss_dssp EESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHHHHHHHH
T ss_pred ECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccceeeccc
Confidence 589999999999666433211 0 00111122222222221 35667899999999998877644
Q ss_pred hhhhccCCEEEEEEEccC
Q psy9524 63 ELIFARCGALIFVIDTSM 80 (81)
Q Consensus 63 ~~~~~~~~~~i~v~D~~~ 80 (81)
..++.+|++|+|+|+.+
T Consensus 89 -~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 89 -RGLRQADIAILVVDAND 105 (188)
T ss_dssp -HHHTTSSEEEEEEETTT
T ss_pred -ceecccccceeeeeccc
Confidence 77899999999999875
No 223
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.19 E-value=4.8e-11 Score=69.18 Aligned_cols=39 Identities=18% Similarity=0.329 Sum_probs=31.8
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.+||+||+..|... ....++.+|++|+|+|+++
T Consensus 74 ~~~~~i~liDtpG~~~~~~~-~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 74 TEKYRFTILDAPGHRDFVPN-MITGASQADVAVLVVDARK 112 (219)
T ss_pred eCCeEEEEEECCChHHHHHH-HHHHhhhCCEEEEEEECCC
Confidence 45678999999999877654 3256788999999999976
No 224
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.17 E-value=4.1e-11 Score=74.93 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=31.0
Q ss_pred eeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+.+||+||+++|... +......+|++++|+|+++
T Consensus 79 ~~~i~liDtPGh~~f~~~-~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMAT-MLSGAALMDGALLVIAANE 115 (406)
T ss_pred ccEEEEEECCCHHHHHHH-HHHHHHHCCEEEEEEECCC
Confidence 467999999999999775 3367778899999999975
No 225
>KOG3886|consensus
Probab=99.16 E-value=6.9e-12 Score=73.12 Aligned_cols=80 Identities=30% Similarity=0.506 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc----cccchhhhhccCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF----QDFDAELIFARCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~----~~~~~~~~~~~~~~~i~v~ 76 (81)
+|.+|+||||+-..++.+...........|+.+.......-.++.+++||++||+.+ ........+++.+++++||
T Consensus 10 MGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vF 89 (295)
T KOG3886|consen 10 MGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVF 89 (295)
T ss_pred eccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeheeeeeee
Confidence 699999999996655555544445555666656555554345577999999999843 2223447788999999999
Q ss_pred EccC
Q psy9524 77 DTSM 80 (81)
Q Consensus 77 D~~~ 80 (81)
|++.
T Consensus 90 Dves 93 (295)
T KOG3886|consen 90 DVES 93 (295)
T ss_pred eccc
Confidence 9875
No 226
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.16 E-value=1.8e-10 Score=63.87 Aligned_cols=78 Identities=17% Similarity=0.147 Sum_probs=46.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-----hhhhh--ccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-----AELIF--ARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-----~~~~~--~~~~~~i 73 (81)
+|.++||||||.+.|.+.... -......|.......+. .....+.+.|+||.-...... ...++ ...|+++
T Consensus 6 vG~PNvGKStLfN~Ltg~~~~-v~n~pG~Tv~~~~g~~~-~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii 83 (156)
T PF02421_consen 6 VGNPNVGKSTLFNALTGAKQK-VGNWPGTTVEKKEGIFK-LGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLII 83 (156)
T ss_dssp EESTTSSHHHHHHHHHTTSEE-EEESTTSSSEEEEEEEE-ETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCce-ecCCCCCCeeeeeEEEE-ecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEE
Confidence 589999999999999776522 12222333333333333 344778999999954433311 22444 5799999
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
.|+|+++
T Consensus 84 ~VvDa~~ 90 (156)
T PF02421_consen 84 VVVDATN 90 (156)
T ss_dssp EEEEGGG
T ss_pred EECCCCC
Confidence 9999874
No 227
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.14 E-value=1.2e-10 Score=72.63 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----c--chhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----F--DAELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~--~~~~~~~~~~~~i~ 74 (81)
||.+|||||||++.|.+... .....+..|.......+......++.++|+||...-.. + .....+..++++++
T Consensus 165 VG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~ 243 (390)
T PRK12298 165 LGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLH 243 (390)
T ss_pred EcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEE
Confidence 69999999999988865432 21111112222222222212334589999999753211 1 01145788999999
Q ss_pred EEEcc
Q psy9524 75 VIDTS 79 (81)
Q Consensus 75 v~D~~ 79 (81)
|+|++
T Consensus 244 VVD~s 248 (390)
T PRK12298 244 LIDIA 248 (390)
T ss_pred EeccC
Confidence 99987
No 228
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.13 E-value=1e-10 Score=77.45 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=34.1
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+..+++.+|||||+..|..... ..++.+|++|+|+|+.+
T Consensus 83 ~~~~~i~liDTPG~~~f~~~~~-~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 83 GNEYLINLIDTPGHVDFGGDVT-RAMRAVDGAIVVVCAVE 121 (720)
T ss_pred CCceEEEEEeCCCccccHHHHH-HHHHhcCEEEEEEecCC
Confidence 6678999999999999877645 89999999999999865
No 229
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.13 E-value=2.6e-10 Score=65.19 Aligned_cols=76 Identities=20% Similarity=0.248 Sum_probs=42.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceee--eEEEeecCCceeEEEEEecCCCccccccchhhh-----hccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNK--MTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI-----FARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~-----~~~~~~~i 73 (81)
+|++|+|||||++.+.+...+........... .....+.......+.+||++|....... ...| +.++|.++
T Consensus 7 ~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~-~~~~l~~~~~~~~d~~l 85 (197)
T cd04104 7 TGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP-PDDYLEEMKFSEYDFFI 85 (197)
T ss_pred ECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC-HHHHHHHhCccCcCEEE
Confidence 59999999999998876433221111001000 0111111112346899999998644332 1133 66789888
Q ss_pred EEEE
Q psy9524 74 FVID 77 (81)
Q Consensus 74 ~v~D 77 (81)
++.|
T Consensus 86 ~v~~ 89 (197)
T cd04104 86 IISS 89 (197)
T ss_pred EEeC
Confidence 8754
No 230
>KOG1423|consensus
Probab=99.12 E-value=2.7e-10 Score=68.88 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=50.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc------cccc-----chhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD------FQDF-----DAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~------~~~~-----~~~~~~~~~ 69 (81)
||.+|||||+|.+.+.++-...-......|..-....+. ....++.|+||||--. +..+ .+......|
T Consensus 78 IG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~t-s~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~A 156 (379)
T KOG1423|consen 78 IGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIIT-SGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNA 156 (379)
T ss_pred EcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEe-cCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhC
Confidence 699999999999877665433322222222222223333 6778999999999321 1110 122567789
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++++++|+++
T Consensus 157 D~vvVv~Das~ 167 (379)
T KOG1423|consen 157 DCVVVVVDASA 167 (379)
T ss_pred CEEEEEEeccC
Confidence 99999999985
No 231
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.12 E-value=2.6e-10 Score=75.30 Aligned_cols=78 Identities=17% Similarity=0.075 Sum_probs=51.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC----ce-------------eeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN----ET-------------LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~----~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.|....... .. .....+.......+. .+..++.+|||||+.+|... ..
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~~~~~-~~ 93 (689)
T TIGR00484 16 SAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVF-WKGHRINIIDTPGHVDFTVE-VE 93 (689)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEE-ECCeEEEEEECCCCcchhHH-HH
Confidence 5899999999997663221110 00 001112222222222 35678999999999988776 45
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++|+|+|+++
T Consensus 94 ~~l~~~D~~ilVvda~~ 110 (689)
T TIGR00484 94 RSLRVLDGAVAVLDAVG 110 (689)
T ss_pred HHHHHhCEEEEEEeCCC
Confidence 89999999999999875
No 232
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.10 E-value=9.5e-11 Score=69.70 Aligned_cols=76 Identities=20% Similarity=0.262 Sum_probs=48.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-c--eeeecceeeeEEEeecCCceeEEEEEecCCCcc-------ccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-E--TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD-------FQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-------~~~~~~~~~~~~~~ 70 (81)
+|..|+|||||++.|+...... . .....++ .........-.+.|||+||-+. ++.. ...++...|
T Consensus 45 ~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~----~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~-~~d~l~~~D 119 (296)
T COG3596 45 MGATGAGKSSLINALFQGEVKEVSKVGVGTDIT----TRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQL-YRDYLPKLD 119 (296)
T ss_pred ecCCCCcHHHHHHHHHhccCceeeecccCCCch----hhHHhhccccceEEecCCCcccchhhhHHHHHH-HHHHhhhcc
Confidence 5899999999998886322211 1 1111111 1111113335689999999665 5555 348888999
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
.++++.|..|+
T Consensus 120 LvL~l~~~~dr 130 (296)
T COG3596 120 LVLWLIKADDR 130 (296)
T ss_pred EEEEeccCCCc
Confidence 99999988764
No 233
>PRK12740 elongation factor G; Reviewed
Probab=99.08 E-value=2.8e-10 Score=74.82 Aligned_cols=78 Identities=17% Similarity=0.144 Sum_probs=51.5
Q ss_pred CCCCCCcHhHHHHHHhccCC---C------C--------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS---P------N--------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~---~------~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||+..|..... . . .......++........ ...+.+.+|||||+..|... ..
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~-~~~~~i~liDtPG~~~~~~~-~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCE-WKGHKINLIDTPGHVDFTGE-VE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEE-ECCEEEEEEECCCcHHHHHH-HH
Confidence 69999999999965522211 0 0 00011222333333333 45688999999999887666 34
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++++|+|.++
T Consensus 79 ~~l~~aD~vllvvd~~~ 95 (668)
T PRK12740 79 RALRVLDGAVVVVCAVG 95 (668)
T ss_pred HHHHHhCeEEEEEeCCC
Confidence 78999999999999875
No 234
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.08 E-value=2.9e-10 Score=70.94 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCCCCCcHhHHHHHHhccCC--------------C-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--------------P-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|..... . .+......|.......+. .+..++.+||+||+++|..... ..
T Consensus 18 ~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~-~~~~~~~liDtpGh~~f~~~~~-~~ 95 (394)
T TIGR00485 18 IGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHADYVKNMI-TG 95 (394)
T ss_pred EeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEc-CCCEEEEEEECCchHHHHHHHH-HH
Confidence 58889999999976642100 0 001111222222222233 4556789999999998865423 45
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
...+|++++|+|+.+
T Consensus 96 ~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 96 AAQMDGAILVVSATD 110 (394)
T ss_pred HhhCCEEEEEEECCC
Confidence 567899999999875
No 235
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.08 E-value=3.9e-10 Score=64.55 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=49.9
Q ss_pred CCCCCCcHhHHHHHHhccCCC---C------------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---N------------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|...... . .......+.......+. .+..++.+.||||+..|..... ..
T Consensus 8 iGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~~~~~~~-~~ 85 (195)
T cd01884 8 IGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYE-TANRHYAHVDCPGHADYIKNMI-TG 85 (195)
T ss_pred ECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEec-CCCeEEEEEECcCHHHHHHHHH-HH
Confidence 589999999999655432100 0 00011222222222232 4556789999999988766534 67
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++++|+|+..
T Consensus 86 ~~~~D~~ilVvda~~ 100 (195)
T cd01884 86 AAQMDGAILVVSATD 100 (195)
T ss_pred hhhCCEEEEEEECCC
Confidence 889999999999864
No 236
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.08 E-value=1.7e-10 Score=72.33 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=27.8
Q ss_pred eEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.++.+||+||+++|..... .....+|++++|+|+++
T Consensus 85 ~~i~liDtPG~~~f~~~~~-~~~~~~D~~llVVDa~~ 120 (411)
T PRK04000 85 RRVSFVDAPGHETLMATML-SGAALMDGAILVIAANE 120 (411)
T ss_pred cEEEEEECCCHHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 6799999999998754312 34456799999999985
No 237
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.08 E-value=7.6e-10 Score=66.31 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=31.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCcee-------eecceeee---EEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETL-------FLEGTNKM---TKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|++|+|||||++.+.+........ ....+... ......++..+++.+|||||-
T Consensus 10 vG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGf 73 (276)
T cd01850 10 VGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGF 73 (276)
T ss_pred EcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCc
Confidence 6999999999997775543221110 11222211 112222356688999999994
No 238
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.07 E-value=4.3e-10 Score=68.29 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCcc--------ccccchhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD--------FQDFDAELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--------~~~~~~~~~~~~~~~ 71 (81)
+|.++|||||||+.|.+-..+. ....+ |......++. .+..++|+.|+||--. -+.. . ...|+||.
T Consensus 69 VGfPsvGKStLL~~LTnt~seva~y~FT--Tl~~VPG~l~-Y~ga~IQild~Pgii~gas~g~grG~~v-l-sv~R~ADl 143 (365)
T COG1163 69 VGFPSVGKSTLLNKLTNTKSEVADYPFT--TLEPVPGMLE-YKGAQIQLLDLPGIIEGASSGRGRGRQV-L-SVARNADL 143 (365)
T ss_pred EcCCCccHHHHHHHHhCCCccccccCce--ecccccceEe-ecCceEEEEcCcccccCcccCCCCccee-e-eeeccCCE
Confidence 6999999999999886654432 11111 1112223333 7889999999997321 1122 3 67889999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|+..
T Consensus 144 IiiVld~~~ 152 (365)
T COG1163 144 IIIVLDVFE 152 (365)
T ss_pred EEEEEecCC
Confidence 999999874
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.01 E-value=1e-09 Score=68.57 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=48.7
Q ss_pred CCCCCCcHhHHHHHHhccCC--------------C-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--------------P-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--------------~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|..... . .+......|.......+. .+..++.++||||+++|..... ..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~-~~~~~i~~iDtPGh~~f~~~~~-~~ 95 (396)
T PRK12735 18 IGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYE-TANRHYAHVDCPGHADYVKNMI-TG 95 (396)
T ss_pred ECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEc-CCCcEEEEEECCCHHHHHHHHH-hh
Confidence 58999999999976643100 0 000111122222222222 3456789999999988765434 56
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
...+|++++|+|+.+
T Consensus 96 ~~~aD~~llVvda~~ 110 (396)
T PRK12735 96 AAQMDGAILVVSAAD 110 (396)
T ss_pred hccCCEEEEEEECCC
Confidence 778999999999875
No 240
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.01 E-value=2.2e-09 Score=65.13 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=42.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccch--hhhh------ccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDA--ELIF------ARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~--~~~~------~~~~~~ 72 (81)
+|.+||||||+++.+.++...........+......... ....++.++||||......... ...+ ...|++
T Consensus 44 vGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~-~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvV 122 (313)
T TIGR00991 44 MGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRT-RAGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVL 122 (313)
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEE-ECCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEE
Confidence 699999999999888765432111110111111111111 3457899999999765422100 0111 158899
Q ss_pred EEEEEc
Q psy9524 73 IFVIDT 78 (81)
Q Consensus 73 i~v~D~ 78 (81)
++|..+
T Consensus 123 LyV~rL 128 (313)
T TIGR00991 123 LYVDRL 128 (313)
T ss_pred EEEecc
Confidence 999543
No 241
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.00 E-value=3.8e-09 Score=62.56 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=42.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc--cc-------hhhhhc--cC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--FD-------AELIFA--RC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--~~-------~~~~~~--~~ 69 (81)
+|.+|||||||++.+.+............+......... ....++.+|||||-..... .. ...++. ..
T Consensus 37 vG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~-~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~~i 115 (249)
T cd01853 37 LGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT-VDGFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKKTP 115 (249)
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE-ECCeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhccCC
Confidence 699999999999888765332211111112112222222 3456789999999664421 00 112343 46
Q ss_pred CEEEEEEEc
Q psy9524 70 GALIFVIDT 78 (81)
Q Consensus 70 ~~~i~v~D~ 78 (81)
+++++|..+
T Consensus 116 dvIL~V~rl 124 (249)
T cd01853 116 DVVLYVDRL 124 (249)
T ss_pred CEEEEEEcC
Confidence 788887644
No 242
>PRK12736 elongation factor Tu; Reviewed
Probab=98.98 E-value=1.5e-09 Score=67.83 Aligned_cols=78 Identities=19% Similarity=0.239 Sum_probs=48.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---------------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---------------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|.+..... +......|.......+. ....++.++|+||+++|..... .-
T Consensus 18 ~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~-~~~~~i~~iDtPGh~~f~~~~~-~~ 95 (394)
T PRK12736 18 IGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYE-TEKRHYAHVDCPGHADYVKNMI-TG 95 (394)
T ss_pred EccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEec-CCCcEEEEEECCCHHHHHHHHH-HH
Confidence 5899999999997664321100 00111222222222232 3456789999999998865423 55
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
...+|++++|+|+.+
T Consensus 96 ~~~~d~~llVvd~~~ 110 (394)
T PRK12736 96 AAQMDGAILVVAATD 110 (394)
T ss_pred HhhCCEEEEEEECCC
Confidence 678899999999875
No 243
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.96 E-value=1.5e-09 Score=68.21 Aligned_cols=80 Identities=18% Similarity=0.222 Sum_probs=48.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc----------cccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----------DFQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----------~~~~~~~~~~~~~~~ 70 (81)
+|.++||||||+|.+.++...--......|...-...+. .+.-++.+.||+|.+ .|...+-......++
T Consensus 184 iGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e-~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~ 262 (444)
T COG1160 184 IGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFE-RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERAD 262 (444)
T ss_pred EeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEE-ECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcC
Confidence 689999999999888655322111111111111111222 344567899999954 343333335677899
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
.+++|+|.+.+
T Consensus 263 vvllviDa~~~ 273 (444)
T COG1160 263 VVLLVIDATEG 273 (444)
T ss_pred EEEEEEECCCC
Confidence 99999999864
No 244
>PRK12739 elongation factor G; Reviewed
Probab=98.96 E-value=1.6e-09 Score=71.68 Aligned_cols=78 Identities=17% Similarity=0.088 Sum_probs=50.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC------c-----------eeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN------E-----------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~------~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.|....... . ......+.......+. .+..++.++||||+..|... ..
T Consensus 14 iGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~-~~~~~i~liDTPG~~~f~~e-~~ 91 (691)
T PRK12739 14 MAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKGHRINIIDTPGHVDFTIE-VE 91 (691)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEE-ECCEEEEEEcCCCHHHHHHH-HH
Confidence 5899999999996653221100 0 0011122222222222 35678899999999887776 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
..++.+|++|+|+|+.+
T Consensus 92 ~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 92 RSLRVLDGAVAVFDAVS 108 (691)
T ss_pred HHHHHhCeEEEEEeCCC
Confidence 88999999999999875
No 245
>CHL00071 tufA elongation factor Tu
Probab=98.95 E-value=2.1e-09 Score=67.41 Aligned_cols=78 Identities=19% Similarity=0.246 Sum_probs=49.1
Q ss_pred CCCCCCcHhHHHHHHhccCCC---C------------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---N------------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---~------------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||++.|...... . .......+.......+. .+..++.+.|+||+++|..... ..
T Consensus 18 ~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~-~~~~~~~~iDtPGh~~~~~~~~-~~ 95 (409)
T CHL00071 18 IGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYE-TENRHYAHVDCPGHADYVKNMI-TG 95 (409)
T ss_pred ECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEc-cCCeEEEEEECCChHHHHHHHH-HH
Confidence 589999999999766443110 0 00001111111122222 3456788999999988766535 67
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
+..+|++++|+|+..
T Consensus 96 ~~~~D~~ilVvda~~ 110 (409)
T CHL00071 96 AAQMDGAILVVSAAD 110 (409)
T ss_pred HHhCCEEEEEEECCC
Confidence 788999999999864
No 246
>PLN03126 Elongation factor Tu; Provisional
Probab=98.95 E-value=1.6e-09 Score=69.14 Aligned_cols=78 Identities=19% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCCCCCcHhHHHHHHhccCC-------C--------CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-------P--------NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||++.|..... . .+......+.......+. .+..++.++|+||+++|..... .-
T Consensus 87 iGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~-~~~~~i~liDtPGh~~f~~~~~-~g 164 (478)
T PLN03126 87 IGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYE-TENRHYAHVDCPGHADYVKNMI-TG 164 (478)
T ss_pred ECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEe-cCCcEEEEEECCCHHHHHHHHH-HH
Confidence 58999999999965542100 0 001111112111122222 3456789999999998866424 66
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
+..+|++++|+|+.+
T Consensus 165 ~~~aD~ailVVda~~ 179 (478)
T PLN03126 165 AAQMDGAILVVSGAD 179 (478)
T ss_pred HhhCCEEEEEEECCC
Confidence 778999999999874
No 247
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.94 E-value=3.6e-09 Score=64.34 Aligned_cols=77 Identities=22% Similarity=0.446 Sum_probs=48.3
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc--ccc---cchh--hhhc-cCCEEE
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD--FQD---FDAE--LIFA-RCGALI 73 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--~~~---~~~~--~~~~-~~~~~i 73 (81)
|.+|||||||++.+.... ++-.+.+..|.+.+..... ....++|+.||||--. ... +..+ ..++ -.++++
T Consensus 175 G~PNVGKSSlv~~lT~Ak-pEvA~YPFTTK~i~vGhfe-~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~Il 252 (346)
T COG1084 175 GYPNVGKSSLVRKLTTAK-PEVAPYPFTTKGIHVGHFE-RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVIL 252 (346)
T ss_pred cCCCCcHHHHHHHHhcCC-CccCCCCccccceeEeeee-cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEE
Confidence 899999999998885543 3333333344455665555 6667899999999432 111 1111 1112 257899
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
|+||.|.
T Consensus 253 F~~D~Se 259 (346)
T COG1084 253 FLFDPSE 259 (346)
T ss_pred EEEcCcc
Confidence 9999874
No 248
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.90 E-value=2.9e-09 Score=57.97 Aligned_cols=50 Identities=22% Similarity=0.329 Sum_probs=29.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|.+|||||||++.+.+............+.......+. . .+.+|||||-
T Consensus 89 ~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~i~DtpG~ 138 (141)
T cd01857 89 VGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLT-P---TITLCDCPGL 138 (141)
T ss_pred ECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeC-C---CEEEEECCCc
Confidence 599999999999888655332211111122222222221 2 5799999994
No 249
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.89 E-value=9.6e-09 Score=58.61 Aligned_cols=79 Identities=16% Similarity=0.135 Sum_probs=44.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCce-eeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cc--hhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNET-LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FD--AELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~--~~~~~~~~ 69 (81)
+|.+|||||||++.+.++...... .....|......... ....++.+.||||-..... +. ......+.
T Consensus 6 vG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~ 84 (196)
T cd01852 6 VGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAV-WDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGP 84 (196)
T ss_pred ECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEE-ECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCC
Confidence 699999999999888665322111 011111111111111 2345789999999654321 10 11234578
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
+++++|+|+..
T Consensus 85 ~~illVi~~~~ 95 (196)
T cd01852 85 HAFLLVVPLGR 95 (196)
T ss_pred EEEEEEEECCC
Confidence 99999998753
No 250
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.89 E-value=6.2e-09 Score=62.40 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCC--------------ceeEEEEEecCCCcccc----c
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANS--------------SFLQYQLWDCPGQMDFQ----D 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~D~~G~~~~~----~ 59 (81)
+|.++||||||.+.+.+.-... +..+..+..+.. .+.+. -..++++.|+||-..-. .
T Consensus 4 vG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v--~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~g 81 (274)
T cd01900 4 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIV--PVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG 81 (274)
T ss_pred eCCCCCcHHHHHHHHhCCCCccccccccchhceeeeE--EeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhH
Confidence 6999999999999886653321 111112222211 11111 11358999999944211 1
Q ss_pred cc--hhhhhccCCEEEEEEEcc
Q psy9524 60 FD--AELIFARCGALIFVIDTS 79 (81)
Q Consensus 60 ~~--~~~~~~~~~~~i~v~D~~ 79 (81)
+. .-..++++|+++.|+|..
T Consensus 82 lg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 82 LGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHhCCEEEEEEeCc
Confidence 21 113457899999999875
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.88 E-value=3.9e-09 Score=66.20 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=31.4
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..++.|+||||+++|..... .-+..+|++++|+|+..
T Consensus 77 ~~~~~~~liDtPGh~~f~~~~~-~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 77 TDKRKFIVADTPGHEQYTRNMA-TGASTADLAVLLVDARK 115 (406)
T ss_pred cCCeEEEEEeCCCHHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 3456889999999998865424 57889999999999864
No 252
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.87 E-value=8.6e-09 Score=65.79 Aligned_cols=39 Identities=21% Similarity=0.319 Sum_probs=31.0
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..++.|+||||++.|..... ..++.+|++++|+|+.+
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~-~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMA-TGASTCDLAILLIDARK 142 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 4456889999999998865324 45789999999999864
No 253
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.87 E-value=5.5e-09 Score=60.99 Aligned_cols=37 Identities=8% Similarity=0.038 Sum_probs=28.1
Q ss_pred eeEEEEEecCCCccccccchhhhh--ccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDFQDFDAELIF--ARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~~~~~~~~~~--~~~~~~i~v~D~~~ 80 (81)
...+.+.|+||+++|..... ..+ +.+|++++|+|+..
T Consensus 83 ~~~i~liDtpG~~~~~~~~~-~~~~~~~~D~~llVvda~~ 121 (224)
T cd04165 83 SKLVTFIDLAGHERYLKTTL-FGLTGYAPDYAMLVVAANA 121 (224)
T ss_pred CcEEEEEECCCcHHHHHHHH-HhhcccCCCEEEEEEECCC
Confidence 45789999999998866423 334 36899999999864
No 254
>PRK00049 elongation factor Tu; Reviewed
Probab=98.84 E-value=5.9e-09 Score=65.22 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=49.2
Q ss_pred CCCCCCcHhHHHHHHhccCCC---------------CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---------------NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|...... .+......|.......+. .+..++.+.||||+++|..... ..
T Consensus 18 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~-~~~~~i~~iDtPG~~~f~~~~~-~~ 95 (396)
T PRK00049 18 IGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYE-TEKRHYAHVDCPGHADYVKNMI-TG 95 (396)
T ss_pred EeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEc-CCCeEEEEEECCCHHHHHHHHH-hh
Confidence 588999999999666442110 000111222222222232 3456788999999988766434 66
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
...+|++++|+|+.+
T Consensus 96 ~~~aD~~llVVDa~~ 110 (396)
T PRK00049 96 AAQMDGAILVVSAAD 110 (396)
T ss_pred hccCCEEEEEEECCC
Confidence 789999999999865
No 255
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.84 E-value=3e-09 Score=66.82 Aligned_cols=77 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC--ceeeecceeeeEEEeecCCceeEEEEEecCCCcccc--cc---ch---hhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN--ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQ--DF---DA---ELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~--~~---~~---~~~~~~~~ 70 (81)
+|.+|||||||.++|.++-..- ..+.+..+..+....+ ....+.+.||+|-+... .+ .. ...+..||
T Consensus 9 VGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~---~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eAD 85 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEW---LGREFILIDTGGLDDGDEDELQELIREQALIAIEEAD 85 (444)
T ss_pred ECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEE---cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCC
Confidence 6999999999998886653321 1111111111222222 22448999999977433 11 01 14567899
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++|||+|...
T Consensus 86 vilfvVD~~~ 95 (444)
T COG1160 86 VILFVVDGRE 95 (444)
T ss_pred EEEEEEeCCC
Confidence 9999999764
No 256
>PTZ00258 GTP-binding protein; Provisional
Probab=98.84 E-value=9.2e-09 Score=64.23 Aligned_cols=77 Identities=12% Similarity=0.163 Sum_probs=44.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCc--------------eeEEEEEecCCCcccc----c
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSS--------------FLQYQLWDCPGQMDFQ----D 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------------~~~l~~~D~~G~~~~~----~ 59 (81)
+|.++||||||++.|.+..... +..+..+..+.. .+.+.+ ..++.+.|+||-..-. .
T Consensus 27 VG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v--~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~g 104 (390)
T PTZ00258 27 VGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARV--NVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEG 104 (390)
T ss_pred ECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEE--ecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhH
Confidence 6999999999999885543221 111112222221 111111 3468999999954211 1
Q ss_pred cc--hhhhhccCCEEEEEEEcc
Q psy9524 60 FD--AELIFARCGALIFVIDTS 79 (81)
Q Consensus 60 ~~--~~~~~~~~~~~i~v~D~~ 79 (81)
+. .-..++++|++++|+|..
T Consensus 105 Lg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 105 LGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHHHHHHHCCEEEEEEeCC
Confidence 11 114567899999999974
No 257
>KOG1191|consensus
Probab=98.84 E-value=6.3e-09 Score=66.05 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.|.+.-..--.+...-|-..-...+. -..+.+.+.||+|-++-.. .+-+...+.+|.+
T Consensus 274 vGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~-~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi 352 (531)
T KOG1191|consen 274 VGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVT-VNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVI 352 (531)
T ss_pred EcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEee-cCCeEEEEEeccccccccCChhHHHhHHHHHHHHhhcCEE
Confidence 699999999999988655332222222222222222233 6778899999999765111 1122567789999
Q ss_pred EEEEEc
Q psy9524 73 IFVIDT 78 (81)
Q Consensus 73 i~v~D~ 78 (81)
++|+|.
T Consensus 353 ~~vvda 358 (531)
T KOG1191|consen 353 LLVVDA 358 (531)
T ss_pred EEEecc
Confidence 999998
No 258
>PLN03127 Elongation factor Tu; Provisional
Probab=98.82 E-value=2.1e-08 Score=63.66 Aligned_cols=78 Identities=19% Similarity=0.227 Sum_probs=48.6
Q ss_pred CCCCCCcHhHHHHHHhccCC--------------CC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--------------PN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||+..|.+... .. +......|.......+. .+..++.+.||||+++|..... .-
T Consensus 67 iGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~-~~~~~i~~iDtPGh~~f~~~~~-~g 144 (447)
T PLN03127 67 IGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYE-TAKRHYAHVDCPGHADYVKNMI-TG 144 (447)
T ss_pred ECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEc-CCCeEEEEEECCCccchHHHHH-HH
Confidence 58899999999976642100 00 01111222223333333 4456789999999988755424 45
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
...+|++++|+|+.+
T Consensus 145 ~~~aD~allVVda~~ 159 (447)
T PLN03127 145 AAQMDGGILVVSAPD 159 (447)
T ss_pred HhhCCEEEEEEECCC
Confidence 567999999999864
No 259
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.82 E-value=1.2e-08 Score=64.73 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=32.4
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+...+.|.|+||+++|..... .....+|++++|+|+.+
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~-~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMI-TGTSQADVAILVVASTA 120 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHH-HhhhhcCEEEEEEEcCC
Confidence 5567899999999999876534 67889999999999874
No 260
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.81 E-value=1e-08 Score=65.08 Aligned_cols=39 Identities=18% Similarity=0.289 Sum_probs=33.5
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+...+.+.|+||+++|..... ..++.+|++|+|+|+.+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~-~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMI-TGTSQADCAVLIIDSTT 120 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHH-hhhhhccEEEEEEEccc
Confidence 4567899999999999987634 78899999999999875
No 261
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.81 E-value=1.2e-08 Score=58.42 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=46.8
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCC----------ccccccchhhhhcc-
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ----------MDFQDFDAELIFAR- 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~~~~- 68 (81)
+|.++||||||++.+.++-. ..-..++..|...+...+. ++ +.+.|.||- +.+..+.. .|++.
T Consensus 30 ~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~-~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~-~YL~~R 104 (200)
T COG0218 30 AGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD-DE---LRLVDLPGYGYAKVPKEVKEKWKKLIE-EYLEKR 104 (200)
T ss_pred EccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec-Cc---EEEEeCCCcccccCCHHHHHHHHHHHH-HHHhhc
Confidence 59999999999999977543 2222233444445554444 22 789999993 33344423 55553
Q ss_pred --CCEEEEEEEccC
Q psy9524 69 --CGALIFVIDTSM 80 (81)
Q Consensus 69 --~~~~i~v~D~~~ 80 (81)
-.++++++|+..
T Consensus 105 ~~L~~vvlliD~r~ 118 (200)
T COG0218 105 ANLKGVVLLIDARH 118 (200)
T ss_pred hhheEEEEEEECCC
Confidence 457777888753
No 262
>KOG0090|consensus
Probab=98.80 E-value=3.8e-09 Score=60.99 Aligned_cols=72 Identities=24% Similarity=0.301 Sum_probs=46.5
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhc---cCCEEEEEE
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFA---RCGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~---~~~~~i~v~ 76 (81)
+|++++|||+|. +.+.+...+..++ .++ +...+. ...-..++.|.||+.+.+.-.. .+++ .+-++|||+
T Consensus 44 ~Gl~dSGKT~LF~qL~~gs~~~TvtS-iep----n~a~~r-~gs~~~~LVD~PGH~rlR~kl~-e~~~~~~~akaiVFVV 116 (238)
T KOG0090|consen 44 VGLSDSGKTSLFTQLITGSHRGTVTS-IEP----NEATYR-LGSENVTLVDLPGHSRLRRKLL-EYLKHNYSAKAIVFVV 116 (238)
T ss_pred EecCCCCceeeeeehhcCCccCeeee-ecc----ceeeEe-ecCcceEEEeCCCcHHHHHHHH-HHccccccceeEEEEE
Confidence 599999999996 5554533333322 222 222222 1222279999999998887523 6666 789999999
Q ss_pred Ecc
Q psy9524 77 DTS 79 (81)
Q Consensus 77 D~~ 79 (81)
|..
T Consensus 117 DSa 119 (238)
T KOG0090|consen 117 DSA 119 (238)
T ss_pred ecc
Confidence 975
No 263
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.76 E-value=1.9e-08 Score=55.46 Aligned_cols=49 Identities=22% Similarity=0.197 Sum_probs=28.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG 53 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G 53 (81)
+|.+++||||+++.+.++...........+.... .. .....+.+|||||
T Consensus 107 ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~--~~~~~~~~~DtpG 155 (156)
T cd01859 107 VGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LV--KITSKIYLLDTPG 155 (156)
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EE--EcCCCEEEEECcC
Confidence 6999999999998886544322211112221111 11 1122689999998
No 264
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.76 E-value=1.8e-08 Score=55.15 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=39.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc----cccc-cchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----DFQD-FDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----~~~~-~~~~~~~~~~~~~i~v 75 (81)
||+.|+|||||++.|.+..... .+.+.. .+.=.+.||||.- .|.. + - ..-.+||.+++|
T Consensus 7 iG~~g~GKTTL~q~L~~~~~~~-----------~KTq~i---~~~~~~IDTPGEyiE~~~~y~aL-i-~ta~dad~V~ll 70 (143)
T PF10662_consen 7 IGPSGSGKTTLAQALNGEEIRY-----------KKTQAI---EYYDNTIDTPGEYIENPRFYHAL-I-VTAQDADVVLLL 70 (143)
T ss_pred ECCCCCCHHHHHHHHcCCCCCc-----------Ccccee---EecccEEECChhheeCHHHHHHH-H-HHHhhCCEEEEE
Confidence 6999999999999886642211 111000 0111458999932 1111 2 1 344589999999
Q ss_pred EEccCC
Q psy9524 76 IDTSMG 81 (81)
Q Consensus 76 ~D~~~~ 81 (81)
.|++++
T Consensus 71 ~dat~~ 76 (143)
T PF10662_consen 71 QDATEP 76 (143)
T ss_pred ecCCCC
Confidence 999864
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=66.18 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=30.3
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.|+||||+++|..... .....+|++++|+|+.+
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~-~~~~~aD~~llVvda~~ 139 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMV-TGASTADLAIILVDARK 139 (632)
T ss_pred cCCceEEEEECCChHHHHHHHH-HHHHhCCEEEEEEECCC
Confidence 3455788999999998755323 56789999999999864
No 266
>PRK00007 elongation factor G; Reviewed
Probab=98.74 E-value=2.5e-08 Score=66.17 Aligned_cols=78 Identities=17% Similarity=0.061 Sum_probs=48.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-c---e-------------eeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-E---T-------------LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~---~-------------~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.|....... . . .....+.......+. ....++.+.||||+..|..-..
T Consensus 16 iG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~-~~~~~~~liDTPG~~~f~~ev~- 93 (693)
T PRK00007 16 MAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCF-WKDHRINIIDTPGHVDFTIEVE- 93 (693)
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEE-ECCeEEEEEeCCCcHHHHHHHH-
Confidence 5899999999996663211100 0 0 011122222222222 3457899999999987766423
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
..++.+|++|+|+|...
T Consensus 94 ~al~~~D~~vlVvda~~ 110 (693)
T PRK00007 94 RSLRVLDGAVAVFDAVG 110 (693)
T ss_pred HHHHHcCEEEEEEECCC
Confidence 78889999999999764
No 267
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.73 E-value=8.8e-08 Score=59.43 Aligned_cols=77 Identities=12% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCC--------------ceeEEEEEecCCCcccc----c
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANS--------------SFLQYQLWDCPGQMDFQ----D 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~--------------~~~~l~~~D~~G~~~~~----~ 59 (81)
||.++||||||.+.+.+..... +..+..+..+... +.+. -..++.+.|+||-..-. .
T Consensus 8 VG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~--v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~g 85 (364)
T PRK09601 8 VGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVP--VPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEG 85 (364)
T ss_pred ECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEE--eccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHH
Confidence 6999999999998886644211 1111122222111 1111 11358999999954211 1
Q ss_pred cc--hhhhhccCCEEEEEEEcc
Q psy9524 60 FD--AELIFARCGALIFVIDTS 79 (81)
Q Consensus 60 ~~--~~~~~~~~~~~i~v~D~~ 79 (81)
+. .-..++++|++++|+|..
T Consensus 86 lg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 86 LGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHhCCEEEEEEeCC
Confidence 11 113467899999999985
No 268
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.72 E-value=5.9e-08 Score=56.68 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=45.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|.+++|||+|++.+..............+ ..... ....++.+.||+|.. ..+ . ...+.+|.+++++|.+.
T Consensus 45 vG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i~~-~~~~~i~~vDtPg~~--~~~-l-~~ak~aDvVllviDa~~ 115 (225)
T cd01882 45 VGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITVVT-GKKRRLTFIECPNDI--NAM-I-DIAKVADLVLLLIDASF 115 (225)
T ss_pred ECCCCCCHHHHHHHHHhhcccCcccccccc----EEEEe-cCCceEEEEeCCchH--HHH-H-HHHHhcCEEEEEEecCc
Confidence 589999999999777554332211111111 11122 355678899999864 333 3 45788999999999864
No 269
>KOG1707|consensus
Probab=98.70 E-value=3e-08 Score=64.07 Aligned_cols=77 Identities=10% Similarity=0.018 Sum_probs=51.9
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.|||||||+ ..+...+.+.- +...+.+....+.. ...+...+.|++..+.-+.. ...-++.|+++.++|+++
T Consensus 15 iGD~G~GKtSLImSL~~eef~~~V-P~rl~~i~IPadvt--Pe~vpt~ivD~ss~~~~~~~-l~~EirkA~vi~lvyavd 90 (625)
T KOG1707|consen 15 IGDEGVGKTSLIMSLLEEEFVDAV-PRRLPRILIPADVT--PENVPTSIVDTSSDSDDRLC-LRKEIRKADVICLVYAVD 90 (625)
T ss_pred ECCCCccHHHHHHHHHhhhccccc-cccCCccccCCccC--cCcCceEEEecccccchhHH-HHHHHhhcCEEEEEEecC
Confidence 699999999997 55555555543 22233322333222 34455899999876665554 337889999999999888
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
+|
T Consensus 91 ~~ 92 (625)
T KOG1707|consen 91 DE 92 (625)
T ss_pred Ch
Confidence 74
No 270
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.68 E-value=3.8e-08 Score=56.98 Aligned_cols=78 Identities=22% Similarity=0.171 Sum_probs=40.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCce-eeecceeeeEEEeecCCceeEEEEEecCCCccccc--------cc--hhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNET-LFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD--------FD--AELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~--------~~--~~~~~~~~ 69 (81)
+|..|+||||+++.+.+....... .....+......... .....+.++||||-..... +. ......+.
T Consensus 6 lG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~-~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g~ 84 (212)
T PF04548_consen 6 LGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGE-VDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPGP 84 (212)
T ss_dssp ECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEE-ETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-E
T ss_pred ECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeee-ecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCCC
Confidence 699999999999888665432211 111111112222222 3446789999999432111 10 01234568
Q ss_pred CEEEEEEEcc
Q psy9524 70 GALIFVIDTS 79 (81)
Q Consensus 70 ~~~i~v~D~~ 79 (81)
+++++|+.+.
T Consensus 85 ha~llVi~~~ 94 (212)
T PF04548_consen 85 HAFLLVIPLG 94 (212)
T ss_dssp SEEEEEEETT
T ss_pred eEEEEEEecC
Confidence 9999998764
No 271
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.67 E-value=2e-08 Score=62.43 Aligned_cols=74 Identities=26% Similarity=0.215 Sum_probs=36.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc----eeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhh-----ccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE----TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIF-----ARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~-----~~~~~ 71 (81)
.|++|+|||||+|.|.+--.+.+ +-.++.|........ .+.-.+.+||.||....... ...|+ ..-|.
T Consensus 41 ~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~--p~~pnv~lWDlPG~gt~~f~-~~~Yl~~~~~~~yD~ 117 (376)
T PF05049_consen 41 TGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH--PKFPNVTLWDLPGIGTPNFP-PEEYLKEVKFYRYDF 117 (376)
T ss_dssp EESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE---SS-TTEEEEEE--GGGSS---HHHHHHHTTGGG-SE
T ss_pred ECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC--CCCCCCeEEeCCCCCCCCCC-HHHHHHHccccccCE
Confidence 48999999999998854322221 111122222222222 23335899999996543332 33443 35688
Q ss_pred EEEEEE
Q psy9524 72 LIFVID 77 (81)
Q Consensus 72 ~i~v~D 77 (81)
+|++.+
T Consensus 118 fiii~s 123 (376)
T PF05049_consen 118 FIIISS 123 (376)
T ss_dssp EEEEES
T ss_pred EEEEeC
Confidence 887764
No 272
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.65 E-value=5.4e-08 Score=53.76 Aligned_cols=49 Identities=27% Similarity=0.309 Sum_probs=27.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG 53 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G 53 (81)
+|.+|||||||++.+.+.....-......|..... +.... .+.+.||||
T Consensus 108 ~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~~~--~~~liDtPG 156 (157)
T cd01858 108 IGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLMK--RIYLIDCPG 156 (157)
T ss_pred EeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEcCC--CEEEEECcC
Confidence 59999999999988865432221111111221111 11112 378999998
No 273
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.65 E-value=9.3e-08 Score=58.40 Aligned_cols=51 Identities=22% Similarity=0.275 Sum_probs=43.3
Q ss_pred cceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 28 EGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+|.++....+. ...+.+.+||++||+..+.. |..|+.+++++++|+|+++
T Consensus 146 ~~T~Gi~~~~f~-~~~~~~~~~DvgGq~~~R~k-W~~~f~~v~~iifvv~lsd 196 (317)
T cd00066 146 VKTTGIVETKFT-IKNLKFRMFDVGGQRSERKK-WIHCFEDVTAIIFVVALSE 196 (317)
T ss_pred cccCCeeEEEEE-ecceEEEEECCCCCcccchh-HHHHhCCCCEEEEEEEchh
Confidence 455666666665 56788999999999999988 8899999999999999986
No 274
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.64 E-value=1e-07 Score=58.76 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=44.5
Q ss_pred eecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 26 FLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+|.++....+. ...+.+.+||++||+..+.. |..|+.+++++|+|+|+++
T Consensus 167 ~r~~T~Gi~~~~f~-~~~~~~~~~DvgGqr~~R~k-W~~~f~~v~~IiFvvdlSd 219 (342)
T smart00275 167 SRVPTTGIQETAFI-VKKLFFRMFDVGGQRSERKK-WIHCFDNVTAIIFCVALSE 219 (342)
T ss_pred eeCCccceEEEEEE-ECCeEEEEEecCCchhhhhh-HHHHhCCCCEEEEEEECcc
Confidence 34566677766665 56788999999999999988 8899999999999999986
No 275
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.63 E-value=6.7e-08 Score=54.14 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=28.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|.++||||||++.+.+............|......... ..+.+|||||-
T Consensus 121 ~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 121 VGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS----PGIYLLDTPGI 170 (171)
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec----CCEEEEECCCC
Confidence 599999999999877654321111111112222222111 45799999994
No 276
>PTZ00416 elongation factor 2; Provisional
Probab=98.60 E-value=8.8e-08 Score=64.74 Aligned_cols=38 Identities=21% Similarity=0.299 Sum_probs=32.2
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+...+.+.||||+..|..... ..++.+|++|+|+|+.+
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~-~al~~~D~ailVvda~~ 127 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVT-AALRVTDGALVVVDCVE 127 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHH-HHHhcCCeEEEEEECCC
Confidence 357799999999998877644 78899999999999875
No 277
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.60 E-value=6.5e-08 Score=65.40 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=32.4
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....+++.||||+..|..-.. ..++.+|++|+|+|+.+
T Consensus 96 ~~~~inliDtPGh~dF~~e~~-~al~~~D~ailVvda~~ 133 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVT-AALRITDGALVVVDCIE 133 (843)
T ss_pred CceEEEEECCCCHHHHHHHHH-HHHhhcCEEEEEEECCC
Confidence 467889999999999977634 77899999999999875
No 278
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.59 E-value=1.1e-07 Score=65.26 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.6
Q ss_pred EEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 45 QYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 45 ~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+.||||||++.|..++. ..++.+|++++|+|+++
T Consensus 527 ~i~fiDTPGhe~F~~lr~-~g~~~aDivlLVVDa~~ 561 (1049)
T PRK14845 527 GLLFIDTPGHEAFTSLRK-RGGSLADLAVLVVDINE 561 (1049)
T ss_pred cEEEEECCCcHHHHHHHH-hhcccCCEEEEEEECcc
Confidence 389999999999988844 77889999999999875
No 279
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.59 E-value=1.1e-07 Score=53.64 Aligned_cols=49 Identities=22% Similarity=0.260 Sum_probs=28.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG 53 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G 53 (81)
+|.+|||||||++.+.+............|........ ...+.++||||
T Consensus 123 vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~----~~~~~l~DtPG 171 (172)
T cd04178 123 VGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL----DKKVKLLDSPG 171 (172)
T ss_pred EcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe----CCCEEEEECcC
Confidence 69999999999998866533221111222222222111 13578999998
No 280
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.59 E-value=5.9e-08 Score=55.10 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.|.+.
T Consensus 133 ~G~~nvGKStliN~l~~~ 150 (190)
T cd01855 133 VGATNVGKSTLINALLKK 150 (190)
T ss_pred EcCCCCCHHHHHHHHHHh
Confidence 699999999999888653
No 281
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.51 E-value=2.3e-07 Score=55.71 Aligned_cols=50 Identities=20% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|.+|||||||++.+.+............|.......+ . -.+.++||||-
T Consensus 124 vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~--~--~~~~l~DtPG~ 173 (276)
T TIGR03596 124 VGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKL--S--DGLELLDTPGI 173 (276)
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEe--C--CCEEEEECCCc
Confidence 59999999999988865432221111122222222211 1 24799999997
No 282
>KOG1489|consensus
Probab=98.51 E-value=4.7e-07 Score=55.30 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=46.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----cch--hhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----FDA--ELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~~~--~~~~~~~~~ 71 (81)
||-+++||||||+.+.+..+.- ...+..|.++ ...+. .-.++.+=|.||--+-.. +-. -.....|+.
T Consensus 202 VG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG--~v~yd--df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 202 VGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIG--TVNYD--DFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ecCCCCcHHHHHHHhhccCCcccccceeeeccccc--eeecc--ccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 6899999999999985543321 2333334444 22222 223388999999433222 212 134557899
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|++.
T Consensus 278 l~fVvD~s~ 286 (366)
T KOG1489|consen 278 LLFVVDLSG 286 (366)
T ss_pred EEEEEECCC
Confidence 999999985
No 283
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.51 E-value=1.5e-07 Score=62.93 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=32.9
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..++.+.||||+.+|..... ..++.+|++|+|+|+..
T Consensus 84 ~~~~~i~liDtPG~~df~~~~~-~~l~~~D~avlVvda~~ 122 (731)
T PRK07560 84 GKEYLINLIDTPGHVDFGGDVT-RAMRAVDGAIVVVDAVE 122 (731)
T ss_pred CCcEEEEEEcCCCccChHHHHH-HHHHhcCEEEEEEECCC
Confidence 4568899999999999877634 78999999999999764
No 284
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.50 E-value=3.3e-07 Score=55.29 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=30.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 55 (81)
+|.+|||||||++.+.++...........|........ + -.+.++||||-.
T Consensus 127 ~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~--~--~~~~l~DtPGi~ 177 (287)
T PRK09563 127 IGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKL--G--KGLELLDTPGIL 177 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEe--C--CcEEEEECCCcC
Confidence 69999999999998866533221111122322222111 1 247899999964
No 285
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.48 E-value=4.7e-07 Score=57.93 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=47.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhcc----CCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFAR----CGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~----~~~~i~v~ 76 (81)
+|+.++|||+|+..|.+...+......+.++.-.... ......++.+|-..|...+..+ .+..+.. --.+|+|+
T Consensus 31 lG~~~~GKttli~~L~~~e~~~~~~aLeYty~~v~d~-~~dd~~rl~vw~L~g~~~~~~L-Lk~~lt~~~l~~t~vvIvl 108 (472)
T PF05783_consen 31 LGDKGSGKTTLIARLQGIEDPKKGLALEYTYLDVKDE-DRDDLARLNVWELDGDPSHSDL-LKFALTPENLPNTLVVIVL 108 (472)
T ss_pred EeCCCCchHHHHHHhhccCCCCCCcccceEEEeeccC-cCCcCceeeEEEcCCCcchHhH-hcccCCcccccceEEEEEe
Confidence 6999999999997776554444433333332211111 1133467899999987666664 2122321 24788899
Q ss_pred EccCC
Q psy9524 77 DTSMG 81 (81)
Q Consensus 77 D~~~~ 81 (81)
|++.|
T Consensus 109 DlS~P 113 (472)
T PF05783_consen 109 DLSKP 113 (472)
T ss_pred cCCCh
Confidence 99875
No 286
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=3.4e-07 Score=57.37 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=31.0
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.....+.|.|+||++.|-.-.- .-..+||+.|+|+|+.+
T Consensus 82 t~k~~~tIiDaPGHrdFvknmI-tGasqAD~aVLVV~a~~ 120 (428)
T COG5256 82 TDKYNFTIIDAPGHRDFVKNMI-TGASQADVAVLVVDARD 120 (428)
T ss_pred cCCceEEEeeCCchHHHHHHhh-cchhhccEEEEEEECCC
Confidence 4556799999999988765313 56788999999999876
No 287
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.47 E-value=2.7e-07 Score=56.56 Aligned_cols=51 Identities=18% Similarity=0.206 Sum_probs=32.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 55 (81)
+|-++||||||++.|.++....-...+..|......... -.+.++||||--
T Consensus 138 vG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~----~~i~LlDtPGii 188 (322)
T COG1161 138 VGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD----DGIYLLDTPGII 188 (322)
T ss_pred EcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC----CCeEEecCCCcC
Confidence 689999999999988776553322222333322322222 238999999953
No 288
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.44 E-value=1.3e-06 Score=57.50 Aligned_cols=77 Identities=13% Similarity=0.154 Sum_probs=46.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc------cchhhhhc--cCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD------FDAELIFA--RCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~~--~~~~~ 72 (81)
+|++|||||||.+.+.+....--+ -...|.....-... .+..++++.|.||.-.... ..+ .|+. +.|++
T Consensus 9 vGNPNvGKTtlFN~LTG~~q~VgN-wpGvTVEkkeg~~~-~~~~~i~ivDLPG~YSL~~~S~DE~Var-~~ll~~~~D~i 85 (653)
T COG0370 9 VGNPNVGKTTLFNALTGANQKVGN-WPGVTVEKKEGKLK-YKGHEIEIVDLPGTYSLTAYSEDEKVAR-DFLLEGKPDLI 85 (653)
T ss_pred ecCCCccHHHHHHHHhccCceecC-CCCeeEEEEEEEEE-ecCceEEEEeCCCcCCCCCCCchHHHHH-HHHhcCCCCEE
Confidence 699999999999888554222100 00112212222222 4556689999999654433 223 3333 46999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|-|+|++|
T Consensus 86 vnVvDAtn 93 (653)
T COG0370 86 VNVVDATN 93 (653)
T ss_pred EEEcccch
Confidence 99999986
No 289
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.44 E-value=1.9e-06 Score=57.24 Aligned_cols=78 Identities=14% Similarity=0.185 Sum_probs=42.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-------cc--hhhhhc--cC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-------FD--AELIFA--RC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-------~~--~~~~~~--~~ 69 (81)
+|.+||||||+++.+.++...........+......... .....+.++||||-..... +. ...++. ..
T Consensus 124 VGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~-idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~gp 202 (763)
T TIGR00993 124 LGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGL-VQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKNPP 202 (763)
T ss_pred ECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEE-ECCceEEEEECCCCCccccchHHHHHHHHHHHHHHhcCCC
Confidence 699999999999888665321111100111111111111 2346789999999664321 10 002333 47
Q ss_pred CEEEEEEEcc
Q psy9524 70 GALIFVIDTS 79 (81)
Q Consensus 70 ~~~i~v~D~~ 79 (81)
|++|+|..+.
T Consensus 203 DVVLlV~RLd 212 (763)
T TIGR00993 203 DIVLYVDRLD 212 (763)
T ss_pred CEEEEEEeCC
Confidence 8999997653
No 290
>KOG0462|consensus
Probab=98.43 E-value=6.6e-07 Score=57.93 Aligned_cols=40 Identities=28% Similarity=0.478 Sum_probs=35.2
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+.+++.||||+-.|..... ..+..|+++|+|+|++.
T Consensus 121 ~~~~ylLNLIDTPGHvDFs~EVs-Rslaac~G~lLvVDA~q 160 (650)
T KOG0462|consen 121 DGQSYLLNLIDTPGHVDFSGEVS-RSLAACDGALLVVDASQ 160 (650)
T ss_pred cCCceEEEeecCCCcccccceeh-ehhhhcCceEEEEEcCc
Confidence 46779999999999999998755 78999999999999874
No 291
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.41 E-value=7.3e-07 Score=53.78 Aligned_cols=53 Identities=26% Similarity=0.282 Sum_probs=29.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCcee-------eecceeee---EEEeecCCceeEEEEEecCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETL-------FLEGTNKM---TKEDIANSSFLQYQLWDCPG 53 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~l~~~D~~G 53 (81)
+|.+|+|||||++.|.+........ ....+..+ ......++..+++.++||||
T Consensus 10 vG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 10 VGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred ECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 5999999999998886543322210 11111111 12222346778899999999
No 292
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.36 E-value=2.2e-06 Score=50.16 Aligned_cols=78 Identities=15% Similarity=0.047 Sum_probs=45.1
Q ss_pred CCCCCCcHhHHHHHHhcc--CCCCceeeecceeeeEEEeec--CCceeEEEEEecCCCccccccc-----hhhhhcc--C
Q psy9524 1 MGLRRSGKTSIQKVVFQK--MSPNETLFLEGTNKMTKEDIA--NSSFLQYQLWDCPGQMDFQDFD-----AELIFAR--C 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~D~~G~~~~~~~~-----~~~~~~~--~ 69 (81)
+|+.++|||+|++.+.+. -..........|.+....... ......+.+.||+|......-. .-..+.. +
T Consensus 13 ~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~lls 92 (224)
T cd01851 13 FGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLS 92 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHh
Confidence 699999999999888665 222111112334444443333 1245789999999965432210 1133334 6
Q ss_pred CEEEEEEEc
Q psy9524 70 GALIFVIDT 78 (81)
Q Consensus 70 ~~~i~v~D~ 78 (81)
+.+|+..+.
T Consensus 93 s~~i~n~~~ 101 (224)
T cd01851 93 SVLIYNSWE 101 (224)
T ss_pred CEEEEeccC
Confidence 777776654
No 293
>PRK12289 GTPase RsgA; Reviewed
Probab=98.36 E-value=8.8e-07 Score=54.93 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.|...
T Consensus 178 iG~SgVGKSSLIN~L~~~ 195 (352)
T PRK12289 178 AGPSGVGKSSLINRLIPD 195 (352)
T ss_pred EeCCCCCHHHHHHHHcCc
Confidence 699999999999888644
No 294
>PRK12288 GTPase RsgA; Reviewed
Probab=98.35 E-value=1.1e-06 Score=54.38 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.|.+.
T Consensus 211 vG~sgVGKSTLiN~Ll~~ 228 (347)
T PRK12288 211 VGQSGVGKSSLINALLPE 228 (347)
T ss_pred ECCCCCCHHHHHHHhccc
Confidence 699999999999888654
No 295
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.35 E-value=1.1e-06 Score=51.97 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.|.+.
T Consensus 126 ~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 126 AGQSGVGKSSLINALDPS 143 (245)
T ss_pred ECCCCCCHHHHHHHHhhh
Confidence 699999999999888654
No 296
>KOG0468|consensus
Probab=98.33 E-value=2.4e-06 Score=56.73 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=53.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeee------------c----ceeee-----EEEeecCCceeEEEEEecCCCccccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFL------------E----GTNKM-----TKEDIANSSFLQYQLWDCPGQMDFQD 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~------------~----~~~~~-----~~~~~~~~~~~~l~~~D~~G~~~~~~ 59 (81)
+|.-..|||+|+.+|..+..+.-.... + .++.. ..... .++.+.+++.||||+-+|..
T Consensus 134 ~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~-~~KS~l~nilDTPGHVnF~D 212 (971)
T KOG0468|consen 134 VGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDS-KGKSYLMNILDTPGHVNFSD 212 (971)
T ss_pred eeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecC-cCceeeeeeecCCCcccchH
Confidence 477789999999988655443210000 0 00111 11111 36778899999999999988
Q ss_pred cchhhhhccCCEEEEEEEccC
Q psy9524 60 FDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 60 ~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..- ..++.+|++++|+|+.+
T Consensus 213 E~t-a~l~~sDgvVlvvDv~E 232 (971)
T KOG0468|consen 213 ETT-ASLRLSDGVVLVVDVAE 232 (971)
T ss_pred HHH-HHhhhcceEEEEEEccc
Confidence 745 89999999999999864
No 297
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.33 E-value=2.4e-07 Score=51.75 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|||||||++.|...
T Consensus 41 ~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 41 LGQSGVGKSSLINALLPE 58 (161)
T ss_dssp ECSTTSSHHHHHHHHHTS
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 599999999999888655
No 298
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.32 E-value=1.1e-06 Score=48.42 Aligned_cols=49 Identities=20% Similarity=0.330 Sum_probs=27.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG 53 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G 53 (81)
+|.++||||||++.+.+............|........ . ..+.+.||||
T Consensus 106 ~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~--~--~~~~liDtPG 154 (155)
T cd01849 106 IGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKL--D--NKIKLLDTPG 154 (155)
T ss_pred EccCCCCHHHHHHHHHccccccccCCCCcccceEEEEe--c--CCEEEEECCC
Confidence 59999999999998866532211111111111111111 1 3489999998
No 299
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.2e-06 Score=55.08 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=50.9
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||.---||||||-.+.+ +....+.-.+..-++...........-.+.|.||||++.|..|+. .=..-+|++++|+|+.
T Consensus 11 mGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRa-RGa~vtDIaILVVa~d 89 (509)
T COG0532 11 MGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRA-RGASVTDIAILVVAAD 89 (509)
T ss_pred eCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHh-cCCccccEEEEEEEcc
Confidence 46667799999966632 222223222222222222222111446789999999999999944 6677899999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
|
T Consensus 90 D 90 (509)
T COG0532 90 D 90 (509)
T ss_pred C
Confidence 6
No 300
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.30 E-value=1.3e-06 Score=48.44 Aligned_cols=36 Identities=25% Similarity=0.459 Sum_probs=27.1
Q ss_pred eEEEEEecCCCcc----ccccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMD----FQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~----~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.|.|+||-.. ...+ ...|++.+|++|+|.+.+.
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~-~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEI-TEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHH-HHHHHSTTEEEEEEEETTS
T ss_pred cceEEEeCCccccchhhhHHH-HHHhhccCCEEEEEeccCc
Confidence 4468999999643 2234 4478899999999998875
No 301
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.29 E-value=1.1e-06 Score=46.09 Aligned_cols=15 Identities=20% Similarity=0.200 Sum_probs=12.8
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|+.|||||+|+..+
T Consensus 6 ~G~~gvGKt~l~~~~ 20 (124)
T smart00010 6 IGDSGVGKVGKSARF 20 (124)
T ss_pred ECCCChhHHHHHHHH
Confidence 699999999998544
No 302
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=9.6e-07 Score=53.34 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|||||||++.|.+...
T Consensus 167 ~G~sg~GKSTlin~l~~~~~ 186 (287)
T cd01854 167 VGQSGVGKSTLINALLPDLD 186 (287)
T ss_pred ECCCCCCHHHHHHHHhchhh
Confidence 69999999999998866543
No 303
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.25 E-value=3.4e-06 Score=54.03 Aligned_cols=40 Identities=20% Similarity=0.341 Sum_probs=35.0
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+..+++|.||||+..|....- ..++-.|++++++|+.+
T Consensus 64 ~~~~~~INIvDTPGHADFGGEVE-Rvl~MVDgvlLlVDA~E 103 (603)
T COG1217 64 NYNGTRINIVDTPGHADFGGEVE-RVLSMVDGVLLLVDASE 103 (603)
T ss_pred ecCCeEEEEecCCCcCCccchhh-hhhhhcceEEEEEEccc
Confidence 36779999999999999998744 78888999999999875
No 304
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.24 E-value=5e-06 Score=51.85 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=46.7
Q ss_pred CCCCCCcHhHHHHHHhccCC-CC--c-eeeecceeeeEEEeecCC--------------ceeEEEEEecCCCcccc----
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PN--E-TLFLEGTNKMTKEDIANS--------------SFLQYQLWDCPGQMDFQ---- 58 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~--~-~~~~~~~~~~~~~~~~~~--------------~~~~l~~~D~~G~~~~~---- 58 (81)
+|.+++|||||.+.+.+... +. + ..+..|..+.. .+++. ....+.+.|.||--.-.
T Consensus 8 vGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v--~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~ 85 (368)
T TIGR00092 8 VGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVV--NPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGE 85 (368)
T ss_pred ECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEE--EechhHHHHHHHHhCCcCcCCceEEEEeccccccchhccc
Confidence 69999999999998866544 22 1 11122332221 11211 12467899999954321
Q ss_pred cc--chhhhhccCCEEEEEEEccC
Q psy9524 59 DF--DAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 59 ~~--~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+ ..-...+++|+++.|+|..+
T Consensus 86 Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 86 GLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred CcchHHHHHHHhCCEEEEEEeCCC
Confidence 11 11256888999999999753
No 305
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=4.7e-06 Score=50.61 Aligned_cols=20 Identities=15% Similarity=0.332 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|.+|||||||++.|.+...
T Consensus 170 ~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 170 AGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ECCCCCCHHHHHHHHhCCcC
Confidence 69999999999998866544
No 306
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.21 E-value=2.9e-06 Score=51.53 Aligned_cols=17 Identities=18% Similarity=0.468 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|||||||++.|..
T Consensus 170 ~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 170 LGQSGVGKSTLINALLP 186 (301)
T ss_pred ECCCCCcHHHHHHhhCc
Confidence 59999999999988843
No 307
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.20 E-value=7.5e-07 Score=52.57 Aligned_cols=34 Identities=26% Similarity=0.508 Sum_probs=18.8
Q ss_pred EEEEEecCCCccccccchhhhh--------ccCCEEEEEEEcc
Q psy9524 45 QYQLWDCPGQMDFQDFDAELIF--------ARCGALIFVIDTS 79 (81)
Q Consensus 45 ~l~~~D~~G~~~~~~~~~~~~~--------~~~~~~i~v~D~~ 79 (81)
.+.++|||||.++... +.... ...-++++++|..
T Consensus 92 ~y~l~DtPGQiElf~~-~~~~~~i~~~L~~~~~~~~v~LvD~~ 133 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTH-SDSGRKIVERLQKNGRLVVVFLVDSS 133 (238)
T ss_dssp SEEEEE--SSHHHHHH-SHHHHHHHHTSSS----EEEEEE-GG
T ss_pred cEEEEeCCCCEEEEEe-chhHHHHHHHHhhhcceEEEEEEecc
Confidence 6899999999877665 31222 2345788888864
No 308
>KOG1707|consensus
Probab=98.19 E-value=6.7e-06 Score=53.59 Aligned_cols=77 Identities=18% Similarity=0.221 Sum_probs=50.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.++|||.+|+.+.++ +..+......+.+..+..... ++...+.+-|.+-. ....+..+. ..||.+.++||++
T Consensus 431 ~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke--~~cDv~~~~YDsS 506 (625)
T KOG1707|consen 431 VGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE--AACDVACLVYDSS 506 (625)
T ss_pred EcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc--ceeeeEEEecccC
Confidence 599999999999665454 333333333444445555555 66667788887765 333332223 7789999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
+|
T Consensus 507 ~p 508 (625)
T KOG1707|consen 507 NP 508 (625)
T ss_pred Cc
Confidence 75
No 309
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.15 E-value=3.4e-06 Score=52.45 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.+.+.
T Consensus 160 vG~~nvGKStliN~l~~~ 177 (360)
T TIGR03597 160 VGVTNVGKSSLINKLLKQ 177 (360)
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 699999999999888654
No 310
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=3e-06 Score=52.81 Aligned_cols=18 Identities=17% Similarity=0.527 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.|...
T Consensus 166 vG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 166 VGVTNVGKSTLINRIIKE 183 (365)
T ss_pred EcCCCCcHHHHHHHHHhh
Confidence 699999999999888644
No 311
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.13 E-value=1.2e-05 Score=51.69 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=34.8
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+.+++.||||+-.|.-... ..+..|.++++|+|++.
T Consensus 72 ~g~~Y~lnlIDTPGHVDFsYEVS-RSLAACEGalLvVDAsQ 111 (603)
T COG0481 72 DGETYVLNLIDTPGHVDFSYEVS-RSLAACEGALLVVDASQ 111 (603)
T ss_pred CCCEEEEEEcCCCCccceEEEeh-hhHhhCCCcEEEEECcc
Confidence 46889999999999998877644 78899999999999875
No 312
>KOG3905|consensus
Probab=98.11 E-value=6.1e-06 Score=51.00 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccC----CEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARC----GALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~----~~~i~v~ 76 (81)
+|+.++|||||+..|.+-.....-...+.-+ +....-..+...++.+|-..|......+ .+..+... -.+|++.
T Consensus 58 lGdn~sGKtsLi~klqg~e~~KkgsgLeY~y-l~V~de~RDd~tr~~VWiLDGd~~h~~L-Lk~al~ats~aetlvilta 135 (473)
T KOG3905|consen 58 LGDNGSGKTSLISKLQGSETVKKGSGLEYLY-LHVHDEDRDDLTRCNVWILDGDLYHKGL-LKFALPATSLAETLVILTA 135 (473)
T ss_pred EccCCCchhHHHHHhhcccccCCCCCcceEE-EecccccchhhhhcceEEecCchhhhhH-HhhcccccCccceEEEEEE
Confidence 5999999999998886544333322222211 1111111244567889999998766665 32333332 3677888
Q ss_pred EccCC
Q psy9524 77 DTSMG 81 (81)
Q Consensus 77 D~~~~ 81 (81)
|+++|
T Consensus 136 sms~P 140 (473)
T KOG3905|consen 136 SMSNP 140 (473)
T ss_pred ecCCc
Confidence 98875
No 313
>COG2262 HflX GTPases [General function prediction only]
Probab=98.08 E-value=7.7e-06 Score=51.37 Aligned_cols=75 Identities=17% Similarity=0.173 Sum_probs=44.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC--ce-eeecceeeeEEEeecCCceeEEEEEecCCCc---------cccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN--ET-LFLEGTNKMTKEDIANSSFLQYQLWDCPGQM---------DFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~~~~ 68 (81)
+|-.|+|||||+|.+.+..... .. .+..++ .....+ .....+-+-||-|-- .|+.- . .-...
T Consensus 198 vGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpt--tR~~~l--~~g~~vlLtDTVGFI~~LP~~LV~AFksT-L-EE~~~ 271 (411)
T COG2262 198 VGYTNAGKSTLFNALTGADVYVADQLFATLDPT--TRRIEL--GDGRKVLLTDTVGFIRDLPHPLVEAFKST-L-EEVKE 271 (411)
T ss_pred EeeccccHHHHHHHHhccCeeccccccccccCc--eeEEEe--CCCceEEEecCccCcccCChHHHHHHHHH-H-HHhhc
Confidence 4778999999999886432221 11 111222 122222 234567788999832 12221 2 33457
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|.++.|+|++||
T Consensus 272 aDlllhVVDaSdp 284 (411)
T COG2262 272 ADLLLHVVDASDP 284 (411)
T ss_pred CCEEEEEeecCCh
Confidence 9999999999986
No 314
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2e-05 Score=49.08 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=46.7
Q ss_pred CCCCCCcHhHHHHHHhccCCC--C-ceeeecceeeeEEEe----------ec---CCceeEEEEEecCCCcc----cccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--N-ETLFLEGTNKMTKED----------IA---NSSFLQYQLWDCPGQMD----FQDF 60 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~-~~~~~~~~~~~~~~~----------~~---~~~~~~l~~~D~~G~~~----~~~~ 60 (81)
+|.++||||||-+.+...--+ + +-.+++|-.+..... .. .-....+++.|.+|--. -+.+
T Consensus 8 VGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGL 87 (372)
T COG0012 8 VGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGL 87 (372)
T ss_pred ecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCc
Confidence 699999999999888544322 1 222333333321111 00 01235689999998432 2223
Q ss_pred c--hhhhhccCCEEEEEEEccC
Q psy9524 61 D--AELIFARCGALIFVIDTSM 80 (81)
Q Consensus 61 ~--~~~~~~~~~~~i~v~D~~~ 80 (81)
- .-.-+|.+|+++-|+|++.
T Consensus 88 GNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 88 GNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred chHHHHhhhhcCeEEEEEEecC
Confidence 1 1155778999999999874
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.06 E-value=1.5e-05 Score=53.35 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=33.0
Q ss_pred eeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+.+++.||||+-.|..... ..++-+|++|+|+|+..
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~-rslrvlDgavvVvdave 111 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVE-RSLRVLDGAVVVVDAVE 111 (697)
T ss_pred ceEEEEeCCCCccccHHHHH-HHHHhhcceEEEEECCC
Confidence 58999999999999998755 89999999999999864
No 316
>KOG1486|consensus
Probab=98.05 E-value=1.7e-05 Score=47.60 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=44.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCc------c--ccccchhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM------D--FQDFDAELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~------~--~~~~~~~~~~~~~~~ 71 (81)
+|-++||||+|+..+...-.+. ....+.-+ .-...+ ......+++.|.||-- + -+.. - ...+.||.
T Consensus 68 IGfPSVGKStlLs~iT~T~SeaA~yeFTTLt--cIpGvi-~y~ga~IQllDLPGIieGAsqgkGRGRQv-i-avArtaDl 142 (364)
T KOG1486|consen 68 IGFPSVGKSTLLSKITSTHSEAASYEFTTLT--CIPGVI-HYNGANIQLLDLPGIIEGASQGKGRGRQV-I-AVARTADL 142 (364)
T ss_pred ecCCCccHHHHHHHhhcchhhhhceeeeEEE--eecceE-EecCceEEEecCcccccccccCCCCCceE-E-EEeecccE
Confidence 5889999999997664332221 11111111 111112 2556678999999832 2 2222 2 46678999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
++.|.|.+-
T Consensus 143 ilMvLDatk 151 (364)
T KOG1486|consen 143 ILMVLDATK 151 (364)
T ss_pred EEEEecCCc
Confidence 999999863
No 317
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.03 E-value=1.7e-05 Score=48.99 Aligned_cols=76 Identities=20% Similarity=0.186 Sum_probs=46.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCceeEEEEEecCCCcccc----ccch--hhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQ----DFDA--ELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----~~~~--~~~~~~~~~ 71 (81)
||-+++|||||++.+.+--+.- +..+..|..++... ...-.+.+=|.||--.-. .+-. -..+..|..
T Consensus 165 VG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~----~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 165 VGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV----DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe----cCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 6899999999998885443332 23333344443332 333457888999843211 1211 134557899
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
++.|+|++.
T Consensus 241 L~hviD~s~ 249 (369)
T COG0536 241 LLHVIDLSP 249 (369)
T ss_pred eEEEEecCc
Confidence 999999874
No 318
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=8.5e-06 Score=53.65 Aligned_cols=70 Identities=13% Similarity=0.339 Sum_probs=46.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|+|||+|++.|...+...-...+.. ..+.+. ++.-++.+..|+. ....+ - ...+-+|.+++.+|..
T Consensus 75 vGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiTvvs-gK~RRiTflEcp~--Dl~~m-i-DvaKIaDLVlLlIdgn 144 (1077)
T COG5192 75 VGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PITVVS-GKTRRITFLECPS--DLHQM-I-DVAKIADLVLLLIDGN 144 (1077)
T ss_pred ecCCCCChhHHHHHHHHHHHHhhhhccCC----ceEEee-cceeEEEEEeChH--HHHHH-H-hHHHhhheeEEEeccc
Confidence 69999999999987766655442222221 222222 7778899999993 34444 2 4566789999998853
No 319
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.02 E-value=6.5e-06 Score=52.75 Aligned_cols=36 Identities=19% Similarity=0.163 Sum_probs=29.5
Q ss_pred eEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.+.|+||++.|-.... .-...+|++++|+|+.+
T Consensus 117 ~~i~~IDtPGH~~fi~~m~-~g~~~~D~alLVVda~~ 152 (460)
T PTZ00327 117 RHVSFVDCPGHDILMATML-NGAAVMDAALLLIAANE 152 (460)
T ss_pred ceEeeeeCCCHHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 3689999999998865435 67788999999999875
No 320
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=6.1e-06 Score=52.48 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=34.1
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+.+...++|.||||++.|..=+. .-+..+|++|.|+|+.
T Consensus 77 ~Y~~~~iNLLDTPGHeDFSEDTY-RtLtAvDsAvMVIDaA 115 (528)
T COG4108 77 DYADCLVNLLDTPGHEDFSEDTY-RTLTAVDSAVMVIDAA 115 (528)
T ss_pred ccCCeEEeccCCCCccccchhHH-HHHHhhheeeEEEecc
Confidence 47888999999999999988756 6788899999999975
No 321
>KOG1424|consensus
Probab=97.95 E-value=8.5e-06 Score=52.52 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 55 (81)
||=+||||||+|+.|.+...-.-..++.-|..+....+. -.+.+.||||--
T Consensus 320 VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls----~~v~LCDCPGLV 370 (562)
T KOG1424|consen 320 VGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS----PSVCLCDCPGLV 370 (562)
T ss_pred ecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC----CCceecCCCCcc
Confidence 688999999999999888776666666666655554443 236899999954
No 322
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.94 E-value=6.8e-06 Score=48.68 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
||+||||||||+|.+.+-..+.
T Consensus 35 lGpSGcGKSTLLriiAGL~~p~ 56 (248)
T COG1116 35 LGPSGCGKSTLLRLIAGLEKPT 56 (248)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999997765554
No 323
>KOG1491|consensus
Probab=97.93 E-value=4.8e-05 Score=47.16 Aligned_cols=80 Identities=10% Similarity=0.086 Sum_probs=45.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC-C--ceeeecceee---e---------EEEeecCCceeEEEEEecCCCcccc----ccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-N--ETLFLEGTNK---M---------TKEDIANSSFLQYQLWDCPGQMDFQ----DFD 61 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~--~~~~~~~~~~---~---------~~~~~~~~~~~~l~~~D~~G~~~~~----~~~ 61 (81)
||.++|||||+.+.|.+..-. . +..++.|... . ............++++|++|--+-. .+-
T Consensus 26 VGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLG 105 (391)
T KOG1491|consen 26 VGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLG 105 (391)
T ss_pred eeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCch
Confidence 699999999999988544222 1 1112222211 0 0000011234678999999844322 221
Q ss_pred --hhhhhccCCEEEEEEEccC
Q psy9524 62 --AELIFARCGALIFVIDTSM 80 (81)
Q Consensus 62 --~~~~~~~~~~~i~v~D~~~ 80 (81)
.-.-+|.+|+++=|+++.+
T Consensus 106 N~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 106 NKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred HHHHHhhhhccceeEEEEecC
Confidence 1156778999999987754
No 324
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.91 E-value=1.2e-05 Score=47.14 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
||++|||||||||.+.
T Consensus 39 IGPSGcGKST~LR~lN 54 (253)
T COG1117 39 IGPSGCGKSTLLRCLN 54 (253)
T ss_pred ECCCCcCHHHHHHHHH
Confidence 6999999999999883
No 325
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.87 E-value=9.7e-06 Score=50.34 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+|||||||+||.+.+=..+.
T Consensus 37 LGPSGcGKTTlLR~IAGfe~p~ 58 (352)
T COG3842 37 LGPSGCGKTTLLRMIAGFEQPS 58 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999996654443
No 326
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.85 E-value=1.2e-05 Score=47.06 Aligned_cols=18 Identities=22% Similarity=0.374 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|+||+|||||||++..-
T Consensus 34 iGpSGSGKSTlLRclN~L 51 (240)
T COG1126 34 IGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred ECCCCCCHHHHHHHHHCC
Confidence 699999999999999544
No 327
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.84 E-value=1.2e-05 Score=49.71 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||||.+.+-..+.
T Consensus 35 lGPSGcGKSTlLr~IAGLe~~~ 56 (338)
T COG3839 35 LGPSGCGKSTLLRMIAGLEEPT 56 (338)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999997665543
No 328
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.84 E-value=9.4e-05 Score=43.89 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|+.|+||||+++.+.+.
T Consensus 32 vG~~~~GKSt~l~~i~g~ 49 (240)
T smart00053 32 VGGQSAGKSSVLENFVGR 49 (240)
T ss_pred EcCCCccHHHHHHHHhCC
Confidence 699999999999888654
No 329
>KOG0705|consensus
Probab=97.83 E-value=1.8e-05 Score=51.71 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=52.9
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||..++|||+|+ +++.+.+...+.+.-.. +.++.+.+.....+-+.|.+|.. ..+|....|++|+||.+.
T Consensus 36 vg~~~sgktalvhr~ltgty~~~e~~e~~~---~kkE~vv~gqs~lLlirdeg~~~------~aQft~wvdavIfvf~~~ 106 (749)
T KOG0705|consen 36 VGTSQSGKTALVHRYLTGTYTQDESPEGGR---FKKEVVVDGQSHLLLIRDEGGHP------DAQFCQWVDAVVFVFSVE 106 (749)
T ss_pred eecccCCceeeeeeeccceeccccCCcCcc---ceeeEEeeccceEeeeecccCCc------hhhhhhhccceEEEEEec
Confidence 689999999999 77777766665433222 56666666888889999998833 336777789999999775
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
|
T Consensus 107 d 107 (749)
T KOG0705|consen 107 D 107 (749)
T ss_pred c
Confidence 5
No 330
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.82 E-value=5.2e-05 Score=47.20 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=32.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-------ceeeecceee---eEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-------ETLFLEGTNK---MTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|++|.||||+++.|.++.... ......++.. .......++-.++|.+.||||-
T Consensus 29 ~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGf 92 (373)
T COG5019 29 VGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGF 92 (373)
T ss_pred ecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCc
Confidence 6999999999998775551111 1111122211 2222333566678999999993
No 331
>KOG0458|consensus
Probab=97.81 E-value=8.1e-05 Score=48.70 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=30.2
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.....+.|.|.||+..|-.-.- .-...+|..++|+|++-
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi-~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMI-SGASQADVAVLVVDAST 290 (603)
T ss_pred cCceeEEEecCCCccccchhhh-ccccccceEEEEEECCc
Confidence 5667789999999887765323 45667899999999873
No 332
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.80 E-value=1.6e-05 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+.|||||||++.+.+-..+.
T Consensus 34 iGpNG~GKSTLLk~l~g~l~p~ 55 (258)
T COG1120 34 LGPNGSGKSTLLKCLAGLLKPK 55 (258)
T ss_pred ECCCCCCHHHHHHHHhccCCCC
Confidence 6999999999999997766653
No 333
>PRK13768 GTPase; Provisional
Probab=97.77 E-value=2e-05 Score=46.88 Aligned_cols=34 Identities=32% Similarity=0.609 Sum_probs=23.6
Q ss_pred EEEEEecCCCcccc---ccchhhhhcc-----CCEEEEEEEcc
Q psy9524 45 QYQLWDCPGQMDFQ---DFDAELIFAR-----CGALIFVIDTS 79 (81)
Q Consensus 45 ~l~~~D~~G~~~~~---~~~~~~~~~~-----~~~~i~v~D~~ 79 (81)
.+.+||+||+.+.. .. +..+++. ++++++++|++
T Consensus 98 ~~~~~d~~g~~~~~~~~~~-~~~~~~~l~~~~~~~ii~liD~~ 139 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRES-GRKLVERLSGSSKSVVVFLIDAV 139 (253)
T ss_pred CEEEEeCCcHHHHHhhhHH-HHHHHHHHHhcCCeEEEEEechH
Confidence 57899999987643 22 2233333 78999999985
No 334
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.77 E-value=0.00013 Score=39.73 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=17.1
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
.|+.|+|||+|++.+...+..
T Consensus 28 ~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 28 KGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EcCCCCCHHHHHHHHHHHcCC
Confidence 489999999999888666543
No 335
>KOG1145|consensus
Probab=97.75 E-value=6.2e-05 Score=49.27 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=49.7
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||.=.=||||||..+.+... ..+.-.+..-++.....++ +.-.+.|.||||+..|..| +..=..-+|.+++|+...
T Consensus 159 MGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p--~G~~iTFLDTPGHaAF~aM-RaRGA~vtDIvVLVVAad 235 (683)
T KOG1145|consen 159 MGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP--SGKSITFLDTPGHAAFSAM-RARGANVTDIVVLVVAAD 235 (683)
T ss_pred eecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC--CCCEEEEecCCcHHHHHHH-HhccCccccEEEEEEEcc
Confidence 35555699999977743322 1222222222333333344 3366789999999999999 446677789999999776
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
|
T Consensus 236 D 236 (683)
T KOG1145|consen 236 D 236 (683)
T ss_pred C
Confidence 5
No 336
>KOG2655|consensus
Probab=97.75 E-value=8.8e-05 Score=46.28 Aligned_cols=54 Identities=24% Similarity=0.268 Sum_probs=31.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCC-----ceeeecce--ee-eEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPN-----ETLFLEGT--NK-MTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~-----~~~~~~~~--~~-~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|++|.|||||++.|+.. +..+ .......+ +. .......++-.++|.+.||||-
T Consensus 27 vG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGf 89 (366)
T KOG2655|consen 27 VGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGF 89 (366)
T ss_pred ecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCC
Confidence 599999999999776444 2211 00000011 11 2233333566678899999993
No 337
>KOG1954|consensus
Probab=97.74 E-value=9.5e-05 Score=46.62 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+-+.||||++++|..+..+.
T Consensus 64 ~GqyStGKTtfi~yLle~dypg 85 (532)
T KOG1954|consen 64 VGQYSTGKTTFIRYLLEQDYPG 85 (532)
T ss_pred EeccccchhHHHHHHHhCCCCc
Confidence 5888999999998887765554
No 338
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.73 E-value=5.9e-05 Score=42.47 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=13.4
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|++|+|||||++.+....
T Consensus 6 G~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 6 GPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp S-TTSSHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHh
Confidence 899999999996664444
No 339
>KOG0082|consensus
Probab=97.71 E-value=6.6e-05 Score=46.71 Aligned_cols=51 Identities=20% Similarity=0.238 Sum_probs=42.4
Q ss_pred cceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 28 EGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+|.++...... -+...+.++|++||+.-+.- |-.++.+++++|+|+++++
T Consensus 180 ~~T~GI~e~~F~-~k~~~f~~~DvGGQRseRrK-WihcFe~v~aviF~vslSe 230 (354)
T KOG0082|consen 180 VPTTGIVEVEFT-IKGLKFRMFDVGGQRSERKK-WIHCFEDVTAVIFCVSLSE 230 (354)
T ss_pred cCcCCeeEEEEE-eCCCceEEEeCCCcHHHhhh-HHHhhcCCCEEEEEEehhh
Confidence 455666666666 66788999999999988877 7799999999999999875
No 340
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.71 E-value=0.00012 Score=46.01 Aligned_cols=51 Identities=27% Similarity=0.249 Sum_probs=38.5
Q ss_pred ceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 29 GTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.|.++....+.-.....+.++|++||+.-+.- |-.++.+++++|+|+++++
T Consensus 221 ~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkK-W~~~F~~v~~vif~vsls~ 271 (389)
T PF00503_consen 221 KTTGITEIDFNFSGSRKFRLIDVGGQRSERKK-WIHCFEDVTAVIFVVSLSE 271 (389)
T ss_dssp --SSEEEEEEEE-TTEEEEEEEETSSGGGGGG-GGGGGTTESEEEEEEEGGG
T ss_pred CCCCeeEEEEEeecccccceecCCCCchhhhh-HHHHhccccEEEEeecccc
Confidence 34444544444117788999999999887777 8799999999999999874
No 341
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.68 E-value=3.3e-05 Score=45.40 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++||||||||+.+..-..+
T Consensus 37 ~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 37 VGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred ECCCCCCHHHHHHHHhcccCC
Confidence 699999999999988554444
No 342
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.65 E-value=3.7e-05 Score=44.46 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~nGsGKSTLl~~i~Gl~~~~ 57 (218)
T cd03255 36 VGPSGSGKSTLLNILGGLDRPT 57 (218)
T ss_pred EcCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998776554
No 343
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.64 E-value=5e-05 Score=44.22 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 37 lGpSGcGKTTLLnl~AGf~~P~ 58 (259)
T COG4525 37 LGPSGCGKTTLLNLIAGFVTPS 58 (259)
T ss_pred EcCCCccHHHHHHHHhcCcCcc
Confidence 6999999999999997766654
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.62 E-value=4.1e-05 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~p~ 52 (177)
T cd03222 31 VGPNGTGKTTAVKILAGQLIPN 52 (177)
T ss_pred ECCCCChHHHHHHHHHcCCCCC
Confidence 5999999999999998876654
No 345
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.62 E-value=4.3e-05 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~p~ 53 (205)
T cd03226 32 TGKNGAGKTTLAKILAGLIKES 53 (205)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776554
No 346
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=4.4e-05 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=18.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
||++|+|||||+|.+.+-..+.
T Consensus 36 IG~SGaGKSTLLR~lngl~d~t 57 (258)
T COG3638 36 IGPSGAGKSTLLRSLNGLVDPT 57 (258)
T ss_pred ECCCCCcHHHHHHHHhcccCCC
Confidence 6999999999999997654444
No 347
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.61 E-value=4.6e-05 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~ 54 (211)
T cd03225 33 VGPNGSGKSTLLRLLNGLLGPT 54 (211)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998765543
No 348
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.61 E-value=4.4e-05 Score=44.14 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~~~ 56 (216)
T TIGR00960 35 VGHSGAGKSTFLKLILGIEKPT 56 (216)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 349
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.61 E-value=4.8e-05 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~p~ 53 (235)
T cd03261 32 IGPSGSGKSTLLRLIVGLLRPD 53 (235)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999998776554
No 350
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.60 E-value=5e-05 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 24 ~G~nGsGKSTLl~~i~G~~~~~ 45 (190)
T TIGR01166 24 LGANGAGKSTLLLHLNGLLRPQ 45 (190)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999997766553
No 351
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.59 E-value=5.4e-05 Score=43.57 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (210)
T cd03269 32 LGPNGAGKTTTIRMILGIILPD 53 (210)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776544
No 352
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.58 E-value=0.00013 Score=39.18 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=17.9
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceee
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNK 32 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~ 32 (81)
|+-|+|||+|++.+...+.... ....||+.
T Consensus 22 GdLGaGKTtf~r~l~~~lg~~~-~V~SPTF~ 51 (123)
T PF02367_consen 22 GDLGAGKTTFVRGLARALGIDE-EVTSPTFS 51 (123)
T ss_dssp ESTTSSHHHHHHHHHHHTT--S-----TTTT
T ss_pred CCCCCCHHHHHHHHHHHcCCCC-CcCCCCeE
Confidence 7889999999988866653332 33445543
No 353
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=5.7e-05 Score=43.50 Aligned_cols=22 Identities=23% Similarity=0.525 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~~~ 52 (211)
T cd03264 31 LGPNGAGKTTLMRILATLTPPS 52 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998765543
No 354
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.57 E-value=5.9e-05 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.438 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (213)
T cd03262 32 IGPSGSGKSTLLRCINLLEEPD 53 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 355
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.57 E-value=5.7e-05 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 19 ~G~NGsGKSTLlk~i~Gl~~~~ 40 (213)
T PRK15177 19 LAAPGSGKTTLTRLLCGLDAPD 40 (213)
T ss_pred ECCCCCCHHHHHHHHhCCccCC
Confidence 5999999999999998765554
No 356
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.57 E-value=5.4e-05 Score=42.97 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||||++.+.....
T Consensus 8 ~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 8 MGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 59999999999999866543
No 357
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.57 E-value=5.7e-05 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.602 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~ 54 (214)
T cd03292 33 VGPSGAGKSTLLKLIYKEELPT 54 (214)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776554
No 358
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.57 E-value=6.4e-05 Score=42.94 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=19.4
Q ss_pred CCCCCcHhHHHHHHhccCCCCc
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~ 23 (81)
|++|+|||||++.|..++.+..
T Consensus 44 G~SG~GKStllr~LYaNY~~d~ 65 (235)
T COG4778 44 GPSGSGKSTLLRSLYANYLPDE 65 (235)
T ss_pred CCCCCcHHHHHHHHHhccCCCC
Confidence 8999999999999988877754
No 359
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=5.8e-05 Score=43.78 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~ 53 (220)
T cd03265 32 LGPNGAGKTTTIKMLTTLLKPT 53 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 360
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.56 E-value=5.8e-05 Score=43.84 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~~~ 58 (228)
T cd03257 37 VGESGSGKSTLARAILGLLKPT 58 (228)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 361
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.56 E-value=5.8e-05 Score=44.32 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~ 55 (243)
T TIGR02315 34 IGPSGAGKSTLLRCINRLVEPS 55 (243)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999997766543
No 362
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.56 E-value=6.2e-05 Score=43.13 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~~~ 51 (206)
T TIGR03608 30 IGESGSGKSTLLNIIGLLEKFD 51 (206)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876554
No 363
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.56 E-value=6.1e-05 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 ~G~nGsGKSTLl~~i~G~~~~~ 58 (221)
T TIGR02211 37 VGSSGSGKSTLLHLLGGLDNPT 58 (221)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 364
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=5.9e-05 Score=43.75 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~nGsGKSTLl~~l~Gl~~~~ 57 (220)
T cd03293 36 VGPSGCGKSTLLRIIAGLERPT 57 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 365
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=6.4e-05 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~p~ 53 (213)
T cd03259 32 LGPSGCGKTTLLRLIAGLERPD 53 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 366
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.55 E-value=6.4e-05 Score=43.86 Aligned_cols=22 Identities=23% Similarity=0.444 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~p~ 53 (232)
T cd03218 32 LGPNGAGKTTTFYMIVGLVKPD 53 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 367
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.55 E-value=6.2e-05 Score=43.61 Aligned_cols=22 Identities=27% Similarity=0.584 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~ 53 (222)
T cd03224 32 LGRNGAGKTTLLKTIMGLLPPR 53 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999997765543
No 368
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.55 E-value=6.3e-05 Score=43.34 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (213)
T cd03301 32 LGPSGCGKTTTLRMIAGLEEPT 53 (213)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 369
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.54 E-value=6.3e-05 Score=43.39 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~nGsGKSTLl~~l~G~~~p~ 52 (213)
T cd03235 31 VGPNGAGKSTLLKAILGLLKPT 52 (213)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999997766553
No 370
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.54 E-value=2.3e-05 Score=42.13 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=18.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||+|++.+.+...+
T Consensus 17 ~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 17 VGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EESTTSSHHHHHHHHTTSSHE
T ss_pred EccCCCccccceeeecccccc
Confidence 589999999999999776554
No 371
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=6.9e-05 Score=42.24 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (178)
T cd03229 32 LGPSGSGKSTLLRCIAGLEEPD 53 (178)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 372
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.54 E-value=6.6e-05 Score=43.29 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~i~Gl~~~~ 55 (214)
T TIGR02673 34 TGPSGAGKTTLLKLLYGALTPS 55 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999997765543
No 373
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.53 E-value=7.1e-05 Score=43.35 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~ 55 (220)
T cd03263 34 LGHNGAGKTTTLKMLTGELRPT 55 (220)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 374
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.52 E-value=6.6e-05 Score=43.35 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~ 23 (81)
+|+||+|||||++.+.....+..
T Consensus 34 ~GpSGAGKSTllkLi~~~e~pt~ 56 (223)
T COG2884 34 TGPSGAGKSTLLKLIYGEERPTR 56 (223)
T ss_pred ECCCCCCHHHHHHHHHhhhcCCC
Confidence 59999999999999977665543
No 375
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.52 E-value=7e-05 Score=43.89 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~ 54 (236)
T TIGR03864 33 LGPNGAGKSTLFSLLTRLYVAQ 54 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998776554
No 376
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.52 E-value=7.6e-05 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~i~G~~~~~ 53 (163)
T cd03216 32 LGENGAGKSTLMKILSGLYKPD 53 (163)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 377
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.51 E-value=6.9e-05 Score=43.81 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~ 53 (236)
T cd03219 32 IGPNGAGKTTLFNLISGFLRPT 53 (236)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999998766543
No 378
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.51 E-value=7.6e-05 Score=43.66 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~~~ 62 (233)
T PRK11629 41 VGSSGSGKSTLLHLLGGLDTPT 62 (233)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776543
No 379
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=7.6e-05 Score=43.61 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 ~G~nGsGKSTLl~~l~G~~~~~ 58 (233)
T cd03258 37 IGRSGAGKSTLIRCINGLERPT 58 (233)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 380
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.50 E-value=8.2e-05 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.519 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (182)
T cd03215 32 AGLVGNGQTELAEALFGLRPPA 53 (182)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 381
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.50 E-value=8.4e-05 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 30 ~G~nGsGKSTLl~~l~gl~~~~ 51 (211)
T cd03298 30 VGPSGSGKSTLLNLIAGFETPQ 51 (211)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 382
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.50 E-value=7.8e-05 Score=44.33 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~p~ 54 (255)
T PRK11248 33 LGPSGCGKTTLLNLIAGFVPYQ 54 (255)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 383
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.2e-05 Score=43.68 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~ 55 (239)
T cd03296 34 LGPSGSGKTTLLRLIAGLERPD 55 (239)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 384
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.49 E-value=8.5e-05 Score=42.71 Aligned_cols=22 Identities=27% Similarity=0.613 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~Gl~~~~ 53 (208)
T cd03268 32 LGPNGAGKTTTMKIILGLIKPD 53 (208)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999997765543
No 385
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.49 E-value=8.3e-05 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+..++.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~ 58 (218)
T cd03266 37 LGPNGAGKTTTLRMLAGLLEPD 58 (218)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998776554
No 386
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.49 E-value=8.8e-05 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (195)
T PRK13541 32 KGANGCGKSSLLRMIAGIMQPS 53 (195)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876554
No 387
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.4e-05 Score=42.93 Aligned_cols=22 Identities=18% Similarity=0.444 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 29 ~G~nGsGKSTLl~~l~G~~~~~ 50 (214)
T cd03297 29 FGASGAGKSTLLRCIAGLEKPD 50 (214)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 388
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.49 E-value=8.8e-05 Score=41.87 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~nGsGKStLl~~i~G~~~~~ 52 (180)
T cd03214 31 LGPNGAGKSTLLKTLAGLLKPS 52 (180)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 389
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=8.1e-05 Score=43.61 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~~~ 54 (241)
T cd03256 33 IGPSGAGKSTLLRCLNGLVEPT 54 (241)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999997765543
No 390
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.48 E-value=8.5e-05 Score=44.04 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~NGsGKSTLlk~L~G~~~p~ 52 (246)
T cd03237 31 LGPNGIGKTTFIKMLAGVLKPD 52 (246)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC
Confidence 5999999999999998776554
No 391
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=97.48 E-value=0.00029 Score=45.13 Aligned_cols=18 Identities=28% Similarity=0.460 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|+.++|||||++.+.++
T Consensus 23 vGpvrtGKSTfIn~fm~q 40 (492)
T TIGR02836 23 VGPVRTGKSTFIKKFMEL 40 (492)
T ss_pred EcCCCCChHHHHHHHHhh
Confidence 599999999999888666
No 392
>PRK10646 ADP-binding protein; Provisional
Probab=97.48 E-value=0.00085 Score=37.35 Aligned_cols=54 Identities=15% Similarity=0.191 Sum_probs=29.1
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEee-cCCceeEEEEEecCCCcc
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDI-ANSSFLQYQLWDCPGQMD 56 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~~ 56 (81)
|+-|+|||+|++.+...+-... ....||+.+...-. ....-+.+.++-..+.+.
T Consensus 35 GdLGaGKTtf~rgl~~~Lg~~~-~V~SPTFtlv~~Y~~~~~~l~H~DlYRL~~~~e 89 (153)
T PRK10646 35 GDLGAGKTTFSRGFLQALGHQG-NVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEE 89 (153)
T ss_pred CCCCCCHHHHHHHHHHHcCCCC-CCCCCCEeeEEEeeCCCCCEEEEeeccCCCHHH
Confidence 8889999999988866554332 23355544322211 112234455555554433
No 393
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.48 E-value=9.1e-05 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~ 54 (204)
T PRK13538 33 EGPNGAGKTSLLRILAGLARPD 54 (204)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 394
>PRK10908 cell division protein FtsE; Provisional
Probab=97.48 E-value=8.8e-05 Score=43.06 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+..++.
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~ 55 (222)
T PRK10908 34 TGHSGAGKSTLLKLICGIERPS 55 (222)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 395
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.48 E-value=0.00058 Score=37.80 Aligned_cols=66 Identities=12% Similarity=0.211 Sum_probs=33.7
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEee-cCCceeEEEEEecCCCccccccchhhhhcc
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDI-ANSSFLQYQLWDCPGQMDFQDFDAELIFAR 68 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~ 68 (81)
|+=|+|||||.+-+...+.- ......||+.....-. ....-+.+.++-....+....+-...|+..
T Consensus 32 GdLGAGKTtf~rgi~~~Lg~-~~~V~SPTFtlv~~Y~~~~~~lyH~DlYRl~d~ee~~~lg~~e~~~~ 98 (149)
T COG0802 32 GDLGAGKTTLVRGIAKGLGV-DGNVKSPTFTLVEEYEEGRLPLYHFDLYRLSDPEELDELGLDEYFDG 98 (149)
T ss_pred cCCcCChHHHHHHHHHHcCC-CCcccCCCeeeehhhcCCCCcEEEEeeeccCChHHhHhcCHHHHhCC
Confidence 78899999999877555543 2223345533222211 113345555665554443333323344443
No 396
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.47 E-value=8.8e-05 Score=40.58 Aligned_cols=22 Identities=23% Similarity=0.594 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||+|++.+.+..++.
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 32 VGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999998776554
No 397
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.47 E-value=8.9e-05 Score=44.23 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 44 ~G~NGsGKSTLlk~l~Gl~~p~ 65 (257)
T PRK11247 44 VGRSGCGKSTLLRLLAGLETPS 65 (257)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776554
No 398
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.47 E-value=6.6e-05 Score=42.54 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=14.3
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||||++.+.
T Consensus 27 ~G~nG~GKSTLl~~il 42 (176)
T cd03238 27 TGVSGSGKSTLVNEGL 42 (176)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 5999999999998774
No 399
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.47 E-value=9.3e-05 Score=43.15 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (230)
T TIGR03410 32 LGRNGVGKTTLLKTLMGLLPVK 53 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 400
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.46 E-value=6.4e-05 Score=39.44 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.0
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||+|++.+.
T Consensus 21 ~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 21 TGDSGIGKTELALELI 36 (107)
T ss_pred EcCCCCCHHHHHHHhh
Confidence 5999999999998764
No 401
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=9.6e-05 Score=43.04 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~ 56 (229)
T cd03254 35 VGPTGAGKTTLINLLMRFYDPQ 56 (229)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999998776554
No 402
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.46 E-value=8e-05 Score=41.59 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+||||+++.+.+..
T Consensus 1 ~G~sGsGKSTla~~la~~l 19 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQL 19 (163)
T ss_pred CCCCCCcHHHHHHHHHHHh
Confidence 7999999999998886554
No 403
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.46 E-value=8.7e-05 Score=43.19 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=17.2
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 32 ~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 32 IGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 5999999999999998776
No 404
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.46 E-value=0.0001 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~ 55 (242)
T PRK11124 34 LGPSGAGKSSLLRVLNLLEMPR 55 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 405
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.46 E-value=9.9e-05 Score=41.42 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKStLl~~l~G~~~~~ 55 (173)
T cd03246 34 IGPSGSGKSTLARLILGLLRPT 55 (173)
T ss_pred ECCCCCCHHHHHHHHHhccCCC
Confidence 5999999999999998776554
No 406
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=9.9e-05 Score=43.35 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~ 56 (241)
T PRK10895 35 LGPNGAGKTTTFYMVVGIVPRD 56 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00036 Score=39.31 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=26.7
Q ss_pred CCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecC
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCP 52 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~ 52 (81)
|.+|||||+++..+.+....... .... .+..+...+++.+-|.+.|..
T Consensus 12 G~PGvGKtTl~~ki~e~L~~~g~-kvgG--f~t~EVR~gGkR~GF~Ivdl~ 59 (179)
T COG1618 12 GRPGVGKTTLVLKIAEKLREKGY-KVGG--FITPEVREGGKRIGFKIVDLA 59 (179)
T ss_pred CCCCccHHHHHHHHHHHHHhcCc-eeee--EEeeeeecCCeEeeeEEEEcc
Confidence 89999999998766544433311 1111 123333334555666666665
No 408
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=97.45 E-value=9.8e-05 Score=44.88 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 lG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 37 LGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 6999999999999998887764
No 409
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.45 E-value=0.00016 Score=41.41 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|||||||++.|....
T Consensus 10 sgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 10 SGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ECCCCCCHHHHHHHHHhhc
Confidence 3899999999998886665
No 410
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.45 E-value=9.6e-05 Score=44.23 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~Gl~~p~ 54 (271)
T PRK13638 33 VGANGCGKSTLFMNLSGLLRPQ 54 (271)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999998776554
No 411
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.0001 Score=43.38 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~ 54 (242)
T cd03295 33 IGPSGSGKTTTMKMINRLIEPT 54 (242)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998766543
No 412
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00011 Score=41.26 Aligned_cols=22 Identities=27% Similarity=0.655 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||+|++.+.+...+.
T Consensus 32 ~G~nGsGKStLl~~l~G~~~~~ 53 (173)
T cd03230 32 LGPNGAGKTTLIKIILGLLKPD 53 (173)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998766543
No 413
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.44 E-value=0.0001 Score=42.98 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~l~G~~~~~ 60 (225)
T PRK10247 39 TGPSGCGKSTLLKIVASLISPT 60 (225)
T ss_pred ECCCCCCHHHHHHHHhcccCCC
Confidence 5999999999999998765543
No 414
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.44 E-value=0.00011 Score=42.06 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~~~ 54 (200)
T PRK13540 33 KGSNGAGKTTLLKLIAGLLNPE 54 (200)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999997776554
No 415
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.44 E-value=0.0001 Score=45.98 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 36 lG~sGsGKSTLLr~iaGl~~p~ 57 (356)
T PRK11650 36 VGPSGCGKSTLLRMVAGLERIT 57 (356)
T ss_pred ECCCCCcHHHHHHHHHCCCCCC
Confidence 5999999999999998776554
No 416
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.44 E-value=0.00011 Score=44.77 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 25 ~G~NGaGKSTLl~~l~Gl~~p~ 46 (302)
T TIGR01188 25 LGPNGAGKTTTIRMLTTLLRPT 46 (302)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999998876654
No 417
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.44 E-value=0.00011 Score=42.79 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 42 ~G~nGsGKSTLl~~i~Gl~~p~ 63 (228)
T PRK10584 42 IGESGSGKSTLLAILAGLDDGS 63 (228)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 5999999999999998876554
No 418
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.44 E-value=0.00011 Score=43.00 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 17 ~G~nGsGKSTLl~~l~Gl~~p~ 38 (230)
T TIGR01184 17 IGHSGCGKSTLLNLISGLAQPT 38 (230)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 419
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.43 E-value=0.00011 Score=41.98 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (198)
T TIGR01189 32 TGPNGIGKTTLLRILAGLLRPD 53 (198)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 420
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.43 E-value=0.00012 Score=40.97 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~ 54 (166)
T cd03223 33 TGPSGTGKSSLFRALAGLWPWG 54 (166)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776554
No 421
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.00012 Score=38.52 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||++++.+.......
T Consensus 8 ~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 8 VGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred ECCCCCcHHHHHHHHHhccCCC
Confidence 4999999999998886666554
No 422
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00011 Score=44.22 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~i~Gl~~p~ 60 (280)
T PRK13649 39 IGHTGSGKSTIMQLLNGLHVPT 60 (280)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 423
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00011 Score=43.98 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 56 ~G~nGsGKSTLl~~L~Gl~~p~ 77 (269)
T cd03294 56 MGLSGSGKSTLLRCINRLIEPT 77 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876554
No 424
>KOG1547|consensus
Probab=97.43 E-value=0.00041 Score=41.60 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=30.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CC-----CCceeeecceee---eEEEeecCCceeEEEEEecCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MS-----PNETLFLEGTNK---MTKEDIANSSFLQYQLWDCPGQ 54 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~D~~G~ 54 (81)
+|.+|.|||||++.++.. .. +.....+..|.. .......++-..++.+.||||-
T Consensus 52 VgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGf 114 (336)
T KOG1547|consen 52 VGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGF 114 (336)
T ss_pred EecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCc
Confidence 699999999999766321 11 111111111211 2222223455678899999993
No 425
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00011 Score=44.46 Aligned_cols=22 Identities=18% Similarity=0.324 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~p~ 64 (289)
T PRK13645 43 IGTTGSGKSTMIQLTNGLIISE 64 (289)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776554
No 426
>KOG0461|consensus
Probab=97.43 E-value=0.0004 Score=43.61 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=44.6
Q ss_pred CCCCCCcHhHHHHHHhc-----cCCCCcee---eecceeeeEE------EeecCCceeEEEEEecCCCccccccchhhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQ-----KMSPNETL---FLEGTNKMTK------EDIANSSFLQYQLWDCPGQMDFQDFDAELIF 66 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-----~~~~~~~~---~~~~~~~~~~------~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~ 66 (81)
+|.-.+|||+|.|.+.. .|+.++.+ .+.-+.++.- ..++.++..++.+.||||+...-+... --.
T Consensus 13 LGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtii-gga 91 (522)
T KOG0461|consen 13 LGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTII-GGA 91 (522)
T ss_pred EeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHH-hhh
Confidence 46667999999988832 23332211 1111122211 123357778899999999875433211 222
Q ss_pred ccCCEEEEEEEcc
Q psy9524 67 ARCGALIFVIDTS 79 (81)
Q Consensus 67 ~~~~~~i~v~D~~ 79 (81)
.-.|..++|+|++
T Consensus 92 qiiDlm~lviDv~ 104 (522)
T KOG0461|consen 92 QIIDLMILVIDVQ 104 (522)
T ss_pred heeeeeeEEEehh
Confidence 3357889999975
No 427
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.43 E-value=0.00011 Score=43.25 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~Gl~~p~ 56 (241)
T PRK14250 35 VGPSGAGKSTLIKLINRLIDPT 56 (241)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 428
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.42 E-value=0.00011 Score=45.77 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 38 lGpsGsGKSTLLr~IaGl~~p~ 59 (351)
T PRK11432 38 LGPSGCGKTTVLRLVAGLEKPT 59 (351)
T ss_pred ECCCCCcHHHHHHHHHCCCCCC
Confidence 5999999999999998776654
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.42 E-value=5.3e-05 Score=39.85 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++||||||+.+.|..++
T Consensus 5 ~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 5 SGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4899999999998886653
No 430
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.42 E-value=0.00012 Score=43.31 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~ 56 (253)
T TIGR02323 35 VGESGSGKSTLLGCLAGRLAPD 56 (253)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 431
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.42 E-value=0.00011 Score=43.11 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 53 ~G~NGsGKSTLl~~i~Gl~~p~ 74 (236)
T cd03267 53 IGPNGAGKTTTLKILSGLLQPT 74 (236)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998876554
No 432
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.42 E-value=0.00012 Score=42.49 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+..++.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (223)
T TIGR03740 32 LGPNGAGKSTLLKMITGILRPT 53 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 433
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.42 E-value=0.00011 Score=42.98 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+...+
T Consensus 18 ~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 18 VGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred ECCCCCCHHHHHHHHhcCCCC
Confidence 599999999999999887665
No 434
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.41 E-value=0.00012 Score=41.22 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKStLl~~l~G~~~~~ 55 (178)
T cd03247 34 LGRSGSGKSTLLQLLTGDLKPQ 55 (178)
T ss_pred ECCCCCCHHHHHHHHhccCCCC
Confidence 5999999999999998776553
No 435
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.00011 Score=45.05 Aligned_cols=22 Identities=18% Similarity=0.513 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||+|||.+.+-..+.
T Consensus 34 lGpSGaGKsTlLRiIAGLe~p~ 55 (345)
T COG1118 34 LGPSGAGKSTLLRIIAGLETPD 55 (345)
T ss_pred ECCCCCcHHHHHHHHhCcCCCC
Confidence 5999999999999997766655
No 436
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.41 E-value=0.00013 Score=42.09 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~~~ 55 (207)
T PRK13539 34 TGPNGSGKTTLLRLIAGLLPPA 55 (207)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876544
No 437
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00012 Score=40.95 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKstLl~~i~G~~~~~ 55 (171)
T cd03228 34 VGPSGSGKSTLLKLLLRLYDPT 55 (171)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 5999999999999998776554
No 438
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.41 E-value=0.00012 Score=42.99 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~G~~~p~ 55 (242)
T TIGR03411 34 IGPNGAGKTTMMDVITGKTRPD 55 (242)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 439
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.41 E-value=0.00011 Score=45.67 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 36 ~GpsGsGKSTLLr~iaGl~~p~ 57 (353)
T TIGR03265 36 LGPSGCGKTTLLRIIAGLERQT 57 (353)
T ss_pred ECCCCCCHHHHHHHHHCCCCCC
Confidence 5999999999999998876554
No 440
>KOG1144|consensus
Probab=97.41 E-value=0.00025 Score=48.09 Aligned_cols=79 Identities=19% Similarity=0.277 Sum_probs=49.9
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCc----eeeecceeeeEEE------eec-C----CceeEEEEEecCCCccccccchhh
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNE----TLFLEGTNKMTKE------DIA-N----SSFLQYQLWDCPGQMDFQDFDAEL 64 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~----~~~~~~~~~~~~~------~~~-~----~~~~~l~~~D~~G~~~~~~~~~~~ 64 (81)
||.=..|||-|+..+.+ +....+ +..+..|+..... .+. + .+.--+.+.||||++.|..++ ..
T Consensus 481 lGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlR-sr 559 (1064)
T KOG1144|consen 481 LGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLR-SR 559 (1064)
T ss_pred eecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhh-hc
Confidence 46677899999977744 333322 2233333221110 000 1 122346889999999999994 47
Q ss_pred hhccCCEEEEEEEccC
Q psy9524 65 IFARCGALIFVIDTSM 80 (81)
Q Consensus 65 ~~~~~~~~i~v~D~~~ 80 (81)
...-||.+|+|+|+..
T Consensus 560 gsslC~~aIlvvdImh 575 (1064)
T KOG1144|consen 560 GSSLCDLAILVVDIMH 575 (1064)
T ss_pred cccccceEEEEeehhc
Confidence 8888999999999863
No 441
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=97.40 E-value=0.00014 Score=44.70 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 2 ~G~nGsGKSTLl~~iaGl~~p~ 23 (325)
T TIGR01187 2 LGPSGCGKTTLLRLLAGFEQPD 23 (325)
T ss_pred cCCCCCCHHHHHHHHHCCCCCC
Confidence 6999999999999998776554
No 442
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.40 E-value=0.00012 Score=45.97 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 46 lGpsGsGKSTLLr~IaGl~~p~ 67 (375)
T PRK09452 46 LGPSGCGKTTVLRLIAGFETPD 67 (375)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 443
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00012 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~ 60 (272)
T PRK15056 39 VGVNGSGKSTLFKALMGFVRLA 60 (272)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 444
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.40 E-value=0.00013 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~nGsGKSTLl~~i~G~~~~~ 57 (220)
T cd03245 36 IGRVGSGKSTLLKLLAGLYKPT 57 (220)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999997765543
No 445
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.40 E-value=0.00013 Score=43.73 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~l~Gl~~p~ 60 (269)
T PRK11831 39 MGPSGIGKTTLLRLIGGQIAPD 60 (269)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 446
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.40 E-value=0.00013 Score=43.39 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=20.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~ 23 (81)
+|++|+|||+|+|.+.+...|..
T Consensus 40 iGgSGsGKStlLr~I~Gll~P~~ 62 (263)
T COG1127 40 LGGSGSGKSTLLRLILGLLRPDK 62 (263)
T ss_pred ECCCCcCHHHHHHHHhccCCCCC
Confidence 69999999999999988877753
No 447
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.39 E-value=0.00013 Score=43.18 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (252)
T TIGR03005 32 IGPSGSGKSTILRILMTLEPID 53 (252)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998766553
No 448
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.39 E-value=0.00012 Score=45.77 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLL~~iaGl~~p~ 56 (369)
T PRK11000 35 VGPSGCGKSTLLRMIAGLEDIT 56 (369)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 449
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.39 E-value=0.00013 Score=43.52 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 vG~nGsGKSTLlk~l~Gl~~p~ 53 (255)
T cd03236 32 VGPNGIGKSTALKILAGKLKPN 53 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998876655
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.39 E-value=0.00012 Score=39.76 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||+|++.+...+.
T Consensus 5 ~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 5 SGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 59999999999988866544
No 451
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00013 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+..++.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~~~ 58 (255)
T PRK11300 37 IGPNGAGKTTVFNCLTGFYKPT 58 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998776554
No 452
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.39 E-value=0.00013 Score=43.00 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~l~G~~~~~ 56 (250)
T PRK11264 35 IGPSGSGKTTLLRCINLLEQPE 56 (250)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776543
No 453
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.39 E-value=0.00013 Score=45.26 Aligned_cols=22 Identities=18% Similarity=0.401 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 iG~nGsGKSTLlk~L~Gl~~p~ 58 (343)
T PRK11153 37 IGASGAGKSTLIRCINLLERPT 58 (343)
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 454
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.39 E-value=0.00013 Score=41.80 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 32 ~G~nGsGKSTLl~~l~G~~~~~ 53 (201)
T cd03231 32 TGPNGSGKTTLLRILAGLSPPL 53 (201)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 455
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.38 E-value=0.00014 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 45 ~G~NGsGKSTLl~~l~Gl~~p~ 66 (267)
T PRK15112 45 IGENGSGKSTLAKMLAGMIEPT 66 (267)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 456
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.38 E-value=0.00014 Score=42.01 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 30 ~G~nGsGKSTLl~~l~G~~~~~ 51 (213)
T TIGR01277 30 MGPSGAGKSTLLNLIAGFIEPA 51 (213)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 457
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.38 E-value=0.00013 Score=42.71 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~ 55 (237)
T cd03252 34 VGRSGSGKSTLTKLIQRFYVPE 55 (237)
T ss_pred ECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999998776543
No 458
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.37 E-value=0.00014 Score=43.27 Aligned_cols=22 Identities=27% Similarity=0.644 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~NGsGKSTLl~~i~Gl~~p~ 57 (251)
T PRK09544 36 LGPNGAGKSTLVRVVLGLVAPD 57 (251)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 459
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.37 E-value=0.00014 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 lGpsGsGKSTLLr~IaGl~~p~ 55 (353)
T PRK10851 34 LGPSGSGKTTLLRIIAGLEHQT 55 (353)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 460
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00013 Score=43.14 Aligned_cols=21 Identities=19% Similarity=0.340 Sum_probs=18.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+...+
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 36 MGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred ECCCCCCHHHHHHHHhccCCc
Confidence 599999999999999877654
No 461
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.37 E-value=0.00013 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 30 ~G~nGsGKSTLl~~iaGl~~p~ 51 (352)
T PRK11144 30 FGRSGAGKTSLINAISGLTRPQ 51 (352)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 462
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.37 E-value=0.00014 Score=42.49 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~ 55 (234)
T cd03251 34 VGPSGSGKSTLVNLIPRFYDVD 55 (234)
T ss_pred ECCCCCCHHHHHHHHhccccCC
Confidence 5999999999999997776554
No 463
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00014 Score=43.20 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=18.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||.+.+.+-..+.
T Consensus 39 vGeSGsGKSTL~r~l~Gl~~p~ 60 (252)
T COG1124 39 VGESGSGKSTLARLLAGLEKPS 60 (252)
T ss_pred EcCCCCCHHHHHHHHhcccCCC
Confidence 6999999999999996655543
No 464
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.37 E-value=0.00014 Score=43.29 Aligned_cols=22 Identities=23% Similarity=0.581 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~i~G~~~p~ 55 (258)
T PRK13548 34 LGPNGAGKSTLLRALSGELSPD 55 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 465
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.37 E-value=0.00015 Score=43.06 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~ 59 (258)
T PRK11701 38 VGESGSGKTTLLNALSARLAPD 59 (258)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876554
No 466
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00014 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 ~G~nGsGKSTLl~~l~Gl~~~~ 52 (232)
T PRK10771 31 LGPSGAGKSTLLNLIAGFLTPA 52 (232)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999997765543
No 467
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00015 Score=43.47 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~ 62 (271)
T PRK13632 41 LGHNGSGKSTISKILTGLLKPQ 62 (271)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776553
No 468
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.36 E-value=0.00015 Score=42.00 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~nGsGKSTLl~~l~G~~~~~ 57 (221)
T cd03244 36 VGRTGSGKSSLLLALFRLVELS 57 (221)
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 5999999999999998765543
No 469
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.36 E-value=0.00013 Score=42.69 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 35 ~G~nGsGKSTLl~~i~G~~~~~ 56 (238)
T cd03249 35 VGSSGCGKSTVVSLLERFYDPT 56 (238)
T ss_pred EeCCCCCHHHHHHHHhccCCCC
Confidence 5999999999999998776544
No 470
>KOG1487|consensus
Probab=97.36 E-value=0.00049 Score=41.69 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=46.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc--------cccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM--------DFQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~~~~~~ 72 (81)
+|=+++|||+++.-+.+.+.+... .+.+.....--....+.-++++.|.||-- +-+.. - ...|.|+.+
T Consensus 65 vgFPSvGksTl~~~l~g~~s~vas--yefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qv-i-avartcnli 140 (358)
T KOG1487|consen 65 VGFPSVGKSTLLSKLTGTFSEVAA--YEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQV-I-AVARTCNLI 140 (358)
T ss_pred EecCccchhhhhhhhcCCCCcccc--ccceeEEEecceEeccccceeeecCcchhcccccCCCCccEE-E-EEeecccEE
Confidence 356899999999766565544321 11221111111112566789999999832 12222 2 456789999
Q ss_pred EEEEEccCC
Q psy9524 73 IFVIDTSMG 81 (81)
Q Consensus 73 i~v~D~~~~ 81 (81)
++|.|+..|
T Consensus 141 ~~vld~~kp 149 (358)
T KOG1487|consen 141 FIVLDVLKP 149 (358)
T ss_pred EEEeeccCc
Confidence 999998654
No 471
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.36 E-value=0.00015 Score=42.17 Aligned_cols=22 Identities=23% Similarity=0.516 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 40 ~G~nGsGKSTLl~~i~G~~~~~ 61 (224)
T TIGR02324 40 SGPSGAGKSTLLKSLYANYLPD 61 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999997775543
No 472
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00015 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~L~Gl~~p~ 60 (286)
T PRK13646 39 VGQTGSGKSTLIQNINALLKPT 60 (286)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 473
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.35 E-value=0.00015 Score=42.77 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 33 IGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred ECCCCCCHHHHHHHHhccCCCC
Confidence 5999999999999998776543
No 474
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.35 E-value=0.00015 Score=43.22 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~p~ 64 (265)
T TIGR02769 43 LGRSGCGKSTLARLLLGLEKPA 64 (265)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 475
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.35 E-value=0.00016 Score=43.29 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 41 ~G~nGsGKSTLl~~i~Gl~~~~ 62 (269)
T PRK13648 41 VGHNGSGKSTIAKLMIGIEKVK 62 (269)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876554
No 476
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=97.35 E-value=0.00016 Score=42.17 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 12 ~G~nGsGKSTLl~~l~G~~~~~ 33 (223)
T TIGR03771 12 LGPNGAGKTTLLRAILGLIPPA 33 (223)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998766544
No 477
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.35 E-value=0.00016 Score=42.32 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~i~Gl~~~~ 54 (236)
T cd03253 33 VGPSGSGKSTILRLLFRFYDVS 54 (236)
T ss_pred ECCCCCCHHHHHHHHhcccCCC
Confidence 5999999999999998776544
No 478
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.35 E-value=0.00015 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 37 iG~sGaGKSTLlr~I~gl~~p~ 58 (343)
T TIGR02314 37 IGASGAGKSTLIRCVNLLERPT 58 (343)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 6999999999999997766554
No 479
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.35 E-value=0.00016 Score=41.89 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 43 ~G~nGsGKSTLl~~i~G~~~~~ 64 (214)
T PRK13543 43 QGDNGAGKTTLLRVLAGLLHVE 64 (214)
T ss_pred EcCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776554
No 480
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.35 E-value=0.00015 Score=44.11 Aligned_cols=22 Identities=27% Similarity=0.671 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 36 ~G~NGaGKSTLl~~l~Gl~~p~ 57 (303)
T TIGR01288 36 LGPNGAGKSTIARMLLGMISPD 57 (303)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998766553
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.35 E-value=0.00018 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=12.8
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
.|++|+|||||+..+
T Consensus 29 ~G~nGsGKSTllDAi 43 (62)
T PF13555_consen 29 TGPNGSGKSTLLDAI 43 (62)
T ss_pred ECCCCCCHHHHHHHH
Confidence 489999999998655
No 482
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=97.35 E-value=0.00015 Score=45.07 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 29 ~G~nGsGKSTLl~~iaGl~~p~ 50 (354)
T TIGR02142 29 FGRSGSGKTTLIRLIAGLTRPD 50 (354)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 483
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.00019 Score=41.36 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=18.5
Q ss_pred CCCCCcHhHHHHHHhccCCCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~~~ 22 (81)
|+.|+|||||+|.+.+-..+.
T Consensus 35 G~NG~GKTtLLRilaGLl~p~ 55 (209)
T COG4133 35 GPNGAGKTTLLRILAGLLRPD 55 (209)
T ss_pred CCCCCcHHHHHHHHHcccCCC
Confidence 899999999999998776665
No 484
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.34 E-value=0.00016 Score=41.46 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 37 ~G~nG~GKSTLl~~i~G~~~~~ 58 (204)
T cd03250 37 VGPVGSGKSSLLSALLGELEKL 58 (204)
T ss_pred ECCCCCCHHHHHHHHhCcCCCC
Confidence 5999999999999998776554
No 485
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.34 E-value=0.00015 Score=42.65 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+.|+|||||++.|.+.+.+.
T Consensus 33 lGPNGAGKSTlLk~LsGel~p~ 54 (259)
T COG4559 33 LGPNGAGKSTLLKALSGELSPD 54 (259)
T ss_pred ECCCCccHHHHHHHhhCccCCC
Confidence 6999999999999998887765
No 486
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.34 E-value=0.00015 Score=45.26 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~ 23 (81)
+|++|+|||||++.+.+-..+..
T Consensus 37 lGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 37 IGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCC
Confidence 59999999999999987665543
No 487
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.34 E-value=0.00016 Score=42.90 Aligned_cols=22 Identities=23% Similarity=0.504 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~~~ 55 (255)
T PRK11231 34 IGPNGCGKSTLLKCFARLLTPQ 55 (255)
T ss_pred ECCCCCCHHHHHHHHhCCcCCC
Confidence 5999999999999998765543
No 488
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.33 E-value=0.00014 Score=38.42 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.5
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+....
T Consensus 4 ~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 4 HGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECcCCCCeeHHHHHHHhhc
Confidence 4999999999999887665
No 489
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.33 E-value=0.00017 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~l~G~~~~~ 54 (240)
T PRK09493 33 IGPSGSGKSTLLRCINKLEEIT 54 (240)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776544
No 490
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.33 E-value=0.00017 Score=42.08 Aligned_cols=22 Identities=18% Similarity=0.489 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 54 ~G~nGsGKSTLl~~l~G~~~p~ 75 (224)
T cd03220 54 IGRNGAGKSTLLRLLAGIYPPD 75 (224)
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998765543
No 491
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.33 E-value=0.00015 Score=40.79 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|||||||++.+....
T Consensus 7 ~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 7 VGPSGAGKDTLLDYARARL 25 (179)
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999998875554
No 492
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00015 Score=43.23 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+..++.
T Consensus 43 ~G~nGsGKSTLl~~l~Gl~~~~ 64 (265)
T PRK10575 43 IGHNGSGKSTLLKMLGRHQPPS 64 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999998766543
No 493
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.32 E-value=0.00017 Score=43.58 Aligned_cols=22 Identities=23% Similarity=0.418 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 iG~NGaGKSTLl~~l~Gl~~p~ 60 (287)
T PRK13641 39 VGHTGSGKSTLMQHFNALLKPS 60 (287)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876654
No 494
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.32 E-value=0.00016 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGsGKSTLl~~i~G~~~~~ 60 (265)
T PRK10253 39 IGPNGCGKSTLLRTLSRLMTPA 60 (265)
T ss_pred ECCCCCCHHHHHHHHcCCCCCC
Confidence 5999999999999998776553
No 495
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.32 E-value=0.00016 Score=45.22 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 25 ~G~sGsGKSTLLr~L~Gl~~p~ 46 (363)
T TIGR01186 25 MGLSGSGKSTTVRMLNRLIEPT 46 (363)
T ss_pred ECCCCChHHHHHHHHhCCCCCC
Confidence 6999999999999998776654
No 496
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.31 E-value=0.00018 Score=43.38 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 39 ~G~nGaGKSTLl~~i~G~~~p~ 60 (279)
T PRK13635 39 VGHNGSGKSTLAKLLNGLLLPE 60 (279)
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 5999999999999998876654
No 497
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.31 E-value=0.00018 Score=40.36 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.|....
T Consensus 7 ~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 7 SGPSGVGKSTLVKALLEED 25 (180)
T ss_pred ECCCCCCHHHHHHHHHccC
Confidence 5999999999998886654
No 498
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00018 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+.|+|||||++.+.+-..+.
T Consensus 36 iGPNGaGKSTLlK~iLGll~p~ 57 (254)
T COG1121 36 IGPNGAGKSTLLKAILGLLKPS 57 (254)
T ss_pred ECCCCCCHHHHHHHHhCCCcCC
Confidence 6999999999999998866654
No 499
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.31 E-value=0.00019 Score=41.61 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 33 ~G~nGsGKSTLl~~i~G~~~~~ 54 (218)
T cd03290 33 VGQVGCGKSSLLLAILGEMQTL 54 (218)
T ss_pred ECCCCCCHHHHHHHHhccCCCC
Confidence 5999999999999998776543
No 500
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.31 E-value=0.00017 Score=42.88 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|+.|+|||||++.+.+..++.
T Consensus 63 ~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 63 VGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred ECCCCCCHHHHHHHHhcccCCC
Confidence 5999999999999997776664
Done!