Query psy9524
Match_columns 81
No_of_seqs 163 out of 1132
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 21:50:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9524.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9524hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 1.8E-23 6.1E-28 119.9 8.1 79 1-81 19-98 (216)
2 3r7w_B Gtpase2, GTP-binding pr 99.9 8E-23 2.7E-27 123.0 5.1 79 1-81 5-85 (331)
3 3llu_A RAS-related GTP-binding 99.9 1.1E-21 3.8E-26 110.2 6.7 81 1-81 26-108 (196)
4 3t1o_A Gliding protein MGLA; G 99.8 1.9E-20 6.3E-25 104.4 6.3 79 1-80 20-109 (198)
5 3q3j_B RHO-related GTP-binding 99.8 8.3E-20 2.8E-24 104.0 9.1 78 1-81 33-111 (214)
6 2hxs_A RAB-26, RAS-related pro 99.8 3.5E-20 1.2E-24 102.1 6.6 79 1-80 12-91 (178)
7 1ek0_A Protein (GTP-binding pr 99.8 1.1E-19 3.8E-24 99.2 8.5 78 1-80 9-87 (170)
8 3reg_A RHO-like small GTPase; 99.8 1.1E-19 3.7E-24 101.7 8.5 77 1-80 29-106 (194)
9 1m7b_A RND3/RHOE small GTP-bin 99.8 1.1E-19 3.6E-24 101.1 8.0 77 1-80 13-90 (184)
10 1mh1_A RAC1; GTP-binding, GTPa 99.8 1.5E-19 5E-24 100.1 8.6 77 1-80 11-88 (186)
11 1r2q_A RAS-related protein RAB 99.8 1.8E-19 6E-24 98.3 8.6 78 1-80 12-90 (170)
12 2q3h_A RAS homolog gene family 99.8 1.7E-19 5.8E-24 101.3 8.5 77 1-80 26-103 (201)
13 1z08_A RAS-related protein RAB 99.8 1.5E-19 5E-24 98.8 7.7 78 1-80 12-90 (170)
14 2j0v_A RAC-like GTP-binding pr 99.8 1.2E-19 4E-24 102.7 7.5 77 1-80 15-92 (212)
15 1c1y_A RAS-related protein RAP 99.8 1.3E-19 4.5E-24 98.7 7.4 77 1-80 9-86 (167)
16 2efe_B Small GTP-binding prote 99.8 2.6E-19 8.7E-24 98.8 8.6 78 1-80 18-96 (181)
17 1r8s_A ADP-ribosylation factor 99.8 9E-20 3.1E-24 99.3 6.7 75 1-81 6-80 (164)
18 2ew1_A RAS-related protein RAB 99.8 1.2E-19 4.1E-24 102.6 7.4 78 1-80 32-110 (201)
19 2fg5_A RAB-22B, RAS-related pr 99.8 3.5E-19 1.2E-23 99.6 9.1 79 1-81 29-108 (192)
20 2a5j_A RAS-related protein RAB 99.8 2.1E-19 7.2E-24 100.4 8.1 78 1-80 27-105 (191)
21 1gwn_A RHO-related GTP-binding 99.8 2E-19 6.8E-24 102.0 8.0 77 1-80 34-111 (205)
22 3kkq_A RAS-related protein M-R 99.8 1.9E-19 6.5E-24 99.7 7.7 77 1-80 24-101 (183)
23 1z0j_A RAB-22, RAS-related pro 99.8 3.7E-19 1.3E-23 97.2 8.6 78 1-80 12-90 (170)
24 2oil_A CATX-8, RAS-related pro 99.8 3.1E-19 1.1E-23 99.7 8.5 78 1-80 31-109 (193)
25 3tkl_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 99.4 8.7 78 1-80 22-100 (196)
26 2atx_A Small GTP binding prote 99.8 2.2E-19 7.4E-24 100.4 7.8 77 1-80 24-101 (194)
27 1z2a_A RAS-related protein RAB 99.8 2.3E-19 7.9E-24 97.8 7.7 78 1-80 11-89 (168)
28 2hup_A RAS-related protein RAB 99.8 1.1E-19 3.8E-24 102.5 6.6 78 1-80 35-113 (201)
29 1x3s_A RAS-related protein RAB 99.8 3.4E-19 1.2E-23 99.3 8.5 78 1-80 21-99 (195)
30 4bas_A ADP-ribosylation factor 99.8 1.9E-19 6.6E-24 100.6 7.5 77 1-81 23-99 (199)
31 2gf9_A RAS-related protein RAB 99.8 5.1E-19 1.8E-23 98.6 9.1 78 1-80 28-106 (189)
32 1wms_A RAB-9, RAB9, RAS-relate 99.8 3.6E-19 1.2E-23 97.9 8.3 78 1-80 13-91 (177)
33 1g16_A RAS-related protein SEC 99.8 1.9E-19 6.3E-24 98.4 7.0 78 1-80 9-87 (170)
34 1vg8_A RAS-related protein RAB 99.8 4.3E-19 1.5E-23 99.8 8.7 78 1-80 14-92 (207)
35 3tw8_B RAS-related protein RAB 99.8 2.2E-19 7.6E-24 98.9 7.3 78 1-80 15-93 (181)
36 3t5g_A GTP-binding protein RHE 99.8 2.7E-19 9.2E-24 98.9 7.6 77 1-80 12-89 (181)
37 3c5c_A RAS-like protein 12; GD 99.8 3.3E-19 1.1E-23 99.5 8.0 76 1-80 27-103 (187)
38 1z06_A RAS-related protein RAB 99.8 3E-19 1E-23 99.5 7.8 78 1-80 26-105 (189)
39 2bme_A RAB4A, RAS-related prot 99.8 2.1E-19 7.1E-24 99.6 6.9 78 1-80 16-94 (186)
40 1upt_A ARL1, ADP-ribosylation 99.8 5.1E-19 1.7E-23 96.8 8.4 75 1-81 13-87 (171)
41 4dsu_A GTPase KRAS, isoform 2B 99.8 2.9E-19 1E-23 99.1 7.5 78 1-80 10-87 (189)
42 1zbd_A Rabphilin-3A; G protein 99.8 3.5E-19 1.2E-23 100.1 7.9 78 1-80 14-92 (203)
43 2bcg_Y Protein YP2, GTP-bindin 99.8 3.2E-19 1.1E-23 100.5 7.7 78 1-80 14-92 (206)
44 1fzq_A ADP-ribosylation factor 99.8 1.5E-19 5.1E-24 100.5 6.2 75 1-81 22-96 (181)
45 4gzl_A RAS-related C3 botulinu 99.8 3.7E-19 1.3E-23 100.6 7.9 77 1-80 36-113 (204)
46 1ky3_A GTP-binding protein YPT 99.8 2.2E-19 7.6E-24 98.9 6.8 79 1-80 14-93 (182)
47 2y8e_A RAB-protein 6, GH09086P 99.8 4.3E-19 1.5E-23 97.6 7.7 78 1-80 20-98 (179)
48 3r7w_A Gtpase1, GTP-binding pr 99.8 2.8E-19 9.4E-24 106.8 7.5 80 1-81 9-93 (307)
49 3q72_A GTP-binding protein RAD 99.8 1.7E-19 5.9E-24 98.4 6.1 78 1-81 8-85 (166)
50 3q85_A GTP-binding protein REM 99.8 2.4E-19 8.2E-24 98.0 6.6 79 1-80 8-87 (169)
51 3cpj_B GTP-binding protein YPT 99.8 3.9E-19 1.3E-23 101.5 7.8 78 1-80 19-97 (223)
52 1z0f_A RAB14, member RAS oncog 99.8 4.1E-19 1.4E-23 97.7 7.3 78 1-80 21-99 (179)
53 2il1_A RAB12; G-protein, GDP, 99.8 2.5E-19 8.6E-24 100.3 6.4 78 1-80 32-110 (192)
54 2fv8_A H6, RHO-related GTP-bin 99.8 6.2E-19 2.1E-23 99.7 8.1 77 1-80 31-108 (207)
55 1kao_A RAP2A; GTP-binding prot 99.8 3.5E-19 1.2E-23 96.8 6.8 77 1-80 9-86 (167)
56 2gco_A H9, RHO-related GTP-bin 99.8 5E-19 1.7E-23 99.7 7.7 77 1-80 31-108 (201)
57 2fu5_C RAS-related protein RAB 99.8 7.7E-20 2.6E-24 101.2 4.3 78 1-80 14-92 (183)
58 1u8z_A RAS-related protein RAL 99.8 3.1E-19 1E-23 97.1 6.5 77 1-80 10-87 (168)
59 2p5s_A RAS and EF-hand domain 99.8 3.3E-19 1.1E-23 100.2 6.7 78 1-80 34-112 (199)
60 2j1l_A RHO-related GTP-binding 99.8 1.9E-19 6.4E-24 102.4 5.8 77 1-80 40-117 (214)
61 3oes_A GTPase rhebl1; small GT 99.8 4.3E-19 1.5E-23 99.9 7.2 77 1-80 30-107 (201)
62 2h17_A ADP-ribosylation factor 99.8 3.4E-19 1.2E-23 98.8 6.5 75 1-81 27-101 (181)
63 3cph_A RAS-related protein SEC 99.8 8.3E-19 2.8E-23 99.0 8.2 78 1-80 26-104 (213)
64 2nzj_A GTP-binding protein REM 99.8 4.3E-19 1.5E-23 97.4 6.8 78 1-80 10-89 (175)
65 2g6b_A RAS-related protein RAB 99.8 7.4E-19 2.5E-23 96.9 7.8 78 1-80 16-95 (180)
66 3bwd_D RAC-like GTP-binding pr 99.8 1.7E-19 5.7E-24 99.7 5.2 77 1-80 14-91 (182)
67 2erx_A GTP-binding protein DI- 99.8 6E-19 2.1E-23 96.4 7.4 77 1-80 9-86 (172)
68 1ksh_A ARF-like protein 2; sma 99.8 3E-19 1E-23 99.1 6.2 75 1-81 24-98 (186)
69 2fn4_A P23, RAS-related protei 99.8 7.8E-19 2.7E-23 96.7 7.8 77 1-80 15-92 (181)
70 1zj6_A ADP-ribosylation factor 99.8 3.2E-19 1.1E-23 99.3 6.2 75 1-81 22-96 (187)
71 1m2o_B GTP-binding protein SAR 99.8 6E-19 2.1E-23 98.7 7.2 75 1-81 29-103 (190)
72 3clv_A RAB5 protein, putative; 99.8 1.3E-18 4.5E-23 97.1 8.4 37 44-81 93-129 (208)
73 3bc1_A RAS-related protein RAB 99.8 1.1E-18 3.6E-23 97.0 8.0 79 1-80 17-105 (195)
74 1f6b_A SAR1; gtpases, N-termin 99.8 2.7E-19 9.4E-24 100.7 5.6 75 1-81 31-105 (198)
75 3dz8_A RAS-related protein RAB 99.8 1.9E-19 6.4E-24 100.6 4.9 78 1-80 29-107 (191)
76 2o52_A RAS-related protein RAB 99.8 3.5E-19 1.2E-23 100.3 6.0 78 1-80 31-109 (200)
77 1zd9_A ADP-ribosylation factor 99.8 5.4E-19 1.8E-23 98.6 6.6 74 1-80 28-102 (188)
78 2b6h_A ADP-ribosylation factor 99.8 4.3E-19 1.5E-23 99.5 6.2 75 1-81 35-109 (192)
79 2a9k_A RAS-related protein RAL 99.8 7.5E-19 2.6E-23 97.2 6.7 77 1-80 24-101 (187)
80 2bov_A RAla, RAS-related prote 99.8 8E-19 2.7E-23 98.6 6.7 77 1-80 20-97 (206)
81 3cbq_A GTP-binding protein REM 99.8 2.8E-19 9.5E-24 100.6 4.7 78 1-80 29-108 (195)
82 3gj0_A GTP-binding nuclear pro 99.8 3.4E-19 1.1E-23 101.5 4.8 78 1-80 21-99 (221)
83 2fh5_B SR-beta, signal recogni 99.8 9.6E-19 3.3E-23 99.1 6.5 77 1-80 13-90 (214)
84 2f7s_A C25KG, RAS-related prot 99.8 1.4E-18 4.8E-23 98.6 7.2 78 1-80 31-119 (217)
85 2iwr_A Centaurin gamma 1; ANK 99.8 1.2E-18 4.1E-23 96.1 6.5 73 1-81 13-85 (178)
86 2gf0_A GTP-binding protein DI- 99.8 9.8E-19 3.3E-23 97.8 6.1 77 1-80 14-91 (199)
87 2h57_A ADP-ribosylation factor 99.8 2.1E-18 7.1E-23 96.2 7.4 75 1-80 27-102 (190)
88 3con_A GTPase NRAS; structural 99.8 2E-18 6.9E-23 96.1 7.3 77 1-80 27-104 (190)
89 2ce2_X GTPase HRAS; signaling 99.8 1.5E-18 5.3E-23 94.1 6.6 77 1-80 9-86 (166)
90 2yc2_C IFT27, small RAB-relate 99.8 3.2E-19 1.1E-23 100.2 3.9 78 1-80 26-108 (208)
91 2atv_A RERG, RAS-like estrogen 99.8 2.7E-18 9.1E-23 96.2 7.1 76 1-80 34-110 (196)
92 3ihw_A Centg3; RAS, centaurin, 99.8 2.2E-18 7.6E-23 96.1 6.6 71 1-80 26-97 (184)
93 2zej_A Dardarin, leucine-rich 99.8 6.5E-19 2.2E-23 98.0 4.3 80 1-81 8-92 (184)
94 2x77_A ADP-ribosylation factor 99.8 1.1E-18 3.9E-23 97.1 5.1 75 1-81 28-102 (189)
95 2f9l_A RAB11B, member RAS onco 99.7 1.1E-17 3.9E-22 94.0 8.8 78 1-80 11-89 (199)
96 4djt_A GTP-binding nuclear pro 99.7 3.5E-18 1.2E-22 97.0 6.5 79 1-80 17-96 (218)
97 1moz_A ARL1, ADP-ribosylation 99.7 1E-18 3.5E-23 96.6 3.9 75 1-81 24-98 (183)
98 3l0i_B RAS-related protein RAB 99.7 3E-19 1E-23 100.4 1.6 79 1-81 39-118 (199)
99 2wkq_A NPH1-1, RAS-related C3 99.7 1.2E-17 4E-22 99.5 7.9 77 1-80 161-238 (332)
100 3lvq_E ARF-GAP with SH3 domain 99.7 1.2E-17 4E-22 104.7 8.0 75 1-81 328-402 (497)
101 3th5_A RAS-related C3 botulinu 99.6 2E-19 6.8E-24 101.4 0.0 78 1-81 36-114 (204)
102 1oix_A RAS-related protein RAB 99.7 2.8E-17 9.5E-22 92.1 8.7 78 1-80 35-113 (191)
103 2lkc_A Translation initiation 99.7 1.5E-17 5.1E-22 91.5 6.3 76 1-80 14-90 (178)
104 3o47_A ADP-ribosylation factor 99.7 2E-17 7E-22 99.6 6.1 75 1-81 171-245 (329)
105 2cjw_A GTP-binding protein GEM 99.7 4.8E-17 1.6E-21 91.3 7.3 78 1-80 12-92 (192)
106 2dyk_A GTP-binding protein; GT 99.7 3.3E-17 1.1E-21 88.8 6.0 78 1-80 7-91 (161)
107 2g3y_A GTP-binding protein GEM 99.7 5.4E-17 1.8E-21 92.6 7.2 78 1-80 43-123 (211)
108 1wf3_A GTP-binding protein; GT 99.7 1E-16 3.6E-21 95.6 6.5 79 1-81 13-99 (301)
109 2gj8_A MNME, tRNA modification 99.7 1.6E-16 5.5E-21 87.7 5.8 79 1-81 10-96 (172)
110 2wji_A Ferrous iron transport 99.7 3.3E-16 1.1E-20 85.8 6.9 76 1-80 9-93 (165)
111 1nrj_B SR-beta, signal recogni 99.7 5.2E-17 1.8E-21 92.1 3.7 72 1-79 18-93 (218)
112 2ged_A SR-beta, signal recogni 99.7 4.5E-17 1.5E-21 90.8 3.3 72 1-79 54-129 (193)
113 2qu8_A Putative nucleolar GTP- 99.6 4.5E-16 1.5E-20 89.1 5.7 77 1-81 35-121 (228)
114 3iev_A GTP-binding protein ERA 99.6 8.6E-16 3E-20 91.8 6.7 79 1-80 16-104 (308)
115 1svi_A GTP-binding protein YSX 99.6 4.4E-16 1.5E-20 86.8 3.9 76 1-81 29-118 (195)
116 2wjg_A FEOB, ferrous iron tran 99.6 2E-15 6.7E-20 83.7 6.1 77 1-80 13-97 (188)
117 3a1s_A Iron(II) transport prot 99.6 4.7E-15 1.6E-19 86.8 7.5 78 1-80 11-95 (258)
118 3dpu_A RAB family protein; roc 99.6 9.4E-16 3.2E-20 97.0 4.2 79 1-80 47-133 (535)
119 1mky_A Probable GTP-binding pr 99.6 2.6E-15 9E-20 93.2 6.0 76 1-80 7-93 (439)
120 3k53_A Ferrous iron transport 99.6 4.2E-15 1.4E-19 87.2 6.4 77 1-80 9-93 (271)
121 3b1v_A Ferrous iron uptake tra 99.6 3.7E-15 1.3E-19 87.9 6.1 75 1-80 9-92 (272)
122 3def_A T7I23.11 protein; chlor 99.6 4.1E-15 1.4E-19 87.0 6.2 78 1-80 42-128 (262)
123 4dhe_A Probable GTP-binding pr 99.6 1E-15 3.5E-20 87.0 3.0 79 1-80 35-127 (223)
124 2hjg_A GTP-binding protein ENG 99.6 1.4E-15 4.7E-20 94.4 3.8 78 1-80 9-94 (436)
125 3iby_A Ferrous iron transport 99.6 7E-15 2.4E-19 86.0 6.3 77 1-80 7-95 (256)
126 3c5h_A Glucocorticoid receptor 99.6 6E-16 2.1E-20 90.3 1.7 76 5-81 38-175 (255)
127 3pqc_A Probable GTP-binding pr 99.5 4.1E-15 1.4E-19 82.6 3.9 75 1-80 29-116 (195)
128 2xtp_A GTPase IMAP family memb 99.5 1.6E-14 5.4E-19 84.1 6.4 79 1-80 28-117 (260)
129 3lxx_A GTPase IMAP family memb 99.5 1.2E-14 4.1E-19 83.8 5.8 78 1-80 35-124 (239)
130 3gee_A MNME, tRNA modification 99.5 4.9E-15 1.7E-19 93.0 4.4 78 1-81 239-325 (476)
131 2hjg_A GTP-binding protein ENG 99.5 1.3E-15 4.3E-20 94.5 1.3 78 1-81 181-270 (436)
132 3i8s_A Ferrous iron transport 99.5 2.4E-14 8.3E-19 84.3 6.5 78 1-80 9-97 (274)
133 4dcu_A GTP-binding protein ENG 99.5 5.7E-15 1.9E-19 92.0 3.1 78 1-80 29-114 (456)
134 3lxw_A GTPase IMAP family memb 99.5 3.9E-14 1.3E-18 82.4 6.4 77 1-79 27-116 (247)
135 3p26_A Elongation factor 1 alp 99.5 2.4E-14 8.2E-19 89.8 5.5 39 41-80 108-146 (483)
136 1h65_A Chloroplast outer envel 99.5 3.9E-14 1.3E-18 83.1 5.7 79 1-80 45-131 (270)
137 3sjy_A Translation initiation 99.5 9.7E-14 3.3E-18 85.4 7.4 79 1-80 14-110 (403)
138 1xzp_A Probable tRNA modificat 99.5 6.5E-15 2.2E-19 92.5 2.2 77 1-81 249-336 (482)
139 4dcu_A GTP-binding protein ENG 99.5 6.6E-15 2.2E-19 91.8 2.1 77 1-80 201-289 (456)
140 1ega_A Protein (GTP-binding pr 99.5 2.6E-14 9E-19 85.2 4.5 78 1-80 14-100 (301)
141 3j2k_7 ERF3, eukaryotic polype 99.5 7E-14 2.4E-18 86.9 5.9 39 41-80 92-130 (439)
142 1zun_B Sulfate adenylate trans 99.5 2.2E-13 7.6E-18 84.5 7.8 39 41-80 101-139 (434)
143 2cxx_A Probable GTP-binding pr 99.5 8.1E-15 2.8E-19 81.2 0.7 72 1-80 7-91 (190)
144 1d2e_A Elongation factor TU (E 99.4 1.4E-13 4.7E-18 84.7 5.7 78 1-80 9-101 (397)
145 2c78_A Elongation factor TU-A; 99.4 8.8E-14 3E-18 85.6 4.8 78 1-80 17-110 (405)
146 1jny_A EF-1-alpha, elongation 99.4 5.5E-14 1.9E-18 87.3 3.8 39 41-80 81-119 (435)
147 3izy_P Translation initiation 99.4 6.7E-15 2.3E-19 93.4 -0.7 77 1-80 10-87 (537)
148 1jal_A YCHF protein; nucleotid 99.4 2.5E-13 8.5E-18 82.9 6.1 77 1-80 8-108 (363)
149 3izq_1 HBS1P, elongation facto 99.4 7.5E-14 2.6E-18 89.8 4.0 39 41-80 242-280 (611)
150 1g7s_A Translation initiation 99.4 1.8E-13 6.3E-18 87.8 5.7 79 1-80 11-105 (594)
151 3tr5_A RF-3, peptide chain rel 99.4 4E-14 1.4E-18 89.8 2.1 39 41-80 79-117 (528)
152 2h5e_A Peptide chain release f 99.4 1.9E-13 6.6E-18 86.7 5.1 39 41-80 79-117 (529)
153 2elf_A Protein translation elo 99.4 1.7E-13 5.8E-18 83.8 4.4 66 1-77 27-92 (370)
154 3geh_A MNME, tRNA modification 99.4 3.4E-14 1.2E-18 88.9 1.2 78 1-81 230-316 (462)
155 1f60_A Elongation factor EEF1A 99.4 3.2E-14 1.1E-18 88.9 0.9 39 41-80 82-120 (458)
156 3cb4_D GTP-binding protein LEP 99.4 5.2E-13 1.8E-17 85.7 6.0 40 40-80 67-106 (599)
157 1r5b_A Eukaryotic peptide chai 99.4 2.8E-13 9.7E-18 84.8 4.5 38 42-80 119-156 (467)
158 2ohf_A Protein OLA1, GTP-bindi 99.4 5.7E-13 2E-17 82.1 5.7 77 1-80 28-128 (396)
159 2qtf_A Protein HFLX, GTP-bindi 99.4 4.7E-13 1.6E-17 81.7 5.3 75 1-81 185-270 (364)
160 2ywe_A GTP-binding protein LEP 99.4 7.9E-13 2.7E-17 84.9 6.5 40 40-80 69-108 (600)
161 3qq5_A Small GTP-binding prote 99.4 8.3E-14 2.9E-18 86.4 1.6 79 1-79 40-124 (423)
162 1s0u_A EIF-2-gamma, translatio 99.4 1E-12 3.4E-17 81.0 5.9 79 1-80 14-116 (408)
163 1mky_A Probable GTP-binding pr 99.4 5.5E-13 1.9E-17 82.8 4.7 77 1-80 186-275 (439)
164 1zo1_I IF2, translation initia 99.4 1.2E-13 4.1E-18 87.2 1.8 76 1-80 10-86 (501)
165 1wxq_A GTP-binding protein; st 99.4 1E-12 3.5E-17 80.9 5.6 80 1-80 6-113 (397)
166 2e87_A Hypothetical protein PH 99.4 2.2E-12 7.5E-17 78.3 6.8 78 1-80 173-258 (357)
167 1n0u_A EF-2, elongation factor 99.4 1.7E-12 5.9E-17 85.9 6.6 39 41-80 95-133 (842)
168 1dar_A EF-G, elongation factor 99.4 6.9E-13 2.4E-17 86.3 4.6 78 1-80 18-112 (691)
169 1wb1_A Translation elongation 99.3 4.8E-13 1.7E-17 84.0 3.7 78 1-80 25-108 (482)
170 1kk1_A EIF2gamma; initiation o 99.3 1.1E-12 3.7E-17 80.9 5.1 36 44-80 83-118 (410)
171 2rdo_7 EF-G, elongation factor 99.3 3.3E-12 1.1E-16 83.3 6.5 38 42-80 80-117 (704)
172 3t5d_A Septin-7; GTP-binding p 99.3 4.9E-12 1.7E-16 74.3 6.4 54 1-55 14-76 (274)
173 1lnz_A SPO0B-associated GTP-bi 99.3 8.2E-13 2.8E-17 80.1 3.1 75 1-80 164-248 (342)
174 2dy1_A Elongation factor G; tr 99.3 3.9E-12 1.3E-16 82.5 5.8 78 1-80 15-109 (665)
175 1jwy_B Dynamin A GTPase domain 99.3 6.2E-12 2.1E-16 74.7 6.2 36 43-79 130-178 (315)
176 2xex_A Elongation factor G; GT 99.3 2E-12 6.8E-17 84.2 4.3 78 1-80 16-110 (693)
177 2qag_A Septin-2, protein NEDD5 99.3 2.9E-12 1E-16 78.1 4.8 70 1-71 43-135 (361)
178 2dby_A GTP-binding protein; GD 99.3 3.8E-12 1.3E-16 77.8 5.1 78 1-80 7-111 (368)
179 3mca_A HBS1, elongation factor 99.3 1.6E-13 5.5E-18 88.0 -1.2 38 42-80 253-290 (592)
180 4fid_A G protein alpha subunit 99.3 3.7E-12 1.3E-16 77.2 4.7 51 27-79 145-195 (340)
181 3avx_A Elongation factor TS, e 99.3 2.3E-12 7.9E-17 87.5 3.8 78 1-80 302-394 (1289)
182 3t34_A Dynamin-related protein 99.3 1.4E-11 4.9E-16 74.8 6.9 37 43-80 135-184 (360)
183 1pui_A ENGB, probable GTP-bind 99.2 3.4E-12 1.2E-16 71.8 3.1 75 1-80 32-120 (210)
184 2qpt_A EH domain-containing pr 99.2 6E-12 2.1E-16 80.2 4.5 35 45-80 155-200 (550)
185 1cip_A Protein (guanine nucleo 99.2 1.4E-11 4.8E-16 75.0 5.6 51 28-80 178-228 (353)
186 3ohm_A Guanine nucleotide-bind 99.2 7.4E-12 2.5E-16 75.5 4.2 51 27-79 151-201 (327)
187 2aka_B Dynamin-1; fusion prote 99.2 3E-11 1E-15 71.3 6.3 37 43-80 124-174 (299)
188 1azs_C GS-alpha; complex (lyas 99.2 4.1E-11 1.4E-15 74.0 5.8 49 30-80 204-252 (402)
189 4a9a_A Ribosome-interacting GT 99.2 2.5E-11 8.4E-16 74.5 4.0 78 1-81 78-162 (376)
190 2xtz_A Guanine nucleotide-bind 99.1 1.2E-10 4.2E-15 70.9 4.3 37 42-79 181-217 (354)
191 1zcb_A G alpha I/13; GTP-bindi 99.1 1.5E-10 5.1E-15 70.7 4.7 50 29-80 187-236 (362)
192 2j69_A Bacterial dynamin-like 99.1 3.4E-10 1.2E-14 73.9 6.5 36 44-80 174-212 (695)
193 1ni3_A YCHF GTPase, YCHF GTP-b 99.0 5.1E-10 1.8E-14 69.0 5.0 77 1-80 26-127 (392)
194 2qnr_A Septin-2, protein NEDD5 99.0 2.7E-10 9.4E-15 67.9 2.6 60 1-60 24-99 (301)
195 1udx_A The GTP-binding protein 98.9 3.3E-09 1.1E-13 65.9 6.1 74 1-79 163-246 (416)
196 2qag_C Septin-7; cell cycle, c 98.9 3.5E-09 1.2E-13 65.8 5.5 57 1-57 37-101 (418)
197 2x2e_A Dynamin-1; nitration, h 98.9 2.9E-09 1E-13 64.6 4.6 18 1-18 37-54 (353)
198 3vqt_A RF-3, peptide chain rel 98.8 9.2E-09 3.1E-13 65.7 4.9 39 41-80 97-135 (548)
199 3cnl_A YLQF, putative uncharac 98.6 1E-08 3.5E-13 60.2 1.9 53 1-57 105-157 (262)
200 2wsm_A Hydrogenase expression/ 98.6 6.4E-08 2.2E-12 54.7 4.7 34 43-80 108-141 (221)
201 2www_A Methylmalonic aciduria 98.6 3E-08 1E-12 60.2 2.6 35 42-80 165-199 (349)
202 2p67_A LAO/AO transport system 98.6 1.5E-08 5.2E-13 61.3 1.2 34 43-80 148-181 (341)
203 3p32_A Probable GTPase RV1496/ 98.5 6.5E-08 2.2E-12 58.8 3.9 35 42-80 170-204 (355)
204 3j25_A Tetracycline resistance 98.5 2.7E-08 9.3E-13 64.5 1.7 39 41-80 64-102 (638)
205 1puj_A YLQF, conserved hypothe 98.5 7.1E-08 2.4E-12 57.1 3.2 51 1-55 126-176 (282)
206 4fn5_A EF-G 1, elongation fact 98.5 3.9E-07 1.4E-11 59.7 6.4 38 42-80 83-120 (709)
207 1u0l_A Probable GTPase ENGC; p 98.4 2.7E-07 9.1E-12 55.0 4.1 34 45-81 64-97 (301)
208 3l82_B F-box only protein 4; T 98.3 2.2E-07 7.5E-12 53.4 2.5 30 51-81 109-138 (227)
209 2qm8_A GTPase/ATPase; G protei 98.3 2.1E-07 7.3E-12 56.3 2.1 34 42-79 146-179 (337)
210 2hf9_A Probable hydrogenase ni 98.3 8.4E-08 2.9E-12 54.4 0.2 18 1-18 44-61 (226)
211 3ec1_A YQEH GTPase; atnos1, at 98.3 2.5E-06 8.4E-11 52.2 6.4 73 1-78 168-255 (369)
212 1yrb_A ATP(GTP)binding protein 98.3 1.6E-07 5.3E-12 54.4 1.0 35 44-79 109-148 (262)
213 1bif_A 6-phosphofructo-2-kinas 98.1 3.8E-08 1.3E-12 61.7 -4.6 75 1-80 45-132 (469)
214 3zvr_A Dynamin-1; hydrolase, D 98.1 8.2E-06 2.8E-10 54.2 6.0 18 1-18 57-74 (772)
215 3sop_A Neuronal-specific septi 98.1 2.1E-06 7.2E-11 50.6 2.6 21 1-21 8-28 (270)
216 1f5n_A Interferon-induced guan 98.0 4.2E-06 1.5E-10 54.1 3.9 57 1-57 44-104 (592)
217 3l2o_B F-box only protein 4; s 98.0 9.6E-07 3.3E-11 52.9 0.9 30 51-81 194-223 (312)
218 3h2y_A GTPase family protein; 98.0 3.4E-06 1.2E-10 51.6 2.6 74 1-78 166-254 (368)
219 3tif_A Uncharacterized ABC tra 97.8 9.3E-06 3.2E-10 46.9 2.2 22 1-22 37-58 (235)
220 2j37_W Signal recognition part 97.8 3.4E-05 1.1E-09 49.1 4.6 39 42-80 182-225 (504)
221 1kgd_A CASK, peripheral plasma 97.8 1.1E-05 3.6E-10 44.6 1.8 20 1-20 11-30 (180)
222 2onk_A Molybdate/tungstate ABC 97.8 1.4E-05 4.9E-10 46.3 2.4 22 1-22 30-51 (240)
223 1tq4_A IIGP1, interferon-induc 97.8 2.1E-05 7.2E-10 49.0 3.3 22 1-22 75-96 (413)
224 2pcj_A ABC transporter, lipopr 97.7 1.1E-05 3.8E-10 46.2 1.8 22 1-22 36-57 (224)
225 1s96_A Guanylate kinase, GMP k 97.7 1.3E-05 4.3E-10 45.9 1.9 21 1-21 22-42 (219)
226 1b0u_A Histidine permease; ABC 97.7 1.5E-05 5.2E-10 46.7 2.3 22 1-22 38-59 (262)
227 1lvg_A Guanylate kinase, GMP k 97.7 1.2E-05 4E-10 45.1 1.6 19 1-19 10-28 (198)
228 1g6h_A High-affinity branched- 97.7 1.7E-05 5.7E-10 46.3 2.2 22 1-22 39-60 (257)
229 1znw_A Guanylate kinase, GMP k 97.7 1.2E-05 4.2E-10 45.2 1.6 19 1-19 26-44 (207)
230 1sgw_A Putative ABC transporte 97.7 1.9E-05 6.4E-10 45.1 2.3 22 1-22 41-62 (214)
231 3gfo_A Cobalt import ATP-bindi 97.7 1.8E-05 6.2E-10 46.8 2.3 22 1-22 40-61 (275)
232 2pze_A Cystic fibrosis transme 97.7 1.9E-05 6.4E-10 45.4 2.3 22 1-22 40-61 (229)
233 1ye8_A Protein THEP1, hypothet 97.7 1.4E-05 4.7E-10 44.4 1.6 19 1-19 6-24 (178)
234 2ff7_A Alpha-hemolysin translo 97.7 1.9E-05 6.5E-10 45.9 2.2 22 1-22 41-62 (247)
235 2olj_A Amino acid ABC transpor 97.7 2E-05 6.7E-10 46.3 2.3 22 1-22 56-77 (263)
236 4g1u_C Hemin import ATP-bindin 97.7 2E-05 6.9E-10 46.3 2.3 22 1-22 43-64 (266)
237 1mv5_A LMRA, multidrug resista 97.7 2.2E-05 7.4E-10 45.5 2.4 22 1-22 34-55 (243)
238 1ji0_A ABC transporter; ATP bi 97.7 2E-05 6.9E-10 45.6 2.2 22 1-22 38-59 (240)
239 2ihy_A ABC transporter, ATP-bi 97.7 2.1E-05 7.2E-10 46.5 2.3 22 1-22 53-74 (279)
240 1vpl_A ABC transporter, ATP-bi 97.7 2.2E-05 7.4E-10 46.0 2.3 22 1-22 47-68 (256)
241 1ex7_A Guanylate kinase; subst 97.6 1.9E-05 6.5E-10 44.3 1.8 21 1-21 7-27 (186)
242 3a00_A Guanylate kinase, GMP k 97.6 1.4E-05 4.8E-10 44.3 1.2 20 1-20 7-26 (186)
243 2ixe_A Antigen peptide transpo 97.6 2.4E-05 8.4E-10 46.0 2.2 22 1-22 51-72 (271)
244 3tr0_A Guanylate kinase, GMP k 97.6 2E-05 6.7E-10 43.9 1.6 19 1-19 13-31 (205)
245 2qi9_C Vitamin B12 import ATP- 97.6 2.5E-05 8.6E-10 45.5 2.1 22 1-22 32-53 (249)
246 2nq2_C Hypothetical ABC transp 97.6 2.7E-05 9.2E-10 45.5 2.2 22 1-22 37-58 (253)
247 3q5d_A Atlastin-1; G protein, 97.6 7.1E-05 2.4E-09 47.1 4.2 55 1-56 73-152 (447)
248 1z6g_A Guanylate kinase; struc 97.6 2E-05 6.7E-10 44.9 1.6 19 1-19 29-47 (218)
249 1z47_A CYSA, putative ABC-tran 97.6 2.9E-05 9.8E-10 47.5 2.4 22 1-22 47-68 (355)
250 3fvq_A Fe(3+) IONS import ATP- 97.6 2.2E-05 7.6E-10 48.1 1.9 22 1-22 36-57 (359)
251 2yz2_A Putative ABC transporte 97.6 2.8E-05 9.5E-10 45.6 2.2 22 1-22 39-60 (266)
252 2it1_A 362AA long hypothetical 97.6 3.1E-05 1.1E-09 47.5 2.4 22 1-22 35-56 (362)
253 2yyz_A Sugar ABC transporter, 97.6 3.2E-05 1.1E-09 47.4 2.4 22 1-22 35-56 (359)
254 3rlf_A Maltose/maltodextrin im 97.6 3.2E-05 1.1E-09 47.7 2.4 22 1-22 35-56 (381)
255 1g29_1 MALK, maltose transport 97.6 3.3E-05 1.1E-09 47.5 2.4 22 1-22 35-56 (372)
256 1v43_A Sugar-binding transport 97.6 3.4E-05 1.2E-09 47.4 2.4 22 1-22 43-64 (372)
257 2cbz_A Multidrug resistance-as 97.6 1.7E-05 6E-10 45.8 1.1 21 1-21 37-57 (237)
258 1htw_A HI0065; nucleotide-bind 97.6 2.8E-05 9.4E-10 42.5 1.8 19 1-19 39-57 (158)
259 2qag_B Septin-6, protein NEDD5 97.6 0.00012 4.1E-09 45.8 4.7 19 1-19 48-66 (427)
260 3d31_A Sulfate/molybdate ABC t 97.6 2.8E-05 9.5E-10 47.4 1.8 22 1-22 32-53 (348)
261 3tau_A Guanylate kinase, GMP k 97.6 3.5E-05 1.2E-09 43.4 2.1 21 1-21 14-34 (208)
262 1u0l_A Probable GTPase ENGC; p 97.5 3.3E-05 1.1E-09 46.0 2.0 22 1-22 175-196 (301)
263 3tui_C Methionine import ATP-b 97.5 4.3E-05 1.5E-09 46.9 2.4 22 1-22 60-81 (366)
264 2ghi_A Transport protein; mult 97.5 4.2E-05 1.4E-09 44.8 2.1 20 1-20 52-71 (260)
265 2pjz_A Hypothetical protein ST 97.5 4.3E-05 1.5E-09 44.9 2.1 21 1-22 36-56 (263)
266 3ney_A 55 kDa erythrocyte memb 97.5 3.8E-05 1.3E-09 43.5 1.7 20 1-20 25-44 (197)
267 2d2e_A SUFC protein; ABC-ATPas 97.5 4E-05 1.4E-09 44.6 1.7 18 1-18 35-52 (250)
268 1zp6_A Hypothetical protein AT 97.5 3.4E-05 1.2E-09 42.5 1.3 18 1-18 15-32 (191)
269 1oxx_K GLCV, glucose, ABC tran 97.5 2.8E-05 9.6E-10 47.5 1.1 22 1-22 37-58 (353)
270 2zu0_C Probable ATP-dependent 97.5 4.2E-05 1.4E-09 44.9 1.8 18 1-18 52-69 (267)
271 3c8u_A Fructokinase; YP_612366 97.5 3.4E-05 1.2E-09 43.4 1.3 19 1-19 28-46 (208)
272 3b85_A Phosphate starvation-in 97.4 3.5E-05 1.2E-09 43.8 1.2 18 1-18 28-45 (208)
273 4gp7_A Metallophosphoesterase; 97.4 3.9E-05 1.3E-09 42.1 1.3 14 1-14 15-28 (171)
274 3nh6_A ATP-binding cassette SU 97.4 4.3E-05 1.5E-09 45.8 1.5 22 1-22 86-107 (306)
275 2yv5_A YJEQ protein; hydrolase 97.4 6.6E-05 2.3E-09 44.8 2.3 20 1-21 171-190 (302)
276 2j41_A Guanylate kinase; GMP, 97.4 6.1E-05 2.1E-09 41.9 2.1 19 1-19 12-30 (207)
277 2rcn_A Probable GTPase ENGC; Y 97.4 7.1E-05 2.4E-09 45.8 2.4 20 1-20 221-240 (358)
278 2bbs_A Cystic fibrosis transme 97.4 4.2E-05 1.4E-09 45.5 1.1 22 1-22 70-91 (290)
279 1kag_A SKI, shikimate kinase I 97.4 8.1E-05 2.8E-09 40.4 1.9 20 1-20 10-29 (173)
280 2bdt_A BH3686; alpha-beta prot 97.3 7.3E-05 2.5E-09 41.2 1.6 17 1-17 8-24 (189)
281 1lw7_A Transcriptional regulat 97.3 7.5E-05 2.6E-09 45.4 1.7 22 1-22 176-197 (365)
282 3lnc_A Guanylate kinase, GMP k 97.3 6E-05 2.1E-09 43.0 1.1 19 1-19 33-52 (231)
283 3ec2_A DNA replication protein 97.3 0.00011 3.9E-09 40.2 2.0 19 1-19 44-62 (180)
284 2i3b_A HCR-ntpase, human cance 97.3 8.7E-05 3E-09 41.6 1.6 19 1-19 7-25 (189)
285 3gd7_A Fusion complex of cysti 97.3 6.7E-05 2.3E-09 46.4 1.2 19 1-19 53-71 (390)
286 2ehv_A Hypothetical protein PH 97.3 9E-05 3.1E-09 42.3 1.6 16 1-16 36-51 (251)
287 2qor_A Guanylate kinase; phosp 97.3 9E-05 3.1E-09 41.5 1.6 20 1-20 18-37 (204)
288 4a74_A DNA repair and recombin 97.3 7.6E-05 2.6E-09 42.1 1.3 18 1-18 31-48 (231)
289 4eun_A Thermoresistant glucoki 97.3 9.9E-05 3.4E-09 41.2 1.6 18 1-18 35-52 (200)
290 3asz_A Uridine kinase; cytidin 97.3 7.6E-05 2.6E-09 41.8 1.1 19 1-19 12-30 (211)
291 1yqt_A RNAse L inhibitor; ATP- 97.2 0.00015 5E-09 46.5 2.4 22 1-22 53-74 (538)
292 2eyu_A Twitching motility prot 97.2 0.0001 3.6E-09 43.1 1.6 19 1-19 31-49 (261)
293 3ozx_A RNAse L inhibitor; ATP 97.2 0.00014 4.8E-09 46.6 2.2 22 1-22 31-52 (538)
294 3aez_A Pantothenate kinase; tr 97.2 0.00011 3.8E-09 44.1 1.6 19 1-19 96-114 (312)
295 1t9h_A YLOQ, probable GTPase E 97.2 2.6E-05 9E-10 46.8 -1.1 20 1-20 179-198 (307)
296 3szr_A Interferon-induced GTP- 97.2 0.00017 5.8E-09 46.8 2.5 21 1-21 51-71 (608)
297 2v9p_A Replication protein E1; 97.2 0.00011 3.8E-09 44.1 1.5 19 1-19 132-150 (305)
298 2bbw_A Adenylate kinase 4, AK4 97.2 0.00012 4.2E-09 42.1 1.6 16 1-16 33-48 (246)
299 3j16_B RLI1P; ribosome recycli 97.2 0.00017 5.9E-09 46.9 2.4 22 1-22 109-130 (608)
300 3uie_A Adenylyl-sulfate kinase 97.2 0.00013 4.3E-09 40.8 1.6 18 1-18 31-48 (200)
301 2gza_A Type IV secretion syste 97.1 0.00016 5.5E-09 44.1 1.8 22 1-22 181-202 (361)
302 1knq_A Gluconate kinase; ALFA/ 97.1 0.00016 5.6E-09 39.3 1.6 17 1-17 14-30 (175)
303 1rj9_A FTSY, signal recognitio 97.1 9.3E-05 3.2E-09 44.3 0.6 18 1-18 108-125 (304)
304 3b5x_A Lipid A export ATP-bind 97.1 0.00023 7.8E-09 45.8 2.4 22 1-22 375-396 (582)
305 3bk7_A ABC transporter ATP-bin 97.1 0.00022 7.4E-09 46.4 2.2 22 1-22 123-144 (607)
306 3kb2_A SPBC2 prophage-derived 97.1 0.00016 5.6E-09 39.0 1.4 18 1-18 7-24 (173)
307 1qhx_A CPT, protein (chloramph 97.1 0.00025 8.4E-09 38.6 2.1 20 1-20 9-28 (178)
308 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00016 5.6E-09 43.6 1.5 22 1-22 177-198 (330)
309 2obl_A ESCN; ATPase, hydrolase 97.1 0.00018 6.3E-09 43.8 1.5 22 1-22 77-98 (347)
310 2yl4_A ATP-binding cassette SU 97.1 0.00019 6.6E-09 46.3 1.6 22 1-22 376-397 (595)
311 3b60_A Lipid A export ATP-bind 97.1 0.0002 6.9E-09 46.1 1.7 22 1-22 375-396 (582)
312 2jeo_A Uridine-cytidine kinase 97.1 0.00021 7.1E-09 41.2 1.6 18 1-18 31-48 (245)
313 2x8a_A Nuclear valosin-contain 97.1 0.00023 7.8E-09 41.9 1.8 21 1-21 50-70 (274)
314 2dpy_A FLII, flagellum-specifi 97.0 0.00022 7.4E-09 44.7 1.5 22 1-22 163-184 (438)
315 3ozx_A RNAse L inhibitor; ATP 97.0 0.00033 1.1E-08 44.9 2.4 22 1-22 300-321 (538)
316 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00017 5.9E-09 45.4 1.1 20 1-20 144-163 (460)
317 3b9q_A Chloroplast SRP recepto 97.0 0.00024 8.2E-09 42.5 1.6 18 1-18 106-123 (302)
318 3lw7_A Adenylate kinase relate 97.0 0.00026 8.7E-09 38.1 1.6 15 1-15 7-21 (179)
319 2kjq_A DNAA-related protein; s 97.0 0.00016 5.6E-09 38.9 0.8 19 1-19 42-60 (149)
320 3qf4_B Uncharacterized ABC tra 97.0 0.00025 8.7E-09 45.8 1.8 22 1-22 387-408 (598)
321 3euj_A Chromosome partition pr 97.0 0.00021 7.3E-09 45.3 1.4 18 1-18 35-52 (483)
322 3kta_A Chromosome segregation 97.0 0.0002 6.8E-09 39.2 1.1 17 1-17 32-48 (182)
323 1ixz_A ATP-dependent metallopr 97.0 0.00026 8.9E-09 40.8 1.6 20 1-20 55-74 (254)
324 3bk7_A ABC transporter ATP-bin 97.0 0.00039 1.3E-08 45.2 2.5 22 1-22 388-409 (607)
325 3vaa_A Shikimate kinase, SK; s 97.0 0.00026 8.9E-09 39.5 1.5 18 1-18 31-48 (199)
326 1cke_A CK, MSSA, protein (cyti 97.0 0.00028 9.6E-09 39.8 1.6 18 1-18 11-28 (227)
327 1np6_A Molybdopterin-guanine d 97.0 0.00029 1E-08 39.0 1.6 18 1-18 12-29 (174)
328 1in4_A RUVB, holliday junction 97.0 0.00026 8.8E-09 42.6 1.5 19 1-19 57-75 (334)
329 2f1r_A Molybdopterin-guanine d 97.0 0.0001 3.5E-09 40.7 -0.2 19 1-19 8-26 (171)
330 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00041 1.4E-08 44.5 2.4 22 1-22 318-339 (538)
331 3t61_A Gluconokinase; PSI-biol 97.0 0.00027 9.1E-09 39.4 1.4 18 1-18 24-41 (202)
332 1qhl_A Protein (cell division 96.9 0.00017 5.7E-09 41.6 0.5 18 1-18 33-50 (227)
333 3e70_C DPA, signal recognition 96.9 0.00031 1.1E-08 42.5 1.6 18 1-18 135-152 (328)
334 3dm5_A SRP54, signal recogniti 96.9 0.00077 2.6E-08 42.4 3.4 36 44-79 183-223 (443)
335 4a82_A Cystic fibrosis transme 96.9 0.0002 6.7E-09 46.1 0.7 22 1-22 373-394 (578)
336 3jvv_A Twitching mobility prot 96.9 0.00033 1.1E-08 42.8 1.6 20 1-20 129-148 (356)
337 1nij_A Hypothetical protein YJ 96.9 0.00041 1.4E-08 41.6 1.9 19 1-19 10-28 (318)
338 1jbk_A CLPB protein; beta barr 96.9 0.00042 1.4E-08 37.5 1.8 18 1-18 49-66 (195)
339 1sq5_A Pantothenate kinase; P- 96.9 0.00028 9.7E-09 42.1 1.1 19 1-19 86-104 (308)
340 3tqc_A Pantothenate kinase; bi 96.9 0.00037 1.3E-08 42.1 1.6 18 1-18 98-115 (321)
341 1jjv_A Dephospho-COA kinase; P 96.9 0.00042 1.4E-08 38.7 1.7 17 1-17 8-24 (206)
342 1iy2_A ATP-dependent metallopr 96.9 0.00039 1.3E-08 40.6 1.6 20 1-20 79-98 (278)
343 3j16_B RLI1P; ribosome recycli 96.9 0.00054 1.8E-08 44.6 2.4 23 1-23 384-406 (608)
344 2jaq_A Deoxyguanosine kinase; 96.9 0.00032 1.1E-08 38.8 1.2 18 1-18 6-23 (205)
345 2oap_1 GSPE-2, type II secreti 96.9 0.00059 2E-08 43.5 2.5 22 1-22 266-287 (511)
346 1ly1_A Polynucleotide kinase; 96.9 0.00053 1.8E-08 37.2 2.0 17 1-17 8-24 (181)
347 3qf4_A ABC transporter, ATP-bi 96.8 0.00031 1.1E-08 45.4 1.1 22 1-22 375-396 (587)
348 2yhs_A FTSY, cell division pro 96.8 0.00043 1.5E-08 44.2 1.6 18 1-18 299-316 (503)
349 2og2_A Putative signal recogni 96.8 0.00044 1.5E-08 42.4 1.6 18 1-18 163-180 (359)
350 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00045 1.5E-08 38.8 1.6 16 1-16 29-44 (235)
351 4e22_A Cytidylate kinase; P-lo 96.8 0.00046 1.6E-08 40.0 1.6 16 1-16 33-48 (252)
352 2vp4_A Deoxynucleoside kinase; 96.8 0.00029 1E-08 40.2 0.8 18 1-18 26-43 (230)
353 2ewv_A Twitching motility prot 96.8 0.00045 1.5E-08 42.4 1.5 20 1-20 142-161 (372)
354 2iw3_A Elongation factor 3A; a 96.8 0.00058 2E-08 46.7 2.1 22 1-22 705-726 (986)
355 1kht_A Adenylate kinase; phosp 96.8 0.00066 2.3E-08 37.1 2.0 18 1-18 9-26 (192)
356 1p9r_A General secretion pathw 96.8 0.00045 1.5E-08 43.1 1.4 21 1-21 173-193 (418)
357 2qt1_A Nicotinamide riboside k 96.8 0.00049 1.7E-08 38.4 1.4 19 1-19 27-45 (207)
358 2if2_A Dephospho-COA kinase; a 96.7 0.00045 1.5E-08 38.4 1.1 17 1-17 7-23 (204)
359 1nks_A Adenylate kinase; therm 96.7 0.00055 1.9E-08 37.5 1.3 19 1-19 7-25 (194)
360 1rz3_A Hypothetical protein rb 96.7 0.0005 1.7E-08 38.5 1.1 17 1-17 28-44 (201)
361 1gvn_B Zeta; postsegregational 96.7 0.00071 2.4E-08 40.1 1.6 19 1-19 39-57 (287)
362 3trf_A Shikimate kinase, SK; a 96.6 0.00072 2.5E-08 37.0 1.6 18 1-18 11-28 (185)
363 2rhm_A Putative kinase; P-loop 96.6 0.00054 1.9E-08 37.6 1.1 18 1-18 11-28 (193)
364 3cm0_A Adenylate kinase; ATP-b 96.6 0.00077 2.6E-08 36.9 1.6 17 1-17 10-26 (186)
365 1via_A Shikimate kinase; struc 96.6 0.00071 2.4E-08 36.8 1.5 18 1-18 10-27 (175)
366 2v54_A DTMP kinase, thymidylat 96.6 0.0011 3.7E-08 36.7 2.2 19 1-19 10-28 (204)
367 1n0w_A DNA repair protein RAD5 96.6 0.00077 2.6E-08 38.2 1.6 17 1-17 30-46 (243)
368 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.00082 2.8E-08 36.1 1.6 15 1-15 29-43 (149)
369 3bos_A Putative DNA replicatio 96.6 0.00085 2.9E-08 37.8 1.8 18 1-18 58-75 (242)
370 2pez_A Bifunctional 3'-phospho 96.6 0.00083 2.8E-08 36.7 1.6 18 1-18 11-28 (179)
371 2p65_A Hypothetical protein PF 96.6 0.0006 2.1E-08 36.9 1.0 19 1-19 49-67 (187)
372 1njg_A DNA polymerase III subu 96.6 0.00092 3.1E-08 37.4 1.8 18 1-18 51-68 (250)
373 1lv7_A FTSH; alpha/beta domain 96.6 0.001 3.5E-08 38.3 2.0 19 1-19 51-69 (257)
374 3dl0_A Adenylate kinase; phosp 96.6 0.00082 2.8E-08 37.7 1.6 19 1-19 6-24 (216)
375 3iij_A Coilin-interacting nucl 96.6 0.00085 2.9E-08 36.6 1.6 18 1-18 17-34 (180)
376 1cr0_A DNA primase/helicase; R 96.6 0.00064 2.2E-08 40.0 1.1 18 1-18 41-58 (296)
377 2plr_A DTMP kinase, probable t 96.6 0.00083 2.8E-08 37.3 1.5 19 1-19 10-28 (213)
378 2w58_A DNAI, primosome compone 96.5 0.0011 3.8E-08 36.8 2.0 19 1-19 60-78 (202)
379 2yvu_A Probable adenylyl-sulfa 96.5 0.00094 3.2E-08 36.7 1.6 18 1-18 19-36 (186)
380 1odf_A YGR205W, hypothetical 3 96.5 0.00093 3.2E-08 39.7 1.6 19 1-19 37-55 (290)
381 2cvh_A DNA repair and recombin 96.5 0.00094 3.2E-08 37.3 1.6 17 1-17 26-42 (220)
382 1xjc_A MOBB protein homolog; s 96.5 0.001 3.5E-08 36.8 1.6 17 1-17 10-26 (169)
383 3h4m_A Proteasome-activating n 96.5 0.0011 3.7E-08 38.7 1.8 20 1-20 57-76 (285)
384 2chg_A Replication factor C sm 96.5 0.0011 3.9E-08 36.6 1.8 18 1-18 44-61 (226)
385 2z0h_A DTMP kinase, thymidylat 96.5 0.0014 4.7E-08 36.1 1.9 18 1-18 6-23 (197)
386 1l8q_A Chromosomal replication 96.5 0.0013 4.3E-08 39.2 1.9 19 1-19 43-61 (324)
387 3b9p_A CG5977-PA, isoform A; A 96.5 0.0012 4.2E-08 38.7 1.8 19 1-19 60-78 (297)
388 1zd8_A GTP:AMP phosphotransfer 96.4 0.00087 3E-08 38.0 1.1 19 1-19 13-31 (227)
389 2p5t_B PEZT; postsegregational 96.4 0.00066 2.2E-08 39.3 0.6 19 1-19 38-56 (253)
390 2yv5_A YJEQ protein; hydrolase 96.4 0.0026 9.1E-08 37.9 3.2 40 41-81 47-92 (302)
391 2ze6_A Isopentenyl transferase 96.4 0.0011 3.7E-08 38.5 1.5 18 1-18 7-24 (253)
392 1y63_A LMAJ004144AAA protein; 96.4 0.0011 3.7E-08 36.5 1.4 18 1-18 16-33 (184)
393 3t15_A Ribulose bisphosphate c 96.4 0.001 3.5E-08 39.4 1.3 18 2-19 43-60 (293)
394 1gtv_A TMK, thymidylate kinase 96.4 0.00036 1.2E-08 39.0 -0.7 19 1-19 6-24 (214)
395 1fnn_A CDC6P, cell division co 96.4 0.0014 4.7E-08 39.5 1.8 20 1-20 50-69 (389)
396 1svm_A Large T antigen; AAA+ f 96.4 0.0013 4.4E-08 40.5 1.6 18 1-18 175-192 (377)
397 4ido_A Atlastin-1; GTPase, GTP 96.4 0.0051 1.8E-07 38.9 4.2 56 1-57 73-153 (457)
398 3fb4_A Adenylate kinase; psych 96.4 0.0017 5.8E-08 36.4 1.9 18 1-18 6-23 (216)
399 2vli_A Antibiotic resistance p 96.4 0.0012 4E-08 36.0 1.2 19 1-19 11-29 (183)
400 2qen_A Walker-type ATPase; unk 96.4 0.0015 5.3E-08 38.7 1.8 18 1-18 37-54 (350)
401 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.0017 5.8E-08 37.2 2.0 19 1-19 45-63 (262)
402 2r62_A Cell division protease 96.3 0.0017 5.8E-08 37.5 1.9 18 1-18 50-67 (268)
403 3nwj_A ATSK2; P loop, shikimat 96.3 0.0014 4.8E-08 38.2 1.6 17 1-17 54-70 (250)
404 2pbr_A DTMP kinase, thymidylat 96.3 0.0018 6.3E-08 35.4 2.0 18 1-18 6-23 (195)
405 3cf0_A Transitional endoplasmi 96.3 0.0017 5.6E-08 38.5 1.8 20 1-20 55-74 (301)
406 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0014 5E-08 40.0 1.6 15 1-15 29-43 (365)
407 1m7g_A Adenylylsulfate kinase; 96.3 0.0015 5.1E-08 36.7 1.6 18 1-18 31-48 (211)
408 3n70_A Transport activator; si 96.3 0.0028 9.5E-08 33.6 2.6 19 1-19 30-48 (145)
409 3g5u_A MCG1178, multidrug resi 96.3 0.0014 4.8E-08 45.8 1.7 22 1-22 422-443 (1284)
410 1e6c_A Shikimate kinase; phosp 96.3 0.0019 6.6E-08 34.8 1.9 18 1-18 8-25 (173)
411 4eaq_A DTMP kinase, thymidylat 96.3 0.0016 5.3E-08 37.4 1.6 20 1-20 32-51 (229)
412 2qby_A CDC6 homolog 1, cell di 96.3 0.0014 4.9E-08 39.3 1.5 18 1-18 51-68 (386)
413 1sxj_E Activator 1 40 kDa subu 96.3 0.0014 4.8E-08 39.2 1.4 18 1-18 42-59 (354)
414 1ukz_A Uridylate kinase; trans 96.3 0.002 6.9E-08 35.7 1.9 18 1-18 21-38 (203)
415 2cdn_A Adenylate kinase; phosp 96.3 0.0017 5.9E-08 36.0 1.6 18 1-18 26-43 (201)
416 1tev_A UMP-CMP kinase; ploop, 96.3 0.0022 7.4E-08 35.1 2.0 17 1-17 9-25 (196)
417 4f4c_A Multidrug resistance pr 96.3 0.0016 5.4E-08 45.7 1.7 23 1-23 450-472 (1321)
418 2pt5_A Shikimate kinase, SK; a 96.3 0.0022 7.4E-08 34.5 2.0 18 1-18 6-23 (168)
419 2c95_A Adenylate kinase 1; tra 96.3 0.0013 4.6E-08 36.1 1.1 18 1-18 15-32 (196)
420 2v1u_A Cell division control p 96.2 0.0018 6.1E-08 38.9 1.7 19 1-19 50-68 (387)
421 2iw3_A Elongation factor 3A; a 96.2 0.0016 5.4E-08 44.6 1.6 17 1-17 467-483 (986)
422 1sxj_C Activator 1 40 kDa subu 96.2 0.0021 7E-08 38.6 1.9 18 1-18 52-69 (340)
423 3qks_A DNA double-strand break 96.2 0.0019 6.4E-08 36.3 1.6 15 1-15 29-43 (203)
424 1vht_A Dephospho-COA kinase; s 96.2 0.0024 8.1E-08 35.9 2.0 17 1-17 10-26 (218)
425 1zak_A Adenylate kinase; ATP:A 96.2 0.0014 4.9E-08 37.0 1.1 18 1-18 11-28 (222)
426 1aky_A Adenylate kinase; ATP:A 96.2 0.002 6.7E-08 36.3 1.6 18 1-18 10-27 (220)
427 2wwf_A Thymidilate kinase, put 96.2 0.0018 6.1E-08 36.1 1.4 17 1-17 16-32 (212)
428 1ofh_A ATP-dependent HSL prote 96.2 0.0024 8.3E-08 37.4 2.0 19 1-19 56-74 (310)
429 2xb4_A Adenylate kinase; ATP-b 96.2 0.0021 7.2E-08 36.5 1.6 18 1-18 6-23 (223)
430 2iyv_A Shikimate kinase, SK; t 96.2 0.0021 7.2E-08 35.1 1.6 17 1-17 8-24 (184)
431 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0026 8.9E-08 37.0 2.0 18 1-18 10-27 (260)
432 3sr0_A Adenylate kinase; phosp 96.1 0.0015 5.1E-08 37.0 1.0 19 1-19 6-24 (206)
433 2bwj_A Adenylate kinase 5; pho 96.1 0.002 6.9E-08 35.4 1.5 18 1-18 18-35 (199)
434 1nlf_A Regulatory protein REPA 96.1 0.0016 5.6E-08 38.1 1.1 16 1-16 36-51 (279)
435 2fna_A Conserved hypothetical 96.1 0.0018 6.3E-08 38.4 1.3 17 2-18 37-53 (357)
436 1d2n_A N-ethylmaleimide-sensit 96.1 0.0027 9.3E-08 36.9 2.0 18 1-18 70-87 (272)
437 1nn5_A Similar to deoxythymidy 96.1 0.0022 7.4E-08 35.7 1.4 17 1-17 15-31 (215)
438 1w5s_A Origin recognition comp 96.1 0.0027 9.2E-08 38.6 1.9 18 1-18 58-75 (412)
439 3cr8_A Sulfate adenylyltranfer 96.1 0.0012 4.2E-08 42.5 0.4 19 1-19 375-393 (552)
440 3m6a_A ATP-dependent protease 96.1 0.0021 7.2E-08 41.2 1.5 19 1-19 114-132 (543)
441 1sxj_D Activator 1 41 kDa subu 96.1 0.0028 9.7E-08 37.8 2.0 18 1-18 64-81 (353)
442 2o5v_A DNA replication and rep 96.0 0.0025 8.5E-08 39.1 1.6 16 1-16 32-47 (359)
443 3g5u_A MCG1178, multidrug resi 96.0 0.0029 1E-07 44.3 2.1 22 1-22 1065-1086(1284)
444 3tlx_A Adenylate kinase 2; str 96.0 0.0026 8.8E-08 36.6 1.6 18 1-18 35-52 (243)
445 1qf9_A UMP/CMP kinase, protein 96.0 0.0024 8.2E-08 34.9 1.4 18 1-18 12-29 (194)
446 1uf9_A TT1252 protein; P-loop, 96.0 0.0021 7.3E-08 35.4 1.2 18 1-18 14-31 (203)
447 1xwi_A SKD1 protein; VPS4B, AA 96.0 0.0029 9.9E-08 37.9 1.8 19 1-19 51-69 (322)
448 1ltq_A Polynucleotide kinase; 96.0 0.0027 9.2E-08 37.3 1.6 18 1-18 8-25 (301)
449 4b4t_K 26S protease regulatory 96.0 0.0028 9.7E-08 39.7 1.8 19 2-20 213-231 (428)
450 4fcw_A Chaperone protein CLPB; 96.0 0.0032 1.1E-07 37.0 1.9 19 1-19 53-71 (311)
451 1e4v_A Adenylate kinase; trans 96.0 0.0021 7.2E-08 36.1 1.1 18 1-18 6-23 (214)
452 3r20_A Cytidylate kinase; stru 96.0 0.0029 9.8E-08 36.6 1.6 18 1-18 15-32 (233)
453 2z4s_A Chromosomal replication 96.0 0.0031 1.1E-07 39.4 1.9 18 1-18 136-153 (440)
454 4f4c_A Multidrug resistance pr 96.0 0.0022 7.7E-08 45.0 1.4 22 1-22 1111-1132(1321)
455 2bjv_A PSP operon transcriptio 96.0 0.0058 2E-07 35.3 3.0 20 1-20 35-54 (265)
456 3umf_A Adenylate kinase; rossm 96.0 0.002 6.9E-08 36.8 1.0 18 1-18 35-52 (217)
457 3syl_A Protein CBBX; photosynt 96.0 0.0027 9.1E-08 37.4 1.5 17 1-17 73-89 (309)
458 1ak2_A Adenylate kinase isoenz 96.0 0.0021 7.2E-08 36.6 1.0 18 1-18 22-39 (233)
459 3pfi_A Holliday junction ATP-d 96.0 0.0041 1.4E-07 37.1 2.3 20 1-20 61-80 (338)
460 1zuh_A Shikimate kinase; alpha 95.9 0.0037 1.3E-07 33.7 1.9 18 1-18 13-30 (168)
461 1tf7_A KAIC; homohexamer, hexa 95.9 0.0021 7.3E-08 40.9 1.1 14 1-14 45-58 (525)
462 1pzn_A RAD51, DNA repair and r 95.9 0.0022 7.6E-08 39.0 1.1 19 1-19 137-155 (349)
463 1e69_A Chromosome segregation 95.9 0.0022 7.4E-08 38.4 1.0 16 1-16 30-45 (322)
464 3eie_A Vacuolar protein sortin 95.9 0.0032 1.1E-07 37.6 1.7 18 1-18 57-74 (322)
465 4b4t_M 26S protease regulatory 95.9 0.0033 1.1E-07 39.5 1.8 19 2-20 222-240 (434)
466 2qby_B CDC6 homolog 3, cell di 95.9 0.0027 9.1E-08 38.3 1.3 18 1-18 51-68 (384)
467 2px0_A Flagellar biosynthesis 95.9 0.0024 8.3E-08 38.0 1.1 17 1-17 111-127 (296)
468 3k1j_A LON protease, ATP-depen 95.9 0.0044 1.5E-07 40.1 2.3 22 1-22 66-87 (604)
469 1w1w_A Structural maintenance 95.8 0.0033 1.1E-07 39.0 1.6 16 1-16 32-47 (430)
470 3uk6_A RUVB-like 2; hexameric 95.8 0.0031 1.1E-07 37.9 1.4 20 1-20 76-95 (368)
471 1um8_A ATP-dependent CLP prote 95.8 0.0043 1.5E-07 37.7 2.0 19 1-19 78-96 (376)
472 3pvs_A Replication-associated 95.8 0.0041 1.4E-07 39.0 1.9 20 1-20 56-75 (447)
473 1uj2_A Uridine-cytidine kinase 95.8 0.0044 1.5E-07 35.7 1.9 18 1-18 28-45 (252)
474 1vma_A Cell division protein F 95.8 0.0038 1.3E-07 37.4 1.6 17 1-17 110-126 (306)
475 2qgz_A Helicase loader, putati 95.8 0.0042 1.4E-07 37.1 1.8 18 1-18 158-175 (308)
476 3be4_A Adenylate kinase; malar 95.8 0.003 1E-07 35.6 1.1 18 1-18 11-28 (217)
477 3zvl_A Bifunctional polynucleo 95.8 0.0038 1.3E-07 38.7 1.7 18 1-18 264-281 (416)
478 3qkt_A DNA double-strand break 95.8 0.0039 1.3E-07 37.6 1.6 15 1-15 29-43 (339)
479 4b4t_L 26S protease subunit RP 95.7 0.0043 1.5E-07 39.0 1.8 19 2-20 222-240 (437)
480 4aby_A DNA repair protein RECN 95.7 0.00079 2.7E-08 41.3 -1.5 15 1-15 66-80 (415)
481 3ake_A Cytidylate kinase; CMP 95.7 0.0052 1.8E-07 34.0 1.9 18 1-18 8-25 (208)
482 3hws_A ATP-dependent CLP prote 95.7 0.0051 1.8E-07 37.2 2.0 19 1-19 57-75 (363)
483 4b4t_J 26S protease regulatory 95.7 0.0045 1.6E-07 38.6 1.7 19 2-20 189-207 (405)
484 2ocp_A DGK, deoxyguanosine kin 95.7 0.0041 1.4E-07 35.6 1.4 19 2-20 9-27 (241)
485 1hqc_A RUVB; extended AAA-ATPa 95.7 0.004 1.4E-07 36.8 1.5 18 1-18 44-61 (324)
486 3pxg_A Negative regulator of g 95.7 0.0035 1.2E-07 39.5 1.2 18 1-18 207-224 (468)
487 3d8b_A Fidgetin-like protein 1 95.7 0.0049 1.7E-07 37.4 1.9 19 1-19 123-141 (357)
488 1ypw_A Transitional endoplasmi 95.7 0.0066 2.2E-07 40.7 2.6 20 1-20 244-263 (806)
489 2dhr_A FTSH; AAA+ protein, hex 95.7 0.0041 1.4E-07 39.7 1.5 20 1-20 70-89 (499)
490 1p5z_B DCK, deoxycytidine kina 95.7 0.0029 9.8E-08 36.7 0.8 18 2-19 31-48 (263)
491 1sxj_A Activator 1 95 kDa subu 95.7 0.005 1.7E-07 39.2 1.9 18 2-19 84-101 (516)
492 2r44_A Uncharacterized protein 95.6 0.0039 1.3E-07 37.2 1.3 20 1-20 52-71 (331)
493 2dr3_A UPF0273 protein PH0284; 95.6 0.0036 1.2E-07 35.5 1.1 15 1-15 29-44 (247)
494 3crm_A TRNA delta(2)-isopenten 95.6 0.0054 1.8E-07 37.2 1.8 19 1-19 11-29 (323)
495 3te6_A Regulatory protein SIR3 95.6 0.004 1.4E-07 37.6 1.2 18 2-19 52-69 (318)
496 1jr3_A DNA polymerase III subu 95.6 0.0059 2E-07 36.7 2.0 17 2-18 45-61 (373)
497 3lda_A DNA repair protein RAD5 95.5 0.0038 1.3E-07 38.8 1.1 15 1-15 184-198 (400)
498 2qp9_X Vacuolar protein sortin 95.5 0.0057 1.9E-07 37.1 1.8 19 1-19 90-108 (355)
499 4hlc_A DTMP kinase, thymidylat 95.5 0.0068 2.3E-07 34.2 2.0 18 2-19 9-26 (205)
500 1iqp_A RFCS; clamp loader, ext 95.5 0.0059 2E-07 35.9 1.8 17 2-18 53-69 (327)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.90 E-value=1.8e-23 Score=119.90 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=56.9
Q ss_pred CCCCCCcHhHHH-HHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQ-KVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
||+++||||||+ +++.+.+...+.++...+.... ....++..++++||||+|+++|+.+ +..|+++++++++|||++
T Consensus 19 vGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k-~~~~~~~~v~l~iwDtaGqe~~~~l-~~~~~~~a~~~ilv~di~ 96 (216)
T 4dkx_A 19 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK-TMYLEDRTIRLQLWDTAGLERFRSL-IPSYIRDSAAAVVVYDIT 96 (216)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC----------CEEE-EEECSSCEEEEEEECCSCTTTCGGG-HHHHHTTCSEEEEEEETT
T ss_pred ECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEE-EEEecceEEEEEEEECCCchhhhhH-HHHHhccccEEEEEeecc
Confidence 699999999998 5556667666655555443333 3334578899999999999999999 459999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 97 ~~ 98 (216)
T 4dkx_A 97 NV 98 (216)
T ss_dssp CH
T ss_pred hh
Confidence 73
No 2
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.87 E-value=8e-23 Score=123.01 Aligned_cols=79 Identities=42% Similarity=0.747 Sum_probs=62.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-c-chhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-F-DAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~-~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++++.+++.+.......+|++.....+ +..++++||||+||++|+. . .+..||++++++|+|||+
T Consensus 5 lGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Di 82 (331)
T 3r7w_B 5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDS 82 (331)
T ss_dssp ECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--ccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEEC
Confidence 69999999999987778877766555567766555444 3458999999999999975 1 135899999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 83 td~ 85 (331)
T 3r7w_B 83 QDE 85 (331)
T ss_dssp SSC
T ss_pred Cch
Confidence 874
No 3
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.86 E-value=1.1e-21 Score=110.18 Aligned_cols=81 Identities=69% Similarity=1.067 Sum_probs=63.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccch--hhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDA--ELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~--~~~~~~~~~~i~v~D~ 78 (81)
+|+++||||||++++.+++.+........+.......+.++..+.+++||++|+++|..+.| ..++++++++|+|||+
T Consensus 26 vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~ 105 (196)
T 3llu_A 26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105 (196)
T ss_dssp EESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEEC
Confidence 59999999999998888777665444444433333333346778999999999999988864 6999999999999999
Q ss_pred cCC
Q psy9524 79 SMG 81 (81)
Q Consensus 79 ~~~ 81 (81)
+++
T Consensus 106 ~~~ 108 (196)
T 3llu_A 106 QDD 108 (196)
T ss_dssp TSC
T ss_pred CCc
Confidence 873
No 4
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.82 E-value=1.9e-20 Score=104.44 Aligned_cols=79 Identities=23% Similarity=0.264 Sum_probs=59.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceee-------ecceeeeEEEe----ecCCceeEEEEEecCCCccccccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLF-------LEGTNKMTKED----IANSSFLQYQLWDCPGQMDFQDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~-------~~~~~~~~~~~----~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~ 69 (81)
+|++|||||||++++.+.+....... ..++.+..... ..++..+++++||++|++.+..+ +..+++++
T Consensus 20 vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~ 98 (198)
T 3t1o_A 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS-RKLILRGV 98 (198)
T ss_dssp ECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH-HHHHTTTC
T ss_pred ECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH-HHHHHhcC
Confidence 69999999999998887776553221 12233222211 22467789999999999999998 65999999
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++|+|||+++
T Consensus 99 d~~i~v~D~~~ 109 (198)
T 3t1o_A 99 DGIVFVADSAP 109 (198)
T ss_dssp CEEEEEEECCG
T ss_pred CEEEEEEECCc
Confidence 99999999973
No 5
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.82 E-value=8.3e-20 Score=103.97 Aligned_cols=78 Identities=18% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+.....++.... +......++..+.+.+||++|++++..+ +..+++++|++|+|||++
T Consensus 33 vG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 109 (214)
T 3q3j_B 33 VGDVQCGKTAMLQVLAKDCYPETYVPTVFEN--YTACLETEEQRVELSLWDTSGSPYYDNV-RPLCYSDSDAVLLCFDIS 109 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EEEEEEC--CEEEEEEEEECCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCeeeee--EEEEEEECCEEEEEEEEECCCCHhHHHH-HHHHcCCCeEEEEEEECc
Confidence 6999999999996664 44444333333222 2222333477899999999999999998 559999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 110 ~~ 111 (214)
T 3q3j_B 110 RP 111 (214)
T ss_dssp CT
T ss_pred CH
Confidence 74
No 6
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.82 E-value=3.5e-20 Score=102.07 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... ...++...........+.++..+++++||++|++.+..+ +..+++++|++++|||++
T Consensus 12 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 90 (178)
T 2hxs_A 12 LGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM-LDKYIYGAQGVLLVYDIT 90 (178)
T ss_dssp ECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT-HHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch-hhHHHhhCCEEEEEEECC
Confidence 699999999999766554332 222222222222333333335689999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 91 ~ 91 (178)
T 2hxs_A 91 N 91 (178)
T ss_dssp C
T ss_pred C
Confidence 6
No 7
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.82 E-value=1.1e-19 Score=99.16 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=57.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+........ ++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 86 (170)
T 1ek0_A 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERFASL-APXYYRNAQAALVVYDVT 86 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-HHHHHTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCChhhhhh-hhhhhccCcEEEEEEecC
Confidence 599999999999666544 33333333333322222233 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 ~ 87 (170)
T 1ek0_A 87 K 87 (170)
T ss_dssp C
T ss_pred C
Confidence 6
No 8
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.82 E-value=1.1e-19 Score=101.70 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++.... +......++..+.+++||++|++.+..+ +..+++++|++|+|||++
T Consensus 29 vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 105 (194)
T 3reg_A 29 VGDGAVGKTCLLLAFSKGEIPTAYVPTVFEN--FSHVMKYKNEEFILHLWDTAGQEEYDRL-RPLSYADSDVVLLCFAVN 105 (194)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EEEEEEETTEEEEEEEEEECCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCccCCeeeee--eEEEEEECCEEEEEEEEECCCcHHHHHH-hHhhccCCcEEEEEEECC
Confidence 699999999999666544 333333332222 2222333477889999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 106 ~ 106 (194)
T 3reg_A 106 N 106 (194)
T ss_dssp C
T ss_pred C
Confidence 6
No 9
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.81 E-value=1.1e-19 Score=101.11 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+.++.... +......++..+.+.+||++|++.|..+ +..++++++++|+|||++
T Consensus 13 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 89 (184)
T 1m7b_A 13 VGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YTASFEIDTQRIELSLWDTSGSPYYDNV-RPLSYPDSDAVLICFDIS 89 (184)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EEEEEECSSCEEEEEEEEECCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccee--EEEEEEECCEEEEEEEEECCCChhhhhh-HHhhcCCCcEEEEEEECC
Confidence 599999999999766544 333333222222 2222223467889999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (184)
T 1m7b_A 90 R 90 (184)
T ss_dssp C
T ss_pred C
Confidence 6
No 10
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.81 E-value=1.5e-19 Score=100.07 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+......+.... +......++..+.+++||++|++.+..+ +..+++.+|++++|||++
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 87 (186)
T 1mh1_A 11 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--YSANVMVDGKPVNLGLWDTAGQEDYDRL-RPLSYPQTDVSLICFSLV 87 (186)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCSSCCCCSCCE--EEEEEEETTEEEEEEEECCCCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCcccce--eEEEEEECCEEEEEEEEECCCCHhHHHH-HHHhccCCcEEEEEEECC
Confidence 59999999999966654 4443333333222 2222233477899999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 88 ~ 88 (186)
T 1mh1_A 88 S 88 (186)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.81 E-value=1.8e-19 Score=98.34 Aligned_cols=78 Identities=17% Similarity=0.329 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+.+....+...+........ ++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 89 (170)
T 1r2q_A 12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWDTAGQERYHSL-APMYYRGAQAAIVVYDIT 89 (170)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-HHHHHTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHhhhh-hHHhccCCCEEEEEEECC
Confidence 59999999999976654 444333333222222222222 367889999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (170)
T 1r2q_A 90 N 90 (170)
T ss_dssp C
T ss_pred C
Confidence 6
No 12
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=101.30 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=54.0
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. ......++... +......++..+.+++||++|++++..+ +..+++++|++|+|||++
T Consensus 26 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 102 (201)
T 2q3h_A 26 VGDGAVGKTSLVVSYTTNGYPTEYIPTAFDN--FSAVVSVDGRPVRLQLCDTAGQDEFDKL-RPLCYTNTDIFLLCFSVV 102 (201)
T ss_dssp ECSTTSSHHHHHHHHHC--------CCSSEE--EEEEEEETTEEEEEEEEECCCSTTCSSS-GGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcccce--eEEEEEECCEEEEEEEEECCCCHHHHHH-hHhhcCCCcEEEEEEECC
Confidence 6999999999997665443 32222222211 2222233467789999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 103 ~ 103 (201)
T 2q3h_A 103 S 103 (201)
T ss_dssp C
T ss_pred C
Confidence 6
No 13
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.81 E-value=1.5e-19 Score=98.85 Aligned_cols=78 Identities=21% Similarity=0.324 Sum_probs=51.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+........ ++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 12 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 89 (170)
T 1z08_A 12 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQERFHAL-GPIYYRDSNGAILVYDIT 89 (170)
T ss_dssp ECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES-SSCEEEEEEEECCCC--------CCSSTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEE-CCEEEEEEEEECCCcHhhhhh-HHHHhccCCEEEEEEECc
Confidence 599999999999766544 43333333333322222222 467889999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (170)
T 1z08_A 90 D 90 (170)
T ss_dssp C
T ss_pred C
Confidence 6
No 14
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.81 E-value=1.2e-19 Score=102.72 Aligned_cols=77 Identities=16% Similarity=0.279 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+. +.+.....++.... +......++..+.+++||++|++.|..+ +..+++++|++|+|||++
T Consensus 15 ~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~ilv~d~~ 91 (212)
T 2j0v_A 15 VGDGAVGKTCMLICYTSNKFPTDYIPTVFDN--FSANVAVDGQIVNLGLWDTAGQEDYSRL-RPLSYRGADIFVLAFSLI 91 (212)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCSSCCC--EEEEEECSSCEEEEEEECCCCCCCCCC---CGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCcccee--EEEEEEECCEEEEEEEEECCCcHHHHHH-HHhhccCCCEEEEEEECC
Confidence 5999999999996664 44443333333222 2222223467789999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (212)
T 2j0v_A 92 S 92 (212)
T ss_dssp C
T ss_pred C
Confidence 6
No 15
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.81 E-value=1.3e-19 Score=98.70 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++.... +......++..+.+.+||++|++.+..+ +..++++++++++|||++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 85 (167)
T 1c1y_A 9 LGSGGVGKSALTVQFVQGIFVEKYDPTIEDS--YRKQVEVDCQQCMLEILDTAGTEQFTAM-RDLYMKNGQGFALVYSIT 85 (167)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSCCCCSEEE--EEEEEESSSCEEEEEEEEECSSCSSTTH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCccce--EEEEEEECCEEEEEEEEECCChHHHHHH-HHHHhccCCEEEEEEECC
Confidence 599999999999766544 333332222221 2222223467889999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 86 ~ 86 (167)
T 1c1y_A 86 A 86 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 16
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=2.6e-19 Score=98.82 Aligned_cols=78 Identities=18% Similarity=0.342 Sum_probs=57.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+...+........ ++..+++.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 18 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 95 (181)
T 2efe_B 18 LGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAV-NDATVKFEIWDTAGQERYHSL-APMYYRGAAAAIIVFDVT 95 (181)
T ss_dssp ECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEE-TTEEEEEEEEECCCSGGGGGG-THHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-hHHHhccCCEEEEEEECC
Confidence 599999999999666444 44333333333322222223 366789999999999999998 559999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 96 ~ 96 (181)
T 2efe_B 96 N 96 (181)
T ss_dssp C
T ss_pred C
Confidence 6
No 17
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.81 E-value=9e-20 Score=99.31 Aligned_cols=75 Identities=24% Similarity=0.333 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.++....+. ...+++++||++|++.++.+ +..+++++|++++|||+++
T Consensus 6 ~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 6 VGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVE-YKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp ECSTTSSHHHHHHHHHHHCSSCC----CCCSSCCEEEEE-CSSCEEEEEECCCCGGGHHH-HHHHTTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHcCCcCcc----cCcCceeEEEEE-ECCEEEEEEEcCCChhhHHH-HHHHhccCCEEEEEEECCC
Confidence 69999999999976644333322 223333333333 46688999999999999988 5589999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 80 ~ 80 (164)
T 1r8s_A 80 R 80 (164)
T ss_dssp G
T ss_pred H
Confidence 3
No 18
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.2e-19 Score=102.64 Aligned_cols=78 Identities=22% Similarity=0.379 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+......+...+.......+ ++..+.+++||++|++++..+ +..+++.+|++|+|||++
T Consensus 32 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~D~~ 109 (201)
T 2ew1_A 32 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSI-TQSYYRSANALILTYDIT 109 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHH-HGGGSTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEECCCcHHHHHH-HHHHHhcCCEEEEEEECC
Confidence 5999999999997664 4444333333222222222222 467789999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 110 ~ 110 (201)
T 2ew1_A 110 C 110 (201)
T ss_dssp C
T ss_pred C
Confidence 6
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.5e-19 Score=99.62 Aligned_cols=79 Identities=20% Similarity=0.316 Sum_probs=57.6
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. ......+...+........ ++..+++.+||++|++++..+ +..+++.++++|+|||++
T Consensus 29 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~iilV~d~~ 106 (192)
T 2fg5_A 29 LGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPC-GNELHKFLIWDTAGQERFHSL-APMYYRGSAAAVIVYDIT 106 (192)
T ss_dssp EECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEEC-SSSEEEEEEEEECCSGGGGGG-THHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEe-CCEEEEEEEEcCCCchhhHhh-hHHhhccCCEEEEEEeCC
Confidence 5999999999997665543 3333333333322222222 367889999999999999998 459999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 107 ~~ 108 (192)
T 2fg5_A 107 KQ 108 (192)
T ss_dssp CT
T ss_pred CH
Confidence 74
No 20
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.80 E-value=2.1e-19 Score=100.40 Aligned_cols=78 Identities=19% Similarity=0.341 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+...+........ ++..+.+.+||++|++.+..+ +..++++++++|+|||++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 104 (191)
T 2a5j_A 27 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRSI-TRSYYRGAAGALLVYDIT 104 (191)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSCC-CHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCchhhhhh-HHHHhccCCEEEEEEECC
Confidence 599999999999666544 43333333333322222223 367789999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 105 ~ 105 (191)
T 2a5j_A 105 R 105 (191)
T ss_dssp C
T ss_pred C
Confidence 6
No 21
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.80 E-value=2e-19 Score=101.97 Aligned_cols=77 Identities=19% Similarity=0.313 Sum_probs=56.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+.++.... +......++..+.+.+||++|++.|..+ +..++++++++|+|||++
T Consensus 34 vG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~ilv~D~~ 110 (205)
T 1gwn_A 34 VGDSQCGKTALLHVFAKDCFPENYVPTVFEN--YTASFEIDTQRIELSLWDTSGSPYYDNV-RPLSYPDSDAVLICFDIS 110 (205)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCSEEE--EEEEEESSSSEEEEEEEEECCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCcccee--EEEEEEECCEEEEEEEEeCCCcHhhhHH-HHhhccCCCEEEEEEECC
Confidence 699999999999666544 333332222222 2222233467899999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 111 ~ 111 (205)
T 1gwn_A 111 R 111 (205)
T ss_dssp C
T ss_pred C
Confidence 6
No 22
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.80 E-value=1.9e-19 Score=99.68 Aligned_cols=77 Identities=18% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.++. ......+.... . ......++..+.+++||++|++.+..+ +..+++++|++++|||++
T Consensus 24 ~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~-~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 100 (183)
T 3kkq_A 24 VGDGGVGKSALTIQFFQKIFVDDYDPTIEDS-Y-LKHTEIDNQWAILDVLDTAGQEEFSAM-REQYMRTGDGFLIVYSVT 100 (183)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE-E-EEEEEETTEEEEEEEEECCSCGGGCSS-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCccce-e-EEEEEeCCcEEEEEEEECCCchhhHHH-HHHHHhcCCEEEEEEECC
Confidence 6999999999997665443 33332222222 2 222333477888999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 101 ~ 101 (183)
T 3kkq_A 101 D 101 (183)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.80 E-value=3.7e-19 Score=97.18 Aligned_cols=78 Identities=21% Similarity=0.345 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. .+...++...+........ .+....+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 89 (170)
T 1z0j_A 12 LGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQY-QNELHKFLIWDTAGLERFRAL-APMYYRGSAAAIIVYDIT 89 (170)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGGGG-THHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEE-CCeEEEEEEEcCCCchhhhcc-cHhhCcCCCEEEEEEECc
Confidence 5999999999997665543 3333333333322222233 367789999999999999998 448999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (170)
T 1z0j_A 90 K 90 (170)
T ss_dssp C
T ss_pred C
Confidence 6
No 24
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=99.68 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. ......+...+..... ...+...+.+.+||++|++++..+ +..+++.++++|+|||++
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~vi~v~D~~ 108 (193)
T 2oil_A 31 IGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRT-VMLGTAAVKAQIWDTAGLERYRAI-TSAYYRGAVGALLVFDLT 108 (193)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEE-EEETTEEEEEEEEEESCCCTTCTT-HHHHHTTCCEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEE-EEECCEEEEEEEEeCCCchhhhhh-hHHHhccCCEEEEEEECC
Confidence 6999999999997665543 3333222222222222 222467789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 109 ~ 109 (193)
T 2oil_A 109 K 109 (193)
T ss_dssp C
T ss_pred C
Confidence 6
No 25
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.80 E-value=3.5e-19 Score=99.39 Aligned_cols=78 Identities=17% Similarity=0.293 Sum_probs=57.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +..........+........ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 22 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 99 (196)
T 3tkl_A 22 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIVVYDVT 99 (196)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCTT-HHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhhh-HHHHHhhCCEEEEEEECc
Confidence 599999999999766544 33333333333322233233 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 100 ~ 100 (196)
T 3tkl_A 100 D 100 (196)
T ss_dssp C
T ss_pred C
Confidence 6
No 26
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.2e-19 Score=100.38 Aligned_cols=77 Identities=13% Similarity=0.156 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+.... +......++..+.+.+||++|++++..+ +..+++++|++|+|||++
T Consensus 24 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 100 (194)
T 2atx_A 24 VGDGAVGKTCLLMSYANDAFPEEYVPTVFDH--YAVSVTVGGKQYLLGLYDTAGQEDYDRL-RPLSYPMTDVFLICFSVV 100 (194)
T ss_dssp EECTTSSHHHHHHHHHHSSCCCSCCCSSCCC--EEEEEESSSCEEEEEEECCCCSSSSTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccce--eEEEEEECCEEEEEEEEECCCCcchhHH-HHHhcCCCCEEEEEEECC
Confidence 599999999999666544 333333332222 2222233467789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 101 ~ 101 (194)
T 2atx_A 101 N 101 (194)
T ss_dssp C
T ss_pred C
Confidence 6
No 27
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.80 E-value=2.3e-19 Score=97.81 Aligned_cols=78 Identities=18% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+........ ++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 11 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 88 (168)
T 1z2a_A 11 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI-TKAYYRGAQACVLVFSTT 88 (168)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC-CHHHHTTCCEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH-HHHHhcCCCEEEEEEECc
Confidence 599999999999766544 33333333222222222222 366789999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 89 ~ 89 (168)
T 1z2a_A 89 D 89 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 28
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=102.51 Aligned_cols=78 Identities=19% Similarity=0.306 Sum_probs=53.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+...........+ ++..+.+.+||++|++++..+ +..+++.+|++|+|||++
T Consensus 35 vG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~iilv~D~~ 112 (201)
T 2hup_A 35 VGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQERFRTI-TQSYYRSANGAILAYDIT 112 (201)
T ss_dssp EECTTSSHHHHHHHHHHSCC----------CEEEEEEEE-TTEEEEEEEECCTTCGGGHHH-HHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-HHHHHhhCCEEEEEEECC
Confidence 599999999999666544 33333333222222222222 366789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 113 ~ 113 (201)
T 2hup_A 113 K 113 (201)
T ss_dssp B
T ss_pred C
Confidence 6
No 29
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.4e-19 Score=99.29 Aligned_cols=78 Identities=18% Similarity=0.325 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.+...++...+.......+ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 21 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 98 (195)
T 1x3s_A 21 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQERFRTL-TPSYYRGAQGVILVYDVT 98 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEE-TTEEEEEEEEEECSSGGGCCS-HHHHHTTCCEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEE-CCeEEEEEEEeCCCchhhhhh-hHHHhccCCEEEEEEECc
Confidence 599999999999766544 33333333222222222223 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 99 ~ 99 (195)
T 1x3s_A 99 R 99 (195)
T ss_dssp C
T ss_pred C
Confidence 6
No 30
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=1.9e-19 Score=100.65 Aligned_cols=77 Identities=27% Similarity=0.396 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+...... ...++.+.....+. ...+.+.+||++|++++..+ +..+++++|++|+|||+++
T Consensus 23 ~G~~~~GKSsl~~~l~~~~~~~~--~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~D~~~ 98 (199)
T 4bas_A 23 CGLDNSGKTTIINQVKPAQSSSK--HITATVGYNVETFE-KGRVAFTVFDMGGAKKFRGL-WETYYDNIDAVIFVVDSSD 98 (199)
T ss_dssp ECCTTSCHHHHHHHHSCCC------CCCCCSSEEEEEEE-ETTEEEEEEEECCSGGGGGG-GGGGCTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCccc--ccccccceeEEEEE-eCCEEEEEEECCCCHhHHHH-HHHHHhcCCEEEEEEECCc
Confidence 69999999999977755433221 01233344444444 67789999999999999998 5599999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 99 ~ 99 (199)
T 4bas_A 99 H 99 (199)
T ss_dssp G
T ss_pred H
Confidence 3
No 31
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.80 E-value=5.1e-19 Score=98.60 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=57.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+...+...... ...+..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 28 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 105 (189)
T 2gf9_A 28 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTV-YRHDKRIKLQIWDTAGQERYRTI-TTAYYRGAMGFLLMYDIA 105 (189)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEE-EETTEEEEEEEEECCSCCSSCCS-GGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEE-EECCeEEEEEEEeCCCcHHHhhh-HHHhccCCCEEEEEEECC
Confidence 699999999999766544 433333333333222222 22367789999999999999998 559999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 106 ~ 106 (189)
T 2gf9_A 106 N 106 (189)
T ss_dssp C
T ss_pred C
Confidence 6
No 32
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.80 E-value=3.6e-19 Score=97.91 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=55.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+........ ++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 13 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 90 (177)
T 1wms_A 13 LGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQERFRSL-RTPFYRGSDCCLLTFSVD 90 (177)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEE-TTEEEEEEEEECCCCGGGHHH-HGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEE-CCEEEEEEEEeCCCchhhhhh-HHHHHhcCCEEEEEEECc
Confidence 699999999999766544 33333333222222222222 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 91 ~ 91 (177)
T 1wms_A 91 D 91 (177)
T ss_dssp C
T ss_pred C
Confidence 6
No 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.80 E-value=1.9e-19 Score=98.35 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=54.6
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.+...++...+........ ++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 86 (170)
T 1g16_A 9 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI-TTAYYRGAMGIILVYDIT 86 (170)
T ss_dssp EESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-CHHHHTTEEEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-HHHHhccCCEEEEEEECC
Confidence 599999999999666443 43333333333322222222 366789999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 ~ 87 (170)
T 1g16_A 87 D 87 (170)
T ss_dssp C
T ss_pred C
Confidence 6
No 34
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.80 E-value=4.3e-19 Score=99.82 Aligned_cols=78 Identities=22% Similarity=0.366 Sum_probs=56.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+...+.... ....++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 91 (207)
T 1vg8_A 14 LGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-EVMVDDRLVTMQIWDTAGQERFQSL-GVAFYRGADCCVLVFDVT 91 (207)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE-EEESSSCEEEEEEEEECSSGGGSCS-CCGGGTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE-EEEECCEEEEEEEEeCCCcHHHHHh-HHHHHhCCcEEEEEEECC
Confidence 599999999999766544 3333332222222222 2222367789999999999999998 448999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (207)
T 1vg8_A 92 A 92 (207)
T ss_dssp C
T ss_pred C
Confidence 6
No 35
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=98.87 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=55.7
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... ...++...+........ ++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 15 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 92 (181)
T 3tw8_B 15 IGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRTI-TSTYYRGTHGVIVVYDVT 92 (181)
T ss_dssp ECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSSC-CGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhhh-HHHHhccCCEEEEEEECC
Confidence 699999999999877554332 22222222222222222 366789999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 93 ~ 93 (181)
T 3tw8_B 93 S 93 (181)
T ss_dssp C
T ss_pred C
Confidence 6
No 36
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.80 E-value=2.7e-19 Score=98.92 Aligned_cols=77 Identities=23% Similarity=0.251 Sum_probs=57.3
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+......+...+. ......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 12 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 88 (181)
T 3t5g_A 12 LGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF--TKLITVNGQEYHLQLVDTAGQDEYSIF-PQTYSIDINGYILVYSVT 88 (181)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE--EEEEEETTEEEEEEEEECCCCCTTCCC-CGGGTTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCCccccE--EEEEEECCEEEEEEEEeCCCchhhhHH-HHHHHhcCCEEEEEEECC
Confidence 5999999999996665 444444333333222 222333477789999999999999888 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 89 ~ 89 (181)
T 3t5g_A 89 S 89 (181)
T ss_dssp C
T ss_pred C
Confidence 6
No 37
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.80 E-value=3.3e-19 Score=99.53 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=52.7
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+......+.... +......++..+.+++||++|+++++.+ . .+++.++++++|||++
T Consensus 27 vG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~-~~~~~~~~~ilv~d~~ 102 (187)
T 3c5c_A 27 LGRRGAGKSALTVKFLTKRFISEYDPNLEDT--YSSEETVDHQPVHLRVMDTADLDTPRNC-E-RYLNWAHAFLVVYSVD 102 (187)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSCCCTTCCEE--EEEEEEETTEEEEEEEEECCC---CCCT-H-HHHTTCSEEEEEEETT
T ss_pred ECCCCCcHHHHHHHHHhCCCCcccCCCccce--eeEEEEECCEEEEEEEEECCCCCcchhH-H-HHHhhCCEEEEEEECC
Confidence 6999999999996554 44443333322222 1222233477899999999999999887 5 7999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 103 ~ 103 (187)
T 3c5c_A 103 S 103 (187)
T ss_dssp C
T ss_pred C
Confidence 6
No 38
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.80 E-value=3e-19 Score=99.55 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=56.6
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccc-ccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQ-DFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~-~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+. +.+......+...+........ ++..+.+.+||++|++++. .+ +..+++.+|++|+|||+
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~-~~~~~~~~d~iilv~D~ 103 (189)
T 1z06_A 26 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQERFRKSM-VQHYYRNVHAVVFVYDM 103 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHHHHTTT-HHHHHTTCCEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEE-CCEEEEEEEEECCCchhhhhhh-hHHHhcCCCEEEEEEEC
Confidence 5999999999996665 4444433333333322222223 3667899999999999998 66 56899999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 104 ~~ 105 (189)
T 1z06_A 104 TN 105 (189)
T ss_dssp TC
T ss_pred cC
Confidence 86
No 39
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.80 E-value=2.1e-19 Score=99.63 Aligned_cols=78 Identities=15% Similarity=0.345 Sum_probs=56.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+...+........ +++.+.+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 16 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 93 (186)
T 2bme_A 16 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQERFRSV-TRSYYRGAAGALLVYDIT 93 (186)
T ss_dssp EESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHH-HHTTSTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-HHHHHhcCCEEEEEEECc
Confidence 599999999999766544 43333322222222222222 366789999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 94 ~ 94 (186)
T 2bme_A 94 S 94 (186)
T ss_dssp C
T ss_pred C
Confidence 6
No 40
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.80 E-value=5.1e-19 Score=96.79 Aligned_cols=75 Identities=23% Similarity=0.357 Sum_probs=55.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.+.....+. ....++.+||++|++.+..+ +..+++++|++++|||+++
T Consensus 13 ~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 13 LGLDGAGKTTILYRLQVGEVVTT----IPTIGFNVETVT-YKNLKFQVWDLGGLTSIRPY-WRCYYSNTDAVIYVVDSCD 86 (171)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEE-ETTEEEEEEEECCCGGGGGG-GGGGCTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCCc----CCcCccceEEEE-ECCEEEEEEECCCChhhhHH-HHHHhccCCEEEEEEECCC
Confidence 59999999999977754433322 223333333333 34688999999999999998 5599999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 87 ~ 87 (171)
T 1upt_A 87 R 87 (171)
T ss_dssp C
T ss_pred H
Confidence 4
No 41
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.79 E-value=2.9e-19 Score=99.05 Aligned_cols=78 Identities=13% Similarity=0.168 Sum_probs=53.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+.........+..+. .......++..+.+++||++|++.+..+ +..+++.++++++|||+++
T Consensus 10 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~~ 87 (189)
T 4dsu_A 10 VGADGVGKSALTIQLIQNHFVDEYDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAM-RDQYMRTGEGFLCVFAINN 87 (189)
T ss_dssp ECCTTSSHHHHHHHHHHSSCCCCCCTTCCEE-EEEEEEETTEEEEEEEEECCCC---CTT-HHHHHHHCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCCchhe-EEEEEEECCcEEEEEEEECCCcHHHHHH-HHHHHhcCCEEEEEEECCC
Confidence 6999999999997775543332222222222 2222233477888999999999999999 5599999999999999986
No 42
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.79 E-value=3.5e-19 Score=100.14 Aligned_cols=78 Identities=18% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. ......+...+...... ..++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 91 (203)
T 1zbd_A 14 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTI-YRNDKRIKLQIWDTAGLERYRTI-TTAYYRGAMGFILMYDIT 91 (203)
T ss_dssp ECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEE-EETTEEEEEEEEEECCSGGGHHH-HHTTGGGCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEE-EECCeEEEEEEEECCCchhhcch-HHHhhcCCCEEEEEEECc
Confidence 5999999999997665543 33333322222222222 22467789999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (203)
T 1zbd_A 92 N 92 (203)
T ss_dssp C
T ss_pred C
Confidence 6
No 43
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.79 E-value=3.2e-19 Score=100.53 Aligned_cols=78 Identities=17% Similarity=0.301 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+.......+ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~vilv~d~~ 91 (206)
T 2bcg_Y 14 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRTI-TSSYYRGSHGIIIVYDVT 91 (206)
T ss_dssp EESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-CGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHHH-HHHhccCCCEEEEEEECc
Confidence 599999999999766544 33333333333322222223 367789999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (206)
T 2bcg_Y 92 D 92 (206)
T ss_dssp C
T ss_pred C
Confidence 6
No 44
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.79 E-value=1.5e-19 Score=100.52 Aligned_cols=75 Identities=24% Similarity=0.423 Sum_probs=56.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+..... ..++.+.....+. ...+.+++||++|++.++.+ +..+++++|++++|||+++
T Consensus 22 vG~~~vGKSsL~~~l~~~~~~~----~~~t~g~~~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~~ 95 (181)
T 1fzq_A 22 LGLDNAGKTTLLKQLASEDISH----ITPTQGFNIKSVQ-SQGFKLNVWDIGGQRKIRPY-WRSYFENTDILIYVIDSAD 95 (181)
T ss_dssp EESTTSSHHHHHHHHCCSCCEE----EEEETTEEEEEEE-ETTEEEEEEECSSCGGGHHH-HHHHHTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCc----ccCcCCeEEEEEE-ECCEEEEEEECCCCHHHHHH-HHHHhCCCCEEEEEEECcC
Confidence 5999999999998886653322 2333333333333 23688999999999999888 5689999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 96 ~ 96 (181)
T 1fzq_A 96 R 96 (181)
T ss_dssp G
T ss_pred H
Confidence 3
No 45
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.79 E-value=3.7e-19 Score=100.56 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+......+.... +......++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 36 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 112 (204)
T 4gzl_A 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--YSANVMVDGKPVNLGLWDTAGLEDYDRL-RPLSYPQTDVFLICFSLV 112 (204)
T ss_dssp EESTTSSHHHHHHHHHHSCCCC-CCCCSEEE--EEEEEECC-CEEEEEEEEECCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCcCCeecce--eEEEEEECCEEEEEEEEECCCchhhHHH-HHHHhccCCEEEEEEECC
Confidence 5999999999996665 44443433332221 2223333477889999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 113 ~ 113 (204)
T 4gzl_A 113 S 113 (204)
T ss_dssp C
T ss_pred C
Confidence 6
No 46
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.79 E-value=2.2e-19 Score=98.94 Aligned_cols=79 Identities=19% Similarity=0.293 Sum_probs=47.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+..........+..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 14 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 92 (182)
T 1ky3_A 14 LGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSL-GVAFYRGADCCVLVYDVT 92 (182)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------CCSTTCCEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhh-hHHHhhcCCEEEEEEECC
Confidence 599999999999666444 343333333333222222232255688999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 93 ~ 93 (182)
T 1ky3_A 93 N 93 (182)
T ss_dssp C
T ss_pred C
Confidence 6
No 47
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=4.3e-19 Score=97.58 Aligned_cols=78 Identities=18% Similarity=0.216 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+......+...+....... .++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 20 ~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 20 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMY-LEDRTVRLQLWDTAGQERFRSL-IPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEE-ETTEEEEEEEEEECCSGGGGGG-SHHHHHTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEE-ECCeEEEEEEEECCCcHHHHHH-HHHHhcCCCEEEEEEECC
Confidence 59999999999976654 44333332222222222222 2367789999999999999998 458999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 98 ~ 98 (179)
T 2y8e_A 98 N 98 (179)
T ss_dssp C
T ss_pred C
Confidence 6
No 48
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.79 E-value=2.8e-19 Score=106.78 Aligned_cols=80 Identities=30% Similarity=0.456 Sum_probs=58.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc-----cccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF-----QDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-----~~~~~~~~~~~~~~~i~v 75 (81)
+|++|||||||++.+.++..........+|.........-...+++++||+||++.+ ..+ +..+++++|++|+|
T Consensus 9 vG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~-~~~~~~~ad~vi~V 87 (307)
T 3r7w_A 9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQ-KDHIFQMVQVLIHV 87 (307)
T ss_dssp ECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTT-HHHHHTTCSEEEEE
T ss_pred ECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhH-HHHHhccCCEEEEE
Confidence 699999999999877666444332233444443333322124789999999999998 667 55899999999999
Q ss_pred EEccCC
Q psy9524 76 IDTSMG 81 (81)
Q Consensus 76 ~D~~~~ 81 (81)
||++++
T Consensus 88 ~D~t~~ 93 (307)
T 3r7w_A 88 FDVEST 93 (307)
T ss_dssp EETTCS
T ss_pred EECCCh
Confidence 999874
No 49
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.79 E-value=1.7e-19 Score=98.36 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=41.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+............+ .......++..+.+.+||++|++.+..+ +..+++.++++++|||+++
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~D~~g~~~~~~~-~~~~~~~~~~~i~v~d~~~ 84 (166)
T 3q72_A 8 LGAPGVGKSALARIFGGVEDGPEAEAAGHT--YDRSIVVDGEEASLMVYDIWEQDGGRWL-PGHCMAMGDAYVIVYSVTD 84 (166)
T ss_dssp EESTTSSHHHHHHHHCCC----------CE--EEEEEEETTEEEEEEEEECC----------------CCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHcCccccCCCCccccc--eEEEEEECCEEEEEEEEECCCCccchhh-hhhhhhhCCEEEEEEECCC
Confidence 599999999999888655443322222222 2222333478899999999999999998 5599999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 85 ~ 85 (166)
T 3q72_A 85 K 85 (166)
T ss_dssp H
T ss_pred H
Confidence 3
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.79 E-value=2.4e-19 Score=98.02 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=47.5
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... ....+..... .......++..+.+.+||++|++.+....+..+++.+|++++|||++
T Consensus 8 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 8 VGESGVGKSTLAGTFGGLQGDHAHEMENSEDT-YERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp ECSTTSSHHHHHHHHHCC------------CE-EEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhccCcccccCCCcCCe-eeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence 699999999999777543322 2222222222 22222234778999999999999988733558899999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 ~ 87 (169)
T 3q85_A 87 D 87 (169)
T ss_dssp C
T ss_pred C
Confidence 6
No 51
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.9e-19 Score=101.50 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=53.9
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....++...+.......+ ++..+.+.+||++|++++..+ +..+++.++++|+|||++
T Consensus 19 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~vilV~D~~ 96 (223)
T 3cpj_B 19 IGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRAI-TSAYYRGAVGALIVYDIS 96 (223)
T ss_dssp ESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTCC-CGGGTTTCCEEEEEEC-C
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEECCCccchhhh-HHHHhccCCEEEEEEeCC
Confidence 699999999999766544 33333333222222222222 366789999999999999998 459999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 97 ~ 97 (223)
T 3cpj_B 97 K 97 (223)
T ss_dssp C
T ss_pred C
Confidence 6
No 52
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.79 E-value=4.1e-19 Score=97.67 Aligned_cols=78 Identities=15% Similarity=0.250 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+.. ......+...+........ ++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 21 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 98 (179)
T 1z0f_A 21 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQERFRAV-TRSYYRGAAGALMVYDIT 98 (179)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEE-TTEEEEEEEEECTTGGGTCHH-HHHHHHTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEE-CCeEEEEEEEECCCChHhhhh-HHHHhccCCEEEEEEeCc
Confidence 5999999999997665443 3333222222322222223 367789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 99 ~ 99 (179)
T 1z0f_A 99 R 99 (179)
T ss_dssp C
T ss_pred C
Confidence 6
No 53
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=100.30 Aligned_cols=78 Identities=21% Similarity=0.325 Sum_probs=54.2
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... ....+...+.......+ ++..+.+.+||++|++++..+ +..+++.+|++|+|||++
T Consensus 32 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~iilV~D~~ 109 (192)
T 2il1_A 32 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERFNSI-TSAYYRSAKGIILVYDIT 109 (192)
T ss_dssp ECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGGHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHHHHH-HHHHhcCCCEEEEEEECc
Confidence 599999999999877554332 22222222222222222 366789999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 110 ~ 110 (192)
T 2il1_A 110 K 110 (192)
T ss_dssp C
T ss_pred C
Confidence 6
No 54
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=6.2e-19 Score=99.66 Aligned_cols=77 Identities=17% Similarity=0.275 Sum_probs=54.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.... ...++.... +......++..+.+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 107 (207)
T 2fv8_A 31 VGDGACGKTCLLIVFSKDEFPEVYVPTVFEN--YVADIEVDGKQVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSVD 107 (207)
T ss_dssp EECTTSSHHHHHHHHHHSSCC-------CCE--EEEEEEETTEEEEEEEEECTTCTTCTTT-GGGGCTTCCEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCcCCCcccce--EEEEEEECCEEEEEEEEECCCcHHHHHH-HHhhcCCCCEEEEEEECC
Confidence 599999999999766554333 332222222 1122223467789999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 108 ~ 108 (207)
T 2fv8_A 108 S 108 (207)
T ss_dssp C
T ss_pred C
Confidence 6
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.79 E-value=3.5e-19 Score=96.83 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=55.7
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+ .+......+.. .. .......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 9 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 85 (167)
T 1kao_A 9 LGSGGVGKSALTVQFVTGTFIEKYDPTIE-DF-YRKEIEVDSSPSVLEILDTAGTEQFASM-RDLYIKNGQGFILVYSLV 85 (167)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EE-EEEEEEETTEEEEEEEEECCCTTCCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCcccCCCCcc-ee-EEEEEEECCEEEEEEEEECCCchhhHHH-HHHHhccCCEEEEEEeCC
Confidence 69999999999966654 33333222211 11 1222223467788999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 86 ~ 86 (167)
T 1kao_A 86 N 86 (167)
T ss_dssp C
T ss_pred C
Confidence 6
No 56
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.79 E-value=5e-19 Score=99.67 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++..... ......++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 31 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 107 (201)
T 2gco_A 31 VGDGACGKTCLLIVFSKDQFPEVYVPTVFENY--IADIEVDGKQVELALWDTAGQEDYDRL-RPLSYPDTDVILMCFSID 107 (201)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC--EEEEEETTEEEEEEEECCCCSGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCcCCcccCCcccceE--EEEEEECCEEEEEEEEECCCchhHHHH-HHHhcCCCCEEEEEEECC
Confidence 599999999999666544 3333322222221 122223467789999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 108 ~ 108 (201)
T 2gco_A 108 S 108 (201)
T ss_dssp C
T ss_pred C
Confidence 6
No 57
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.79 E-value=7.7e-20 Score=101.25 Aligned_cols=78 Identities=17% Similarity=0.283 Sum_probs=36.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+.......+ ++..+.+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 91 (183)
T 2fu5_C 14 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTI-TTAYYRGAMGIMLVYDIT 91 (183)
T ss_dssp ECCCCC----------------CHHHHHCEEEEEEEEEE-TTEEEEEEEEEC----------CCTTTTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEE-CCEEEEEEEEcCCCChhhhhh-HHHHHhcCCEEEEEEECc
Confidence 599999999999666443 33332222222211122222 467789999999999999988 448999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (183)
T 2fu5_C 92 N 92 (183)
T ss_dssp C
T ss_pred C
Confidence 6
No 58
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.79 E-value=3.1e-19 Score=97.12 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... .......++..+.+.+||++|++++..+ +..+++.++++++|||++
T Consensus 10 ~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~D~~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 86 (168)
T 1u8z_A 10 VGSGGVGKSALTLQFMYDEFVEDYEPTKADS--YRKKVVLDGEEVQIDILDTAGQEDYAAI-RDNYFRSGEGFLCVFSIT 86 (168)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCSCCCTTCCEE--EEEEEEETTEEEEEEEEECCC---CHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCccCCCCCCCcceE--EEEEEEECCEEEEEEEEECCCcchhHHH-HHHHhhcCCEEEEEEECC
Confidence 599999999999766544 333222221111 1222223467789999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 ~ 87 (168)
T 1u8z_A 87 E 87 (168)
T ss_dssp C
T ss_pred C
Confidence 6
No 59
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=100.22 Aligned_cols=78 Identities=22% Similarity=0.322 Sum_probs=53.9
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+...+.......+ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 34 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~iilv~d~~ 111 (199)
T 2p5s_A 34 AGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIV-DGERTVLQLWDTAGQERFRSI-AKSYFRKADGVLLLYDVT 111 (199)
T ss_dssp ESSTTSSHHHHHHHHHHCCCC----------CEEEEEEE-TTEEEEEEEEECTTCTTCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEE-CCEEEEEEEEECCCCcchhhh-HHHHHhhCCEEEEEEECC
Confidence 599999999999766544 33333333332322222233 367789999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 112 ~ 112 (199)
T 2p5s_A 112 C 112 (199)
T ss_dssp C
T ss_pred C
Confidence 6
No 60
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.79 E-value=1.9e-19 Score=102.39 Aligned_cols=77 Identities=19% Similarity=0.286 Sum_probs=40.7
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+... .....+. ... +......++..+.+.+||++|++.+..+ +..++++++++++|||++
T Consensus 40 vG~~~vGKSsli~~l~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 116 (214)
T 2j1l_A 40 VGDGGCGKTSLLMVFADGAFPESYTPTV-FER-YMVNLQVKGKPVHLHIWDTAGQDDYDRL-RPLFYPDASVLLLCFDVT 116 (214)
T ss_dssp EECTTSSHHHHHHHHHC-------CCCC-CEE-EEEEEEETTEEEEEEEEEC----------------CEEEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCCCCCCCcc-cee-EEEEEEECCEEEEEEEEECCCchhhhHH-HHHHhccCCEEEEEEECc
Confidence 59999999999977755433 2222222 111 2222223467789999999999999998 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 117 ~ 117 (214)
T 2j1l_A 117 S 117 (214)
T ss_dssp C
T ss_pred C
Confidence 6
No 61
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.79 E-value=4.3e-19 Score=99.87 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=54.3
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 30 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 106 (201)
T 3oes_A 30 LGYRCVGKTSLAHQFVEGEFSEGYDPTVENT--YSKIVTLGKDEFHLHLVDTAGQDEYSIL-PYSFIIGVHGYVLVYSVT 106 (201)
T ss_dssp EESTTSSHHHHHHHHHHSCCCSCCCCCSEEE--EEEEEC----CEEEEEEEECCCCTTCCC-CGGGTTTCCEEEEEEETT
T ss_pred ECCCCcCHHHHHHHHHhCCCCCCCCCccceE--EEEEEEECCEEEEEEEEECCCccchHHH-HHHHHhcCCEEEEEEeCC
Confidence 599999999999766544 333332222222 1222223467789999999999999998 459999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 107 ~ 107 (201)
T 3oes_A 107 S 107 (201)
T ss_dssp C
T ss_pred C
Confidence 6
No 62
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=3.4e-19 Score=98.82 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=55.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+..... ..++.+.....+. .+.+.+.+||++|+++++.+ +..+++++|++++|||+++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~----~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~D~~~ 100 (181)
T 2h17_A 27 VGLDNAGKTTILYQFSMNEVVH----TSPTIGSNVEEIV-INNTRFLMWDIGGQESLRSS-WNTYYTNTEFVIVVVDSTD 100 (181)
T ss_dssp EEETTSSHHHHHHHHHTTSCEE----EECCSSSSCEEEE-ETTEEEEEEEESSSGGGTCG-GGGGGTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCc----cCCcCceeeEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhccCCEEEEEEECCC
Confidence 5899999999997775543322 2233222222222 23488999999999999998 5599999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 101 ~ 101 (181)
T 2h17_A 101 R 101 (181)
T ss_dssp T
T ss_pred H
Confidence 4
No 63
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=8.3e-19 Score=99.02 Aligned_cols=78 Identities=24% Similarity=0.375 Sum_probs=57.0
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+ .+.....++...+.......+ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 26 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 103 (213)
T 3cph_A 26 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRTI-TTAYYRGAMGIILVYDVT 103 (213)
T ss_dssp ECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTCC-CHHHHTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-HHHHhccCCEEEEEEECC
Confidence 59999999999966644 443433333333322222223 366789999999999999998 459999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 104 ~ 104 (213)
T 3cph_A 104 D 104 (213)
T ss_dssp C
T ss_pred C
Confidence 6
No 64
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.78 E-value=4.3e-19 Score=97.38 Aligned_cols=78 Identities=14% Similarity=-0.011 Sum_probs=49.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcc--ccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD--FQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~--~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+.+........+...+.......+ ++..+.+.+||++|++. +..+ ...+++.++++++|||+
T Consensus 10 ~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~-~~~~~~~~~~~i~v~d~ 87 (175)
T 2nzj_A 10 LGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTV-DGEDTTLVVVDTWEAEKLDKSWS-QESCLQGGSAYVIVYSI 87 (175)
T ss_dssp ECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEE-TTEEEEEEEECCC-------CHH-HHHTTTSCSEEEEEEET
T ss_pred ECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEE-CCEEEEEEEEecCCCCccchhhh-HHhhcccCCEEEEEEEC
Confidence 69999999999987765544332222233322222223 46778999999999988 4555 44889999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 88 ~~ 89 (175)
T 2nzj_A 88 AD 89 (175)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 65
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.4e-19 Score=96.90 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=49.6
Q ss_pred CCCCCCcHhHHHHHHhccCC-C-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-P-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~ 78 (81)
+|+++||||||++.+.+... . ...++...+........ ++..+.+.+||++|++.+..+ +..+++++|++++|||+
T Consensus 16 ~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~ 93 (180)
T 2g6b_A 16 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSV-THAYYRDAHALLLLYDV 93 (180)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC---------CCGGGCSEEEEEEET
T ss_pred ECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHH-HHHHccCCCEEEEEEEC
Confidence 59999999999976654433 2 22222222222222222 467789999999999999988 45899999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 94 ~~ 95 (180)
T 2g6b_A 94 TN 95 (180)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 66
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=1.7e-19 Score=99.65 Aligned_cols=77 Identities=17% Similarity=0.289 Sum_probs=47.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++.... +......++..+.+++||++|++++..+ +..+++++|++++|||++
T Consensus 14 ~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 90 (182)
T 3bwd_D 14 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDN--FSANVVVNGATVNLGLWDTAGQEDYNRL-RPLSYRGADVFILAFSLI 90 (182)
T ss_dssp ECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTT-GGGGGTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCeeeee--EEEEEEECCEEEEEEEEECCCChhhhhh-HHhhccCCCEEEEEEECC
Confidence 599999999999666443 333332222221 1111222356788899999999999998 558999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 91 ~ 91 (182)
T 3bwd_D 91 S 91 (182)
T ss_dssp C
T ss_pred C
Confidence 6
No 67
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=6e-19 Score=96.36 Aligned_cols=77 Identities=19% Similarity=0.232 Sum_probs=56.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....++...+ +......+...+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 9 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 85 (172)
T 2erx_A 9 FGAGGVGKSSLVLRFVKGTFRESYIPTVEDT--YRQVISCDKSICTLQITDTTGSHQFPAM-QRLSISKGHAFILVYSIT 85 (172)
T ss_dssp ECCTTSSHHHHHHHHHTCCCCSSCCCCSCEE--EEEEEEETTEEEEEEEEECCSCSSCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCCcccc--EEEEEEECCEEEEEEEEECCCchhhHHH-HHHhcccCCEEEEEEECc
Confidence 599999999999777554 333332222222 2222223467788999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 86 ~ 86 (172)
T 2erx_A 86 S 86 (172)
T ss_dssp C
T ss_pred C
Confidence 6
No 68
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=3e-19 Score=99.14 Aligned_cols=75 Identities=23% Similarity=0.362 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.+.....+. ...+++++||++|++++..+ +..+++++|++++|||+++
T Consensus 24 ~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 97 (186)
T 1ksh_A 24 LGLDNAGKTTILKKFNGEDVDTI----SPTLGFNIKTLE-HRGFKLNIWDVGGQKSLRSY-WRNYFESTDGLIWVVDSAD 97 (186)
T ss_dssp ECSTTSSHHHHHHHHTTCCCSSC----CCCSSEEEEEEE-ETTEEEEEEEECCSHHHHTT-GGGGCTTCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCcc----cccCccceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhcCCCEEEEEEECcC
Confidence 59999999999987765543222 223333333333 24688999999999999998 5599999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 98 ~ 98 (186)
T 1ksh_A 98 R 98 (186)
T ss_dssp G
T ss_pred H
Confidence 3
No 69
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.78 E-value=7.8e-19 Score=96.68 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=56.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 15 ~G~~~~GKssli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 91 (181)
T 2fn4_A 15 VGGGGVGKSALTIQFIQSYFVSDYDPTIEDS--YTKICSVDGIPARLDILDTAGQEEFGAM-REQYMRAGHGFLLVFAIN 91 (181)
T ss_dssp EECTTSSHHHHHHHHHHSSCCSSCCTTCCEE--EEEEEEETTEEEEEEEEECCCTTTTSCC-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCCcCce--EEEEEEECCEEEEEEEEECCCchhhHHH-HHHHHhhCCEEEEEEeCC
Confidence 599999999999766554 333322222222 2222223466789999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 92 ~ 92 (181)
T 2fn4_A 92 D 92 (181)
T ss_dssp C
T ss_pred C
Confidence 6
No 70
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=3.2e-19 Score=99.30 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=51.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.+.....+. ...+.+++||++|+++++.+ +..+++++|++|+|||+++
T Consensus 22 ~G~~~~GKssl~~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 95 (187)
T 1zj6_A 22 VGLDNAGKTTILYQFSMNEVVHT----SPTIGSNVEEIV-INNTRFLMWDIGGQESLRSS-WNTYYTNTEFVIVVVDSTD 95 (187)
T ss_dssp EESTTSSHHHHHHHHHTTSCEEE----ECCSCSSCEEEE-ETTEEEEEEECCC----CGG-GHHHHTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCcC----cCCCccceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhcCCCEEEEEEeCCC
Confidence 59999999999977764433222 233332222222 23588999999999999998 5599999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 96 ~ 96 (187)
T 1zj6_A 96 R 96 (187)
T ss_dssp T
T ss_pred H
Confidence 4
No 71
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=6e-19 Score=98.74 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=54.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.++......++... ....+. ...+++++||++|++.++.+ +..+++++|++++|||+++
T Consensus 29 vG~~~vGKSsli~~l~~~~~~~~~~t~~~----~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 29 LGLDNAGKTTLLHMLKNDRLATLQPTWHP----TSEELA-IGNIKFTTFDLGGHIQARRL-WKDYFPEVNGIVFLVDAAD 102 (190)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCCCCCCSC----EEEEEE-ETTEEEEEEECCCSGGGTTS-GGGGCTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCccccCCCC----CeEEEE-ECCEEEEEEECCCCHHHHHH-HHHHHhcCCEEEEEEECCC
Confidence 59999999999977755443333222222 222222 22388999999999999998 5589999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 103 ~ 103 (190)
T 1m2o_B 103 P 103 (190)
T ss_dssp G
T ss_pred h
Confidence 3
No 72
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=1.3e-18 Score=97.09 Aligned_cols=37 Identities=24% Similarity=0.571 Sum_probs=33.7
Q ss_pred eEEEEEecCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
+.+.+||++|++.+..+ +..+++.+|++|+|||++++
T Consensus 93 ~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~D~~~~ 129 (208)
T 3clv_A 93 IKFDIWDTAGQERYASI-VPLYYRGATCAIVVFDISNS 129 (208)
T ss_dssp EEEEEEECTTGGGCTTT-HHHHHTTCSEEEEEEETTCH
T ss_pred eEEEEEECCCcHHHHHH-HHHHhcCCCEEEEEEECCCH
Confidence 88999999999999998 55999999999999999863
No 73
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.78 E-value=1.1e-18 Score=96.99 Aligned_cols=79 Identities=18% Similarity=0.255 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCc---------eeEEEEEecCCCccccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSS---------FLQYQLWDCPGQMDFQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~~D~~G~~~~~~~~~~~~~~~~~ 70 (81)
+|++|||||||++.+.+ .+.+...++...+.........++. .+.+.+||++|++.+..+ +..+++++|
T Consensus 17 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d 95 (195)
T 3bc1_A 17 LGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL-TTAFFRDAM 95 (195)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH-HHHTTTTCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH-HHHHHcCCC
Confidence 59999999999976654 3433333322222210112222233 689999999999999988 558999999
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++|+|||+++
T Consensus 96 ~~i~v~d~~~ 105 (195)
T 3bc1_A 96 GFLLLFDLTN 105 (195)
T ss_dssp EEEEEEETTC
T ss_pred EEEEEEECCC
Confidence 9999999976
No 74
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.78 E-value=2.7e-19 Score=100.75 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=48.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+.......++...+ ...+. ...+.+++||++|++.++.+ +..+++++|++++|||+++
T Consensus 31 vG~~~vGKSsLi~~l~~~~~~~~~~t~~~~----~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~D~~~ 104 (198)
T 1f6b_A 31 LGLDNAGKTTLLHMLKDDRLGQHVPTLHPT----SEELT-IAGMTFTTFDLGGHIQARRV-WKNYLPAINGIVFLVDCAD 104 (198)
T ss_dssp EEETTSSHHHHHHHHSCC------CCCCCS----CEEEE-ETTEEEEEEEECC----CCG-GGGGGGGCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCCCccCCCCCce----eEEEE-ECCEEEEEEECCCcHhhHHH-HHHHHhcCCEEEEEEECCC
Confidence 599999999999877654333322222222 22222 22388999999999999998 5589999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 105 ~ 105 (198)
T 1f6b_A 105 H 105 (198)
T ss_dssp G
T ss_pred H
Confidence 3
No 75
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-19 Score=100.61 Aligned_cols=78 Identities=18% Similarity=0.246 Sum_probs=59.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+...+........ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 106 (191)
T 3dz8_A 29 IGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYR-HEKRVKLQIWDTAGQERYRTI-TTAYYRGAMGFILMYDIT 106 (191)
T ss_dssp EESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEE-TTTTEEEEEECHHHHHHCHHH-HHHHHTTCCEEEEEEETT
T ss_pred ECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEE-CCEEEEEEEEeCCChHHHHHH-HHHHHccCCEEEEEEECc
Confidence 599999999999666544 44444444444433333333 367899999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 107 ~ 107 (191)
T 3dz8_A 107 N 107 (191)
T ss_dssp C
T ss_pred C
Confidence 6
No 76
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.78 E-value=3.5e-19 Score=100.30 Aligned_cols=78 Identities=14% Similarity=0.314 Sum_probs=53.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +......+...+........ ++..+.+.+||++|++.+..+ +..+++.+|++|+|||++
T Consensus 31 ~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 108 (200)
T 2o52_A 31 IGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQERFRSV-TRSYYRGAAGALLVYDIT 108 (200)
T ss_dssp EESTTSSHHHHHHHHHC------------CCEEEEEEEE-TTEEEEEEEECCTTHHHHSCC-CHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEE-CCeeeEEEEEcCCCcHhHHHH-HHHHhccCCEEEEEEECc
Confidence 599999999999766544 33333333222222222222 366789999999999999998 459999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 109 ~ 109 (200)
T 2o52_A 109 S 109 (200)
T ss_dssp C
T ss_pred C
Confidence 6
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.78 E-value=5.4e-19 Score=98.60 Aligned_cols=74 Identities=24% Similarity=0.407 Sum_probs=55.5
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +.....+ +.+.....+. ...+.+.+||++|++++..+ +..+++++|++|+|||++
T Consensus 28 ~G~~~~GKSsli~~l~~~~~~~~~~~----t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~D~~ 101 (188)
T 1zd9_A 28 VGLQYSGKTTFVNVIASGQFNEDMIP----TVGFNMRKIT-KGNVTIKLWDIGGQPRFRSM-WERYCRGVSAIVYMVDAA 101 (188)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCC----CCSEEEEEEE-ETTEEEEEEEECCSHHHHTT-HHHHHTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCccCC----CCceeEEEEE-eCCEEEEEEECCCCHhHHHH-HHHHHccCCEEEEEEECC
Confidence 699999999999766544 3333322 2222222333 55788999999999999998 668999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 102 ~ 102 (188)
T 1zd9_A 102 D 102 (188)
T ss_dssp C
T ss_pred C
Confidence 6
No 78
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.78 E-value=4.3e-19 Score=99.47 Aligned_cols=75 Identities=24% Similarity=0.321 Sum_probs=51.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+...... .++.++....+. ...+.+.+||++|+++++.+ +..+++++|++++|||+++
T Consensus 35 ~G~~~vGKSsLi~~l~~~~~~~~----~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~iilv~D~~~ 108 (192)
T 2b6h_A 35 VGLDAAGKTTILYKLKLGEIVTT----IPTIGFNVETVE-YKNICFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 108 (192)
T ss_dssp EESTTSSHHHHHHHHCSSCCEEE----EEETTEEEEEEE-ETTEEEEEEECC-----CTT-HHHHHHTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhCCcccc----CCcCceeEEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhccCCEEEEEEECCC
Confidence 59999999999987754433222 334333333333 45689999999999999998 5589999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 109 ~ 109 (192)
T 2b6h_A 109 R 109 (192)
T ss_dssp G
T ss_pred H
Confidence 4
No 79
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=7.5e-19 Score=97.16 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=55.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 24 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 100 (187)
T 2a9k_A 24 VGSGGVGKSALTLQFMYDEFVEDYEPTKADS--YRKKVVLDGEEVQIDILDTAGQEDYAAI-RDNYFRSGEGFLCVFSIT 100 (187)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCSCCTTCCEE--EEEEEEETTEEEEEEEEECCCTTCCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhhCCCCCcCCCccceE--EEEEEEECCEEEEEEEEECCCCcccHHH-HHHHhccCCEEEEEEECc
Confidence 599999999999766544 333322222221 2222223467789999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 101 ~ 101 (187)
T 2a9k_A 101 E 101 (187)
T ss_dssp C
T ss_pred C
Confidence 6
No 80
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.77 E-value=8e-19 Score=98.58 Aligned_cols=77 Identities=14% Similarity=0.221 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 20 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 96 (206)
T 2bov_A 20 VGSGGVGKSALTLQFMYDEFVEDYEPTKADS--YRKKVVLDGEEVQIDILDTAGQEDYAAI-RDNYFRSGEGFLCVFSIT 96 (206)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCTTCCTTCCEE--EEEEEEETTEEEEEEEEECCCTTCCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCCCccceE--EEEEEEECCEEEEEEEEcCCChhhhHHH-HHHHHhhCCEEEEEEECC
Confidence 599999999999766543 333332222221 1222223467789999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 97 ~ 97 (206)
T 2bov_A 97 E 97 (206)
T ss_dssp C
T ss_pred C
Confidence 6
No 81
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.77 E-value=2.8e-19 Score=100.59 Aligned_cols=78 Identities=10% Similarity=0.068 Sum_probs=54.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-cchhhhhccCCEEEEEEEc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-FDAELIFARCGALIFVIDT 78 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~~~~~i~v~D~ 78 (81)
+|++|||||||++.+.+.... ...+.+..+. .......++..+++.+||++|++.+.. + +..+++.++++|+|||+
T Consensus 29 vG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~-~~~~~~~~d~~ilv~d~ 106 (195)
T 3cbq_A 29 VGESGVGKSTLAGTFGGLQGDSAHEPENPEDT-YERRIMVDKEEVTLVVYDIWEQGDAGGWL-RDHCLQTGDAFLIVFSV 106 (195)
T ss_dssp ECSTTSSHHHHHHHTCCEECCGGGTTTSCTTE-EEEEEEETTEEEEEEEECCCCCSGGGHHH-HHHHHHHCSEEEEEEET
T ss_pred ECCCCCCHHHHHHHHHhccCCccCCCCcccce-EEEEEEECCEEEEEEEEecCCCccchhhh-HHHhhccCCEEEEEEEC
Confidence 699999999999877432221 1111111111 222222347789999999999998876 5 55889999999999999
Q ss_pred cC
Q psy9524 79 SM 80 (81)
Q Consensus 79 ~~ 80 (81)
++
T Consensus 107 ~~ 108 (195)
T 3cbq_A 107 TD 108 (195)
T ss_dssp TC
T ss_pred CC
Confidence 86
No 82
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.77 E-value=3.4e-19 Score=101.53 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=58.5
Q ss_pred CCCCCCcHhHHHHH-HhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKV-VFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++. +.+.+......+...+........ +...+.+.+||++|++.+..+ +..++++++++|+|||++
T Consensus 21 ~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 98 (221)
T 3gj0_A 21 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGPIKFNVWDTAGQEKFGGL-RDGYYIQAQCAIIMFDVT 98 (221)
T ss_dssp EECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE-TTEEEEEEEEEECSGGGTSCC-CHHHHTTCCEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE-CCEEEEEEEEeCCChHHHhHH-HHHHHhcCCEEEEEEECC
Confidence 59999999999965 655555444333333333333333 367889999999999999998 449999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 99 ~ 99 (221)
T 3gj0_A 99 S 99 (221)
T ss_dssp C
T ss_pred C
Confidence 6
No 83
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.77 E-value=9.6e-19 Score=99.08 Aligned_cols=77 Identities=19% Similarity=0.257 Sum_probs=54.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc-cchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD-FDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~-~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+........++... .....+.+...+++++||++|++.++. + +..|++.++++|+|||++
T Consensus 13 vG~~~~GKTsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~~i~v~d~~ 89 (214)
T 2fh5_B 13 VGLCDSGKTLLFVRLLTGQYRDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLRFQL-LDRFKSSARAVVFVVDSA 89 (214)
T ss_dssp ECSTTSSHHHHHHHHHHSCCCCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHHHHH-HHHHGGGEEEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCccee--eEEEEecCCCccEEEEEECCCChhHHHHH-HHHHHhhCCEEEEEEECC
Confidence 699999999999666544333322222222 222333323368999999999999988 6 558999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (214)
T 2fh5_B 90 A 90 (214)
T ss_dssp T
T ss_pred C
Confidence 5
No 84
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.77 E-value=1.4e-18 Score=98.58 Aligned_cols=78 Identities=17% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCc----------eeEEEEEecCCCccccccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSS----------FLQYQLWDCPGQMDFQDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~D~~G~~~~~~~~~~~~~~~~ 69 (81)
+|+++||||||++.+.+.... ....+...........+. +. .+.+.|||++|++.+..+ +..+++.+
T Consensus 31 vG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~-~~~~~~~~ 108 (217)
T 2f7s_A 31 LGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYN-AQGPNGSSGKAFKVHLQLWDTAGQERFRSL-TTAFFRDA 108 (217)
T ss_dssp ESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEE-C-------CCEEEEEEEEEEEESHHHHHHH-HHHHHTTC
T ss_pred ECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEEC-CccccccccCceeEEEEEEECCCcHhHHhH-HHHHhcCC
Confidence 599999999999777554333 332222222212222222 33 688999999999999988 55999999
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++|+|||+++
T Consensus 109 d~iilV~D~~~ 119 (217)
T 2f7s_A 109 MGFLLMFDLTS 119 (217)
T ss_dssp CEEEEEEETTC
T ss_pred CEEEEEEECcC
Confidence 99999999976
No 85
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.77 E-value=1.2e-18 Score=96.07 Aligned_cols=73 Identities=21% Similarity=0.161 Sum_probs=51.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+.......++.. .. +......++..+++++||++|+++ . .+++++|++|+|||+++
T Consensus 13 vG~~~vGKTsli~~l~~~~~~~~~~t~~-~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~-~~~~~~d~~ilv~D~~~ 84 (178)
T 2iwr_A 13 LGDARSGKSSLIHRFLTGSYQVLEKTES-EQ-YKKEMLVDGQTHLVLIREEAGAPD-----A-KFSGWADAVIFVFSLED 84 (178)
T ss_dssp ECCGGGCHHHHHHHHHHSCCCCCSSCSS-SE-EEEEEEETTEEEEEEEEECSSSCC-----H-HHHHHCSEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHhCCCCCcCCCcc-ee-EEEEEEECCEEEEEEEEECCCCch-----h-HHHHhCCEEEEEEECcC
Confidence 6999999999996665443322322222 21 222222346778999999999986 3 78999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 85 ~ 85 (178)
T 2iwr_A 85 E 85 (178)
T ss_dssp H
T ss_pred H
Confidence 3
No 86
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=9.8e-19 Score=97.78 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=56.2
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+. +.....++...+ +......+...+.+.+||++|++.+..+ +..+++.+|++++|||++
T Consensus 14 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 90 (199)
T 2gf0_A 14 FGAGGVGKSSLVLRFVKGTFRDTYIPTIEDT--YRQVISCDKSVCTLQITDTTGSHQFPAM-QRLSISKGHAFILVFSVT 90 (199)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCTTSCCCCEE--EEEEEEETTEEEEEEEEECCGGGSCHHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCcHHHHHHHHHcCCCCCcccCccccc--eeEEEEECCEEEEEEEEeCCChHHhHHH-HHHhhccCCEEEEEEECc
Confidence 599999999999766543 333333322222 2222223467789999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 91 ~ 91 (199)
T 2gf0_A 91 S 91 (199)
T ss_dssp C
T ss_pred C
Confidence 6
No 87
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=96.19 Aligned_cols=75 Identities=31% Similarity=0.432 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+.. .... ..++.+.....+. ...+.+.+||++|++.++.+ +..+++++|++|+|||++
T Consensus 27 ~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~ 101 (190)
T 2h57_A 27 LGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFK-SSSLSFTVFDMSGQGRYRNL-WEHYYKEGQAIIFVIDSS 101 (190)
T ss_dssp EECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEE-CSSCEEEEEEECCSTTTGGG-GGGGGGGCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEE-ECCEEEEEEECCCCHHHHHH-HHHHHhcCCEEEEEEECC
Confidence 5999999999998775553 2221 1233333333333 34588999999999999998 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 102 ~ 102 (190)
T 2h57_A 102 D 102 (190)
T ss_dssp C
T ss_pred C
Confidence 6
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.76 E-value=2e-18 Score=96.08 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+... .....+. .. .+......++..+.+.+||++|++.+..+ +..+++.++++++|||++
T Consensus 27 vG~~~~GKSsli~~l~~~~~~~~~~~t~-~~-~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 103 (190)
T 3con_A 27 VGAGGVGKSALTIQLIQNHFVDEYDPTI-ED-SYRKQVVIDGETCLLDILDTAGQEEYSAM-RDQYMRTGEGFLCVFAIN 103 (190)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCSCCCTTC-CE-EEEEEEEETTEEEEEEEEECCC------------CTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHHcCCCccccCCcc-ce-EEEEEEEECCEEEEEEEEECCChHHHHHH-HHHhhCcCCEEEEEEECc
Confidence 59999999999976654433 2222211 11 12222223467788999999999999998 458999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 104 ~ 104 (190)
T 3con_A 104 N 104 (190)
T ss_dssp C
T ss_pred C
Confidence 6
No 89
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.76 E-value=1.5e-18 Score=94.07 Aligned_cols=77 Identities=13% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+... .....+.. . ........++..+.+.+||++|++++..+ +..+++.++++++|||++
T Consensus 9 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~D~~G~~~~~~~-~~~~~~~~~~~i~v~d~~ 85 (166)
T 2ce2_X 9 VGAGGVGKSALTIQLIQNHFVDECDPTIE-D-SYRKQVVIDGETCLLDILDTAGQEEYSAM-RDQYMRTGEGFLCVFAIN 85 (166)
T ss_dssp EESTTSSHHHHHHHHHHSSCCSCCCTTCC-E-EEEEEEEETTEEEEEEEEECCCCSSCCHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCcCccccCCccc-e-EEEEEEEECCEEEEEEEEECCCchhhhHH-HHHhhccCCEEEEEEECC
Confidence 58999999999976654433 22222111 1 12222223467788999999999999888 558999999999999997
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 86 ~ 86 (166)
T 2ce2_X 86 N 86 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 90
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.76 E-value=3.2e-19 Score=100.23 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=37.7
Q ss_pred CCCCCCcHhHHHHHHhcc---CCCCceeeecceeeeEEEeecCCc--eeEEEEEecCCCccccccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQK---MSPNETLFLEGTNKMTKEDIANSS--FLQYQLWDCPGQMDFQDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v 75 (81)
+|++|||||||++.+.+. +......+...+.......+ ++. .+.+.+||++|++.+..+ +..+++++|++|+|
T Consensus 26 ~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v 103 (208)
T 2yc2_C 26 VGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTI-PDTTVSVELFLLDTAGSDLYKEQ-ISQYWNGVYYAILV 103 (208)
T ss_dssp C----------------------------------CEEEEC-TTSSEEEEEEEEETTTTHHHHHH-HSTTCCCCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEE-CCcccEEEEEEEECCCcHHHHHH-HHHHHhhCcEEEEE
Confidence 699999999999766554 33333333222222222222 244 789999999999999988 55899999999999
Q ss_pred EEccC
Q psy9524 76 IDTSM 80 (81)
Q Consensus 76 ~D~~~ 80 (81)
||+++
T Consensus 104 ~d~~~ 108 (208)
T 2yc2_C 104 FDVSS 108 (208)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 99986
No 91
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.7e-18 Score=96.23 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=54.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+.+||++|++. ..+ +..+++.++++++|||++
T Consensus 34 ~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~-~~~-~~~~~~~~d~iilv~D~~ 109 (196)
T 2atv_A 34 FGRAGVGKSALVVRFLTKRFIWEYDPTLEST--YRHQATIDDEVVSMEILDTAGQED-TIQ-REGHMRWGEGFVLVYDIT 109 (196)
T ss_dssp ECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE--EEEEEEETTEEEEEEEEECCCCCC-CHH-HHHHHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHhCCCCcccCCCCCce--EEEEEEECCEEEEEEEEECCCCCc-ccc-hhhhhccCCEEEEEEECc
Confidence 599999999999666544 333322222211 222222346778999999999998 555 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 110 ~ 110 (196)
T 2atv_A 110 D 110 (196)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.76 E-value=2.2e-18 Score=96.10 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=51.3
Q ss_pred CCCCCCcHhHHHHHH-hccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVV-FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+ .+.+.....++ ... +......++..+.+++||++|++.++ +++.++++++|||++
T Consensus 26 vG~~~vGKSsL~~~~~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~i~v~d~~ 96 (184)
T 3ihw_A 26 VGNLSSGKSALVHRYLTGTYVQEESPE-GGR--FKKEIVVDGQSYLLLIRDEGGPPELQ------FAAWVDAVVFVFSLE 96 (184)
T ss_dssp ECCTTSCHHHHHHHHHHSSCCCCCCTT-CEE--EEEEEEETTEEEEEEEEECSSSCCHH------HHHHCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCC-cce--EEEEEEECCEEEEEEEEECCCChhhh------eecCCCEEEEEEECc
Confidence 699999999999554 44444433222 111 22333334778999999999998775 788899999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 97 ~ 97 (184)
T 3ihw_A 97 D 97 (184)
T ss_dssp C
T ss_pred C
Confidence 6
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.75 E-value=6.5e-19 Score=98.05 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=50.4
Q ss_pred CCCCCCcHhHHHHHHhccC---CCCceeeecceeeeEEEee--cCCceeEEEEEecCCCccccccchhhhhccCCEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKM---SPNETLFLEGTNKMTKEDI--ANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFV 75 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v 75 (81)
+|++|||||||++.+.+.. .....++............ .++..+.+++||++|+++|..+. ..++++++++++|
T Consensus 8 vG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~-~~~~~~~~~~i~v 86 (184)
T 2zej_A 8 VGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTH-PHFMTQRALYLAV 86 (184)
T ss_dssp ESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTS-HHHHHHSEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhh-HHHccCCcEEEEE
Confidence 6999999999998886632 2222222111111111111 02357889999999999999984 4899999999999
Q ss_pred EEccCC
Q psy9524 76 IDTSMG 81 (81)
Q Consensus 76 ~D~~~~ 81 (81)
||++++
T Consensus 87 ~d~~~~ 92 (184)
T 2zej_A 87 YDLSKG 92 (184)
T ss_dssp EEGGGC
T ss_pred EeCCcc
Confidence 999863
No 94
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=1.1e-18 Score=97.11 Aligned_cols=75 Identities=24% Similarity=0.364 Sum_probs=55.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+.... ...++.+.....+. ...+++.+||++|+++++.+ +..+++++|++++|||+++
T Consensus 28 ~G~~~~GKssli~~l~~~~~~----~~~~t~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 28 LGLDNAGKTSILYRLHLGDVV----TTVPTVGVNLETLQ-YKNISFEVWDLGGQTGVRPY-WRCYFSDTDAVIYVVDSTD 101 (189)
T ss_dssp EEETTSSHHHHHHHTCCSCCE----EECSSTTCCEEEEE-ETTEEEEEEEECCSSSSCCC-CSSSSTTCCEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHHcCCCC----CcCCCCceEEEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhhcCCEEEEEEeCCC
Confidence 589999999999777443222 22334333333333 34688999999999999998 5589999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 102 ~ 102 (189)
T 2x77_A 102 R 102 (189)
T ss_dssp C
T ss_pred H
Confidence 4
No 95
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.75 E-value=1.1e-17 Score=93.98 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+..... ..++...... ......++..+.+.+||++|++.++.+ +..+++.++++++|||++
T Consensus 11 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~-~~~i~~~g~~~~~~i~Dt~g~~~~~~~-~~~~~~~~~~~i~v~d~~ 88 (199)
T 2f9l_A 11 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA-TRSIQVDGKTIKAQIWDTAGQERYRRI-TSAYYRGAVGALLVYDIA 88 (199)
T ss_dssp ESSTTSSHHHHHHHHHHSCCCC---CCCSCEEE-EEEEEETTEEEEEEEEECSSGGGTTCC-CHHHHTTCSEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEEECCEEEEEEEEECCCchhhhhh-hHHHHhcCCEEEEEEECc
Confidence 6999999999998776654332 2222111111 122223477789999999999999988 448999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 89 ~ 89 (199)
T 2f9l_A 89 K 89 (199)
T ss_dssp C
T ss_pred C
Confidence 5
No 96
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.75 E-value=3.5e-18 Score=97.00 Aligned_cols=79 Identities=16% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+...+..........+..+.+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 17 vG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 95 (218)
T 4djt_A 17 IGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-KDVYYIGASGAILFFDVT 95 (218)
T ss_dssp ECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-CHHHHTTCSEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-HHHHhhcCCEEEEEEeCC
Confidence 699999999999666533 332222222222111222222244488999999999999988 559999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 96 ~ 96 (218)
T 4djt_A 96 S 96 (218)
T ss_dssp C
T ss_pred C
Confidence 6
No 97
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=1e-18 Score=96.60 Aligned_cols=75 Identities=25% Similarity=0.379 Sum_probs=51.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|++|||||||++.+.+... ....++.+.....+. .....+.+||++|++.+... +..+++++|++++|||+++
T Consensus 24 ~G~~~~GKssli~~l~~~~~----~~~~~t~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 24 LGLDGAGKTTILYRLQIGEV----VTTKPTIGFNVETLS-YKNLKLNVWDLGGQTSIRPY-WRCYYADTAAVIFVVDSTD 97 (183)
T ss_dssp EEETTSSHHHHHHHTCCSEE----EEECSSTTCCEEEEE-ETTEEEEEEEEC----CCTT-GGGTTTTEEEEEEEEETTC
T ss_pred ECCCCCCHHHHHHHHhcCCc----CccCCcCccceEEEE-ECCEEEEEEECCCCHhHHHH-HHHHhccCCEEEEEEECCC
Confidence 58999999999977653322 223344333333333 23588999999999999988 5589999999999999986
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 98 ~ 98 (183)
T 1moz_A 98 K 98 (183)
T ss_dssp T
T ss_pred H
Confidence 4
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.74 E-value=3e-19 Score=100.38 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=54.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC-CceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+++||||||++.+.+.... ....+...+........ ++..+.+.+||++|++.+..+ +..+++++|++|+|||++
T Consensus 39 vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 116 (199)
T 3l0i_B 39 IGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI-TSSYYRGAHGIIVVYDVT 116 (199)
T ss_dssp ECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC-SCC--CCCSEEEECC-CC
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH-HHHHhhcCCEEEEEEECC
Confidence 699999999999766544332 22222222222222223 367789999999999999998 448999999999999998
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 117 ~~ 118 (199)
T 3l0i_B 117 DQ 118 (199)
T ss_dssp CS
T ss_pred CH
Confidence 74
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.73 E-value=1.2e-17 Score=99.53 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=56.7
Q ss_pred CCCCCCcHhHHHHHHh-ccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVF-QKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+. +.+......++... +......++..+.+.+||++|++.+..+ +..+++++|++++|||++
T Consensus 161 ~G~~~~GKssli~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~d~~i~v~d~~ 237 (332)
T 2wkq_A 161 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--YSANVMVDGKPVNLGLWDTAGLEDYDRL-RPLSYPQTDVFLICFSLV 237 (332)
T ss_dssp EESTTSSHHHHHHHHHHSCCCCSCCCCSEEE--EEEEEEETTEEEEEEEEEECCCGGGTTT-GGGGCTTCSEEEEEEETT
T ss_pred ECCCCCChHHHHHHHHhCCCCcccCCcccce--eEEEEEECCEEEEEEEEeCCCchhhhHH-HHHhccCCCEEEEEEeCC
Confidence 5899999999996664 44444433332222 2222233477889999999999999988 558999999999999998
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 238 ~ 238 (332)
T 2wkq_A 238 S 238 (332)
T ss_dssp C
T ss_pred C
Confidence 6
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.73 E-value=1.2e-17 Score=104.71 Aligned_cols=75 Identities=24% Similarity=0.352 Sum_probs=58.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|.++||||||++.+.+...... .+|.+.....+. .+.+.+.+|||+|++.++.+ +..+++++|++|+|||+++
T Consensus 328 vG~~nvGKSsLl~~l~~~~~~~~----~~T~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~-~~~~~~~ad~~i~V~D~~~ 401 (497)
T 3lvq_E 328 LGLDAAGKTTILYKLKLGQSVTT----IPTVGFNVETVT-YKNVKFNVWDVGGQDKIRPL-WRHYYTGTQGLIFVVDCAD 401 (497)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCC----CCCSSEEEEEEE-SSSCEEEEEEECCCGGGSGG-GGGGGTTCCEEEEEEETTC
T ss_pred EcCCCCCHHHHHHHHhcCCCCCc----CCccceeEEEEE-eCCEEEEEEECCCcHHHHHH-HHHHhccCCEEEEEEECcc
Confidence 69999999999976655443332 335555555555 56789999999999999999 5599999999999999987
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 402 ~ 402 (497)
T 3lvq_E 402 R 402 (497)
T ss_dssp G
T ss_pred h
Confidence 3
No 101
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.58 E-value=2e-19 Score=101.37 Aligned_cols=78 Identities=14% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +......+.... +......++..+.+++||++|++++..+ +..+++++|++++|||++
T Consensus 36 ~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~d~iilv~D~~ 112 (204)
T 3th5_A 36 VGDGAVGKTCLLISYTTNAFPGEYIPTVFDN--YSANVMVDGKPVNLGLWDTAGQEDYDRL-RPLSYPQTDVFLICFSLV 112 (204)
Confidence 699999999999666443 333333322222 1222222366788999999999999998 558999999999999987
Q ss_pred CC
Q psy9524 80 MG 81 (81)
Q Consensus 80 ~~ 81 (81)
++
T Consensus 113 ~~ 114 (204)
T 3th5_A 113 SP 114 (204)
Confidence 63
No 102
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.73 E-value=2.8e-17 Score=92.09 Aligned_cols=78 Identities=13% Similarity=0.189 Sum_probs=56.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+...+. ..++..... .......++..+.+++||++|++++..+.. .+++.++++++|||++
T Consensus 35 vG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~-~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~-~~~~~~~~~i~v~d~~ 112 (191)
T 1oix_A 35 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF-ATRSIQVDGKTIKAQIWDTAGLERYRAITS-AYYRGAVGALLVYDIA 112 (191)
T ss_dssp EECTTSSHHHHHHHHHHSCCCCSCCCCCSEEE-EEEEEEETTEEEEEEEEEECSCCSSSCCCH-HHHTTCCEEEEEEETT
T ss_pred ECcCCCCHHHHHHHHhcCCCCCCCCCccceEE-EEEEEEECCEEEEEEEEECCCCcchhhhhH-HHhhcCCEEEEEEECc
Confidence 6999999999998886654433 222222111 122222347778899999999999998844 8999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 113 ~ 113 (191)
T 1oix_A 113 K 113 (191)
T ss_dssp C
T ss_pred C
Confidence 5
No 103
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.72 E-value=1.5e-17 Score=91.50 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|++|||||||++.+.+. +...+......+........ ....+.+||++|++.+..+. ..+++.+|++++|||++
T Consensus 14 ~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~Dt~G~~~~~~~~-~~~~~~~d~~i~v~d~~ 89 (178)
T 2lkc_A 14 MGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTV---NDKKITFLDTPGHEAFTTMR-ARGAQVTDIVILVVAAD 89 (178)
T ss_dssp ESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEE---TTEEEEESCCCSSSSSSCSC-CSSCCCCCEEEEEEETT
T ss_pred ECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEe---CCceEEEEECCCCHHHHHHH-HHHHhhCCEEEEEEECC
Confidence 599999999999766443 33333222222222221222 23567899999999999984 48999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 90 ~ 90 (178)
T 2lkc_A 90 D 90 (178)
T ss_dssp C
T ss_pred C
Confidence 6
No 104
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=99.56 Aligned_cols=75 Identities=24% Similarity=0.328 Sum_probs=52.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|+++||||||++.+.+..... ..+|.......+. ...+++.||||+|++.|..+ +..+++.+|++|+|||+++
T Consensus 171 vG~~~vGKSsLl~~l~~~~~~~----~~pT~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~-~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 171 VGLDAAGKTTILYKLKLGEIVT----TIPTIGFNVETVE-YKNISFTVWDVGGQDKIRPL-WRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp EESTTSSHHHHHHHTCSSCCEE----EEEETTEEEEEEE-ETTEEEEEEECC-----CCS-HHHHHTTEEEEEEEEETTC
T ss_pred ECCCCccHHHHHHHHhCCCCCC----cccccceEEEEEe-cCcEEEEEEECCCCHhHHHH-HHHHhccCCEEEEEEECCc
Confidence 5999999999997775443222 2234444444444 56689999999999999999 5599999999999999976
Q ss_pred C
Q psy9524 81 G 81 (81)
Q Consensus 81 ~ 81 (81)
+
T Consensus 245 ~ 245 (329)
T 3o47_A 245 R 245 (329)
T ss_dssp S
T ss_pred h
Confidence 3
No 105
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.70 E-value=4.8e-17 Score=91.25 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=50.8
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCcc-ccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD-FQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|++|||||||++.+.+... .....++..+. .......++..+++.+||++|++. ++.+ ...|++.++++++|||
T Consensus 12 vG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~-~~~~~~~~~~~i~v~d 89 (192)
T 2cjw_A 12 IGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT-YERTLMVDGESATIILLDMWENKGENEWL-HDHCMQVGDAYLIVYS 89 (192)
T ss_dssp ECSTTSSHHHHHHHHHHHSCCC----GGGCTTE-EEEEEEETTEEEEEEEECCCCC----CTT-GGGHHHHCSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCcCCcCccccccceeE-EEEEEEECCeEEEEEEEEeccCcchhhhH-HHhhcccCCEEEEEEE
Confidence 69999999999977754221 11111122222 222233347788999999999886 4555 5589999999999999
Q ss_pred ccC
Q psy9524 78 TSM 80 (81)
Q Consensus 78 ~~~ 80 (81)
++|
T Consensus 90 v~~ 92 (192)
T 2cjw_A 90 ITD 92 (192)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
No 106
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.70 E-value=3.3e-17 Score=88.78 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=47.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc-------cccchhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF-------QDFDAELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~~~~~~i 73 (81)
+|++|||||||++.+.+............+......... .....+.+||++|++.+ ... +..+++.+++++
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~-~~~~~~~~~~~i 84 (161)
T 2dyk_A 7 VGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVE-TDRGRFLLVDTGGLWSGDKWEKKIQEK-VDRALEDAEVVL 84 (161)
T ss_dssp ECCTTSSHHHHHHHHHHCCC-----------CCEEEEEE-ETTEEEEEEECGGGCSSSSCCHHHHHH-HHHHTTTCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEE-eCCceEEEEECCCCCCccchHHHHHHH-HHHHHHhCCEEE
Confidence 599999999999777554322111111111111222222 23347899999999873 233 336889999999
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
+|+|+++
T Consensus 85 ~v~d~~~ 91 (161)
T 2dyk_A 85 FAVDGRA 91 (161)
T ss_dssp EEEESSS
T ss_pred EEEECCC
Confidence 9999986
No 107
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.4e-17 Score=92.65 Aligned_cols=78 Identities=10% Similarity=0.083 Sum_probs=53.2
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCcc-ccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD-FQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~-~~~~~~~~~~~~~~~~i~v~D 77 (81)
||++|||||||++.+.+... .....++..+. +......++..+++.+||++|++. ++.+ ...|++.++++|+|||
T Consensus 43 vG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~-~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l-~~~~~~~a~~~ilVyd 120 (211)
T 2g3y_A 43 IGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT-YERTLMVDGESATIILLDMWENKGENEWL-HDHCMQVGDAYLIVYS 120 (211)
T ss_dssp ECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE-EEEEEEETTEEEEEEEECCTTTTHHHHHH-HHCCCCCCSEEEEEEE
T ss_pred ECCCCCCHHHHHHHHHhCCCCCCCcCCccceee-EEEEEEECCeeeEEEEeecCCCcchhhhH-HHHHHhhCCEEEEEEE
Confidence 69999999999977754221 12222222222 223333347788999999999987 4445 4478999999999999
Q ss_pred ccC
Q psy9524 78 TSM 80 (81)
Q Consensus 78 ~~~ 80 (81)
+++
T Consensus 121 vt~ 123 (211)
T 2g3y_A 121 ITD 123 (211)
T ss_dssp TTC
T ss_pred CCC
Confidence 986
No 108
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.67 E-value=1e-16 Score=95.59 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc--------cccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF--------QDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~--------~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... ....++.+|||||+... ....+ .+++.+|++
T Consensus 13 vG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~-~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~-~~l~~ad~i 90 (301)
T 1wf3_A 13 VGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT-EGRRQIVFVDTPGLHKPMDALGEFMDQEVY-EALADVNAV 90 (301)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE-ETTEEEEEEECCCCCCCCSHHHHHHHHHHH-HHTSSCSEE
T ss_pred ECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE-eCCcEEEEecCccccchhhHHHHHHHHHHH-HHHhcCCEE
Confidence 699999999999777654332111111111111112222 45688999999998763 33423 789999999
Q ss_pred EEEEEccCC
Q psy9524 73 IFVIDTSMG 81 (81)
Q Consensus 73 i~v~D~~~~ 81 (81)
++|+|++++
T Consensus 91 l~VvD~~~~ 99 (301)
T 1wf3_A 91 VWVVDLRHP 99 (301)
T ss_dssp EEEEETTSC
T ss_pred EEEEECCCC
Confidence 999999763
No 109
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.66 E-value=1.6e-16 Score=87.72 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=48.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc--------chhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF--------DAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~~~~~~ 72 (81)
+|++|||||||++.+.+............+..+....+. .....+.+||++|++.+... .+ .+++.+|++
T Consensus 10 vG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~ad~~ 87 (172)
T 2gj8_A 10 AGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIH-IDGMPLHIIDTAGLREASDEVERIGIERAW-QEIEQADRV 87 (172)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEE-ETTEEEEEEECCCCSCCSSHHHHHHHHHHH-HHHHTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEE-ECCeEEEEEECCCcccchhHHHHHHHHHHH-HHHHhCCEE
Confidence 599999999999888665322111111111111111111 12345899999999764321 12 468999999
Q ss_pred EEEEEccCC
Q psy9524 73 IFVIDTSMG 81 (81)
Q Consensus 73 i~v~D~~~~ 81 (81)
++|||++++
T Consensus 88 i~v~D~~~~ 96 (172)
T 2gj8_A 88 LFMVDGTTT 96 (172)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 999999863
No 110
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.66 E-value=3.3e-16 Score=85.79 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=48.1
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc------cchhhhhc--cCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD------FDAELIFA--RCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~~--~~~~ 71 (81)
+|++|||||||++.+.+... ....+.. +.......+. .....+++|||+|++.+.. + ...|++ ++++
T Consensus 9 vG~~gvGKStL~~~l~~~~~~~~~~~~~--t~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~~ 84 (165)
T 2wji_A 9 IGNPNVGKSTIFNALTGENVYIGNWPGV--TVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSIDEII-ARDYIINEKPDL 84 (165)
T ss_dssp ECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEE-ETTEEEEEEECCCCSCSSSSSHHHHH-HHHHHHHHCCSE
T ss_pred ECCCCCCHHHHHHHHhCCCeeccCCCCc--ceeeeEEEEE-ECCcEEEEEECCCcccCCCcchhHHH-HHHHHhcCCCCE
Confidence 69999999999987765432 2221111 1111111111 1246899999999998753 3 236665 8999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|+++
T Consensus 85 ~i~v~D~~~ 93 (165)
T 2wji_A 85 VVNIVDATA 93 (165)
T ss_dssp EEEEEETTC
T ss_pred EEEEecCCc
Confidence 999999875
No 111
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=5.2e-17 Score=92.13 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=51.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhcc----CCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFAR----CGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~----~~~~i~v~ 76 (81)
+|++|||||||++.+.+...........++.. .......+.+||++|++.++.. +..+++. ++++|+||
T Consensus 18 ~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~~i~v~ 90 (218)
T 1nrj_B 18 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------ADYDGSGVTLVDFPGHVKLRYK-LSDYLKTRAKFVKGLIFMV 90 (218)
T ss_dssp ECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE------TTGGGSSCEEEECCCCGGGTHH-HHHHHHHHGGGEEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCeeeecCceEE------EEeeCceEEEEECCCcHHHHHH-HHHHHHhccccCCEEEEEE
Confidence 59999999999977755543221111122211 1125577999999999999887 4588887 89999999
Q ss_pred Ecc
Q psy9524 77 DTS 79 (81)
Q Consensus 77 D~~ 79 (81)
|++
T Consensus 91 D~~ 93 (218)
T 1nrj_B 91 DST 93 (218)
T ss_dssp ETT
T ss_pred ECC
Confidence 998
No 112
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.66 E-value=4.5e-17 Score=90.81 Aligned_cols=72 Identities=22% Similarity=0.261 Sum_probs=48.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhcc----CCEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFAR----CGALIFVI 76 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~----~~~~i~v~ 76 (81)
+|++|||||||++.+.+...........++.. .+...+.+.+||++|++.+... +..+++. ++++|+||
T Consensus 54 vG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~l~Dt~G~~~~~~~-~~~~~~~~~~~~~~~i~v~ 126 (193)
T 2ged_A 54 AGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA------ADYDGSGVTLVDFPGHVKLRYK-LSDYLKTRAKFVKGLIFMV 126 (193)
T ss_dssp ECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCC-HHHHHHHHGGGEEEEEEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCcccccCCCcee------eeecCCeEEEEECCCCchHHHH-HHHHHHhhcccCCEEEEEE
Confidence 69999999999977765543221111122211 1125567899999999999887 4477776 89999999
Q ss_pred Ecc
Q psy9524 77 DTS 79 (81)
Q Consensus 77 D~~ 79 (81)
|++
T Consensus 127 d~~ 129 (193)
T 2ged_A 127 DST 129 (193)
T ss_dssp ETT
T ss_pred ECC
Confidence 997
No 113
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.63 E-value=4.5e-16 Score=89.12 Aligned_cols=77 Identities=21% Similarity=0.297 Sum_probs=47.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCC------cc----ccccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ------MD----FQDFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~------~~----~~~~~~~~~~~~~~ 70 (81)
+|++|||||||++.+.+..... ......+......... .....+.+|||||+ +. +..+ . .+++.+|
T Consensus 35 vG~~~vGKSsLin~l~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~-~~~~~~d 110 (228)
T 2qu8_A 35 SGAPNVGKSSFMNIVSRANVDV-QSYSFTTKNLYVGHFD-HKLNKYQIIDTPGLLDRAFENRNTIEMTTI-T-ALAHING 110 (228)
T ss_dssp ECSTTSSHHHHHHHHTTTCEEE-ECC-----CEEEEEEE-ETTEEEEEEECTTTTTSCGGGCCHHHHHHH-H-HHHTSSE
T ss_pred ECCCCCCHHHHHHHHhCCCCcc-CCCCCcceeeeeeeee-cCCCeEEEEECCCCcCcccchhhhHHHHHH-H-Hhhcccc
Confidence 6999999999997775542211 1111111122222222 24478999999999 33 2223 2 5678899
Q ss_pred EEEEEEEccCC
Q psy9524 71 ALIFVIDTSMG 81 (81)
Q Consensus 71 ~~i~v~D~~~~ 81 (81)
++|+|||++++
T Consensus 111 ~~i~v~d~~~~ 121 (228)
T 2qu8_A 111 VILFIIDISEQ 121 (228)
T ss_dssp EEEEEEETTCT
T ss_pred EEEEEEecccc
Confidence 99999999863
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.63 E-value=8.6e-16 Score=91.77 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=52.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccc----------ccchhhhhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQ----------DFDAELIFARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~----------~~~~~~~~~~~~ 70 (81)
+|.+|||||||++.+.+............+..............++.+|||||+..+. .. ...+++.+|
T Consensus 16 vG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~-~~~~l~~aD 94 (308)
T 3iev_A 16 VGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI-AKQSLEEAD 94 (308)
T ss_dssp ECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH-HHHHHHHCS
T ss_pred ECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH-HHHHhhcCC
Confidence 5999999999998776654332112222222222222221337889999999997655 34 337889999
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++++|+|+++
T Consensus 95 ~il~VvD~~~ 104 (308)
T 3iev_A 95 VILFMIDATE 104 (308)
T ss_dssp EEEEEEETTT
T ss_pred EEEEEEeCCC
Confidence 9999999986
No 115
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.61 E-value=4.4e-16 Score=86.78 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=47.7
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCC----------CccccccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG----------QMDFQDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~~~~~~~ 69 (81)
+|++|||||||++.+.+.. ..........+......... . ++.+||++| ++.+..+ +..+++.+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (195)
T 1svi_A 29 AGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-D---ELHFVDVPGYGFAKVSKSEREAWGRM-IETYITTR 103 (195)
T ss_dssp EEBTTSSHHHHHHHHHTC-------------CCEEEEEET-T---TEEEEECCCBCCCSSCHHHHHHHHHH-HHHHHHHC
T ss_pred ECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-C---cEEEEECCCCCccccCHHHHHHHHHH-HHHHHhhh
Confidence 5999999999997776553 33332222223222222221 2 589999999 7777777 44788877
Q ss_pred ---CEEEEEEEccCC
Q psy9524 70 ---GALIFVIDTSMG 81 (81)
Q Consensus 70 ---~~~i~v~D~~~~ 81 (81)
+++++|+|++++
T Consensus 104 ~~~~~~i~v~d~~~~ 118 (195)
T 1svi_A 104 EELKAVVQIVDLRHA 118 (195)
T ss_dssp TTEEEEEEEEETTSC
T ss_pred hcCCEEEEEEECCCC
Confidence 999999998763
No 116
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.60 E-value=2e-15 Score=83.74 Aligned_cols=77 Identities=13% Similarity=0.158 Sum_probs=48.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc------cchhhhhc--cCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD------FDAELIFA--RCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~~--~~~~~ 72 (81)
+|++|||||||++.+.+...... .....+.......+. .....+.+||++|++.+.. + +..+++ .++++
T Consensus 13 vG~~gvGKStL~~~l~~~~~~~~-~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (188)
T 2wjg_A 13 IGNPNVGKSTIFNALTGENVYIG-NWPGVTVEKKEGEFE-YNGEKFKVVDLPGVYSLTANSIDEII-ARDYIINEKPDLV 89 (188)
T ss_dssp ECSTTSSHHHHHHHHHTTCEEEE-ECTTSCCEEEEEEEE-ETTEEEEEEECCCCSCCSSSSHHHHH-HHHHHHHHCCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccc-CCCCeeccceEEEEE-eCCcEEEEEECCCcCccccccHHHHH-HHHHHhccCCCEE
Confidence 69999999999987765321110 001111112222222 2357899999999998853 3 336665 49999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|.++
T Consensus 90 i~v~d~~~ 97 (188)
T 2wjg_A 90 VNIVDATA 97 (188)
T ss_dssp EEEEEGGG
T ss_pred EEEecchh
Confidence 99999864
No 117
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.59 E-value=4.7e-15 Score=86.78 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=51.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-----hhhhh--ccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-----AELIF--ARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-----~~~~~--~~~~~~i 73 (81)
+|++|||||||++.+.+..... ......+.......+. .....+.+||+||+..+.... ...|+ ..+|+++
T Consensus 11 vG~~nvGKTsL~n~l~g~~~~~-~~~pg~tv~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii 88 (258)
T 3a1s_A 11 AGCPNVGKTSLFNALTGTKQYV-ANWPGVTVEKKEGVFT-YKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVI 88 (258)
T ss_dssp ECCTTSSHHHHHHHHHTTCEEE-EECTTSCCEEEEEEEE-ETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEE
T ss_pred ECCCCCCHHHHHHHHHCCCCcc-cCCCCceEEEEEEEEE-ECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEE
Confidence 5999999999998776542211 1111222222332333 345789999999999887531 13565 5899999
Q ss_pred EEEEccC
Q psy9524 74 FVIDTSM 80 (81)
Q Consensus 74 ~v~D~~~ 80 (81)
+|+|+++
T Consensus 89 ~V~D~t~ 95 (258)
T 3a1s_A 89 LVADSVN 95 (258)
T ss_dssp EEEETTS
T ss_pred EEeCCCc
Confidence 9999986
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.58 E-value=9.4e-16 Score=97.01 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=51.6
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEE-----E-eec-CCceeEEEEEecCCCccccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTK-----E-DIA-NSSFLQYQLWDCPGQMDFQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~-----~-~~~-~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+.. .....++...+..... . ... ++..+.+.+||++|++.+..+ ...+++.++++
T Consensus 47 vG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~-~~~~l~~~d~i 125 (535)
T 3dpu_A 47 IGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHAS-HQFFMTRSSVY 125 (535)
T ss_dssp ESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTT-CHHHHHSSEEE
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHH-HHHHccCCcEE
Confidence 6999999999997775543 3333222222221110 0 011 244689999999999999998 44899999999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|||+++
T Consensus 126 i~V~D~s~ 133 (535)
T 3dpu_A 126 MLLLDSRT 133 (535)
T ss_dssp EEEECGGG
T ss_pred EEEEeCCC
Confidence 99999875
No 119
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.58 E-value=2.6e-15 Score=93.17 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=45.5
Q ss_pred CCCCCCcHhHHHHHHhccCCC--CceeeecceeeeEEEeecCCceeEEEEEecCCCccc---------cccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF---------QDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~---------~~~~~~~~~~~~ 69 (81)
+|.+|||||||++.+.++... ...+.+..........+ ....+++|||+|++.. +.. ...+++.+
T Consensus 7 vG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~---~~~~~~l~DT~G~~~~~~~~~~~~~~~~-~~~~~~~a 82 (439)
T 1mky_A 7 VGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW---YGKTFKLVDTCGVFDNPQDIISQKMKEV-TLNMIREA 82 (439)
T ss_dssp ECCTTSSHHHHHHHHHC--------------CCSEEEEEE---TTEEEEEEECTTTTSSGGGCCCHHHHHH-HHHHHTTC
T ss_pred ECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEE---CCeEEEEEECCCccccccchHHHHHHHH-HHHHHHhC
Confidence 699999999999777654322 11111111111122222 2346899999998752 223 33789999
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++++|+|+++
T Consensus 83 d~il~V~D~~~ 93 (439)
T 1mky_A 83 DLVLFVVDGKR 93 (439)
T ss_dssp SEEEEEEETTT
T ss_pred CEEEEEEECCC
Confidence 99999999875
No 120
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.58 E-value=4.2e-15 Score=87.22 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=50.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc------cchhhhh--ccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD------FDAELIF--ARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~--~~~~~~ 72 (81)
+|++|||||||++.+.+... ........+......... .....+.+||+||+..+.. + ...|+ .++|++
T Consensus 9 vG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~-~~~~~~~~~~d~v 85 (271)
T 3k53_A 9 VGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIME-YREKEFLVVDLPGIYSLTAHSIDELI-ARNFILDGNADVI 85 (271)
T ss_dssp EECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEE-ETTEEEEEEECCCCSCCCSSCHHHHH-HHHHHHTTCCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEE-ECCceEEEEeCCCccccccCCHHHHH-HHHhhhccCCcEE
Confidence 59999999999988865532 111111122222222222 3345699999999998876 4 33666 689999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+++
T Consensus 86 i~v~D~~~ 93 (271)
T 3k53_A 86 VDIVDSTC 93 (271)
T ss_dssp EEEEEGGG
T ss_pred EEEecCCc
Confidence 99999875
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.58 E-value=3.7e-15 Score=87.89 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=50.7
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc------cchhhhhc--cCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD------FDAELIFA--RCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~------~~~~~~~~--~~~~ 71 (81)
+|++|||||||++.+.+.. .....+ ..+.......+. . ...+++||+||++.+.. + .+.|+. .+|+
T Consensus 9 vG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~-~-~~~l~l~DtpG~~~~~~~~~~e~v-~~~~~~~~~~d~ 83 (272)
T 3b1v_A 9 IGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVK-K-NKDLEIQDLPGIYSMSPYSPEAKV-ARDYLLSQRADS 83 (272)
T ss_dssp ECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECT-T-CTTEEEEECCCCSCSSCSSHHHHH-HHHHHHTTCCSE
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEe-c-CCeEEEEECCCcCccCCCChHHHH-HHHHHhcCCCCE
Confidence 6999999999998886642 211111 122222222333 3 67899999999998863 4 336776 5999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|+++
T Consensus 84 vi~V~D~t~ 92 (272)
T 3b1v_A 84 ILNVVDATN 92 (272)
T ss_dssp EEEEEEGGG
T ss_pred EEEEecCCc
Confidence 999999875
No 122
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=4.1e-15 Score=86.96 Aligned_cols=78 Identities=13% Similarity=0.140 Sum_probs=49.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhc---------cCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFA---------RCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~---------~~~~ 71 (81)
+|..|+|||||++.+.++...........+......... .....+.+|||||++.+..... .+++ .+++
T Consensus 42 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~liDTpG~~~~~~~~~-~~~~~i~~~l~~~~~~~ 119 (262)
T 3def_A 42 LGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRT-MGGFTINIIDTPGLVEAGYVNH-QALELIKGFLVNRTIDV 119 (262)
T ss_dssp EECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEE-ETTEEEEEEECCCSEETTEECH-HHHHHHHHHTTTCEECE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEE-ECCeeEEEEECCCCCCcccchH-HHHHHHHHHHhcCCCCE
Confidence 599999999999777654321111111112222222222 3456899999999998877633 4544 7899
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|+.+
T Consensus 120 il~V~~~d~ 128 (262)
T 3def_A 120 LLYVDRLDV 128 (262)
T ss_dssp EEEEEESSC
T ss_pred EEEEEcCCC
Confidence 999998764
No 123
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.57 E-value=1e-15 Score=86.97 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=50.0
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCC----------ccccccchhhhhcc-
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ----------MDFQDFDAELIFAR- 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~~~~- 68 (81)
+|.+|||||||++.+.+.. ..........+...............+.||||||. +.+..+ ...|++.
T Consensus 35 ~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~-~~~~~~~~ 113 (223)
T 4dhe_A 35 AGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL-LSSYLQTR 113 (223)
T ss_dssp EESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH-HHHHHHHC
T ss_pred EcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH-HHHHHhcC
Confidence 5899999999998886653 11111111222222333332245678999999994 444555 3367766
Q ss_pred --CCEEEEEEEccC
Q psy9524 69 --CGALIFVIDTSM 80 (81)
Q Consensus 69 --~~~~i~v~D~~~ 80 (81)
+|++++|+|+++
T Consensus 114 ~~~d~vi~v~d~~~ 127 (223)
T 4dhe_A 114 PQLCGMILMMDARR 127 (223)
T ss_dssp TTEEEEEEEEETTS
T ss_pred cCcCEEEEEEeCCC
Confidence 777999999875
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.57 E-value=1.4e-15 Score=94.35 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=45.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc--------cccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM--------DFQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~--------~~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............|......... .....+.+|||+|++ .+... ...+++.+|++
T Consensus 9 vG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~~~~~-~~~~~~~ad~i 86 (436)
T 2hjg_A 9 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDEPFLAQIRQQ-AEIAMDEADVI 86 (436)
T ss_dssp ECSTTSSHHHHHHHHEEEECC-----------CEEEECT-TCSSCCEEEC---------CHHHHHHHH-HHHHHHHCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEE-ECCceEEEEECCCCCCcchhHHHHHHHH-HHHHHHhCCEE
Confidence 699999999999888665332211122222222222222 345679999999986 45555 34789999999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|+|+++
T Consensus 87 l~vvD~~~ 94 (436)
T 2hjg_A 87 IFMVNGRE 94 (436)
T ss_dssp EEEEETTT
T ss_pred EEEEeCCC
Confidence 99999876
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.56 E-value=7e-15 Score=86.01 Aligned_cols=77 Identities=17% Similarity=0.143 Sum_probs=50.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----------cchhhhh--cc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----------FDAELIF--AR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----------~~~~~~~--~~ 68 (81)
+|.+|||||||++.+.+..... ......+.......+. .....+.+||+||+..+.. + .+.|+ ++
T Consensus 7 vG~~n~GKSTL~n~L~g~~~~v-~~~pg~Tv~~~~~~~~-~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i-~~~~~~~~~ 83 (256)
T 3iby_A 7 IGNPNCGKTTLFNALTNANQRV-GNWPGVTVEKKTGEFL-LGEHLIEITDLPGVYSLVANAEGISQDEQI-AAQSVIDLE 83 (256)
T ss_dssp EESTTSSHHHHHHHHHTTSEEE-EECTTSSSEEEEEEEE-ETTEEEEEEECCCCSSCC------CHHHHH-HHHHHHHSC
T ss_pred ECCCCCCHHHHHHHHHCCCCCc-cCCCCceEEEEEEEEE-ECCeEEEEEeCCCcccccccccCCCHHHHH-HHHHHhhCC
Confidence 5999999999998886652111 1111122222222222 2335899999999988764 3 34677 89
Q ss_pred CCEEEEEEEccC
Q psy9524 69 CGALIFVIDTSM 80 (81)
Q Consensus 69 ~~~~i~v~D~~~ 80 (81)
+|++|+|+|+++
T Consensus 84 ~d~vi~VvDas~ 95 (256)
T 3iby_A 84 YDCIINVIDACH 95 (256)
T ss_dssp CSEEEEEEEGGG
T ss_pred CCEEEEEeeCCC
Confidence 999999999875
No 126
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.56 E-value=6e-16 Score=90.26 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCcHhHHHHHHhc----cCCCCceeee-cceeeeEEE-------------eecCCceeEEEEEe----------------
Q psy9524 5 RSGKTSIQKVVFQ----KMSPNETLFL-EGTNKMTKE-------------DIANSSFLQYQLWD---------------- 50 (81)
Q Consensus 5 ~vGKTsll~~l~~----~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~l~~~D---------------- 50 (81)
|||||||++.+.+ .+...+.+++ ......... ...++..+.++|||
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~i~D~~~~~D~~~~~~~~~~ 117 (255)
T 3c5h_A 38 GIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECKMHIVEQTEFIDDQTFQPHRST 117 (255)
T ss_dssp CCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------CEEEEEECCCEETTTCSBTTGG
T ss_pred CcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEEEEEEEcccccccccccccccc
Confidence 9999999977755 2333333322 111100000 00135778999999
Q ss_pred -------cCCCccccccchhhhhc---------------------cCCEEEEEEEccCC
Q psy9524 51 -------CPGQMDFQDFDAELIFA---------------------RCGALIFVIDTSMG 81 (81)
Q Consensus 51 -------~~G~~~~~~~~~~~~~~---------------------~~~~~i~v~D~~~~ 81 (81)
++|+++|..+ +..+++ ++|++|+|||++++
T Consensus 118 ~~~~~~~~~g~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 118 ALQPYIKRAAATKLASA-EKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp GCCCHHHHHTCSEEECT-TCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred ccccccccchhhhhhhh-hhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 8888988888 447877 79999999999873
No 127
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.54 E-value=4.1e-15 Score=82.61 Aligned_cols=75 Identities=19% Similarity=0.279 Sum_probs=49.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC----------CccccccchhhhhccC-
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG----------QMDFQDFDAELIFARC- 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~~~~~~~- 69 (81)
+|++|||||||++.+.+............+........ ..++.+||++| ++.+..+ +..+++.+
T Consensus 29 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~----~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~~ 103 (195)
T 3pqc_A 29 VGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLV----NSKYYFVDLPGYGYAKVSKKERMLWKRL-VEDYFKNRW 103 (195)
T ss_dssp EEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEE----TTTEEEEECCCBSSSCCCHHHHHHHHHH-HHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEE----CCcEEEEECCCCccccCChhhHHHHHHH-HHHHHhcCc
Confidence 59999999999977766543322222222222222211 23578999999 6667777 44777776
Q ss_pred --CEEEEEEEccC
Q psy9524 70 --GALIFVIDTSM 80 (81)
Q Consensus 70 --~~~i~v~D~~~ 80 (81)
+++++|+|.++
T Consensus 104 ~~~~vi~v~d~~~ 116 (195)
T 3pqc_A 104 SLQMVFLLVDGRI 116 (195)
T ss_dssp TEEEEEEEEETTS
T ss_pred CceEEEEEecCCC
Confidence 89999999875
No 128
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.54 E-value=1.6e-14 Score=84.10 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=48.4
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccch----------hhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDA----------ELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~----------~~~~~~~ 69 (81)
+|.+|||||||++.+.+.. ..........+......... .....+.||||||+..+..... ..+++.+
T Consensus 28 vG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~ 106 (260)
T 2xtp_A 28 VGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGS-WGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGP 106 (260)
T ss_dssp EECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEE-ETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCC
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEE-eCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 5999999999997775443 22111111012222222222 3446799999999876543211 1377899
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++|+|+|+++
T Consensus 107 d~il~V~d~~~ 117 (260)
T 2xtp_A 107 HVLLLVTQLGR 117 (260)
T ss_dssp SEEEEEEETTC
T ss_pred cEEEEEEeCCC
Confidence 99999999864
No 129
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=83.77 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=47.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCCc-----------cccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM-----------DFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-----------~~~~~~~~~~~~~ 68 (81)
+|++|||||||++.+.+..... .......+......... .....+.+|||||.. .+... ...+++.
T Consensus 35 vG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~-~~~~~~~ 112 (239)
T 3lxx_A 35 VGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSS-WKETELVVVDTPGIFDTEVPNAETSKEIIRC-ILLTSPG 112 (239)
T ss_dssp ECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEE-ETTEEEEEEECCSCC-----CHHHHHHHHHH-HHHTTTC
T ss_pred ECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEE-eCCceEEEEECCCccCCCCCHHHHHHHHHHH-HHhcCCC
Confidence 6999999999998776654432 22211222222222222 334678999999943 34444 2256678
Q ss_pred CCEEEEEEEccC
Q psy9524 69 CGALIFVIDTSM 80 (81)
Q Consensus 69 ~~~~i~v~D~~~ 80 (81)
++++|+|+|++.
T Consensus 113 ~~~~l~v~d~~~ 124 (239)
T 3lxx_A 113 PHALLLVVPLGR 124 (239)
T ss_dssp CSEEEEEEETTC
T ss_pred CcEEEEEeeCCC
Confidence 899999999853
No 130
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.54 E-value=4.9e-15 Score=92.97 Aligned_cols=78 Identities=13% Similarity=0.188 Sum_probs=38.9
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc-------hhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD-------AELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~-------~~~~~~~~~~ 71 (81)
+|.+|||||||++.+.+... ....+. .+.......+. ...+.+.+|||+|++.+.... ...+++.+|+
T Consensus 239 vG~~nvGKSSLln~L~~~~~a~vs~~~g--tT~d~~~~~i~-~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 315 (476)
T 3gee_A 239 AGKPNAGKSTLLNTLLGQERAIVSHMPG--TTRDYIEECFI-HDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315 (476)
T ss_dssp ECCTTSSHHHHHHHCC--------------------CEEEE-ETTEEEEEEC--------------------CCCSSCSE
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCC--ceEEEEEEEEE-ECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCE
Confidence 59999999999987755421 111111 11112112222 244679999999998765431 1257899999
Q ss_pred EEEEEEccCC
Q psy9524 72 LIFVIDTSMG 81 (81)
Q Consensus 72 ~i~v~D~~~~ 81 (81)
+++|+|++++
T Consensus 316 vl~VvD~s~~ 325 (476)
T 3gee_A 316 ILYLLDLGTE 325 (476)
T ss_dssp EEEEEETTTC
T ss_pred EEEEEECCCC
Confidence 9999999864
No 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=1.3e-15 Score=94.54 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=47.1
Q ss_pred CCCCCCcHhHHHHHHhccCCC--CceeeecceeeeEEEeecCCceeEEEEEecCCC----------ccccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ----------MDFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~~~~ 68 (81)
+|.+|||||||++.+.+.... .....+ +.......+. .....+.+|||||+ +.|..++...+++.
T Consensus 181 vG~~nvGKSSLin~l~~~~~~~~~~~~gt--T~d~~~~~~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 257 (436)
T 2hjg_A 181 IGRPNVGKSSLVNAMLGEERVIVSNVAGT--TRDAVDTSFT-YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 257 (436)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEEC-----------CCEEEE-ETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHhCCCceeecCCCCc--eeeeeEEEEE-ECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHh
Confidence 699999999999877654321 111111 1111111111 22345899999998 44444423258899
Q ss_pred CCEEEEEEEccCC
Q psy9524 69 CGALIFVIDTSMG 81 (81)
Q Consensus 69 ~~~~i~v~D~~~~ 81 (81)
+|++++|+|++++
T Consensus 258 ad~~llv~D~~~~ 270 (436)
T 2hjg_A 258 SEVVAVVLDGEEG 270 (436)
T ss_dssp CSEEEEEEETTTC
T ss_pred CCEEEEEEcCCcC
Confidence 9999999999863
No 132
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.53 E-value=2.4e-14 Score=84.32 Aligned_cols=78 Identities=22% Similarity=0.206 Sum_probs=48.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc---------hhhhh--ccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD---------AELIF--ARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~---------~~~~~--~~~ 69 (81)
+|.+|||||||++.+.+.... .......+.......+. .....+.+||+||+..+.... ...|+ +.+
T Consensus 9 vG~~n~GKSTLin~l~g~~~~-v~~~~g~t~~~~~~~~~-~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~ 86 (274)
T 3i8s_A 9 IGNPNSGKTTLFNQLTGSRQR-VGNWAGVTVERKEGQFS-TTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDA 86 (274)
T ss_dssp EECTTSSHHHHHHHHHTTCEE-EEECTTSSSEEEEEEEE-CSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCC
T ss_pred ECCCCCCHHHHHHHHhCCCcc-cCCCCCeeEEEEEEEEE-eCCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCC
Confidence 599999999999888665321 11111112222222222 334678999999998877310 22333 799
Q ss_pred CEEEEEEEccC
Q psy9524 70 GALIFVIDTSM 80 (81)
Q Consensus 70 ~~~i~v~D~~~ 80 (81)
|++|+|+|+++
T Consensus 87 d~ii~VvD~~~ 97 (274)
T 3i8s_A 87 DLLINVVDASN 97 (274)
T ss_dssp SEEEEEEEGGG
T ss_pred CEEEEEecCCC
Confidence 99999999875
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.51 E-value=5.7e-15 Score=92.04 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=50.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCC--------CccccccchhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG--------QMDFQDFDAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G--------~~~~~~~~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+............+......... .....+.+|||+| ++.++.. ...+++.+|++
T Consensus 29 vG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~-~~~~~~~liDT~G~~~~~~~~~~~~~~~-~~~~~~~ad~i 106 (456)
T 4dcu_A 29 VGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAE-WLNYDFNLIDTGGIDIGDEPFLAQIRQQ-AEIAMDEADVI 106 (456)
T ss_dssp ECSSSSSHHHHHHHHEEEEEC-----------CEEEECT-TCSSCCEEECCCC------CCHHHHHHH-HHHHHHHCSEE
T ss_pred ECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEE-ECCceEEEEECCCCCCcchHHHHHHHHH-HHhhHhhCCEE
Confidence 699999999999888664322111111222222222222 4556899999999 6677776 44899999999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
|+|+|..+
T Consensus 107 l~VvD~~~ 114 (456)
T 4dcu_A 107 IFMVNGRE 114 (456)
T ss_dssp EEEEESSS
T ss_pred EEEEeCCC
Confidence 99999875
No 134
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.51 E-value=3.9e-14 Score=82.37 Aligned_cols=77 Identities=13% Similarity=0.020 Sum_probs=46.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-ceeeecceeeeEEEeecCCceeEEEEEecCCC--------ccccccchhhhh----c
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ--------MDFQDFDAELIF----A 67 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~--------~~~~~~~~~~~~----~ 67 (81)
+|.+|||||||++.+.+..... .......|......... .....+.+|||||. +.+..... .++ +
T Consensus 27 vG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~~~i~-~~~~~~~~ 104 (247)
T 3lxw_A 27 VGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRR-WDKCHVEVVDTPDIFSSQVSKTDPGCEERG-HCYLLSAP 104 (247)
T ss_dssp ESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEE-ETTEEEEEEECCSCSSTTHHHHSTTSHHHH-HHHHHHTT
T ss_pred ECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEE-ECCcEEEEEECCCCCCCCCCcHHHHHHHHH-HHHHhcCC
Confidence 6999999999998776553322 21221122222222222 34577999999996 33333212 333 8
Q ss_pred cCCEEEEEEEcc
Q psy9524 68 RCGALIFVIDTS 79 (81)
Q Consensus 68 ~~~~~i~v~D~~ 79 (81)
.+|++|+|+|++
T Consensus 105 ~~d~il~V~d~~ 116 (247)
T 3lxw_A 105 GPHALLLVTQLG 116 (247)
T ss_dssp CCSEEEEEEETT
T ss_pred CCCEEEEEEeCC
Confidence 999999999986
No 135
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.50 E-value=2.4e-14 Score=89.82 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.5
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 108 ~~~~~~~iiDTPG~~~f~~~~~-~~~~~aD~~llVvDa~~ 146 (483)
T 3p26_A 108 THRANFTIVDAPGHRDFVPNAI-MGISQADMAILCVDCST 146 (483)
T ss_dssp CSSCEEEEECCCCCGGGHHHHH-HHHTTCSEEEEEEECCC
T ss_pred cCCceEEEEECCCcHHHHHHHH-HhhhhCCEEEEEEECCC
Confidence 4567899999999999988744 89999999999999976
No 136
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.50 E-value=3.9e-14 Score=83.10 Aligned_cols=79 Identities=14% Similarity=0.132 Sum_probs=48.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh------h--hhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE------L--IFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~------~--~~~~~~~~ 72 (81)
+|.+|+|||||++.+.+............+......... .....+.+|||||++.+..+... . ..+.+|++
T Consensus 45 vG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~i 123 (270)
T 1h65_A 45 MGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS-RAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVL 123 (270)
T ss_dssp EESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE-ETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEE
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe-eCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEE
Confidence 599999999999877655431111111111111122222 45678999999999877654220 1 13479999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|++.
T Consensus 124 l~v~~~d~ 131 (270)
T 1h65_A 124 LYVDRLDA 131 (270)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99998753
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.49 E-value=9.7e-14 Score=85.41 Aligned_cols=79 Identities=15% Similarity=0.126 Sum_probs=52.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeE----------EEe------ec--CCceeEEEEEecCCCccccccch
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMT----------KED------IA--NSSFLQYQLWDCPGQMDFQDFDA 62 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~----------~~~------~~--~~~~~~l~~~D~~G~~~~~~~~~ 62 (81)
+|..++|||||++.|.+............+.+.. ... .. ......+.+|||||++.|.....
T Consensus 14 vG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~~~~~~~ 93 (403)
T 3sjy_A 14 VGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATML 93 (403)
T ss_dssp ECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGGGHHHHH
T ss_pred ECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHHHHHHHH
Confidence 5999999999998886643332111111111000 000 00 01226899999999999988734
Q ss_pred hhhhccCCEEEEEEEccC
Q psy9524 63 ELIFARCGALIFVIDTSM 80 (81)
Q Consensus 63 ~~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++|+|+|+++
T Consensus 94 -~~~~~~D~~ilVvda~~ 110 (403)
T 3sjy_A 94 -SGAALMDGAILVVAANE 110 (403)
T ss_dssp -HHHTTCSEEEEEEETTS
T ss_pred -HHHhhCCEEEEEEECCC
Confidence 89999999999999986
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=6.5e-15 Score=92.54 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=49.9
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCc-cccc--------cchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM-DFQD--------FDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~-~~~~--------~~~~~~~~~~ 69 (81)
+|.+|||||||++.+.+... ....+.+... .....+. .....+.+|||+|++ .+.. ..+ .+++.+
T Consensus 249 vG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d--~~~~~i~-~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~-~~~~~a 324 (482)
T 1xzp_A 249 VGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRD--VISEEIV-IRGILFRIVDTAGVRSETNDLVERLGIERTL-QEIEKA 324 (482)
T ss_dssp ECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSC--SCCEEEE-ETTEEEEEEESSCCCSSCCTTCCCCCHHHHH-HHHHHC
T ss_pred ECcCCCcHHHHHHHHHCCCCCccCCCCCeeee--eEEEEEe-cCCeEEEEEECCCccccchhhHHHHHHHHHH-HHhhcc
Confidence 59999999999987765522 1222211111 1111111 234678999999998 6543 123 788999
Q ss_pred CEEEEEEEccCC
Q psy9524 70 GALIFVIDTSMG 81 (81)
Q Consensus 70 ~~~i~v~D~~~~ 81 (81)
|++|+|+|++++
T Consensus 325 D~vl~VvD~s~~ 336 (482)
T 1xzp_A 325 DIVLFVLDASSP 336 (482)
T ss_dssp SEEEEEEETTSC
T ss_pred cEEEEEecCCCC
Confidence 999999999764
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.49 E-value=6.6e-15 Score=91.75 Aligned_cols=77 Identities=14% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCCCCCcHhHHHHHHhccCCC--CceeeecceeeeEEEeecCCceeEEEEEecCC----------Cccccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETLFLEGTNKMTKEDIANSSFLQYQLWDCPG----------QMDFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G----------~~~~~~~~~~~~~~~ 68 (81)
+|.++||||||++.+.+.... .....+........ +. .....+.+||||| +++|..++...+++.
T Consensus 201 vG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~--~~-~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 277 (456)
T 4dcu_A 201 IGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTS--FT-YNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 277 (456)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECC------CTTSEE--EE-ETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEE--EE-ECCceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh
Confidence 599999999999777644211 11111111110111 11 2234789999999 777777644358899
Q ss_pred CCEEEEEEEccC
Q psy9524 69 CGALIFVIDTSM 80 (81)
Q Consensus 69 ~~~~i~v~D~~~ 80 (81)
+|++|+|+|+++
T Consensus 278 ad~~llviD~~~ 289 (456)
T 4dcu_A 278 SEVVAVVLDGEE 289 (456)
T ss_dssp CSEEEEEEETTT
T ss_pred CCEEEEEEeCCC
Confidence 999999999976
No 140
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.49 E-value=2.6e-14 Score=85.16 Aligned_cols=78 Identities=14% Similarity=0.121 Sum_probs=49.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc---------cccccchhhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM---------DFQDFDAELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~~~~~~~ 71 (81)
+|++|||||||++.+.+............+......... ....++.+|||||+. .+..... .+++.+|+
T Consensus 14 vG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~-~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~-~~l~~~D~ 91 (301)
T 1ega_A 14 VGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT-EGAYQAIYVDTPGLHMEEKRAINRLMNKAAS-SSIGDVEL 91 (301)
T ss_dssp ECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE-ETTEEEEEESSSSCCHHHHHHHHHHHTCCTT-SCCCCEEE
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE-ECCeeEEEEECcCCCccchhhHHHHHHHHHH-HHHhcCCE
Confidence 699999999999887654221100001111111111222 345789999999987 2334423 78899999
Q ss_pred EEEEEEccC
Q psy9524 72 LIFVIDTSM 80 (81)
Q Consensus 72 ~i~v~D~~~ 80 (81)
+++|+|.++
T Consensus 92 vl~Vvd~~~ 100 (301)
T 1ega_A 92 VIFVVEGTR 100 (301)
T ss_dssp EEEEEETTC
T ss_pred EEEEEeCCC
Confidence 999999864
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.47 E-value=7e-14 Score=86.94 Aligned_cols=39 Identities=15% Similarity=0.206 Sum_probs=33.6
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~-~~~~~aD~~ilVVDa~~ 130 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMI-GGASQADLAVLVISARK 130 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHH-hhHhhCCEEEEEEECCC
Confidence 4456899999999999988734 88999999999999975
No 142
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.47 E-value=2.2e-13 Score=84.50 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=33.6
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.+|||||+++|..... .+++.+|++|+|+|+++
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~-~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMA-TGASTCDLAIILVDARY 139 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHH-HHHTTCSEEEEEEETTT
T ss_pred cCCceEEEEECCChHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 4557899999999999987634 78999999999999976
No 143
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.46 E-value=8.1e-15 Score=81.18 Aligned_cols=72 Identities=15% Similarity=0.132 Sum_probs=43.1
Q ss_pred CCCCCCcHhHHHHHHhccC-CCCceeeecceeeeEEEeecCCceeEEEEEecCC-----------Cccccccchhhhhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPG-----------QMDFQDFDAELIFAR 68 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G-----------~~~~~~~~~~~~~~~ 68 (81)
+|++|||||||++.+.+.. .....+.. +........ . .+.+||+|| ++.+..+ +..+++.
T Consensus 7 ~G~~~~GKSsli~~l~~~~~~~~~~~~~--t~~~~~~~~--~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~-~~~~~~~ 78 (190)
T 2cxx_A 7 AGRSNVGKSTLIYRLTGKKVRRGKRPGV--TRKIIEIEW--K---NHKIIDMPGFGFMMGLPKEVQERIKDE-IVHFIED 78 (190)
T ss_dssp EEBTTSSHHHHHHHHHSCCCSSSSSTTC--TTSCEEEEE--T---TEEEEECCCBSCCTTSCHHHHHHHHHH-HHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCcCCccCCCCCc--cceeEEEec--C---CEEEEECCCccccccCCHHHHHHHHHH-HHHHHHh
Confidence 5999999999997665543 22222211 111111111 1 689999999 6777776 4477776
Q ss_pred -CCEEEEEEEccC
Q psy9524 69 -CGALIFVIDTSM 80 (81)
Q Consensus 69 -~~~~i~v~D~~~ 80 (81)
++++++||++.|
T Consensus 79 ~~~~~~~v~~v~d 91 (190)
T 2cxx_A 79 NAKNIDVAVLVVD 91 (190)
T ss_dssp HGGGCCEEEEEEE
T ss_pred hhccCCEEEEEEc
Confidence 665555555443
No 144
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.45 E-value=1.4e-13 Score=84.65 Aligned_cols=78 Identities=19% Similarity=0.219 Sum_probs=52.4
Q ss_pred CCCCCCcHhHHHHHHhcc--------CCCC-------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQK--------MSPN-------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||++.|.+. +... .......|+......+. .....+.+|||||+++|..... .+
T Consensus 9 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~-~~~~~~~iiDtpG~~~f~~~~~-~~ 86 (397)
T 1d2e_A 9 IGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYS-TAARHYAHTDCPGHADYVKNMI-TG 86 (397)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEE-CSSCEEEEEECSSHHHHHHHHH-HT
T ss_pred EeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEec-cCCeEEEEEECCChHHHHHHHH-hh
Confidence 599999999999766442 1100 00111223222222233 4567899999999999877634 78
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++|+|+|+++
T Consensus 87 ~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 87 TAPLDGCILVVAAND 101 (397)
T ss_dssp SSCCSEEEEEEETTT
T ss_pred HhhCCEEEEEEECCC
Confidence 999999999999976
No 145
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.45 E-value=8.8e-14 Score=85.60 Aligned_cols=78 Identities=19% Similarity=0.214 Sum_probs=52.4
Q ss_pred CCCCCCcHhHHHHHHhcc---------CCCC-------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhh
Q psy9524 1 MGLRRSGKTSIQKVVFQK---------MSPN-------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAEL 64 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~---------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~ 64 (81)
+|..++|||||++.|.+. +... .......+.......+. .....+.+|||||+++|..... .
T Consensus 17 iG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~~~iiDtpG~~~f~~~~~-~ 94 (405)
T 2c78_A 17 IGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE-TAKRHYSHVDCPGHADYIKNMI-T 94 (405)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE-CSSCEEEEEECCCSGGGHHHHH-H
T ss_pred EcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec-cCCeEEEEEECCChHHHHHHHH-H
Confidence 599999999999766442 1110 00011122222222233 4567899999999999987634 8
Q ss_pred hhccCCEEEEEEEccC
Q psy9524 65 IFARCGALIFVIDTSM 80 (81)
Q Consensus 65 ~~~~~~~~i~v~D~~~ 80 (81)
+++.+|++|+|+|+++
T Consensus 95 ~~~~aD~~ilVvda~~ 110 (405)
T 2c78_A 95 GAAQMDGAILVVSAAD 110 (405)
T ss_dssp HHTTCSSEEEEEETTT
T ss_pred HHHHCCEEEEEEECCC
Confidence 8999999999999976
No 146
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.44 E-value=5.5e-14 Score=87.26 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=34.1
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.||||||+++|... ...+++.+|++|+|+|+++
T Consensus 81 ~~~~~~~iiDtpG~~~f~~~-~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 81 TKKYFFTIIDAPGHRDFVKN-MITGASQADAAILVVSAKK 119 (435)
T ss_dssp CSSCEEEECCCSSSTTHHHH-HHHTSSCCSEEEEEEECST
T ss_pred cCCeEEEEEECCCcHHHHHH-HHhhhhhcCEEEEEEECCC
Confidence 45678999999999999887 4489999999999999976
No 147
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.44 E-value=6.7e-15 Score=93.43 Aligned_cols=77 Identities=18% Similarity=0.147 Sum_probs=52.1
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.++|||||++.|.+. +...+...+....... .+......++.||||||++.|..+.. .+++.+|++|+|+|++
T Consensus 10 vG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~--~v~~~~g~~i~~iDTPGhe~f~~~~~-~~~~~aD~vILVVDa~ 86 (537)
T 3izy_P 10 MGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAF--LVSLPSGEKITFLDTPGHAAFSAMRA-RGTQVTDIVILVVAAD 86 (537)
T ss_dssp EESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSC--CBCSSCSSCCBCEECSSSCCTTTSBB-SSSBSBSSCEEECBSS
T ss_pred ECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEE--EEEeCCCCEEEEEECCChHHHHHHHH-HHHccCCEEEEEEECC
Confidence 589999999999766432 2222222222221111 12212345789999999999999844 8999999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 87 d 87 (537)
T 3izy_P 87 D 87 (537)
T ss_dssp S
T ss_pred C
Confidence 6
No 148
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.43 E-value=2.5e-13 Score=82.91 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC-c--eeeecceeeeEEEeecCCc---------------eeEEEEEecCCCcccc----
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN-E--TLFLEGTNKMTKEDIANSS---------------FLQYQLWDCPGQMDFQ---- 58 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~-~--~~~~~~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~---- 58 (81)
+|.+|||||||++.+.+..... . ..+..+..+. ..+. +. ...+++||+||+.++.
T Consensus 8 VG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~ 84 (363)
T 1jal_A 8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMP-DPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGE 84 (363)
T ss_dssp ECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECC-CHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHG
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecC-CcccceeeeeecccceeeeEEEEEECCCCcccccccc
Confidence 6999999999998886543211 1 1122333221 1111 21 2579999999998753
Q ss_pred ccc--hhhhhccCCEEEEEEEccC
Q psy9524 59 DFD--AELIFARCGALIFVIDTSM 80 (81)
Q Consensus 59 ~~~--~~~~~~~~~~~i~v~D~~~ 80 (81)
.+. ...+++++|++++|+|+++
T Consensus 85 gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 85 GLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp GGTCCHHHHHHTCSEEEEEEECSC
T ss_pred hHHHHHHHHHHhcCeEEEEEecCC
Confidence 221 1146899999999999986
No 149
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.43 E-value=7.5e-14 Score=89.75 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=33.7
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 242 ~~~~~~~iiDTPG~e~f~~~~~-~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 242 THRANFTIVDAPGHRDFVPNAI-MGISQADMAILCVDCST 280 (611)
T ss_dssp CSSCEEEEEECCSSSCHHHHHT-TTSSCCSEEEEEEECSH
T ss_pred cCCceEEEEECCCCcccHHHHH-HHHhhcCceEEEEECCC
Confidence 4567899999999999988744 88999999999999874
No 150
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.43 E-value=1.8e-13 Score=87.76 Aligned_cols=79 Identities=16% Similarity=0.154 Sum_probs=50.5
Q ss_pred CCCCCCcHhHHHHHHhccCC-CCceeeecceeeeEEEeec---------------CCceeEEEEEecCCCccccccchhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS-PNETLFLEGTNKMTKEDIA---------------NSSFLQYQLWDCPGQMDFQDFDAEL 64 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~D~~G~~~~~~~~~~~ 64 (81)
+|+.++|||||++.+.+... ..+......+.+....... +.....+.||||||++.|..+.. .
T Consensus 11 vGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~-r 89 (594)
T 1g7s_A 11 LGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRK-R 89 (594)
T ss_dssp ECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBC-S
T ss_pred ECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHH-H
Confidence 69999999999966644322 2111111122111111110 01123599999999999999844 8
Q ss_pred hhccCCEEEEEEEccC
Q psy9524 65 IFARCGALIFVIDTSM 80 (81)
Q Consensus 65 ~~~~~~~~i~v~D~~~ 80 (81)
+++.+|++|+|+|+++
T Consensus 90 ~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 90 GGALADLAILIVDINE 105 (594)
T ss_dssp SSBSCSEEEEEEETTT
T ss_pred HHhhCCEEEEEEECCC
Confidence 8999999999999987
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.42 E-value=4e-14 Score=89.76 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=34.5
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+.+.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~-~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 79 YKDYLINLLDTPGHADFTEDTY-RTLTAVDSALMVIDAAK 117 (528)
T ss_dssp ETTEEEEEECCCCSTTCCHHHH-HGGGGCSEEEEEEETTT
T ss_pred eCCEEEEEEECCCchhHHHHHH-HHHHhCCEEEEEEeCCC
Confidence 4568899999999999998844 89999999999999986
No 152
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.42 E-value=1.9e-13 Score=86.68 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=34.2
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+.+.||||||++.|..... .+++.+|++|+|+|+++
T Consensus 79 ~~~~~i~liDTPG~~df~~~~~-~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 79 YHDCLVNLLDTPGHEDFSEDTY-RTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp ETTEEEEEECCCCSTTCCHHHH-HGGGGCSEEEEEEETTT
T ss_pred ECCeEEEEEECCCChhHHHHHH-HHHHHCCEEEEEEeCCc
Confidence 4568899999999999988745 89999999999999876
No 153
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.41 E-value=1.7e-13 Score=83.76 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=47.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVID 77 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D 77 (81)
+|..++|||||++.|. .. ..|.......+. ....++.+|||||+++|..... ..++.+|++|+|+|
T Consensus 27 iG~~d~GKSTL~~~L~-----~~----giTi~~~~~~~~-~~~~~i~iiDtPGh~~f~~~~~-~~~~~aD~ailVvd 92 (370)
T 2elf_A 27 IGTEKSGRTSLAANLG-----KK----GTSSDITMYNND-KEGRNMVFVDAHSYPKTLKSLI-TALNISDIAVLCIP 92 (370)
T ss_dssp EESTTSSHHHHHHTTS-----EE----EEESSSEEEEEC-SSSSEEEEEECTTTTTCHHHHH-HHHHTCSEEEEEEC
T ss_pred ECCCCCCHHHHHHHHH-----hC----CEEEEeeEEEEe-cCCeEEEEEECCChHHHHHHHH-HHHHHCCEEEEEEc
Confidence 5899999999997664 11 122222222233 4456799999999999976534 78899999999999
No 154
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.41 E-value=3.4e-14 Score=88.93 Aligned_cols=78 Identities=15% Similarity=0.155 Sum_probs=40.4
Q ss_pred CCCCCCcHhHHHHHHhccCC--CCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccch-------hhhhccCCE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS--PNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDA-------ELIFARCGA 71 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~-------~~~~~~~~~ 71 (81)
+|++|||||||++.+.+... ......+... .....+. .....+.+|||+|.+.+..... ..+++.+|+
T Consensus 230 vG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d--~~~~~i~-~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 306 (462)
T 3geh_A 230 VGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRD--VVESQLV-VGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADL 306 (462)
T ss_dssp EECTTSSHHHHHHHHHHHHBSCCSCCTTCCHH--HHHHEEE-ETTEEEEECC--------------------CCCCSCSE
T ss_pred EcCCCCCHHHHHHHHhCCCcccccCCCCeeEE--EEEEEEE-ECCEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCE
Confidence 59999999999977755321 1111111111 1111111 2346789999999876543211 147889999
Q ss_pred EEEEEEccCC
Q psy9524 72 LIFVIDTSMG 81 (81)
Q Consensus 72 ~i~v~D~~~~ 81 (81)
+++|+|.+++
T Consensus 307 vl~VvD~s~~ 316 (462)
T 3geh_A 307 VLLTIDAATG 316 (462)
T ss_dssp EEEEEETTTC
T ss_pred EEEEeccCCC
Confidence 9999999863
No 155
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.41 E-value=3.2e-14 Score=88.87 Aligned_cols=39 Identities=21% Similarity=0.264 Sum_probs=33.7
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....++.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~-~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMI-TGTSQADCAILIIAGGV 120 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHH-HSSSCCSEEEEEEECSH
T ss_pred cCCceEEEEECCCcHHHHHHHH-hhhhhCCEEEEEEeCCc
Confidence 4557899999999999988734 88999999999999874
No 156
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.39 E-value=5.2e-13 Score=85.74 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=35.1
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+.++||||||++.|... ...+++.+|++|+|+|+++
T Consensus 67 ~g~~~~l~liDTPGh~dF~~e-v~~~l~~aD~aILVVDa~~ 106 (599)
T 3cb4_D 67 DGETYQLNFIDTPGHVDFSYE-VSRSLAACEGALLVVDAGQ 106 (599)
T ss_dssp TSCEEEEEEEECCCCGGGHHH-HHHHHHHCSEEEEEEETTT
T ss_pred CCCeEEEEEEECCCchHHHHH-HHHHHHHCCEEEEEEECCC
Confidence 355789999999999999887 4489999999999999976
No 157
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.39 E-value=2.8e-13 Score=84.79 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=24.4
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...++.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~-~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMI-NGASQADIGVLVISARR 156 (467)
T ss_dssp SSEEEEECCCCC------------TTSCSEEEEEEECST
T ss_pred CCeEEEEEECCCcHHHHHHHH-hhcccCCEEEEEEeCCc
Confidence 457899999999999988744 78899999999999976
No 158
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=82.07 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=41.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC---ceeeecceeeeEEEeecCCc---------------eeEEEEEecCCCccccc---
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN---ETLFLEGTNKMTKEDIANSS---------------FLQYQLWDCPGQMDFQD--- 59 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~---------------~~~l~~~D~~G~~~~~~--- 59 (81)
+|.+|||||||++.+.+..... +..+..+..+ ...+. +. ...+++||++|...+..
T Consensus 28 VG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g--~v~v~-~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~ 104 (396)
T 2ohf_A 28 VGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNES--RVPVP-DERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQ 104 (396)
T ss_dssp ECCSSSSHHHHHHHHHC-------------CCSEE--EEECC-CHHHHHHHHHHCCSEEECCEEEEEECCC---------
T ss_pred ECCCCCCHHHHHHHHHCCCccccCCCccccCceeE--EEEEC-CccceeeccccCcccccccccEEEECCCcccccchhh
Confidence 6999999999998886653211 1111222221 11111 11 24599999999887543
Q ss_pred -c--chhhhhccCCEEEEEEEccC
Q psy9524 60 -F--DAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 60 -~--~~~~~~~~~~~~i~v~D~~~ 80 (81)
+ .+..+++++|++++|+|+++
T Consensus 105 glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 105 GLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp --CCHHHHHHHTSSSEEEEEEC--
T ss_pred HHHHHHHHHHHhcCeEEEEEecCC
Confidence 1 13378899999999999875
No 159
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.39 E-value=4.7e-13 Score=81.66 Aligned_cols=75 Identities=25% Similarity=0.173 Sum_probs=44.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeee--EEEeecCCceeEEEEEecCCCc---------cccccchhhhhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKM--TKEDIANSSFLQYQLWDCPGQM---------DFQDFDAELIFARC 69 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~D~~G~~---------~~~~~~~~~~~~~~ 69 (81)
+|.+|||||||++.+.+...... .....|... ....+. + ..+.+|||+|.. .|+.. . ..++.+
T Consensus 185 vG~~naGKSTLln~L~~~~~~~~-~~~~~T~d~~~~~i~~~-g--~~v~l~DT~G~i~~lp~~lve~f~~t-l-~~~~~a 258 (364)
T 2qtf_A 185 VGYTNSGKTSLFNSLTGLTQKVD-TKLFTTMSPKRYAIPIN-N--RKIMLVDTVGFIRGIPPQIVDAFFVT-L-SEAKYS 258 (364)
T ss_dssp ECBTTSSHHHHHHHHHCC------------CCSCEEEEEET-T--EEEEEEECCCBCSSCCGGGHHHHHHH-H-HGGGGS
T ss_pred ECCCCCCHHHHHHHHHCCCcccc-CCcccccCCEEEEEEEC-C--EEEEEEeCCCchhcCCHHHHHHHHHH-H-HHHHhC
Confidence 59999999999988866543211 011111111 111222 3 568999999972 23333 3 467899
Q ss_pred CEEEEEEEccCC
Q psy9524 70 GALIFVIDTSMG 81 (81)
Q Consensus 70 ~~~i~v~D~~~~ 81 (81)
|++++|+|++++
T Consensus 259 D~il~VvD~s~~ 270 (364)
T 2qtf_A 259 DALILVIDSTFS 270 (364)
T ss_dssp SEEEEEEETTSC
T ss_pred CEEEEEEECCCC
Confidence 999999999864
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.39 E-value=7.9e-13 Score=84.92 Aligned_cols=40 Identities=28% Similarity=0.507 Sum_probs=34.8
Q ss_pred CCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 40 NSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 40 ~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+++.+.++||||||++.|... ...+++.+|++|+|+|+++
T Consensus 69 dg~~~~inliDTPGh~dF~~e-v~r~l~~aD~aILVVDa~~ 108 (600)
T 2ywe_A 69 DGNTYKLHLIDTPGHVDFSYE-VSRALAACEGALLLIDASQ 108 (600)
T ss_dssp TSCEEEEEEECCCCSGGGHHH-HHHHHHTCSEEEEEEETTT
T ss_pred CCCeEEEEEEECCCcHhHHHH-HHHHHHhCCEEEEEEECCC
Confidence 355689999999999999887 4488999999999999976
No 161
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.38 E-value=8.3e-14 Score=86.39 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=45.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccc------hhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFD------AELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~------~~~~~~~~~~~i~ 74 (81)
+|..++|||||++.+.++...........+.......+.......+.+|||+|++.+..+. ...+++.+|++|+
T Consensus 40 vG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vll 119 (423)
T 3qq5_A 40 AGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGIL 119 (423)
T ss_dssp ECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEE
T ss_pred ECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEE
Confidence 5999999999996664443211111111111111111111222378999999998876541 1258899999999
Q ss_pred EEEcc
Q psy9524 75 VIDTS 79 (81)
Q Consensus 75 v~D~~ 79 (81)
|+|++
T Consensus 120 VvD~~ 124 (423)
T 3qq5_A 120 VTDSA 124 (423)
T ss_dssp ECSSS
T ss_pred EEeCC
Confidence 99973
No 162
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.37 E-value=1e-12 Score=81.02 Aligned_cols=79 Identities=16% Similarity=0.082 Sum_probs=49.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceee--eccee--eeEEEeec--------------C--C----ceeEEEEEecCCCcc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLF--LEGTN--KMTKEDIA--------------N--S----SFLQYQLWDCPGQMD 56 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~--~~~~~--~~~~~~~~--------------~--~----~~~~l~~~D~~G~~~ 56 (81)
+|..++|||||++.|.+......... ...|. .+....+. + + ....+.+||+||++.
T Consensus 14 iG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~ 93 (408)
T 1s0u_A 14 VGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHET 93 (408)
T ss_dssp ESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHH
T ss_pred EcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHH
Confidence 58999999999988865432211111 11121 11111110 0 1 136899999999999
Q ss_pred ccccchhhhhccCCEEEEEEEccC
Q psy9524 57 FQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 57 ~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
|... ....+..+|++|+|+|+++
T Consensus 94 f~~~-~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 94 LMAT-MLSGASLMDGAILVIAANE 116 (408)
T ss_dssp HHHH-HHTTCSCCSEEEEEEETTS
T ss_pred HHHH-HHHhHhhCCEEEEEEECCC
Confidence 8765 3366778899999999985
No 163
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.37 E-value=5.5e-13 Score=82.82 Aligned_cols=77 Identities=13% Similarity=0.152 Sum_probs=43.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC--CceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc-----------chhhhhc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF-----------DAELIFA 67 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-----------~~~~~~~ 67 (81)
+|++|||||||++.+.+.... ...+.+..........+ ++ ..+.+|||+|+++.... ....+++
T Consensus 186 vG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~-~g--~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~ 262 (439)
T 1mky_A 186 VGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFI-DG--RKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE 262 (439)
T ss_dssp ECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEE-TT--EEEEESSCSCC-----------CCSCCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEE-CC--EEEEEEECCCCccccccchhhHHHHHHHHHHHHHh
Confidence 699999999999888665321 11111110000111111 13 36789999998543321 1125778
Q ss_pred cCCEEEEEEEccC
Q psy9524 68 RCGALIFVIDTSM 80 (81)
Q Consensus 68 ~~~~~i~v~D~~~ 80 (81)
.++++++|+|+++
T Consensus 263 ~ad~vllv~d~~~ 275 (439)
T 1mky_A 263 KADVVVIVLDATQ 275 (439)
T ss_dssp HCSEEEEEEETTT
T ss_pred hCCEEEEEEeCCC
Confidence 8999999999875
No 164
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.37 E-value=1.2e-13 Score=87.16 Aligned_cols=76 Identities=18% Similarity=0.203 Sum_probs=51.4
Q ss_pred CCCCCCcHhHHHHHHhc-cCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-KMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+|+.++|||||++.+.+ .+...+...+....... .+. .....+.||||||++.|..+.. .+++.+|++|+|+|++
T Consensus 10 vGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~--~v~-~~~~~i~~iDTPGhe~f~~~~~-~~~~~aD~aILVVda~ 85 (501)
T 1zo1_I 10 MGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAY--HVE-TENGMITFLDTPGHAAFTSMRA-RGAQATDIVVLVVAAD 85 (501)
T ss_dssp EESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCC--CCC-TTSSCCCEECCCTTTCCTTSBC-SSSBSCSSEEEEEETT
T ss_pred ECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEE--EEE-ECCEEEEEEECCCcHHHHHHHH-HHHhhCCEEEEEeecc
Confidence 58999999999966643 23222222122221111 111 2335689999999999999844 7899999999999987
Q ss_pred C
Q psy9524 80 M 80 (81)
Q Consensus 80 ~ 80 (81)
+
T Consensus 86 ~ 86 (501)
T 1zo1_I 86 D 86 (501)
T ss_dssp T
T ss_pred c
Confidence 6
No 165
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.36 E-value=1e-12 Score=80.95 Aligned_cols=80 Identities=16% Similarity=0.119 Sum_probs=42.1
Q ss_pred CCCCCCcHhHHHHHHhccCCC--C-ceeeecceeeeEEE-------------------eecCCceeEEEEEecCCCcc--
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--N-ETLFLEGTNKMTKE-------------------DIANSSFLQYQLWDCPGQMD-- 56 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~-~~~~~~~~~~~~~~-------------------~~~~~~~~~l~~~D~~G~~~-- 56 (81)
+|.+|||||||++.+.+.... . +..+..+..+.... .+...+.+++++||+||+..
T Consensus 6 vG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a 85 (397)
T 1wxq_A 6 VGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGA 85 (397)
T ss_dssp EECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC------
T ss_pred ECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccch
Confidence 599999999999888665321 1 11122233332111 01111247899999999864
Q ss_pred --ccccch--hhhhccCCEEEEEEEccC
Q psy9524 57 --FQDFDA--ELIFARCGALIFVIDTSM 80 (81)
Q Consensus 57 --~~~~~~--~~~~~~~~~~i~v~D~~~ 80 (81)
.+.+.. -.+++.+|++++|+|+++
T Consensus 86 ~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 86 HEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ---------CCCSSTTCSEEEEEEETTC
T ss_pred hhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 222211 145789999999999976
No 166
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.36 E-value=2.2e-12 Score=78.33 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=47.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc--------chhhhhccCCEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF--------DAELIFARCGAL 72 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~--------~~~~~~~~~~~~ 72 (81)
+|.+|||||||++.+.+..... ......+......... .....+.+|||+|....... ....+...+|++
T Consensus 173 vG~~gvGKSTLin~L~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~i 250 (357)
T 2e87_A 173 AGHPNVGKSTLLKALTTAKPEI-ASYPFTTRGINVGQFE-DGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLI 250 (357)
T ss_dssp ECSTTSSHHHHHHHHCSSCCEE-ECCTTCSSCEEEEEEE-ETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcc-CCCCCeeeceeEEEEE-ecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEE
Confidence 5999999999998886654211 0011122222222222 33567999999998654211 011344568999
Q ss_pred EEEEEccC
Q psy9524 73 IFVIDTSM 80 (81)
Q Consensus 73 i~v~D~~~ 80 (81)
++|+|+++
T Consensus 251 llV~D~s~ 258 (357)
T 2e87_A 251 IYIFDPSE 258 (357)
T ss_dssp EEEECTTC
T ss_pred EEEEeCCc
Confidence 99999875
No 167
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.35 E-value=1.7e-12 Score=85.89 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=35.0
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+..+.++||||||+.+|... ...+++.+|++|+|+|+++
T Consensus 95 ~~~~~i~liDTPG~~df~~~-~~~~l~~aD~ailVvDa~~ 133 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSE-VTAALRVTDGALVVVDTIE 133 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHH-HHHHHHTCSEEEEEEETTT
T ss_pred CCCceEEEEECcCchhhHHH-HHHHHHhCCEEEEEEeCCC
Confidence 45789999999999999988 4589999999999999976
No 168
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.35 E-value=6.9e-13 Score=86.28 Aligned_cols=78 Identities=18% Similarity=0.109 Sum_probs=49.7
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCC------c--------eeeecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPN------E--------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.+.. .+... . ......+......... ...+.+.||||||+..|... ..
T Consensus 18 vG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~-~~~~~i~liDTPG~~df~~~-~~ 95 (691)
T 1dar_A 18 AAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCF-WKDHRINIIDTPGHVDFTIE-VE 95 (691)
T ss_dssp EECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEE-ETTEEEEEECCCSSTTCHHH-HH
T ss_pred ECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEE-ECCeEEEEEECcCccchHHH-HH
Confidence 58999999999966642 11100 0 0011222222222222 34688999999999999887 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++|+|+|+++
T Consensus 96 ~~l~~aD~~ilVvDa~~ 112 (691)
T 1dar_A 96 RSMRVLDGAIVVFDSSQ 112 (691)
T ss_dssp HHHHHCSEEEEEEETTT
T ss_pred HHHHHCCEEEEEEECCC
Confidence 89999999999999876
No 169
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.35 E-value=4.8e-13 Score=84.05 Aligned_cols=78 Identities=19% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCCCCcHhHHHHHHhccC----CCC--ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKM----SPN--ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIF 74 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~ 74 (81)
+|..++|||||++.|.+.. ... .......|.......+. .....+.+||+||+++|..... .+++.+|++|+
T Consensus 25 iG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~-~~~~~i~iiDtPGh~~~~~~~~-~~~~~aD~~il 102 (482)
T 1wb1_A 25 FGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFK-LENYRITLVDAPGHADLIRAVV-SAADIIDLALI 102 (482)
T ss_dssp EECTTSSHHHHHHHHHTTC--------------------CCCEEE-ETTEEEEECCCSSHHHHHHHHH-HHTTSCCEEEE
T ss_pred ECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEE-ECCEEEEEEECCChHHHHHHHH-HHHhhCCEEEE
Confidence 5899999999998775543 110 00111112111111111 1347899999999999877634 88999999999
Q ss_pred EEEccC
Q psy9524 75 VIDTSM 80 (81)
Q Consensus 75 v~D~~~ 80 (81)
|+|+++
T Consensus 103 Vvda~~ 108 (482)
T 1wb1_A 103 VVDAKE 108 (482)
T ss_dssp EEETTT
T ss_pred EEecCC
Confidence 999876
No 170
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.35 E-value=1.1e-12 Score=80.90 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=30.4
Q ss_pred eEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.+||+||++.|..... ..+..+|++|+|+|+++
T Consensus 83 ~~i~iiDtPGh~~f~~~~~-~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTML-AGASLMDGAILVIAANE 118 (410)
T ss_dssp EEEEEEECSSHHHHHHHHH-HCGGGCSEEEEEEETTS
T ss_pred cEEEEEECCChHHHHHHHH-hhhhhCCEEEEEEECCC
Confidence 6899999999999876523 66778899999999985
No 171
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.32 E-value=3.3e-12 Score=83.30 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=33.4
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+.+.++||||||+.+|... ...+++.+|++|+|+|+++
T Consensus 80 ~~~~i~liDTPG~~df~~~-~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIE-VERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CceeEEEEeCCCccchHHH-HHHHHHHCCEEEEEEeCCC
Confidence 4488999999999999887 4489999999999999875
No 172
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.32 E-value=4.9e-12 Score=74.34 Aligned_cols=54 Identities=15% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCCCCCcHhHHHHHHhccCCC-C-c-------eeeecceeeeEEEeecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP-N-E-------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~-~-~-------~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 55 (81)
+|.+|+|||||++.|.+.-.. . . ..+...+. .......++..+++.+|||||..
T Consensus 14 vG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~l~liDTpG~~ 76 (274)
T 3t5d_A 14 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ-SKVLIKEGGVQLLLTIVDTPGFG 76 (274)
T ss_dssp EECTTSSHHHHHHHHSSSCC---------------CCCEE-EEEEECC--CCEEEEEEECCCCS
T ss_pred ECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEE-EEEEEecCCeEEEEEEEECCCcc
Confidence 599999999999876443221 1 1 11111111 11222223555799999999974
No 173
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.31 E-value=8.2e-13 Score=80.08 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=47.4
Q ss_pred CCCCCCcHhHHHHHHhccCCC--C-ceeeecceeeeEEEeecCCceeEEEEEecCCCc----cccccchhhhhcc---CC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--N-ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM----DFQDFDAELIFAR---CG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~----~~~~~~~~~~~~~---~~ 70 (81)
+|.++||||||++.+.+.... . ...+..++.+ ...+ .....+.+||+||+. .+..+ ...|++. ++
T Consensus 164 vG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~--~~~~~~~l~DtPG~i~~a~~~~~l-~~~fl~~i~~~d 238 (342)
T 1lnz_A 164 VGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVET--DDGRSFVMADLPGLIEGAHQGVGL-GHQFLRHIERTR 238 (342)
T ss_dssp ESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEEC--SSSCEEEEEEHHHHHHHTTCTTTT-HHHHHHHHHHCC
T ss_pred eCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEe--CCCceEEEecCCCCcccccccchh-HHHHHHHHHhcc
Confidence 599999999999888654321 1 1112222221 2222 223678999999964 34445 3356554 99
Q ss_pred EEEEEEEccC
Q psy9524 71 ALIFVIDTSM 80 (81)
Q Consensus 71 ~~i~v~D~~~ 80 (81)
++|+|+|+++
T Consensus 239 ~ll~VvD~s~ 248 (342)
T 1lnz_A 239 VIVHVIDMSG 248 (342)
T ss_dssp EEEEEEESSC
T ss_pred EEEEEEECCc
Confidence 9999999976
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.30 E-value=3.9e-12 Score=82.47 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=52.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCcee-----------------eecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETL-----------------FLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|+.|+|||||++.+.......... ....++......+. ...+.+++|||+|+++|... ..
T Consensus 15 iG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~-~~~~~~nliDTpG~~~f~~~-~~ 92 (665)
T 2dy1_A 15 VGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLL-FRGHRVFLLDAPGYGDFVGE-IR 92 (665)
T ss_dssp EESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEE-ETTEEEEEEECCCSGGGHHH-HH
T ss_pred ECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEe-eCCEEEEEEeCCCccchHHH-HH
Confidence 5899999999997775332210000 00112222222222 45688999999999999887 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++++|+|.++
T Consensus 93 ~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 93 GALEAADAALVAVSAEA 109 (665)
T ss_dssp HHHHHCSEEEEEEETTT
T ss_pred HHHhhcCcEEEEEcCCc
Confidence 89999999999999865
No 175
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.30 E-value=6.2e-12 Score=74.74 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=27.5
Q ss_pred eeEEEEEecCCCcc-------------ccccchhhhhccCCEEEEEEEcc
Q psy9524 43 FLQYQLWDCPGQMD-------------FQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 43 ~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
..++.+|||||... +... ...+++.+|++++|+|.+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRM-VMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHH-HHHHHHSTTEEEEEEEES
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHH-HHHHHcCCCeEEEEEEec
Confidence 46799999999754 3334 337889999999999974
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.29 E-value=2e-12 Score=84.16 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=49.9
Q ss_pred CCCCCCcHhHHHHHHhc---cCCCCc-------ee-------eecceeeeEEEeecCCceeEEEEEecCCCccccccchh
Q psy9524 1 MGLRRSGKTSIQKVVFQ---KMSPNE-------TL-------FLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAE 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~---~~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 63 (81)
+|..++|||||++.|.. .+.... .. ....+......... .....+.||||||+..|... ..
T Consensus 16 vG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~-~~~~~i~liDTPG~~df~~~-~~ 93 (693)
T 2xex_A 16 MAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAA-WEGHRVNIIDTPGHVDFTVE-VE 93 (693)
T ss_dssp ECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEE-ETTEEEEEECCCCCSSCCHH-HH
T ss_pred ECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEE-ECCeeEEEEECcCCcchHHH-HH
Confidence 58999999999966642 221100 00 01112111111222 34578999999999999887 44
Q ss_pred hhhccCCEEEEEEEccC
Q psy9524 64 LIFARCGALIFVIDTSM 80 (81)
Q Consensus 64 ~~~~~~~~~i~v~D~~~ 80 (81)
.+++.+|++|+|+|+++
T Consensus 94 ~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 94 RSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp HHHHHCSEEEEEEETTT
T ss_pred HHHHHCCEEEEEECCCC
Confidence 89999999999999875
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.9e-12 Score=78.05 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCCCcHhHHHHHHhccCCC--Ccee----eecceeeeEEEe--e-cCCceeEEEEEecCCC-------ccccccchh-
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETL----FLEGTNKMTKED--I-ANSSFLQYQLWDCPGQ-------MDFQDFDAE- 63 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~----~~~~~~~~~~~~--~-~~~~~~~l~~~D~~G~-------~~~~~~~~~- 63 (81)
+|++|+|||||++.|.+.... .... ...++....... . .++..+.+.+|||+|+ +.+..+ ..
T Consensus 43 vG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i-~~~ 121 (361)
T 2qag_A 43 VGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI-ISY 121 (361)
T ss_dssp CCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------CCT-HHH
T ss_pred EcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHH-HHH
Confidence 699999999999886443211 1110 011222222111 1 1244568999999999 777777 43
Q ss_pred ------hhhccCCE
Q psy9524 64 ------LIFARCGA 71 (81)
Q Consensus 64 ------~~~~~~~~ 71 (81)
.|++.+++
T Consensus 122 i~~~~~~yl~~~~~ 135 (361)
T 2qag_A 122 IDEQFERYLHDESG 135 (361)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhhh
Confidence 56665443
No 178
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.29 E-value=3.8e-12 Score=77.83 Aligned_cols=78 Identities=12% Similarity=0.123 Sum_probs=49.5
Q ss_pred CCCCCCcHhHHHHHHhccCCC--C-ceeeecceeeeEEEeecC------------------CceeEEEEEecCCCcccc-
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--N-ETLFLEGTNKMTKEDIAN------------------SSFLQYQLWDCPGQMDFQ- 58 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~D~~G~~~~~- 58 (81)
+|.+|||||||++.+.+.... + +..+..++.+.. .+.+ .....+++||+||+..+.
T Consensus 7 VG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~--~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~ 84 (368)
T 2dby_A 7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV--PLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAH 84 (368)
T ss_dssp ECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE--ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCC
T ss_pred ECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE--ecChHHHHHHHHHhcccccccccCCceEEEEECCCcccccc
Confidence 699999999999877554211 1 111233433322 1110 124579999999988653
Q ss_pred ---ccch--hhhhccCCEEEEEEEccC
Q psy9524 59 ---DFDA--ELIFARCGALIFVIDTSM 80 (81)
Q Consensus 59 ---~~~~--~~~~~~~~~~i~v~D~~~ 80 (81)
.+.. ..+++.+|++++|+|+++
T Consensus 85 ~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 85 KGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp SSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 2211 146799999999999985
No 179
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.28 E-value=1.6e-13 Score=87.97 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
....+.||||||+++|..... .+++.+|++|+|+|+++
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~-~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMI-AGASSADFAVLVVDSSQ 290 (592)
T ss_dssp ------CCEEESSSEEEEECC-C-------CCSEEEEEE
T ss_pred CCeEEEEEECCChHHHHHHHH-HHHhhCCEEEEEEECCC
Confidence 446789999999999988745 78999999999999874
No 180
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.28 E-value=3.7e-12 Score=77.20 Aligned_cols=51 Identities=20% Similarity=0.231 Sum_probs=44.0
Q ss_pred ecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 27 LEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
..+|.++....+. .+.+++++||++||++++.+ |..||++++++|+|||++
T Consensus 145 ~~~TiGi~~~~~~-~~~v~l~iwDtaGQe~~R~~-w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 145 RTKTTGIHEYDFV-VKDIPFHLIDVGGQRSERKX-WVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp CCCCCSCEEEEEE-SSSCEEEEEECCSCHHHHHH-HHTTSCSCSEEEEEEEGG
T ss_pred ccceeeeEEEEEE-eeeeeeccccCCCccccccc-HHHHhccCCEEEEEEECC
Confidence 4566676666665 56799999999999999999 779999999999999998
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.27 E-value=2.3e-12 Score=87.51 Aligned_cols=78 Identities=19% Similarity=0.231 Sum_probs=50.1
Q ss_pred CCCCCCcHhHHHHHHhccC--------CCC-------ceeeecceeeeEEEeecCCceeEEEEEecCCCccccccchhhh
Q psy9524 1 MGLRRSGKTSIQKVVFQKM--------SPN-------ETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELI 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~ 65 (81)
+|..++|||||++.|.+.. ... .......|+......+. .....+.||||||+++|..... .+
T Consensus 302 IGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~-~~~~kI~IIDTPGHedF~~~mi-~g 379 (1289)
T 3avx_A 302 IGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYD-TPTRHYAHVDCPGHADYVKNMI-TG 379 (1289)
T ss_dssp EESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEE-CSSCEEEEEECCCHHHHHHHHH-HT
T ss_pred EcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEc-CCCEEEEEEECCChHHHHHHHH-HH
Confidence 5899999999997664421 000 00111112111111222 4567899999999999987634 78
Q ss_pred hccCCEEEEEEEccC
Q psy9524 66 FARCGALIFVIDTSM 80 (81)
Q Consensus 66 ~~~~~~~i~v~D~~~ 80 (81)
++.+|++|+|+|+++
T Consensus 380 as~AD~aILVVDAtd 394 (1289)
T 3avx_A 380 AAQMDGAILVVAATD 394 (1289)
T ss_dssp SCCCSEEEEEEETTT
T ss_pred HhhCCEEEEEEcCCc
Confidence 999999999999986
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.27 E-value=1.4e-11 Score=74.76 Aligned_cols=37 Identities=16% Similarity=0.305 Sum_probs=29.3
Q ss_pred eeEEEEEecCCCccc-------------cccchhhhhccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDF-------------QDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~-------------~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+.+||+||...+ ..+.. .|+++++++|+|+|.++
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~-~~i~~~d~iilvv~~~~ 184 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVR-SYIEKPNCIILAISPAN 184 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHH-HHHHSSSEEEEEEEETT
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHH-HHhhcCCeEEEEeeccc
Confidence 456899999998876 44534 88999999999998643
No 183
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.25 E-value=3.4e-12 Score=71.82 Aligned_cols=75 Identities=19% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc-eeeecceeeeEEEeecCCceeEEEEEecCCCcc----------ccccchhhhh---
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE-TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----------FQDFDAELIF--- 66 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----------~~~~~~~~~~--- 66 (81)
+|++|||||||++.+.+...... .+....+......... + .+.+||++|+.. ++.. ...++
T Consensus 32 vG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~-~---~~~l~Dt~G~~~~~~~~~~~~~~~~~-~~~~~~~~ 106 (210)
T 1pui_A 32 AGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVA-D---GKRLVDLPGYGYAEVPEEMKRKWQRA-LGEYLEKR 106 (210)
T ss_dssp EECTTSSHHHHHTTTCCC-------------CCEEEEEEE-T---TEEEEECCCCC------CCHHHHHHH-HHHHHHHC
T ss_pred ECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEec-C---CEEEEECcCCcccccCHHHHHHHHHH-HHHHHHhh
Confidence 59999999999987765431111 1111111111111111 2 578999999843 2222 11344
Q ss_pred ccCCEEEEEEEccC
Q psy9524 67 ARCGALIFVIDTSM 80 (81)
Q Consensus 67 ~~~~~~i~v~D~~~ 80 (81)
+.++++++++|+++
T Consensus 107 ~~~~~~~~v~d~~~ 120 (210)
T 1pui_A 107 QSLQGLVVLMDIRH 120 (210)
T ss_dssp TTEEEEEEEEETTS
T ss_pred hcccEEEEEEECCC
Confidence 46899999999875
No 184
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=6e-12 Score=80.21 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=27.9
Q ss_pred EEEEEecCCCcc-----------ccccchhhhhccCCEEEEEEEccC
Q psy9524 45 QYQLWDCPGQMD-----------FQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 45 ~l~~~D~~G~~~-----------~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
++.||||||... |... ...+++.+|++|+|+|+++
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~-~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAV-LRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHH-HHHHHHHCSEEEEEEETTS
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHH-HHHHHHhCCEEEEEEeCCc
Confidence 689999999875 3344 3368899999999999865
No 185
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.24 E-value=1.4e-11 Score=74.97 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=42.2
Q ss_pred cceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 28 EGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+|.++....+. .+.+.+++||++||+.++.+ |..||++++++|+|||+++
T Consensus 178 ~~T~Gi~~~~~~-~~~~~l~iwDt~GQe~~r~~-w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 178 VKTTGIVETHFT-FKDLHFKMFDVGGQRSERKK-WIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp CCCCSEEEEEEE-ETTEEEEEEEECCSGGGGGG-GGGGCTTCSEEEEEEEGGG
T ss_pred CceeceEEEEEe-eCCeeEEEEeCCCchhhhHH-HHHHHhcCCEEEEEEECcc
Confidence 355565554444 35789999999999999999 7799999999999999986
No 186
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.23 E-value=7.4e-12 Score=75.55 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=43.1
Q ss_pred ecceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 27 LEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
..+|.++....+. .+.+++++||++||++++.+ |..||++++++|+|||++
T Consensus 151 r~~TiGi~~~~~~-~~~v~l~iwDtgGQe~~R~~-w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 151 RVPTTGIIEYPFD-LQSVIFRMVDVGGQRSERRK-WIHCFENVTSIMFLVALS 201 (327)
T ss_dssp CCCCCSEEEEEEE-ETTEEEEEEEECCSHHHHTT-GGGGCSSCSEEEEEEEGG
T ss_pred cCceeeEEEEEEE-eeceeeEEEEcCCchhHHHH-HHHHhCCCCEEEEEEECc
Confidence 3566666666555 56799999999999999999 779999999999999887
No 187
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.22 E-value=3e-11 Score=71.26 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=27.1
Q ss_pred eeEEEEEecCCCcc-------------ccccchhhhhccCCEEE-EEEEccC
Q psy9524 43 FLQYQLWDCPGQMD-------------FQDFDAELIFARCGALI-FVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~-------------~~~~~~~~~~~~~~~~i-~v~D~~~ 80 (81)
...+.+|||||... +..+ ...|++.++.++ +|+|+++
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~il~v~d~~~ 174 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDM-LMQFVTKENCLILAVSPANS 174 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHH-HHHHHTSTTEEEEEEEESSS
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHH-HHHHHcCCCeEEEEEecCCc
Confidence 36799999999642 3344 337888888777 6899875
No 188
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.18 E-value=4.1e-11 Score=74.01 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=39.4
Q ss_pred eeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 30 TNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 30 ~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
|.++....+. ...+++++||++||++++.+ |..||++++++|+|||+++
T Consensus 204 TiGi~~~~~~-~~~v~l~iwDtaGQe~~r~~-w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 204 TSGIFETKFQ-VDKVNFHMFDVGGQRDERRK-WIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp CCSEEEEEEE-ETTEEEEEEEECCSGGGGGG-GGGGTTTCCEEEEEEETTG
T ss_pred eeeeEEEEee-cCCccceecccchhhhhhhh-hHhhccCCCEEEEEEECcc
Confidence 3444433333 24589999999999999999 7799999999999999986
No 189
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.16 E-value=2.5e-11 Score=74.47 Aligned_cols=78 Identities=18% Similarity=0.183 Sum_probs=49.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccccc----c---chhhhhccCCEEE
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----F---DAELIFARCGALI 73 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~---~~~~~~~~~~~~i 73 (81)
+|.+|||||||++.|.+..... ......|.......+. ....++++.|+||-..-.. + .. ...+.||+++
T Consensus 78 vG~PNvGKSTL~n~Lt~~~~~v-~~~pftT~~~~~g~~~-~~~~~i~l~D~pGl~~~a~~~~~~g~~~l-~~i~~ad~il 154 (376)
T 4a9a_A 78 VGFPSVGKSTLLSKLTGTESEA-AEYEFTTLVTVPGVIR-YKGAKIQMLDLPGIIDGAKDGRGRGKQVI-AVARTCNLLF 154 (376)
T ss_dssp ECCCCHHHHHHHHHHHSBCCCG-GGTCSSCCCEEEEEEE-ETTEEEEEEECGGGCCC-----CHHHHHH-HHHHHCSEEE
T ss_pred ECCCCCCHHHHHHHHhCCCCcc-cCCCCceeeeeeEEEE-eCCcEEEEEeCCCccCCchhhhHHHHHHH-HHHHhcCccc
Confidence 5999999999999987653322 1112223223333333 4557789999999542211 1 12 4567899999
Q ss_pred EEEEccCC
Q psy9524 74 FVIDTSMG 81 (81)
Q Consensus 74 ~v~D~~~~ 81 (81)
+|+|.++|
T Consensus 155 ~vvD~~~p 162 (376)
T 4a9a_A 155 IILDVNKP 162 (376)
T ss_dssp EEEETTSH
T ss_pred cccccCcc
Confidence 99999874
No 190
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.07 E-value=1.2e-10 Score=70.92 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=32.6
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
+.+++++||++||++++.+ |..||++++++|+|||++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~-~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRK-WIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp ---EEEEEEECCSTTGGGG-TGGGCTTEEEEEEEEEGG
T ss_pred cceeeEEEECCCchhhhHH-HHHHhCCCCEEEEEEECc
Confidence 6789999999999999999 669999999999999997
No 191
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.07 E-value=1.5e-10 Score=70.69 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=34.0
Q ss_pred ceeeeEEEeecCCceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 29 GTNKMTKEDIANSSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 29 ~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+|.++....+. .+.+.+++||++||+.++.. |..||++++++|+|||+++
T Consensus 187 ~T~Gi~~~~~~-~~~~~l~i~Dt~Gq~~~r~~-w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 187 PTKGIHEYDFE-IKNVPFKMVDVGGQRSERKR-WFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp CCSSEEEEEEE-ETTEEEEEEEECC--------CTTSCTTCCEEEEEEETTC
T ss_pred CccceEEEEee-eCCeEEEEEeccchhhhhhh-HHHHhCCCCEEEEEEECcc
Confidence 44555444444 34689999999999999999 6699999999999999987
No 192
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.07 E-value=3.4e-10 Score=73.85 Aligned_cols=36 Identities=25% Similarity=0.436 Sum_probs=28.1
Q ss_pred eEEEEEecCCCccc---cccchhhhhccCCEEEEEEEccC
Q psy9524 44 LQYQLWDCPGQMDF---QDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 44 ~~l~~~D~~G~~~~---~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.||||||.... ... ...+++.+|++|+|+|+++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~-~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNEL-SLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHH-HTHHHHSSSEEEEEEETTS
T ss_pred CCeEEEECCCCCchhhHHHH-HHHHHHhCCEEEEEEeCCC
Confidence 35899999996653 233 2378999999999999875
No 193
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.00 E-value=5.1e-10 Score=68.99 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=47.4
Q ss_pred CCCCCCcHhHHHHHHhccCC----CCceeeecceeeeEEEeecC------------Cc--eeEEEEEecCCCcc------
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS----PNETLFLEGTNKMTKEDIAN------------SS--FLQYQLWDCPGQMD------ 56 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~----~~~~~~~~~~~~~~~~~~~~------------~~--~~~l~~~D~~G~~~------ 56 (81)
+|++|||||||++.|.+... ..+..+..++.+... +.+ .+ ...+.+||++|...
T Consensus 26 VG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~--v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e 103 (392)
T 1ni3_A 26 VGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVA--VPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGV 103 (392)
T ss_dssp EECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEE--ECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSS
T ss_pred ECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeee--eCCcchhhhhhhcccccccCcceEEEeccccccCCcHHH
Confidence 69999999999998877432 112223334333211 110 01 13589999999543
Q ss_pred -ccccchhhhhccCCEEEEEEEccC
Q psy9524 57 -FQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 57 -~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+... ....++.+|+++.|+|+.+
T Consensus 104 ~L~~~-fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 104 GLGNA-FLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp SSCHH-HHHHHTTCSEEEEEEECCC
T ss_pred HHHHH-HHHHHHHHHHHHHHHhccc
Confidence 2222 2266789999999999864
No 194
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.96 E-value=2.7e-10 Score=67.92 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=27.7
Q ss_pred CCCCCCcHhHHHHHHhcc-CCCCceee-----ecceee---eEEEeecCCceeEEEEEecCCC-------cccccc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-MSPNETLF-----LEGTNK---MTKEDIANSSFLQYQLWDCPGQ-------MDFQDF 60 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-~~~~~~~~-----~~~~~~---~~~~~~~~~~~~~l~~~D~~G~-------~~~~~~ 60 (81)
+|++|||||||++.+.+. ..+..... ..++.. ........+....+.+||++|+ +.++.+
T Consensus 24 vG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l 99 (301)
T 2qnr_A 24 VGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTI 99 (301)
T ss_dssp EEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CTTH
T ss_pred ECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHHHH
Confidence 699999999999887654 33321100 001111 1111111244578999999998 555554
No 195
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.91 E-value=3.3e-09 Score=65.86 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=44.6
Q ss_pred CCCCCCcHhHHHHHHhccCCC---CceeeecceeeeEEEeecCCceeEEEEEecCCCcc----ccccchhhh---hccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP---NETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD----FQDFDAELI---FARCG 70 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~----~~~~~~~~~---~~~~~ 70 (81)
+|++|||||||++.+.+..+. ....+..+.. ..+.......+.+||++|... +..+.. .+ ...++
T Consensus 163 VG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~----G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~-~fl~~~era~ 237 (416)
T 1udx_A 163 VGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNL----GVVEVSEEERFTLADIPGIIEGASEGKGLGL-EFLRHIARTR 237 (416)
T ss_dssp ECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEE----EEEECSSSCEEEEEECCCCCCCGGGSCCSCH-HHHHHHTSSS
T ss_pred ECCCCCcHHHHHHHHHcCCccccCcccceeccee----eEEEecCcceEEEEeccccccchhhhhhhhH-HHHHHHHHHH
Confidence 699999999999988655321 0111112221 112212236789999999743 223322 33 34699
Q ss_pred EEEEEEEcc
Q psy9524 71 ALIFVIDTS 79 (81)
Q Consensus 71 ~~i~v~D~~ 79 (81)
.++.++|++
T Consensus 238 ~lL~vvDls 246 (416)
T 1udx_A 238 VLLYVLDAA 246 (416)
T ss_dssp EEEEEEETT
T ss_pred hhhEEeCCc
Confidence 999999985
No 196
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.88 E-value=3.5e-09 Score=65.78 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=27.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCCce-----eeecceeeeEEEe---ecCCceeEEEEEecCCCccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNET-----LFLEGTNKMTKED---IANSSFLQYQLWDCPGQMDF 57 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~-----~~~~~~~~~~~~~---~~~~~~~~l~~~D~~G~~~~ 57 (81)
+|++|||||||++.+.+...+... .....+....... ...+....+.+||++|...+
T Consensus 37 vG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 37 VGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp ECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred ECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 699999999999988766442111 0001111111111 11233457999999998754
No 197
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.86 E-value=2.9e-09 Score=64.57 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.++||||||++.+.+.
T Consensus 37 vG~~~~GKSSLln~L~g~ 54 (353)
T 2x2e_A 37 VGGQSAGKSSVLENFVGR 54 (353)
T ss_dssp ECBTTSSHHHHHHTTTTS
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 699999999999877654
No 198
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.77 E-value=9.2e-09 Score=65.71 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=34.4
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..+++|.||||+..|..-.. ..++-+|++|+|+|+.+
T Consensus 97 ~~~~~iNlIDTPGHvDF~~Ev~-raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 97 YRDRVVNLLDTPGHQDFSEDTY-RVLTAVDSALVVIDAAK 135 (548)
T ss_dssp ETTEEEEEECCCCGGGCSHHHH-HHHHSCSEEEEEEETTT
T ss_pred ECCEEEEEEeCCCcHHHHHHHH-HHHHhcCceEEEeecCC
Confidence 5668899999999999988745 89999999999999864
No 199
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.63 E-value=1e-08 Score=60.15 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=28.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDF 57 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~ 57 (81)
+|.+|||||||++.+.+............|....... ....+.+|||||....
T Consensus 105 vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~----~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 105 VGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFS----LENGVKILDTPGILYK 157 (262)
T ss_dssp EESTTSSHHHHHHHHHTTCC----------CCSCEEE----CTTSCEEESSCEECCC
T ss_pred eCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEE----eCCCEEEEECCCcccC
Confidence 5899999999998887654432211112221111111 1235799999997643
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.61 E-value=6.4e-08 Score=54.70 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
...+.+||++|+- ..+..+....+.+++|+|+++
T Consensus 108 ~~d~iiidt~G~~----~~~~~~~~~~~~~i~vvd~~~ 141 (221)
T 2wsm_A 108 DCDLLLIENVGNL----ICPVDFDLGENYRVVMVSVTE 141 (221)
T ss_dssp TCSEEEEEEEEBS----SGGGGCCCSCSEEEEEEEGGG
T ss_pred CCCEEEEeCCCCC----CCCchhccccCcEEEEEeCCC
Confidence 4578899999961 112122235688999999764
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.56 E-value=3e-08 Score=60.22 Aligned_cols=35 Identities=6% Similarity=-0.014 Sum_probs=24.8
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.+.++||+|... . .......+|.+++|+|.++
T Consensus 165 ~~~~~iliDT~Gi~~---~-~~~l~~~~d~vl~V~d~~~ 199 (349)
T 2www_A 165 AGYDIILIETVGVGQ---S-EFAVADMVDMFVLLLPPAG 199 (349)
T ss_dssp TTCSEEEEECCCC-----C-HHHHHTTCSEEEEEECCC-
T ss_pred CCCCEEEEECCCcch---h-hhhHHhhCCEEEEEEcCCc
Confidence 446789999999531 1 2256778999999999864
No 202
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.55 E-value=1.5e-08 Score=61.26 Aligned_cols=34 Identities=6% Similarity=-0.113 Sum_probs=25.5
Q ss_pred eeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 43 FLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 43 ~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+.+.||||+|...... ...+.+|++++|+|.++
T Consensus 148 ~~~i~liDTpG~~~~~~----~~~~~aD~vl~Vvd~~~ 181 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET----EVARMVDCFISLQIAGG 181 (341)
T ss_dssp TCSEEEEEEECCTTHHH----HHHTTCSEEEEEECC--
T ss_pred CCCEEEEeCCCccchHH----HHHHhCCEEEEEEeCCc
Confidence 46799999999764322 35689999999999864
No 203
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.55 E-value=6.5e-08 Score=58.78 Aligned_cols=35 Identities=6% Similarity=-0.011 Sum_probs=25.9
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
..+.+.||||+|... . .......+|++++|+|.+.
T Consensus 170 ~~~~~iiiDTpGi~~---~-~~~~~~~aD~vl~V~d~~~ 204 (355)
T 3p32_A 170 AGFDVILIETVGVGQ---S-EVAVANMVDTFVLLTLART 204 (355)
T ss_dssp TTCCEEEEEECSCSS---H-HHHHHTTCSEEEEEEESST
T ss_pred CCCCEEEEeCCCCCc---H-HHHHHHhCCEEEEEECCCC
Confidence 357789999999432 2 2245688999999999753
No 204
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.51 E-value=2.7e-08 Score=64.48 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=34.3
Q ss_pred CceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 41 SSFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 41 ~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
.+..+++|.||||+..|..-.. ..++-+|++|+|+|+.+
T Consensus 64 ~~~~~iNlIDTPGH~DF~~Ev~-raL~~~DgavlVVDa~~ 102 (638)
T 3j25_A 64 WENTKVNIIDTPGHMDFLAEVY-RSLSVLDGAILLISAKD 102 (638)
T ss_dssp CSSCBCCCEECCCSSSTHHHHH-HHHTTCSEEECCEESSC
T ss_pred ECCEEEEEEECCCcHHHHHHHH-HHHHHhCEEEEEEeCCC
Confidence 5668899999999999988745 89999999999999864
No 205
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.50 E-value=7.1e-08 Score=57.14 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~ 55 (81)
+|.+|||||||++.+.+............|........ ...+.+|||||-.
T Consensus 126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~----~~~~~l~DtpG~~ 176 (282)
T 1puj_A 126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV----GKELELLDTPGIL 176 (282)
T ss_dssp EESTTSSHHHHHHHHHTSCCC------------CCEEE----TTTEEEEECCCCC
T ss_pred EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe----CCCEEEEECcCcC
Confidence 58999999999988876543221111111211111111 1258999999965
No 206
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.48 E-value=3.9e-07 Score=59.72 Aligned_cols=38 Identities=16% Similarity=0.156 Sum_probs=33.6
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~ 80 (81)
+.+.++|.||||+-.|..-.. ..++-+|++|+|+|+..
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~-~aLr~~DgavlvVDave 120 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVE-RSLRVLDGAVVVFCGTS 120 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHH-HHHHHCSEEEEEEETTT
T ss_pred CCEEEEEEeCCCCcccHHHHH-HHHHHhCeEEEEEECCC
Confidence 468899999999999988745 89999999999999864
No 207
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.41 E-value=2.7e-07 Score=55.01 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=31.0
Q ss_pred EEEEEecCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 45 QYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 45 ~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
++++||+ |++|+.+ ++.|++++|++|+|||++++
T Consensus 64 ~~~iwD~--qer~~~l-~~~~~~~ad~vilV~D~~~~ 97 (301)
T 1u0l_A 64 SGVIENV--LHRKNLL-TKPHVANVDQVILVVTVKMP 97 (301)
T ss_dssp SEEEEEE--CCCSCEE-TTTTEESCCEEEEEECSSTT
T ss_pred eEEEEEE--cccccee-eccccccCCEEEEEEeCCCC
Confidence 7899999 9999999 45999999999999999874
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.35 E-value=2.2e-07 Score=53.39 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=20.7
Q ss_pred cCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 51 CPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 51 ~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
.+||++++.+ |+.||.++|++|||+|++|.
T Consensus 109 ~GGQ~klRpl-Wr~Yy~~TdglIfVVDSsD~ 138 (227)
T 3l82_B 109 QGSRYSVIPQ-IQKVCEVVDGFIYVANAEAH 138 (227)
T ss_dssp --------CC-HHHHHHHCSEEEEEEECBTT
T ss_pred cCcHHHHHHH-HHHHhcCCCEEEEEeccccH
Confidence 4589999999 99999999999999999874
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.32 E-value=2.1e-07 Score=56.29 Aligned_cols=34 Identities=6% Similarity=-0.000 Sum_probs=24.6
Q ss_pred ceeEEEEEecCCCccccccchhhhhccCCEEEEEEEcc
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~~~~~~~~~i~v~D~~ 79 (81)
....+.|+||+|...-. . .....+|.+++++|.+
T Consensus 146 ~~~~~iliDT~Gi~~~~---~-~v~~~~d~vl~v~d~~ 179 (337)
T 2qm8_A 146 AGFDVILVETVGVGQSE---T-AVADLTDFFLVLMLPG 179 (337)
T ss_dssp TTCCEEEEEECSSSSCH---H-HHHTTSSEEEEEECSC
T ss_pred CCCCEEEEECCCCCcch---h-hHHhhCCEEEEEEcCC
Confidence 35678999999965321 1 3457889999999864
No 210
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.31 E-value=8.4e-08 Score=54.38 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|||||||++.+...
T Consensus 44 vG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 44 MGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 589999999998555433
No 211
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.29 E-value=2.5e-06 Score=52.23 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=40.4
Q ss_pred CCCCCCcHhHHHHHHhccC-----CCCceeeecceeeeEEEeecCCceeEEEEEecCCCcccccc-------chhhhh--
Q psy9524 1 MGLRRSGKTSIQKVVFQKM-----SPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF-------DAELIF-- 66 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~-------~~~~~~-- 66 (81)
+|.+|+|||||++.|.+.. ..........|......... . .+.++||||-.....+ .. ..+
T Consensus 168 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~--~~~liDtPG~~~~~~~~~~l~~~~l-~~~~~ 242 (369)
T 3ec1_A 168 VGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE--S--GATLYDTPGIINHHQMAHFVDARDL-KIITP 242 (369)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS--T--TCEEEECCSCCCCSSGGGGSCTTTH-HHHSC
T ss_pred EcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC--C--CeEEEeCCCcCcHHHHHHHHhHHHH-HHHhc
Confidence 5999999999998886651 11111111122222222221 1 2789999995432211 11 222
Q ss_pred -ccCCEEEEEEEc
Q psy9524 67 -ARCGALIFVIDT 78 (81)
Q Consensus 67 -~~~~~~i~v~D~ 78 (81)
+..+.+++++|.
T Consensus 243 ~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 243 KREIHPRVYQLNE 255 (369)
T ss_dssp SSCCCCEEEEECT
T ss_pred ccccCceEEEEcC
Confidence 567888888876
No 212
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.29 E-value=1.6e-07 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=24.2
Q ss_pred eEEEEEecCCCccccccch-----hhhhccCCEEEEEEEcc
Q psy9524 44 LQYQLWDCPGQMDFQDFDA-----ELIFARCGALIFVIDTS 79 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~~~~-----~~~~~~~~~~i~v~D~~ 79 (81)
+.+.||||+|+........ ...+.. +++++++|.+
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~ 148 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPE 148 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGG
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchh
Confidence 5799999999976543311 024466 8888888875
No 213
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.10 E-value=3.8e-08 Score=61.71 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=43.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCCceeeecceeeeEEEeec---CCceeEEEEEecCCCccc--cccch--------hhhhc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIA---NSSFLQYQLWDCPGQMDF--QDFDA--------ELIFA 67 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~D~~G~~~~--~~~~~--------~~~~~ 67 (81)
+|.+|+||||+.+.|........ ..+..+...... .+......+||..|++.+ +.. + ..++.
T Consensus 45 vGlpGsGKSTia~~La~~l~~~~----~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~-~~~~~l~~~~~~l~ 119 (469)
T 1bif_A 45 VGLPARGKTYISKKLTRYLNFIG----VPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQ-CALAALNDVRKFLS 119 (469)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTT----CCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHhccC----CCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 59999999999977754422111 112222211111 122244578999998433 222 1 35676
Q ss_pred cCCEEEEEEEccC
Q psy9524 68 RCGALIFVIDTSM 80 (81)
Q Consensus 68 ~~~~~i~v~D~~~ 80 (81)
.+.+.++|+|.++
T Consensus 120 ~~~G~~vV~D~tn 132 (469)
T 1bif_A 120 EEGGHVAVFDATN 132 (469)
T ss_dssp TTCCSEEEEESCC
T ss_pred hCCCCEEEEeCCC
Confidence 7788899999876
No 214
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.09 E-value=8.2e-06 Score=54.17 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|..++|||||++.+.+.
T Consensus 57 vG~~saGKSSllnaL~g~ 74 (772)
T 3zvr_A 57 VGGQSAGKSSVLENFVGR 74 (772)
T ss_dssp EECTTTCHHHHHHHHHSS
T ss_pred ECCCCCcHHHHHHHHhCC
Confidence 589999999999888665
No 215
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.06 E-value=2.1e-06 Score=50.56 Aligned_cols=21 Identities=19% Similarity=0.430 Sum_probs=17.2
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+...+
T Consensus 8 vG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 8 VGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EESSSSSHHHHHHHHHHHHC-
T ss_pred ECCCCCCHHHHHHHHhCCCCC
Confidence 699999999999999765544
No 216
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.04 E-value=4.2e-06 Score=54.10 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=33.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC--CceeeecceeeeEEE--eecCCceeEEEEEecCCCccc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP--NETLFLEGTNKMTKE--DIANSSFLQYQLWDCPGQMDF 57 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~l~~~D~~G~~~~ 57 (81)
+|.+|||||||++.|.+.... ....+...+.+.... .........+.++||||-...
T Consensus 44 vG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~ 104 (592)
T 1f5n_A 44 VGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 104 (592)
T ss_dssp EEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred ECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcc
Confidence 599999999999988765321 111111223223221 111234567899999997643
No 217
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.04 E-value=9.6e-07 Score=52.89 Aligned_cols=30 Identities=7% Similarity=0.085 Sum_probs=25.5
Q ss_pred cCCCccccccchhhhhccCCEEEEEEEccCC
Q psy9524 51 CPGQMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 51 ~~G~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
.+||++++.+ |+.||.++|++|||+|++|.
T Consensus 194 ~GGQ~~lRpl-Wr~Yy~~tdglIfVVDSsDr 223 (312)
T 3l2o_B 194 QGSRYSVIPQ-IQKVCEVVDGFIYVANAEAH 223 (312)
T ss_dssp ---CCCCCHH-HHHHHHHCSEEEECCBCBTT
T ss_pred CCCHHHHHHH-HHHHhcCCCEEEEEecCCcH
Confidence 5799999999 88999999999999999874
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.99 E-value=3.4e-06 Score=51.62 Aligned_cols=74 Identities=18% Similarity=0.362 Sum_probs=38.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC----c--eeeecceeeeEEEeecCCceeEEEEEecCCCccccc----cch---hhh--
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN----E--TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD----FDA---ELI-- 65 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~----~~~---~~~-- 65 (81)
+|.+|+|||||++.|.+..... . ......|.......+. . .+.++||||-..... +.. ..+
T Consensus 166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--~--~~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 241 (368)
T 3h2y_A 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLD--E--ESSLYDTPGIINHHQMAHYVGKQSLKLITP 241 (368)
T ss_dssp EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESS--S--SCEEEECCCBCCTTSGGGGSCHHHHHHHSC
T ss_pred ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEec--C--CeEEEeCCCcCcHHHHHHHhhHHHHHHhcc
Confidence 5899999999998886653111 1 1111112112222221 1 278999999643321 111 011
Q ss_pred hccCCEEEEEEEc
Q psy9524 66 FARCGALIFVIDT 78 (81)
Q Consensus 66 ~~~~~~~i~v~D~ 78 (81)
.+..+.+++++|.
T Consensus 242 ~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 242 TKEIKPMVFQLNE 254 (368)
T ss_dssp SSCCCCEEEEECT
T ss_pred ccccCceEEEEcC
Confidence 2456777777765
No 219
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.81 E-value=9.3e-06 Score=46.88 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 37 iG~nGsGKSTLl~~l~Gl~~p~ 58 (235)
T 3tif_A 37 MGPSGSGKSTMLNIIGCLDKPT 58 (235)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 6999999999999998776654
No 220
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.78 E-value=3.4e-05 Score=49.15 Aligned_cols=39 Identities=18% Similarity=0.266 Sum_probs=25.0
Q ss_pred ceeEEEEEecCCCccccccchhh---h--hccCCEEEEEEEccC
Q psy9524 42 SFLQYQLWDCPGQMDFQDFDAEL---I--FARCGALIFVIDTSM 80 (81)
Q Consensus 42 ~~~~l~~~D~~G~~~~~~~~~~~---~--~~~~~~~i~v~D~~~ 80 (81)
..+.+.|+||+|........... . ...+|.+++|+|.+.
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~ 225 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASI 225 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccc
Confidence 45678999999976432110101 1 226899999999864
No 221
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.1e-05 Score=44.60 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|||||||++.+.+...
T Consensus 11 ~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 11 LGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHhhCC
Confidence 59999999999988866543
No 222
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.75 E-value=1.4e-05 Score=46.28 Aligned_cols=22 Identities=18% Similarity=0.439 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 30 iG~nGsGKSTLl~~l~Gl~~p~ 51 (240)
T 2onk_A 30 LGPTGAGKSVFLELIAGIVKPD 51 (240)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 223
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.75 E-value=2.1e-05 Score=48.95 Aligned_cols=22 Identities=23% Similarity=0.167 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 75 vG~nGaGKSTLln~L~Gl~~p~ 96 (413)
T 1tq4_A 75 TGETGSGKSSFINTLRGIGNEE 96 (413)
T ss_dssp EECTTSSHHHHHHHHHTCCTTS
T ss_pred ECCCCCcHHHHHHHHhCCCCcc
Confidence 5999999999999998765543
No 224
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.73 E-value=1.1e-05 Score=46.21 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 36 iG~nGsGKSTLl~~l~Gl~~p~ 57 (224)
T 2pcj_A 36 IGASGSGKSTLLYILGLLDAPT 57 (224)
T ss_dssp EECTTSCHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 225
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.73 E-value=1.3e-05 Score=45.93 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=18.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+..++
T Consensus 22 ~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 22 SAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp ECCTTSCHHHHHHHHHHHSCT
T ss_pred ECCCCCCHHHHHHHHhccCCC
Confidence 599999999999998776653
No 226
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.72 E-value=1.5e-05 Score=46.70 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 38 iG~nGsGKSTLlk~l~Gl~~p~ 59 (262)
T 1b0u_A 38 IGSSGSGKSTFLRCINFLEKPS 59 (262)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 227
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.71 E-value=1.2e-05 Score=45.14 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 10 vGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 10 SGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999998886543
No 228
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.70 E-value=1.7e-05 Score=46.34 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 39 iG~nGsGKSTLlk~l~Gl~~p~ 60 (257)
T 1g6h_A 39 IGPNGSGKSTLINVITGFLKAD 60 (257)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 229
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.70 E-value=1.2e-05 Score=45.21 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 26 ~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 26 SGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 6999999999999887655
No 230
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.69 E-value=1.9e-05 Score=45.13 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 41 iG~NGsGKSTLlk~l~Gl~~p~ 62 (214)
T 1sgw_A 41 HGPNGIGKTTLLKTISTYLKPL 62 (214)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 231
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.69 E-value=1.8e-05 Score=46.77 Aligned_cols=22 Identities=18% Similarity=0.318 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 40 iGpnGsGKSTLl~~l~Gl~~p~ 61 (275)
T 3gfo_A 40 LGGNGVGKSTLFQNFNGILKPS 61 (275)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHHcCCCCC
Confidence 6999999999999998776654
No 232
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.69 E-value=1.9e-05 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=19.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 40 ~G~nGsGKSTLl~~l~Gl~~p~ 61 (229)
T 2pze_A 40 AGSTGAGKTSLLMMIMGELEPS 61 (229)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCcCC
Confidence 5999999999999998876654
No 233
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=1.4e-05 Score=44.39 Aligned_cols=19 Identities=26% Similarity=0.480 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 6 ~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 6 TGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5999999999998886554
No 234
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.68 E-value=1.9e-05 Score=45.91 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 41 ~G~nGsGKSTLl~~l~Gl~~p~ 62 (247)
T 2ff7_A 41 VGRSGSGKSTLTKLIQRFYIPE 62 (247)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999997776654
No 235
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.68 E-value=2e-05 Score=46.32 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 56 iG~NGsGKSTLlk~l~Gl~~p~ 77 (263)
T 2olj_A 56 IGPSGSGKSTFLRCLNLLEDFD 77 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred EcCCCCcHHHHHHHHHcCCCCC
Confidence 5999999999999998776654
No 236
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.67 E-value=2e-05 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 43 iG~nGsGKSTLl~~l~Gl~~p~ 64 (266)
T 4g1u_C 43 IGPNGAGKSTLLRLLTGYLSPS 64 (266)
T ss_dssp ECCTTSCHHHHHHHHTSSSCCS
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 6999999999999997766554
No 237
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.67 E-value=2.2e-05 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 34 ~G~nGsGKSTLl~~l~Gl~~p~ 55 (243)
T 1mv5_A 34 AGPSGGGKSTIFSLLERFYQPT 55 (243)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999997766554
No 238
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.67 E-value=2e-05 Score=45.57 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 38 ~G~nGsGKSTLl~~l~Gl~~p~ 59 (240)
T 1ji0_A 38 IGANGAGKTTTLSAIAGLVRAQ 59 (240)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 239
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.66 E-value=2.1e-05 Score=46.55 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 53 iG~NGsGKSTLlk~l~Gl~~p~ 74 (279)
T 2ihy_A 53 YGLNGAGKTTLLNILNAYEPAT 74 (279)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 240
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.66 E-value=2.2e-05 Score=45.95 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 47 ~G~NGsGKSTLlk~l~Gl~~p~ 68 (256)
T 1vpl_A 47 IGPNGAGKTTTLRIISTLIKPS 68 (256)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.65 E-value=1.9e-05 Score=44.28 Aligned_cols=21 Identities=24% Similarity=0.446 Sum_probs=17.0
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|||||||++.|..+.+.
T Consensus 7 ~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 7 SGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp ECCTTSSHHHHHHHHHHHCTT
T ss_pred ECCCCCCHHHHHHHHHHhCCC
Confidence 499999999999877665543
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.64 E-value=1.4e-05 Score=44.27 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||||++.+.+...
T Consensus 7 ~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 7 SGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp ESSSSSSHHHHHHHHHHHCG
T ss_pred ECCCCCCHHHHHHHHHhhCC
Confidence 59999999999998876543
No 243
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.63 E-value=2.4e-05 Score=46.05 Aligned_cols=22 Identities=23% Similarity=0.462 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 51 ~G~nGsGKSTLlk~l~Gl~~p~ 72 (271)
T 2ixe_A 51 VGPNGSGKSTVAALLQNLYQPT 72 (271)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.62 E-value=2e-05 Score=43.93 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 13 ~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 13 SAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECcCCCCHHHHHHHHHhhC
Confidence 5999999999999886654
No 245
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.62 E-value=2.5e-05 Score=45.52 Aligned_cols=22 Identities=18% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 32 iG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 32 VGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCE
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776553
No 246
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.61 E-value=2.7e-05 Score=45.45 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p~ 58 (253)
T 2nq2_C 37 LGQNGCGKSTLLDLLLGIHRPI 58 (253)
T ss_dssp ECCSSSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876664
No 247
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.61 E-value=7.1e-05 Score=47.05 Aligned_cols=55 Identities=18% Similarity=0.142 Sum_probs=33.4
Q ss_pred CCCCCCcHhHHHHHHhcc-------------------CCCCceeeecceeeeEEEe------ecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQK-------------------MSPNETLFLEGTNKMTKED------IANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~-------------------~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~D~~G~~ 55 (81)
+|+.++|||+||+.+.+. +.... .....+.++.... ..++....+-+.||+|..
T Consensus 73 ~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~-t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDTeG~~ 151 (447)
T 3q5d_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151 (447)
T ss_dssp EESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCC-SSCCCCCEEEEESSCEEEECSSSCEEEEEEEEEECCC
T ss_pred ECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCC-CCCCceeEEEEecCccccccCCCCcceEEEEcCCccc
Confidence 589999999999888643 11111 1112333443321 123556889999999964
Q ss_pred c
Q psy9524 56 D 56 (81)
Q Consensus 56 ~ 56 (81)
.
T Consensus 152 ~ 152 (447)
T 3q5d_A 152 D 152 (447)
T ss_dssp S
T ss_pred c
Confidence 3
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.61 E-value=2e-05 Score=44.88 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 29 vGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 29 CGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHhhC
Confidence 5999999999999887765
No 249
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.61 E-value=2.9e-05 Score=47.49 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 47 lGpnGsGKSTLLr~iaGl~~p~ 68 (355)
T 1z47_A 47 LGPSGSGKTTILRLIAGLERPT 68 (355)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 250
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.61 E-value=2.2e-05 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 36 lGpsGsGKSTLLr~iaGl~~p~ 57 (359)
T 3fvq_A 36 IGASGCGKTTLLRCLAGFEQPD 57 (359)
T ss_dssp EESTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCchHHHHHHHHhcCCCCC
Confidence 5999999999999998876665
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.61 E-value=2.8e-05 Score=45.65 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 39 iG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 39 AGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp ECSTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998776654
No 252
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.60 E-value=3.1e-05 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 35 LGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCchHHHHHHHHhcCCCCC
Confidence 5999999999999998776654
No 253
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.59 E-value=3.2e-05 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~ 56 (359)
T 2yyz_A 35 LGPSGCGKTTTLLMLAGIYKPT 56 (359)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS
T ss_pred EcCCCchHHHHHHHHHCCCCCC
Confidence 5999999999999998776654
No 254
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.59 E-value=3.2e-05 Score=47.69 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 35 lGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 35 VGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred EcCCCchHHHHHHHHHcCCCCC
Confidence 6999999999999998776654
No 255
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.58 E-value=3.3e-05 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.400 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 35 lGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 35 LGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp ECSTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCcHHHHHHHHHHcCCCCC
Confidence 5999999999999998776654
No 256
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.58 E-value=3.4e-05 Score=47.41 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 43 lGpnGsGKSTLLr~iaGl~~p~ 64 (372)
T 1v43_A 43 LGPSGCGKTTTLRMIAGLEEPT 64 (372)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCChHHHHHHHHHcCCCCC
Confidence 5999999999999998776654
No 257
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.58 E-value=1.7e-05 Score=45.79 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+-..+
T Consensus 37 ~G~nGsGKSTLl~~l~Gl~~p 57 (237)
T 2cbz_A 37 VGQVGCGKSSLLSALLAEMDK 57 (237)
T ss_dssp ECSTTSSHHHHHHHHTTCSEE
T ss_pred ECCCCCCHHHHHHHHhcCCCC
Confidence 599999999999999776544
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.57 E-value=2.8e-05 Score=42.47 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|+.|+|||||++.+.+..
T Consensus 39 ~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 39 NGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp ECSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 5999999999999997766
No 259
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.57 E-value=0.00012 Score=45.82 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 48 vG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 48 VGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp ECSTTSSSHHHHHHHHTSC
T ss_pred ECCCCCCHHHHHHHHhCcc
Confidence 5999999999999997763
No 260
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.56 E-value=2.8e-05 Score=47.42 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 32 lGpnGsGKSTLLr~iaGl~~p~ 53 (348)
T 3d31_A 32 LGPTGAGKTLFLELIAGFHVPD 53 (348)
T ss_dssp ECCCTHHHHHHHHHHHTSSCCS
T ss_pred ECCCCccHHHHHHHHHcCCCCC
Confidence 5999999999999998776654
No 261
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.56 E-value=3.5e-05 Score=43.43 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.|.....+
T Consensus 14 ~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 14 SGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp ECCTTSCHHHHHHHHHHSTTC
T ss_pred ECcCCCCHHHHHHHHHhhCCC
Confidence 599999999999888766543
No 262
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.55 E-value=3.3e-05 Score=45.98 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=18.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+...+.
T Consensus 175 ~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 175 AGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp ECSTTSSHHHHHHHHSTTCCCC
T ss_pred ECCCCCcHHHHHHHhccccccc
Confidence 5999999999999997665543
No 263
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.54 E-value=4.3e-05 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 60 iGpnGaGKSTLlr~i~GL~~p~ 81 (366)
T 3tui_C 60 IGASGAGKSTLIRCVNLLERPT 81 (366)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred EcCCCchHHHHHHHHhcCCCCC
Confidence 6999999999999998776654
No 264
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.51 E-value=4.2e-05 Score=44.76 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=17.4
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||||++.+.+-..
T Consensus 52 ~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 52 VGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCCCHHHHHHHHhccCC
Confidence 59999999999999977654
No 265
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.51 E-value=4.3e-05 Score=44.89 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+.. +.
T Consensus 36 ~G~NGsGKSTLlk~l~Gl~-p~ 56 (263)
T 2pjz_A 36 LGPNGSGKTTLLRAISGLL-PY 56 (263)
T ss_dssp ECCTTSSHHHHHHHHTTSS-CC
T ss_pred ECCCCCCHHHHHHHHhCCC-CC
Confidence 5999999999999998876 54
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.50 E-value=3.8e-05 Score=43.46 Aligned_cols=20 Identities=15% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|||||||++.|.....
T Consensus 25 ~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 25 IGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ECCTTSSHHHHHHHHHHHCT
T ss_pred ECcCCCCHHHHHHHHHhhCC
Confidence 59999999999988866544
No 267
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.49 E-value=4e-05 Score=44.60 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+-
T Consensus 35 ~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 35 MGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ECSTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999775
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.48 E-value=3.4e-05 Score=42.52 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+.
T Consensus 15 ~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 15 SGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EECTTSCHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 599999999999998665
No 269
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.48 E-value=2.8e-05 Score=47.45 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|||||||++.+.+-..+.
T Consensus 37 lGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 37 LGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp ECSCHHHHHHHHHHHHTSSCCS
T ss_pred ECCCCCcHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 270
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.48 E-value=4.2e-05 Score=44.92 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+-
T Consensus 52 ~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 52 MGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECCTTSSHHHHHHHHHTC
T ss_pred ECCCCCCHHHHHHHHhCC
Confidence 599999999999999775
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.47 E-value=3.4e-05 Score=43.40 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 28 ~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 28 SGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp ECCTTSCTHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999998885544
No 272
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.45 E-value=3.5e-05 Score=43.80 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+.
T Consensus 28 iG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 28 LGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp ECCTTSSTTHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcC
Confidence 599999999999998765
No 273
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.45 E-value=3.9e-05 Score=42.06 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.7
Q ss_pred CCCCCCcHhHHHHH
Q psy9524 1 MGLRRSGKTSIQKV 14 (81)
Q Consensus 1 lG~~~vGKTsll~~ 14 (81)
+|++|+|||||++.
T Consensus 15 ~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 15 IGSSGSGKSTFAKK 28 (171)
T ss_dssp ECCTTSCHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 59999999999984
No 274
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.44 E-value=4.3e-05 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 86 vG~sGsGKSTLl~ll~gl~~p~ 107 (306)
T 3nh6_A 86 VGPSGAGKSTILRLLFRFYDIS 107 (306)
T ss_dssp ESSSCHHHHHHHHHHTTSSCCS
T ss_pred ECCCCchHHHHHHHHHcCCCCC
Confidence 6999999999999997776664
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.44 E-value=6.6e-05 Score=44.77 Aligned_cols=20 Identities=25% Similarity=0.165 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|||||||++.+. ...+
T Consensus 171 ~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 171 AGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp ECSTTSSHHHHHHHHH-SCCC
T ss_pred ECCCCCCHHHHHHHHH-HhhC
Confidence 5999999999999887 5443
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.44 E-value=6.1e-05 Score=41.90 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+||||+++.+.+..
T Consensus 12 ~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 12 SGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp ECSTTSCHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhh
Confidence 5999999999999887665
No 277
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.42 E-value=7.1e-05 Score=45.84 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=17.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|||||||++.|.+...
T Consensus 221 vG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 221 AGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp ECCTTSSHHHHHHHHHCCSS
T ss_pred ECCCCccHHHHHHHHhcccc
Confidence 69999999999999977655
No 278
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.39 E-value=4.2e-05 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 70 ~G~NGsGKSTLlk~l~Gl~~p~ 91 (290)
T 2bbs_A 70 AGSTGAGKTSLLMMIMGELEPS 91 (290)
T ss_dssp EESTTSSHHHHHHHHTTSSCEE
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 5999999999999997765543
No 279
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.36 E-value=8.1e-05 Score=40.40 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+||||+++.|.....
T Consensus 10 ~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 10 VGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp ECCTTSCHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999998866543
No 280
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.34 E-value=7.3e-05 Score=41.25 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+||||+++.+..
T Consensus 8 ~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 8 TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhc
Confidence 59999999999988865
No 281
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.33 E-value=7.5e-05 Score=45.43 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=18.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.|.+...+.
T Consensus 176 vG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 176 LGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp ECCTTSHHHHHHHHHHHHTTCE
T ss_pred ECCCCCCHHHHHHHHHHHhCCC
Confidence 5999999999999887665543
No 282
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.31 E-value=6e-05 Score=42.95 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=10.9
Q ss_pred CCCCCCcHhHHHHHHh-ccC
Q psy9524 1 MGLRRSGKTSIQKVVF-QKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~-~~~ 19 (81)
+|++|+|||||++.+. +..
T Consensus 33 ~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 33 SSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECSCC----CHHHHHHC---
T ss_pred ECCCCCCHHHHHHHHHhcCC
Confidence 5999999999999987 554
No 283
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.30 E-value=0.00011 Score=40.23 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||+|++.+.+..
T Consensus 44 ~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 44 VGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999998775544
No 284
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.30 E-value=8.7e-05 Score=41.57 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 7 ~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 7 TGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp ESCCSSCHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHhhc
Confidence 5999999999998885543
No 285
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.30 E-value=6.7e-05 Score=46.40 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=16.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|||||||++.+.+-.
T Consensus 53 lGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 53 LGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EESTTSSHHHHHHHHHTCS
T ss_pred ECCCCChHHHHHHHHhCCC
Confidence 5999999999999997643
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.29 E-value=9e-05 Score=42.27 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=14.1
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||||++.+.
T Consensus 36 ~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 36 TGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHH
Confidence 5999999999998765
No 287
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.29 E-value=9e-05 Score=41.52 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++||||||+++.|...+.
T Consensus 18 ~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 18 CGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp ECCTTSCHHHHHHHHHHHCT
T ss_pred ECCCCCCHHHHHHHHHHhCc
Confidence 49999999999988866653
No 288
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.28 E-value=7.6e-05 Score=42.07 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+.
T Consensus 31 ~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 31 FGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 589999999999888664
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.27 E-value=9.9e-05 Score=41.24 Aligned_cols=18 Identities=44% Similarity=0.590 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+||||+++.+.+.
T Consensus 35 ~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 35 MGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 599999999999888543
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.26 E-value=7.6e-05 Score=41.81 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 12 ~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 12 AGGTASGKTTLAQALARTL 30 (211)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4899999999998886543
No 291
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.25 E-value=0.00015 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 53 vG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 53 VGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999998876554
No 292
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.24 E-value=0.0001 Score=43.14 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 31 ~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 31 TGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp ECSTTCSHHHHHHHHHHHH
T ss_pred ECCCCccHHHHHHHHHHhC
Confidence 5999999999998886544
No 293
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.24 E-value=0.00014 Score=46.61 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 31 iGpNGaGKSTLlkiL~Gl~~p~ 52 (538)
T 3ozx_A 31 LGKNGVGKTTVLKILAGEIIPN 52 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC
T ss_pred ECCCCCcHHHHHHHHhcCCCCC
Confidence 6999999999999998876654
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.23 E-value=0.00011 Score=44.10 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 96 ~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 96 AGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECCCCchHHHHHHHHHhhc
Confidence 5999999999998886544
No 295
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=2.6e-05 Score=46.81 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|||||||++.+.+...
T Consensus 179 vG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 179 AGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp EESHHHHHHHHHHHHCC---
T ss_pred ECCCCCCHHHHHHHhccccc
Confidence 59999999999999966544
No 296
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.22 E-value=0.00017 Score=46.77 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=17.4
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||||++.+.+...|
T Consensus 51 vG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 51 IGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCTTSCHHHHHHHHHSCC--
T ss_pred ECCCCChHHHHHHHHhCCCCC
Confidence 799999999999999877644
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.21 E-value=0.00011 Score=44.07 Aligned_cols=19 Identities=16% Similarity=0.375 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.|.+-.
T Consensus 132 vGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 132 IGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhhhc
Confidence 5999999999998886543
No 298
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.21 E-value=0.00012 Score=42.05 Aligned_cols=16 Identities=25% Similarity=0.389 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+||||+++.+.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 33 LGPPGSGKGTVCQRIA 48 (246)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999999886
No 299
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00017 Score=46.86 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 109 vGpNGaGKSTLLkiL~Gll~P~ 130 (608)
T 3j16_B 109 VGTNGIGKSTALKILAGKQKPN 130 (608)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCC
T ss_pred ECCCCChHHHHHHHHhcCCCCC
Confidence 6999999999999998776654
No 300
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.20 E-value=0.00013 Score=40.81 Aligned_cols=18 Identities=33% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+||||+++.+.+.
T Consensus 31 ~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 31 TGLSGSGKSTLACALNQM 48 (200)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999998877544
No 301
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.15 E-value=0.00016 Score=44.10 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 181 vG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 181 AGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp EESSSSCHHHHHHHHHTTSCTT
T ss_pred ECCCCCCHHHHHHHHHhcCCCC
Confidence 5899999999999997776654
No 302
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.14 E-value=0.00016 Score=39.33 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+||||+++.+..
T Consensus 14 ~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 14 MGVSGSGKSAVASEVAH 30 (175)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 59999999999988754
No 303
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.13 E-value=9.3e-05 Score=44.30 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++||||||+++.+.+.
T Consensus 108 vG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 108 VGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 599999999999887543
No 304
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.12 E-value=0.00023 Score=45.85 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 375 vG~sGsGKSTll~~l~g~~~p~ 396 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYDVD 396 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 6999999999999997776654
No 305
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.12 E-value=0.00022 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 123 iG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 123 VGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCC
T ss_pred ECCCCChHHHHHHHHhCCCCCC
Confidence 6999999999999998776554
No 306
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.10 E-value=0.00016 Score=38.96 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 7 ~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 7 EGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999888554
No 307
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.10 E-value=0.00025 Score=38.62 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=16.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|.+|+||||+.+.|...+.
T Consensus 9 ~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 9 NGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp ECCTTSSHHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhcC
Confidence 49999999999988866543
No 308
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.10 E-value=0.00016 Score=43.63 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 177 ~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 177 CGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp EESTTSCHHHHHHHGGGGSCTT
T ss_pred ECCCCCCHHHHHHHHhCCCcCC
Confidence 5899999999999998776654
No 309
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.08 E-value=0.00018 Score=43.76 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 77 iG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 77 FAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5899999999999998876654
No 310
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.07 E-value=0.00019 Score=46.30 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 376 vG~sGsGKSTLl~~l~g~~~p~ 397 (595)
T 2yl4_A 376 VGPSGSGKSTVLSLLLRLYDPA 397 (595)
T ss_dssp ECCTTSSSTHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999998776664
No 311
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.07 E-value=0.0002 Score=46.08 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 375 vG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 375 VGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EECTTSSHHHHHHHHTTTTCCS
T ss_pred ECCCCCCHHHHHHHHhhccCCC
Confidence 5999999999999997776654
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.06 E-value=0.00021 Score=41.16 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+.
T Consensus 31 ~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 31 SGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999888553
No 313
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.06 E-value=0.00023 Score=41.87 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=17.3
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+|||+|++.+.+....
T Consensus 50 ~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 50 AGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp ESSTTSCHHHHHHHHHHHTTC
T ss_pred ECCCCCcHHHHHHHHHHHcCC
Confidence 499999999999998765443
No 314
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.02 E-value=0.00022 Score=44.70 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 163 vG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 163 FAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EECTTSSHHHHHHHHHHHSCCS
T ss_pred ECCCCCCHHHHHHHHhcccCCC
Confidence 5899999999999998876554
No 315
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.02 E-value=0.00033 Score=44.93 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=19.1
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~p~ 321 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEITAD 321 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876664
No 316
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00017 Score=45.42 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.9
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||||++.+.+-..
T Consensus 144 vGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 144 VGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp EESTTSSHHHHHHHHHHTTH
T ss_pred ECCCCCCHHHHHHHHhCccc
Confidence 59999999999999966543
No 317
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.02 E-value=0.00024 Score=42.46 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++||||||+++.+.+.
T Consensus 106 vG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 106 VGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 699999999999877543
No 318
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.02 E-value=0.00026 Score=38.07 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=13.7
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
.|++||||||+.+.|
T Consensus 7 ~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 7 TGMPGSGKSEFAKLL 21 (179)
T ss_dssp ECCTTSCHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 499999999999888
No 319
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.01 E-value=0.00016 Score=38.91 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||+|++.+.+..
T Consensus 42 ~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 42 WGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp ESSSTTTTCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999998886554
No 320
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.01 E-value=0.00025 Score=45.82 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.2
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 387 vG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSCCS
T ss_pred ECCCCCcHHHHHHHHhcCcCCC
Confidence 5999999999999998777665
No 321
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.01 E-value=0.00021 Score=45.32 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+-
T Consensus 35 iG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 35 SGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHhcC
Confidence 599999999999988554
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.00 E-value=0.0002 Score=39.23 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=14.3
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+|||||++.+..
T Consensus 32 ~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 32 VGANGSGKSNIGDAILF 48 (182)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58999999999987743
No 323
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.00 E-value=0.00026 Score=40.77 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||+|++.+.+...
T Consensus 55 ~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 55 VGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp ECCTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999998866543
No 324
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.99 E-value=0.00039 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 388 ~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 388 VGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCCCCC
Confidence 5999999999999998876654
No 325
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.98 E-value=0.00026 Score=39.48 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++||||||+.+.|...
T Consensus 31 ~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 31 TGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 599999999999887543
No 326
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.98 E-value=0.00028 Score=39.81 Aligned_cols=18 Identities=22% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+||||+.+.+...
T Consensus 11 ~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 11 DGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999888554
No 327
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.98 E-value=0.00029 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.5
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+|||||++.+...
T Consensus 12 ~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 12 AAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHh
Confidence 489999999998766443
No 328
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.98 E-value=0.00026 Score=42.60 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||+|++.+.+..
T Consensus 57 ~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 57 AGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp ESSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 4999999999999886654
No 329
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.97 E-value=0.0001 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+.+
T Consensus 8 vG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 8 VGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EESCHHHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 5899999999998775443
No 330
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.96 E-value=0.00041 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 318 ~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 318 VGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp ECCTTSSHHHHHHHHHTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 5999999999999998876654
No 331
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.96 E-value=0.00027 Score=39.40 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 24 ~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 24 MGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999887544
No 332
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.94 E-value=0.00017 Score=41.62 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+..-
T Consensus 33 ~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 33 SGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HSCCSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhcc
Confidence 599999999999887544
No 333
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.94 E-value=0.00031 Score=42.50 Aligned_cols=18 Identities=28% Similarity=0.327 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+||||+++.+.+.
T Consensus 135 vG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 135 VGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999999877543
No 334
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.92 E-value=0.00077 Score=42.43 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=22.4
Q ss_pred eEEEEEecCCCccccc-----cchhhhhccCCEEEEEEEcc
Q psy9524 44 LQYQLWDCPGQMDFQD-----FDAELIFARCGALIFVIDTS 79 (81)
Q Consensus 44 ~~l~~~D~~G~~~~~~-----~~~~~~~~~~~~~i~v~D~~ 79 (81)
+.+-|.||+|...... +..-......+.+++|+|.+
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~ 223 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT 223 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence 6788999999543221 10001223568999999975
No 335
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.91 E-value=0.0002 Score=46.14 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 373 vG~sGsGKSTll~~l~g~~~p~ 394 (578)
T 4a82_A 373 VGMSGGGKSTLINLIPRFYDVT 394 (578)
T ss_dssp ECSTTSSHHHHHTTTTTSSCCS
T ss_pred ECCCCChHHHHHHHHhcCCCCC
Confidence 5999999999999887776664
No 336
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.91 E-value=0.00033 Score=42.81 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||||++.+.+...
T Consensus 129 ~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 129 TGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp ECSTTSCHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhccc
Confidence 59999999999988855443
No 337
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.90 E-value=0.00041 Score=41.59 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|.+|+|||||++.+.+..
T Consensus 10 ~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 10 TGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EESSSSSCHHHHHHHHHSC
T ss_pred EecCCCCHHHHHHHHHhhc
Confidence 4899999999998886553
No 338
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.00042 Score=37.51 Aligned_cols=18 Identities=33% Similarity=0.411 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+...
T Consensus 49 ~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 49 IGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999777544
No 339
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.88 E-value=0.00028 Score=42.07 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||||++.+.+..
T Consensus 86 ~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 86 AGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EECTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4899999999998886643
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.88 E-value=0.00037 Score=42.09 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|||||||++.+...
T Consensus 98 ~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 98 AGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999887544
No 341
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.87 E-value=0.00042 Score=38.67 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=15.0
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|.+|+||||+.+.+..
T Consensus 8 ~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 8 TGGIGSGKTTIANLFTD 24 (206)
T ss_dssp ECSTTSCHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999998855
No 342
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.86 E-value=0.00039 Score=40.62 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.8
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||+|++.+.+...
T Consensus 79 ~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 79 VGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp ECCTTSSHHHHHHHHHHHTT
T ss_pred ECCCcChHHHHHHHHHHHcC
Confidence 49999999999998866543
No 343
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.86 E-value=0.00054 Score=44.58 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.4
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~ 23 (81)
+|++|+|||||++.+.+-..+..
T Consensus 384 iG~NGsGKSTLlk~l~Gl~~p~~ 406 (608)
T 3j16_B 384 MGENGTGKTTLIKLLAGALKPDE 406 (608)
T ss_dssp ESCTTSSHHHHHHHHHTSSCCSB
T ss_pred ECCCCCcHHHHHHHHhcCCCCCC
Confidence 59999999999999988766653
No 344
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.86 E-value=0.00032 Score=38.80 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 6 ~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 6 FGTVGAGKSTISAEISKK 23 (205)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCccCHHHHHHHHHHh
Confidence 499999999999888654
No 345
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.85 E-value=0.00059 Score=43.54 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=18.7
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+||||+++.+.+...+.
T Consensus 266 ~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 266 VGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp EESTTSSHHHHHHHHGGGSCTT
T ss_pred ECCCCCCHHHHHHHHHhhCCCC
Confidence 4899999999999997776654
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.85 E-value=0.00053 Score=37.19 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+|+||||+.+.|..
T Consensus 8 ~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 8 IGCPGSGKSTWAREFIA 24 (181)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ecCCCCCHHHHHHHHHh
Confidence 49999999999987755
No 347
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.84 E-value=0.00031 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=18.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 375 vG~sGsGKSTll~~l~g~~~~~ 396 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLIDPE 396 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCccCC
Confidence 5999999999999997776664
No 348
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.82 E-value=0.00043 Score=44.18 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.|.+.
T Consensus 299 VGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcccHHHHHHHHHHH
Confidence 699999999999877543
No 349
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.82 E-value=0.00044 Score=42.35 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++||||||+++.+.+.
T Consensus 163 vG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 163 VGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHhh
Confidence 699999999999877543
No 350
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.00045 Score=38.80 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.7
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||+|++.+.
T Consensus 29 ~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 29 TGEPGTGKTIFSLHFI 44 (235)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 4999999999987664
No 351
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.81 E-value=0.00046 Score=40.00 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+||||+++.+.
T Consensus 33 ~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 33 DGPSGAGKGTLCKALA 48 (252)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999998886
No 352
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.80 E-value=0.00029 Score=40.21 Aligned_cols=18 Identities=28% Similarity=0.119 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+||||+++.+.+.
T Consensus 26 ~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 26 EGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp ECSTTSCHHHHHHTTGGG
T ss_pred ECCCCCCHHHHHHHHHhc
Confidence 499999999999888654
No 353
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.79 E-value=0.00045 Score=42.36 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+||||+++.+.+...
T Consensus 142 vG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 142 TGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp ECSSSSSHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhhcC
Confidence 59999999999988865443
No 354
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.79 E-value=0.00058 Score=46.68 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.3
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+...+.
T Consensus 705 iGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 705 IGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp CSCCCHHHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999998876654
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.77 E-value=0.00066 Score=37.13 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 9 ~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 9 TGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877443
No 356
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.75 E-value=0.00045 Score=43.08 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.2
Q ss_pred CCCCCCcHhHHHHHHhccCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSP 21 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~ 21 (81)
+|++|+||||+++.+.+...+
T Consensus 173 ~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 173 TGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp ECSTTSCHHHHHHHHHHHHCC
T ss_pred ECCCCCCHHHHHHHHHhhcCC
Confidence 599999999999888665544
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.75 E-value=0.00049 Score=38.44 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|.+|+||||+++.|...+
T Consensus 27 ~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 27 SGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EESTTSSHHHHHHHHHTTS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4899999999999886654
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.73 E-value=0.00045 Score=38.45 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|.+|+||||+.+.|.+
T Consensus 7 ~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 7 TGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHH
Confidence 48999999999988855
No 359
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.70 E-value=0.00055 Score=37.46 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+||||||+.+.|...+
T Consensus 7 ~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 7 TGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EECTTSCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4899999999998775543
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.69 E-value=0.0005 Score=38.45 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=14.4
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+||||+++.+.+
T Consensus 28 ~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 28 DGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999987754
No 361
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.65 E-value=0.00071 Score=40.06 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+||||+.+.|...+
T Consensus 39 ~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 39 GGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp ECCTTSCTHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999998876554
No 362
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.64 E-value=0.00072 Score=36.99 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+||||||+.+.|...
T Consensus 11 ~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 11 IGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999998877543
No 363
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.64 E-value=0.00054 Score=37.60 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 11 TGHPATGKTTLSQALATG 28 (193)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999877543
No 364
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.64 E-value=0.00077 Score=36.87 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|.+||||||+.+.|..
T Consensus 10 ~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 10 LGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 49999999999887753
No 365
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.63 E-value=0.00071 Score=36.84 Aligned_cols=18 Identities=22% Similarity=0.562 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+||||+.+.|...
T Consensus 10 ~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 10 IGFMGSGKSTLARALAKD 27 (175)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999998877543
No 366
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.62 E-value=0.0011 Score=36.75 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+|+||||+.+.|...+
T Consensus 10 ~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 10 EGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp ECCTTSSHHHHHHHHHHTS
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4899999999998887665
No 367
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.00077 Score=38.22 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=14.5
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+|||+|++.+..
T Consensus 30 ~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 30 FGEFRTGKTQICHTLAV 46 (243)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHH
Confidence 49999999999877655
No 368
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.62 E-value=0.00082 Score=36.14 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.9
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|+.|+|||+|+..+
T Consensus 29 ~G~NGsGKStil~Ai 43 (149)
T 1f2t_A 29 IGQNGSGKSSLLDAI 43 (149)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999998655
No 369
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.62 E-value=0.00085 Score=37.77 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+...
T Consensus 58 ~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 58 WGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999777443
No 370
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.61 E-value=0.00083 Score=36.69 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 11 ~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 11 TGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999888553
No 371
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.59 E-value=0.0006 Score=36.88 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+....
T Consensus 49 ~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 49 LGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp ESCGGGCHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999999997775443
No 372
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.59 E-value=0.00092 Score=37.36 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+...
T Consensus 51 ~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 51 SGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999777443
No 373
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.59 E-value=0.001 Score=38.31 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+.+..
T Consensus 51 ~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 51 VGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp ECCTTSCHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHHc
Confidence 4999999999998886543
No 374
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.58 E-value=0.00082 Score=37.73 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+||||+.+.|...+
T Consensus 6 ~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 6 MGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp ECSTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999998885443
No 375
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.58 E-value=0.00085 Score=36.64 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.+...
T Consensus 17 ~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 17 TGTPGVGKTTLGKELASK 34 (180)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 499999999999888544
No 376
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.57 E-value=0.00064 Score=40.04 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=14.5
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||+|++.+...
T Consensus 41 ~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 41 TSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHH
Confidence 489999999998766443
No 377
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.57 E-value=0.00083 Score=37.31 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+|+||||+.+.|...+
T Consensus 10 ~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 10 EGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4899999999998885543
No 378
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.55 E-value=0.0011 Score=36.76 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||+|++.+.+..
T Consensus 60 ~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 60 HGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 3999999999997775543
No 379
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.55 E-value=0.00094 Score=36.68 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.+...
T Consensus 19 ~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 19 TGLPGSGKTTIATRLADL 36 (186)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 489999999998877443
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.54 E-value=0.00093 Score=39.73 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||||++.+...+
T Consensus 37 ~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 37 SGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999987774443
No 381
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.53 E-value=0.00094 Score=37.32 Aligned_cols=17 Identities=29% Similarity=0.196 Sum_probs=14.0
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+|||+|+..+..
T Consensus 26 ~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 26 YGPYASGKTTLALQTGL 42 (220)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999866644
No 382
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.52 E-value=0.001 Score=36.76 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=13.6
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|.+|+|||||+..+..
T Consensus 10 ~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999866643
No 383
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.52 E-value=0.0011 Score=38.67 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=16.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||+|++.+.+...
T Consensus 57 ~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 57 YGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp ESSSSSSHHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 39999999999988866543
No 384
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.50 E-value=0.0011 Score=36.58 Aligned_cols=18 Identities=22% Similarity=0.272 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+...
T Consensus 44 ~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 44 SGPPGTGKTATAIALARD 61 (226)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999777543
No 385
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.46 E-value=0.0014 Score=36.08 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 6 ~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 6 EGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999999888554
No 386
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.46 E-value=0.0013 Score=39.19 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||+|++.+.+..
T Consensus 43 ~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 43 YGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp ECSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHH
Confidence 3999999999998875543
No 387
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.45 E-value=0.0012 Score=38.67 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+.+..
T Consensus 60 ~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 60 FGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp ESSSSSCHHHHHHHHHHHT
T ss_pred ECcCCCCHHHHHHHHHHHh
Confidence 3999999999998886654
No 388
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.45 E-value=0.00087 Score=38.02 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+||||||+.+.|...+
T Consensus 13 ~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 13 MGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EECTTSSHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 4899999999998885443
No 389
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.44 E-value=0.00066 Score=39.31 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.8
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+||||+.+.|...+
T Consensus 38 ~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 38 GGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp ESCGGGTTHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999998876554
No 390
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.44 E-value=0.0026 Score=37.86 Aligned_cols=40 Identities=13% Similarity=-0.022 Sum_probs=31.2
Q ss_pred CceeEEEEEe-cCC-----CccccccchhhhhccCCEEEEEEEccCC
Q psy9524 41 SSFLQYQLWD-CPG-----QMDFQDFDAELIFARCGALIFVIDTSMG 81 (81)
Q Consensus 41 ~~~~~l~~~D-~~G-----~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 81 (81)
+..+.+++|| +.| ++++..+.+ .+++++|++++|+|+++|
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r-~~~~naD~vliV~d~~~p 92 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIR-PKVANVDRVIIVETLKMP 92 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEET-TEEESCCEEEEEECSTTT
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhH-HHHHhcCEEEEEEECCCC
Confidence 5556677776 323 788888855 899999999999999865
No 391
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.43 E-value=0.0011 Score=38.51 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||.+.|...
T Consensus 7 ~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 7 YGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHhc
Confidence 599999999998777543
No 392
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0011 Score=36.52 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 16 ~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 16 TGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 489999999999888554
No 393
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.42 E-value=0.001 Score=39.36 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.5
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|++|+|||+|++.+.+..
T Consensus 43 GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 43 GGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp ECTTSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 899999999998886554
No 394
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.39 E-value=0.00036 Score=38.96 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+|+||||+++.|...+
T Consensus 6 ~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 6 EGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEHHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHHH
Confidence 4889999999998775443
No 395
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.38 E-value=0.0014 Score=39.53 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||++++.+.+...
T Consensus 50 ~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 50 LGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp ECCTTSSHHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 49999999999987765544
No 396
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.36 E-value=0.0013 Score=40.54 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||||++.+.+.
T Consensus 175 ~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 175 KGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHhh
Confidence 499999999999888654
No 397
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.35 E-value=0.0051 Score=38.91 Aligned_cols=56 Identities=18% Similarity=0.128 Sum_probs=32.9
Q ss_pred CCCCCCcHhHHHHHHhc-------------------cCCCCceeeecceeeeEEEe------ecCCceeEEEEEecCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQ-------------------KMSPNETLFLEGTNKMTKED------IANSSFLQYQLWDCPGQM 55 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~-------------------~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~D~~G~~ 55 (81)
+|+.++|||.|++.+.. .|.-.. .....|.+++... ..++....+-+.||.|..
T Consensus 73 ~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~-~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDTEG~~ 151 (457)
T 4ido_A 73 AGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRG-GSERETTGIQIWSEIFLINKPDGKKVAVLLMDTQGTF 151 (457)
T ss_dssp EEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCC-SSSCCCCSEEEESSCEEEECTTSCEEEEEEEEECCBT
T ss_pred ECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCC-CCCCcCceEEEecCcccccCCCCCeeEEEEEeccCCC
Confidence 58999999999985531 111111 1112344443321 224667889999999965
Q ss_pred cc
Q psy9524 56 DF 57 (81)
Q Consensus 56 ~~ 57 (81)
..
T Consensus 152 d~ 153 (457)
T 4ido_A 152 DS 153 (457)
T ss_dssp CT
T ss_pred Cc
Confidence 43
No 398
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.35 E-value=0.0017 Score=36.37 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++||||||+.+.|...
T Consensus 6 ~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 6 MGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877443
No 399
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.35 E-value=0.0012 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.312 Sum_probs=11.5
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|.+||||||+.+.|...+
T Consensus 11 ~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 11 NGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp ECCC----CHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4899999999998885443
No 400
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.35 E-value=0.0015 Score=38.69 Aligned_cols=18 Identities=33% Similarity=0.780 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 37 ~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 37 LGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHH
Confidence 389999999999766554
No 401
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.35 E-value=0.0017 Score=37.24 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+.+..
T Consensus 45 ~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 45 LGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp ESCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 3999999999998885543
No 402
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.35 E-value=0.0017 Score=37.54 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 50 ~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 50 VGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp BCSSCSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 499999999999888554
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.34 E-value=0.0014 Score=38.20 Aligned_cols=17 Identities=35% Similarity=0.657 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|.+|+||||+.+.+..
T Consensus 54 ~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 54 VGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp ECSTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 59999999999988854
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.33 E-value=0.0018 Score=35.41 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 6 ~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 6 EGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp ECSTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999888553
No 405
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.32 E-value=0.0017 Score=38.53 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.6
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||+|++.+.+...
T Consensus 55 ~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 55 YGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp ECSSSSSHHHHHHHHHHHTT
T ss_pred ECCCCcCHHHHHHHHHHHhC
Confidence 39999999999998866543
No 406
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.32 E-value=0.0014 Score=39.98 Aligned_cols=15 Identities=27% Similarity=0.463 Sum_probs=13.3
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|+.|+|||||+..+
T Consensus 29 ~G~NGaGKTTll~ai 43 (365)
T 3qf7_A 29 EGPNGAGKSSLFEAI 43 (365)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999998765
No 407
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.32 E-value=0.0015 Score=36.68 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 31 ~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 31 TGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877543
No 408
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.32 E-value=0.0028 Score=33.62 Aligned_cols=19 Identities=16% Similarity=0.169 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++.+.+....
T Consensus 30 ~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 30 YGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp ESSTTSSHHHHHHHHHHSS
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 4999999999999886554
No 409
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.32 E-value=0.0014 Score=45.82 Aligned_cols=22 Identities=18% Similarity=0.326 Sum_probs=19.0
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 422 vG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhCCCCCC
Confidence 6999999999999997776664
No 410
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.31 E-value=0.0019 Score=34.81 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 8 ~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 8 VGARGCGMTTVGRELARA 25 (173)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877543
No 411
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.31 E-value=0.0016 Score=37.37 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|.+|+||||+++.+...+.
T Consensus 32 ~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 32 EGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp ECCTTSCHHHHHHHHHHHHT
T ss_pred EcCCCCCHHHHHHHHHHHHh
Confidence 49999999999988865544
No 412
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.29 E-value=0.0014 Score=39.26 Aligned_cols=18 Identities=44% Similarity=0.700 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 51 ~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 51 YGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999999877554
No 413
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0014 Score=39.25 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+.+.
T Consensus 42 ~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 42 YGPNGTGKKTRCMALLES 59 (354)
T ss_dssp ECSTTSSHHHHHHTHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877663
No 414
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.27 E-value=0.002 Score=35.73 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 21 ~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 21 LGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999777544
No 415
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.27 E-value=0.0017 Score=36.05 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 26 ~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 26 LGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999887543
No 416
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.26 E-value=0.0022 Score=35.10 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=14.1
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+|+||||+.+.|..
T Consensus 9 ~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 9 LGGPGAGKGTQCARIVE 25 (196)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999877744
No 417
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.26 E-value=0.0016 Score=45.67 Aligned_cols=23 Identities=17% Similarity=0.316 Sum_probs=19.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCCc
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPNE 23 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~~ 23 (81)
+|++|+|||||++.+.+.+.+..
T Consensus 450 vG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 450 VGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp EECSSSCHHHHHHHHTTSSCCSE
T ss_pred EecCCCcHHHHHHHhcccccccc
Confidence 59999999999999988777654
No 418
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.25 E-value=0.0022 Score=34.48 Aligned_cols=18 Identities=22% Similarity=0.497 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 6 ~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 6 IGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp ESCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999887553
No 419
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.25 E-value=0.0013 Score=36.10 Aligned_cols=18 Identities=33% Similarity=0.346 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 15 ~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 15 VGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877543
No 420
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.24 E-value=0.0018 Score=38.91 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+.+..
T Consensus 50 ~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 50 YGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CBCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 4999999999998775543
No 421
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.24 E-value=0.0016 Score=44.62 Aligned_cols=17 Identities=18% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+|||||++.+.+
T Consensus 467 iGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 467 CGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHhC
Confidence 59999999999999964
No 422
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.22 E-value=0.0021 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+.+.
T Consensus 52 ~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 52 YGPPGTGKTSTIVALARE 69 (340)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999877554
No 423
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.22 E-value=0.0019 Score=36.35 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=12.9
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|+.|+||||++..+
T Consensus 29 ~G~NgsGKStil~ai 43 (203)
T 3qks_A 29 IGQNGSGKSSLLDAI 43 (203)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred EcCCCCCHHHHHHHH
Confidence 499999999998655
No 424
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.21 E-value=0.0024 Score=35.92 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+||||||+.+.|..
T Consensus 10 ~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 10 TGGIGSGKSTVANAFAD 26 (218)
T ss_dssp ECCTTSCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999988854
No 425
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.20 E-value=0.0014 Score=36.97 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+||||||+.+.|...
T Consensus 11 ~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 11 SGAPASGKGTQCELIKTK 28 (222)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877543
No 426
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.19 E-value=0.002 Score=36.33 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 10 ~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 10 IGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999998877543
No 427
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.19 E-value=0.0018 Score=36.06 Aligned_cols=17 Identities=41% Similarity=0.685 Sum_probs=14.3
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+|+||||+.+.|..
T Consensus 16 ~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 16 EGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHH
Confidence 38999999999887754
No 428
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.17 E-value=0.0024 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=15.6
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+....
T Consensus 56 ~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 56 IGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp ECCTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 3999999999998885544
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.16 E-value=0.0021 Score=36.47 Aligned_cols=18 Identities=33% Similarity=0.399 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 6 ~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 6 FGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp ECCTTSCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877543
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.15 E-value=0.0021 Score=35.12 Aligned_cols=17 Identities=35% Similarity=0.589 Sum_probs=14.3
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+|+||||+.+.|..
T Consensus 8 ~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 8 VGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp ECSTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 48999999999877744
No 431
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.14 E-value=0.0026 Score=36.96 Aligned_cols=18 Identities=28% Similarity=0.390 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 10 ~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 10 TGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHHHH
Confidence 499999999998877543
No 432
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.14 E-value=0.0015 Score=37.01 Aligned_cols=19 Identities=21% Similarity=0.289 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++||||+|..+.|...+
T Consensus 6 ~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 6 LGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp ECSTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 5999999999987775443
No 433
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.14 E-value=0.002 Score=35.44 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 18 ~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 18 IGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877544
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.12 E-value=0.0016 Score=38.06 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=13.1
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||+|+..+.
T Consensus 36 ~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 36 VSPGGAGKSMLALQLA 51 (279)
T ss_dssp EESTTSSHHHHHHHHH
T ss_pred EcCCCCCHHHHHHHHH
Confidence 4899999999986553
No 435
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.10 E-value=0.0018 Score=38.40 Aligned_cols=17 Identities=53% Similarity=0.843 Sum_probs=14.1
Q ss_pred CCCCCcHhHHHHHHhcc
Q psy9524 2 GLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~ 18 (81)
|++|+|||+|++.+.+.
T Consensus 37 G~~G~GKT~L~~~~~~~ 53 (357)
T 2fna_A 37 GLRRTGKSSIIKIGINE 53 (357)
T ss_dssp ESTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 89999999999766444
No 436
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.10 E-value=0.0027 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.405 Sum_probs=15.2
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+...
T Consensus 70 ~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 70 EGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999887554
No 437
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.08 E-value=0.0022 Score=35.75 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.4
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|.+|+||||+.+.|..
T Consensus 15 ~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 15 EGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 38999999999988754
No 438
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.08 E-value=0.0027 Score=38.60 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 58 ~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 58 IGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp TTCCSSSHHHHHHHHHHH
T ss_pred cCcCCCCHHHHHHHHHHH
Confidence 499999999999777543
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.08 E-value=0.0012 Score=42.53 Aligned_cols=19 Identities=21% Similarity=0.578 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|.+|+|||||++.|.+..
T Consensus 375 iG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 375 TGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EESSCHHHHHHHHHHHHHH
T ss_pred ECCCCChHHHHHHHHHHhh
Confidence 5899999999998886554
No 440
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.06 E-value=0.0021 Score=41.20 Aligned_cols=19 Identities=32% Similarity=0.443 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||+|++.+.+..
T Consensus 114 ~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 114 AGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp ESSSSSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHhc
Confidence 4999999999998885544
No 441
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.06 E-value=0.0028 Score=37.77 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+.+.
T Consensus 64 ~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 64 YGPPGTGKTSTILALTKE 81 (353)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999877544
No 442
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.04 E-value=0.0025 Score=39.06 Aligned_cols=16 Identities=25% Similarity=0.520 Sum_probs=13.9
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||+|++.+.
T Consensus 32 ~G~nG~GKttll~ai~ 47 (359)
T 2o5v_A 32 YGENGAGKTNLLEAAY 47 (359)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCChhHHHHHHH
Confidence 5999999999997763
No 443
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.03 E-value=0.0029 Score=44.28 Aligned_cols=22 Identities=18% Similarity=0.372 Sum_probs=18.8
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.+.+-..+.
T Consensus 1065 vG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1065 VGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp ECSSSTTHHHHHHHHTTSSCCS
T ss_pred ECCCCCCHHHHHHHHhcCcCCC
Confidence 5999999999999997766654
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.03 E-value=0.0026 Score=36.64 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++||||||+.+.|...
T Consensus 35 ~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 35 LGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877543
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.03 E-value=0.0024 Score=34.87 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=14.6
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 12 ~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 12 LGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998877543
No 446
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.01 E-value=0.0021 Score=35.45 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=15.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 14 ~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 14 TGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EECTTSCHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHC
Confidence 489999999999888554
No 447
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.00 E-value=0.0029 Score=37.94 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||+|++.+.+..
T Consensus 51 ~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 51 FGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp ESSSSSCHHHHHHHHHHHT
T ss_pred ECCCCccHHHHHHHHHHHc
Confidence 3999999999998887665
No 448
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.00 E-value=0.0027 Score=37.33 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 8 ~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 8 IGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999877553
No 449
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.0028 Score=39.71 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCCCCcHhHHHHHHhccCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~ 20 (81)
|++|+|||+|++.+.+...
T Consensus 213 GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 213 GPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp SCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999999999998866543
No 450
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.98 E-value=0.0032 Score=37.01 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.7
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+....
T Consensus 53 ~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 53 LGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp ESCSSSSHHHHHHHHHHHH
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 4999999999998885543
No 451
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.98 E-value=0.0021 Score=36.11 Aligned_cols=18 Identities=22% Similarity=0.477 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 6 ~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 6 LGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EESTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999999887543
No 452
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.98 E-value=0.0029 Score=36.63 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+||||+.+.+...
T Consensus 15 ~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 15 DGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877543
No 453
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.98 E-value=0.0031 Score=39.42 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 136 ~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 136 YGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp ECSSSSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999887554
No 454
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.97 E-value=0.0022 Score=44.95 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.5
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||||++.|.+-+.+.
T Consensus 1111 VG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1111 VGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp ECSTTSSTTSHHHHHTTSSCCS
T ss_pred ECCCCChHHHHHHHHhcCccCC
Confidence 6999999999999997766554
No 455
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.97 E-value=0.0058 Score=35.28 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=16.5
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||++++.+.....
T Consensus 35 ~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 35 IGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ECCTTSCHHHHHHHHHHTST
T ss_pred ECCCCCcHHHHHHHHHHhcC
Confidence 39999999999988866544
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.97 E-value=0.002 Score=36.84 Aligned_cols=18 Identities=33% Similarity=0.344 Sum_probs=15.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++||||+|..+.|...
T Consensus 35 lGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 35 LGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp ECCTTCCHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 599999999998777544
No 457
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.96 E-value=0.0027 Score=37.35 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=13.9
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
.|++|+|||++++.+.+
T Consensus 73 ~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 73 TGNPGTGKTTVALKMAG 89 (309)
T ss_dssp EECTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 38999999999976643
No 458
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.95 E-value=0.0021 Score=36.63 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=15.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 22 ~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 22 LGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp ECCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999998887544
No 459
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=95.95 E-value=0.0041 Score=37.08 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=16.2
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||++++.+.....
T Consensus 61 ~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 61 SGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp ECSTTSSHHHHHHHHHHHTT
T ss_pred ECcCCCCHHHHHHHHHHHhC
Confidence 39999999999988865543
No 460
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.95 E-value=0.0037 Score=33.66 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+||||||+.+.|...
T Consensus 13 ~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 13 IGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp ESCTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998887543
No 461
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.93 E-value=0.0021 Score=40.90 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=12.7
Q ss_pred CCCCCCcHhHHHHH
Q psy9524 1 MGLRRSGKTSIQKV 14 (81)
Q Consensus 1 lG~~~vGKTsll~~ 14 (81)
+|++|+|||||++.
T Consensus 45 ~G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 45 SGTSGTGKTLFSIQ 58 (525)
T ss_dssp EESTTSSHHHHHHH
T ss_pred EcCCCCCHHHHHHH
Confidence 59999999999976
No 462
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.93 E-value=0.0022 Score=38.98 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.4
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|+|||+|++.+....
T Consensus 137 ~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 137 FGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4899999999987775544
No 463
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=95.92 E-value=0.0022 Score=38.43 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=14.0
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|+.|+|||+|+..+.
T Consensus 30 ~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 30 VGPNGSGKSNIIDAIK 45 (322)
T ss_dssp ECCTTTCSTHHHHHHH
T ss_pred ECCCCCcHHHHHHHHH
Confidence 5999999999997774
No 464
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.91 E-value=0.0032 Score=37.57 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||+|++.+.+.
T Consensus 57 ~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 57 YGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp ECSSSSCHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHH
Confidence 399999999999888654
No 465
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.0033 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=16.2
Q ss_pred CCCCCcHhHHHHHHhccCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~ 20 (81)
|++|+|||.|++.+.+...
T Consensus 222 GPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 222 GPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp SCTTSSHHHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHhC
Confidence 9999999999998866543
No 466
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.89 E-value=0.0027 Score=38.31 Aligned_cols=18 Identities=39% Similarity=0.752 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+.+.
T Consensus 51 ~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 51 LGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999999877554
No 467
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.88 E-value=0.0024 Score=38.03 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=13.8
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+||||++..+..
T Consensus 111 vG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 111 FGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp EESTTSSHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHH
Confidence 58999999999876643
No 468
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.86 E-value=0.0044 Score=40.15 Aligned_cols=22 Identities=14% Similarity=0.339 Sum_probs=17.9
Q ss_pred CCCCCCcHhHHHHHHhccCCCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMSPN 22 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~~~ 22 (81)
+|++|+|||+|++.+.+...+.
T Consensus 66 ~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 66 IGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp ECCTTSSHHHHHHHHHHTSCCS
T ss_pred EeCCCCCHHHHHHHHhccCCcc
Confidence 4999999999999987665443
No 469
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.84 E-value=0.0033 Score=39.04 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CCCCCCcHhHHHHHHh
Q psy9524 1 MGLRRSGKTSIQKVVF 16 (81)
Q Consensus 1 lG~~~vGKTsll~~l~ 16 (81)
+|++|+|||+|++.+.
T Consensus 32 ~G~nG~GKstll~ai~ 47 (430)
T 1w1w_A 32 IGPNGSGKSNMMDAIS 47 (430)
T ss_dssp ECSTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 5999999999987764
No 470
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.83 E-value=0.0031 Score=37.94 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=16.1
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||++++.+.....
T Consensus 76 ~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 76 AGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp EESTTSSHHHHHHHHHHHHC
T ss_pred ECCCCCCHHHHHHHHHHHhc
Confidence 38999999999988865543
No 471
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.80 E-value=0.0043 Score=37.72 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++++.+....
T Consensus 78 ~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 78 IGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHh
Confidence 4999999999998886554
No 472
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.80 E-value=0.0041 Score=39.05 Aligned_cols=20 Identities=25% Similarity=0.406 Sum_probs=16.6
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||++++.+.+...
T Consensus 56 ~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 56 WGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp ECSTTSSHHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 39999999999998866553
No 473
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.79 E-value=0.0044 Score=35.72 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 28 ~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 28 SGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 389999999998877553
No 474
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.77 E-value=0.0038 Score=37.41 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=13.8
Q ss_pred CCCCCCcHhHHHHHHhc
Q psy9524 1 MGLRRSGKTSIQKVVFQ 17 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~ 17 (81)
+|++|+||||++..+..
T Consensus 110 vG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 110 VGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp ECCTTSSHHHHHHHHHH
T ss_pred EcCCCChHHHHHHHHHH
Confidence 58999999999866643
No 475
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.77 E-value=0.0042 Score=37.12 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=14.7
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||.|++.+.+.
T Consensus 158 ~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 158 YGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999998777543
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.77 E-value=0.003 Score=35.62 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.9
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.|...
T Consensus 11 ~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 11 IGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp EECTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 489999999998887543
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.77 E-value=0.0038 Score=38.75 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|.+|+||||+.+.+...
T Consensus 264 ~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 264 VGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp ESCTTSSHHHHHHHHTGG
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 499999999999887544
No 478
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.75 E-value=0.0039 Score=37.60 Aligned_cols=15 Identities=33% Similarity=0.609 Sum_probs=13.1
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|+.|+|||+|+..+
T Consensus 29 ~G~NGsGKS~lleAi 43 (339)
T 3qkt_A 29 IGQNGSGKSSLLDAI 43 (339)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 599999999999754
No 479
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0043 Score=39.03 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.1
Q ss_pred CCCCCcHhHHHHHHhccCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~ 20 (81)
|++|+|||+|++.+.+...
T Consensus 222 GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 222 GPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp SCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHhC
Confidence 9999999999998866543
No 480
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.72 E-value=0.00079 Score=41.32 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=13.3
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|++|+|||+|++.+
T Consensus 66 vG~NGaGKStLl~aI 80 (415)
T 4aby_A 66 TGETGAGKSIIVDAL 80 (415)
T ss_dssp EESHHHHHHHHTHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 589999999999766
No 481
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.71 E-value=0.0052 Score=33.99 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=14.8
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|.+|+||||+.+.|...
T Consensus 8 ~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 8 DGPSASGKSSVARRVAAA 25 (208)
T ss_dssp ECSTTSSHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHh
Confidence 389999999998887543
No 482
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.67 E-value=0.0051 Score=37.22 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||++.+.+....
T Consensus 57 ~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 57 IGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp ECCTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 3999999999998886554
No 483
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0045 Score=38.58 Aligned_cols=19 Identities=26% Similarity=0.392 Sum_probs=16.2
Q ss_pred CCCCCcHhHHHHHHhccCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~ 20 (81)
|++|+|||.|.+.+.+...
T Consensus 189 GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 189 GPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp SCSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHhhC
Confidence 9999999999998866543
No 484
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.67 E-value=0.0041 Score=35.58 Aligned_cols=19 Identities=21% Similarity=0.322 Sum_probs=15.9
Q ss_pred CCCCCcHhHHHHHHhccCC
Q psy9524 2 GLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~~ 20 (81)
|..|+||||+++.|...+.
T Consensus 9 G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 9 GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp ECTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCHHHHHHHHHHHcC
Confidence 7899999999988866553
No 485
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.67 E-value=0.004 Score=36.77 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.0
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
.|++|+|||++++.+.+.
T Consensus 44 ~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 44 FGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp ECCTTCCCHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 399999999999877554
No 486
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.67 E-value=0.0035 Score=39.46 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=15.1
Q ss_pred CCCCCCcHhHHHHHHhcc
Q psy9524 1 MGLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~ 18 (81)
+|++|+|||++++.+...
T Consensus 207 ~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 207 IGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp ESCTTTTTHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHH
Confidence 499999999999877544
No 487
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.66 E-value=0.0049 Score=37.37 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||+|++.+....
T Consensus 123 ~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 123 FGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp ESSTTSSHHHHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 3999999999998886554
No 488
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.0066 Score=40.72 Aligned_cols=20 Identities=30% Similarity=0.390 Sum_probs=16.9
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||+|++.+.+...
T Consensus 244 ~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 244 YGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CSCTTSSHHHHHHHHHHTTT
T ss_pred ECcCCCCHHHHHHHHHHHcC
Confidence 59999999999999876543
No 489
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.66 E-value=0.0041 Score=39.68 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=16.7
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
+|++|+|||+|++.+.+...
T Consensus 70 ~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 70 VGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp ECSSSSSHHHHHHHHHHHTT
T ss_pred ECCCCCCHHHHHHHHHHHhC
Confidence 49999999999998866543
No 490
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.66 E-value=0.0029 Score=36.69 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|..|+||||+++.|...+
T Consensus 31 G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 31 GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CSTTSSHHHHHTTTGGGC
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 899999999998886655
No 491
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.66 E-value=0.005 Score=39.16 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=15.7
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|++|+|||++++.+.+..
T Consensus 84 GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 84 GPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp CSTTSSHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHc
Confidence 999999999998886654
No 492
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.64 E-value=0.0039 Score=37.16 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.3
Q ss_pred CCCCCCcHhHHHHHHhccCC
Q psy9524 1 MGLRRSGKTSIQKVVFQKMS 20 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~~ 20 (81)
.|++|+|||+|++.+.+...
T Consensus 52 ~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 52 EGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp ESCCCHHHHHHHHHHHHHTT
T ss_pred ECCCCCcHHHHHHHHHHHhC
Confidence 49999999999988865543
No 493
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.64 E-value=0.0036 Score=35.49 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=12.2
Q ss_pred CCCCCCcHhHHH-HHH
Q psy9524 1 MGLRRSGKTSIQ-KVV 15 (81)
Q Consensus 1 lG~~~vGKTsll-~~l 15 (81)
+|++|+|||+|+ +++
T Consensus 29 ~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 29 SGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EECTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 489999999996 554
No 494
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.58 E-value=0.0054 Score=37.16 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.5
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
+|++|||||+|...|...+
T Consensus 11 ~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 11 MGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp ECCTTSCHHHHHHHHHHHS
T ss_pred ECCCCCCHHHHHHHHHHHc
Confidence 5999999999987775544
No 495
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.57 E-value=0.004 Score=37.60 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.0
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|++|+|||++++.+....
T Consensus 52 GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 52 NADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999998775543
No 496
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.57 E-value=0.0059 Score=36.66 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=14.4
Q ss_pred CCCCCcHhHHHHHHhcc
Q psy9524 2 GLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~ 18 (81)
|++|+|||++++.+...
T Consensus 45 G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 45 GTRGVGKTSIARLLAKG 61 (373)
T ss_dssp SCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999777543
No 497
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.55 E-value=0.0038 Score=38.76 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.7
Q ss_pred CCCCCCcHhHHHHHH
Q psy9524 1 MGLRRSGKTSIQKVV 15 (81)
Q Consensus 1 lG~~~vGKTsll~~l 15 (81)
+|++|+|||+|++.+
T Consensus 184 ~G~sGsGKTTLl~~l 198 (400)
T 3lda_A 184 FGEFRTGKSQLCHTL 198 (400)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred EcCCCCChHHHHHHH
Confidence 489999999998644
No 498
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.54 E-value=0.0057 Score=37.14 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=15.9
Q ss_pred CCCCCCcHhHHHHHHhccC
Q psy9524 1 MGLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 1 lG~~~vGKTsll~~l~~~~ 19 (81)
.|++|+|||+|++.+.+..
T Consensus 90 ~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 90 YGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp ECSTTSCHHHHHHHHHHHH
T ss_pred ECCCCCcHHHHHHHHHHHh
Confidence 3999999999998886554
No 499
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.53 E-value=0.0068 Score=34.22 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=14.9
Q ss_pred CCCCCcHhHHHHHHhccC
Q psy9524 2 GLRRSGKTSIQKVVFQKM 19 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~~ 19 (81)
|..||||||+++.|...+
T Consensus 9 G~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 9 GPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp CCTTSCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHH
Confidence 889999999988775554
No 500
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.52 E-value=0.0059 Score=35.93 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred CCCCCcHhHHHHHHhcc
Q psy9524 2 GLRRSGKTSIQKVVFQK 18 (81)
Q Consensus 2 G~~~vGKTsll~~l~~~ 18 (81)
|++|+|||++++.+...
T Consensus 53 G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 53 GPPGVGKTTAALALARE 69 (327)
T ss_dssp SCTTSSHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHH
Confidence 99999999999777544
Done!