RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9524
(81 letters)
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 100 bits (250), Expect = 1e-28
Identities = 58/79 (73%), Positives = 67/79 (84%), Gaps = 2/79 (2%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MGLRRSGK+SIQKVVF KMSPNETLFLE TNK+ K+DI+NSSF+ +Q+WD PGQMDF D
Sbjct: 26 MGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP 85
Query: 60 -FDAELIFARCGALIFVID 77
FD E+IF GALI+VID
Sbjct: 86 TFDYEMIFRGTGALIYVID 104
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 331
Score = 100 bits (249), Expect = 2e-27
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG+RR GK+SI KVVF M P +TL+LE T+ + E S+ + + + PGQ+++ +
Sbjct: 5 MGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEP 62
Query: 60 -FDAELIFARCGALIFVIDTSM 80
+D+E +F GAL++VID+
Sbjct: 63 SYDSERLFKSVGALVYVIDSQD 84
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P,
MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 95.1 bits (236), Expect = 1e-25
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD- 59
MG SGK+S++ ++F S +T L T + + + LWDC GQ F +
Sbjct: 9 MGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN 68
Query: 60 ---FDAELIFARCGALIFVIDTS 79
+ IF LI V D
Sbjct: 69 YFTKQKDHIFQMVQVLIHVFDVE 91
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 41.3 bits (97), Expect = 5e-06
Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLE---GTNKMTKEDIANSSFLQYQLWDCPGQMDF 57
+GL SGKT + F ++ + + + + + N+ L D PG
Sbjct: 13 VGLCDSGKTLL----FVRLLTGQYRDTQTSITDSSAIYK-VNNNRGNSLTLIDLPGHESL 67
Query: 58 QDFDAELIFARCGALIFVIDTS 79
+ + + A++FV+D++
Sbjct: 68 RFQLLDRFKSSARAVVFVVDSA 89
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 36.6 bits (85), Expect = 2e-04
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 12/90 (13%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIA-----------NSSFLQYQLW 49
G SGKT+ K ++ K+ + + + ++ L+
Sbjct: 20 YGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLY 79
Query: 50 DCPGQMDFQDFDAELIFARCGALIFVIDTS 79
PGQ+ + + +LI ++FV D++
Sbjct: 80 TVPGQVFY-NASRKLILRGVDGIVFVADSA 108
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 31.7 bits (72), Expect = 0.013
Identities = 16/83 (19%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNK-MTKEDIANSSFLQYQLWDCPGQMDFQD 59
G + SGKTS+ ++ + + + ++ D S L D PG + +
Sbjct: 18 AGPQNSGKTSL----LTLLTTDSVRPTVVSQEPLSAADYDGSGV---TLVDFPGHVKLRY 70
Query: 60 FDAELI---FARCGALIFVIDTS 79
++ + LIF++D++
Sbjct: 71 KLSDYLKTRAKFVKGLIFMVDST 93
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 31.6 bits (72), Expect = 0.013
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSF--LQYQLWDCPGQ---- 54
G + SGKTS+ ++ + +++E ++ + + L D PG
Sbjct: 54 AGPQNSGKTSL----LTLLTTDSVR----PTVVSQEPLSAADYDGSGVTLVDFPGHVKLR 105
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
D+ + LIF++D++
Sbjct: 106 YKLSDY-LKTRAKFVKGLIFMVDST 129
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.19
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 4 RRSGKTSIQKVVFQKMSPNETLFLEGTNKMT---KEDIANSSFLQYQLWDCPGQMDFQDF 60
R +++ + ++ P + + ++G + K +A L Y++ MDF+ F
Sbjct: 133 RLQPYLKLRQAL-LELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCK---MDFKIF 185
Query: 61 --------DAELIFARCGALIFVID 77
E + L++ ID
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQID 210
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 28.4 bits (64), Expect = 0.19
Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNE------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54
+GL +GKT+I K+ E T+ G N T E N F +WD GQ
Sbjct: 35 VGLDAAGKTTILY----KLKLGEIVTTIPTI---GFNVETVE-YKNICF---TVWDVGGQ 83
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
+ F LIFV+D++
Sbjct: 84 DKIRPL-WRHYFQNTQGLIFVVDSN 107
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 27.2 bits (61), Expect = 0.47
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 14/84 (16%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLE-----GTNKMTKEDIANSSFLQYQLWDCPGQM 55
+GL SGKT+I K+ P+ G + + K ++ SF ++D GQ
Sbjct: 27 LGLDNSGKTTIIN----KLKPSNAQSQNILPTIGFS-IEKFKSSSLSF---TVFDMSGQG 78
Query: 56 DFQDFDAELIFARCGALIFVIDTS 79
+++ E + A+IFVID+S
Sbjct: 79 RYRNL-WEHYYKEGQAIIFVIDSS 101
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 27.1 bits (61), Expect = 0.47
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 15/84 (17%)
Query: 1 MGLRRSGKTSIQKV-----VFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQM 55
+GL+ SGKT+ V + M P T+ G N M K N + +LWD GQ
Sbjct: 28 VGLQYSGKTTFVNVIASGQFNEDMIP--TV---GFN-MRKITKGNVTI---KLWDIGGQP 78
Query: 56 DFQDFDAELIFARCGALIFVIDTS 79
F+ E A+++++D +
Sbjct: 79 RFRSM-WERYCRGVSAIVYMVDAA 101
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding,
protein binding; HET: GDP; 3.17A {Saccharomyces
cerevisiae} SCOP: c.37.1.8
Length = 183
Score = 26.5 bits (59), Expect = 0.82
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNE------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54
+GL +GKT+I ++ E T+ G N + N +WD GQ
Sbjct: 24 LGLDGAGKTTILY----RLQIGEVVTTKPTI---GFN-VETLSYKNLKL---NVWDLGGQ 72
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
+ + +A A+IFV+D++
Sbjct: 73 TSIRPY-WRCYYADTAAVIFVVDST 96
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding,
transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP:
c.37.1.8
Length = 187
Score = 25.7 bits (57), Expect = 1.4
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDI--ANSSFLQYQLWDCPGQMDFQ 58
+GL +GKT+I + S NE + T E+I N+ F +WD GQ +
Sbjct: 22 VGLDNAGKTTILY----QFSMNEVVHTSPTIGSNVEEIVINNTRF---LMWDIGGQESLR 74
Query: 59 DFDAELIFARCGALIFVIDTS 79
+ +I V+D++
Sbjct: 75 SSW-NTYYTNTEFVIVVVDST 94
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 25.7 bits (57), Expect = 1.8
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 6/79 (7%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+GL +GKT+I K F + G N + + +WD GQ + +
Sbjct: 24 LGLDNAGKTTILKK-FNGEDVDTISPTLGFN-IKTLEHRGFKL---NIWDVGGQKSLRSY 78
Query: 61 DAELIFARCGALIFVIDTS 79
F LI+V+D++
Sbjct: 79 -WRNYFESTDGLIWVVDSA 96
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 25.6 bits (57), Expect = 1.8
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNE------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54
+GL +GKT+I K+ E T+ G N + + N SF +WD GQ
Sbjct: 6 VGLDAAGKTTI----LYKLKLGEIVTTIPTI---GFN-VETVEYKNISF---TVWDVGGQ 54
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
+ F LIFV+D++
Sbjct: 55 DKIRPLW-RHYFQNTQGLIFVVDSN 78
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 25.3 bits (56), Expect = 2.0
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNE------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54
+GL +GKTSI ++ + T+ G N + N SF ++WD GQ
Sbjct: 28 LGLDNAGKTSILY----RLHLGDVVTTVPTV---GVN-LETLQYKNISF---EVWDLGGQ 76
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
+ + F+ A+I+V+D++
Sbjct: 77 TGVRPY-WRCYFSDTDAVIYVVDST 100
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 25.6 bits (57), Expect = 2.0
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 54 QMDFQDFDAELIFARCGALIF 74
++DF+ + ++I +
Sbjct: 180 EIDFEQLEKDIIDNNVKIYLL 200
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 25.5 bits (57), Expect = 2.2
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 54 QMDFQDFDAELIFARCGALIF 74
Q+DF+ + +++ +
Sbjct: 150 QIDFEQLENDIVENDVKLYLL 170
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 25.2 bits (56), Expect = 2.5
Identities = 3/21 (14%), Positives = 10/21 (47%)
Query: 54 QMDFQDFDAELIFARCGALIF 74
+++ D + +L ++F
Sbjct: 146 SVNWADLEEKLATPSVRMMVF 166
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 25.2 bits (56), Expect = 2.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 54 QMDFQDFDAELIFARCGALIF 74
+DFQ + AL+F
Sbjct: 150 TIDFQKLEKLSKDKNNKALLF 170
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 25.2 bits (56), Expect = 2.9
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 54 QMDFQDFDAELIFARCGALIF 74
D +A L C ++
Sbjct: 148 FCDMGKLEAVLAKPECKIMLL 168
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 25.0 bits (54), Expect = 3.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 24 TLFLEGTNKMTKEDIANSSFLQYQ--LWDCPGQMDFQD 59
+L+ E +++ KE + + L D PG +DF
Sbjct: 76 SLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSS 113
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex
without magnesium, ARF family, RAS superfamily,
G-domain, signaling protein; HET: MES GDP; 1.70A {Mus
musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 24.5 bits (54), Expect = 3.8
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNE------TLFLEGTNKMTKEDIANSSFLQYQLWDCPGQ 54
+GL +GKT++ K +++ + T G N + + +WD GQ
Sbjct: 22 LGLDNAGKTTLLK----QLASEDISHITPTQ---GFNIKSVQ-SQGFKL---NVWDIGGQ 70
Query: 55 MDFQDFDAELIFARCGALIFVIDTS 79
+ + F LI+VID++
Sbjct: 71 RKIRPY-WRSYFENTDILIYVIDSA 94
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 24.5 bits (54), Expect = 3.9
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 10/81 (12%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIA--NSSFLQYQLWDCPGQMDFQ 58
+GL +GKT+I + S NE + T E+I N+ F +WD GQ +
Sbjct: 27 VGLDNAGKTTILY----QFSMNEVVHTSPTIGSNVEEIVINNTRF---LMWDIGGQESLR 79
Query: 59 DFDAELIFARCGALIFVIDTS 79
+ +I V+D++
Sbjct: 80 SSW-NTYYTNTEFVIVVVDST 99
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel,
glycosyltransferase, transferase; HET: NDG; 1.85A
{Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A*
2zuw_A*
Length = 759
Score = 24.9 bits (54), Expect = 4.0
Identities = 8/14 (57%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Query: 42 SFLQYQLWDCPGQM 55
SFL Y +WD P +M
Sbjct: 152 SFLAYIIWD-PVEM 164
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 24.4 bits (54), Expect = 4.2
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 14/83 (16%)
Query: 1 MGLRRSGKTSIQKVV----FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD 56
+GL +GKT+I + P T+ G N + N F Q+WD G
Sbjct: 13 LGLDGAGKTTILYRLQVGEVVTTIP--TI---GFN-VETVTYKNLKF---QVWDLGGLTS 63
Query: 57 FQDFDAELIFARCGALIFVIDTS 79
+ + ++ A+I+V+D+
Sbjct: 64 IRPY-WRCYYSNTDAVIYVVDSC 85
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus
solfataricus} SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 24.3 bits (52), Expect = 5.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 2 GLRRSGKTSIQKVVFQKM 19
GLRR+GK+SI K+ ++
Sbjct: 37 GLRRTGKSSIIKIGINEL 54
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 24.0 bits (51), Expect = 6.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 18 KMSPNETLFLEGTNKMTKEDIANSSFLQYQ 47
+++ N L L + E++ SF +
Sbjct: 515 RLTYNMILNLLRIEALRVEEMIKYSFSENA 544
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 23.8 bits (52), Expect = 8.2
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 1 MGLRRSGKTSIQKVV----FQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMD 56
+GL +GKT++ ++ + P TL + IA +F +D G +
Sbjct: 31 LGLDNAGKTTLLHMLKDDRLGQHVP--TL---HPT-SEELTIAGMTF---TTFDLGGHIQ 81
Query: 57 FQDFDAELIFARCGALIFVIDTS 79
+ + ++F++D +
Sbjct: 82 ARRV-WKNYLPAINGIVFLVDCA 103
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 23.9 bits (51), Expect = 8.2
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 2 GLRRSGKTSIQKVVFQKM 19
G+RR GK+S+ + +
Sbjct: 38 GIRRVGKSSLLRAFLNER 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.407
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,180,344
Number of extensions: 54045
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 30
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.0 bits)