RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9524
(81 letters)
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 33.6 bits (76), Expect = 9e-04
Identities = 17/80 (21%), Positives = 29/80 (36%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKT + + Q + P G + M K N ++ Q+WD GQ F+
Sbjct: 11 IGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSI 70
Query: 61 DAELIFARCGALIFVIDTSM 80
+ ++ T
Sbjct: 71 TQSYYRSANALILTYDITCE 90
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 32.9 bits (74), Expect = 0.002
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKTS + G + K N ++ Q+WD GQ ++
Sbjct: 11 IGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTI 70
Query: 61 DAELIFARCGALIFVIDTSM 80
+ I + D +
Sbjct: 71 -TTAYYRGAMGFILMYDITN 89
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 32.4 bits (73), Expect = 0.002
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKT + + + + G + + + ++ Q+WD GQ F+
Sbjct: 12 IGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTI 71
Query: 61 DAELIFARCGALIFVIDTSM 80
+ ++ V D +
Sbjct: 72 -TTAYYRGAMGIMLVYDITN 90
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 32.5 bits (73), Expect = 0.003
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+S+ E G + K + + + +WD GQ F+
Sbjct: 13 IGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL 72
Query: 61 DAELIFARCGALIFVID 77
G I V D
Sbjct: 73 TPSYYRGAQGV-ILVYD 88
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 31.4 bits (70), Expect = 0.005
Identities = 15/75 (20%), Positives = 30/75 (40%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G +GK+ + +K +++ G +K +++ Q+WD GQ F+
Sbjct: 11 IGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 70
Query: 61 DAELIFARCGALIFV 75
GAL+
Sbjct: 71 TRSYYRGAAGALLVY 85
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 31.4 bits (70), Expect = 0.006
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+ + N+ + G + K + ++ Q+WD GQ F+
Sbjct: 12 IGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 71
Query: 61 DAELIFARCGALIFVIDTSM 80
+ +I V D +
Sbjct: 72 -TSSYYRGSHGIIIVYDVTD 90
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 30.6 bits (68), Expect = 0.009
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 1 MGLRRSGKTSI-QKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQD 59
+G GKT + + + G + K + ++ Q+WD GQ F+
Sbjct: 12 VGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS 71
Query: 60 FDAELIFARCGALIFVIDTSM 80
L+ T+
Sbjct: 72 VTHAYYRDAHALLLLYDVTNK 92
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 29.8 bits (66), Expect = 0.021
Identities = 16/80 (20%), Positives = 28/80 (35%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+ + +K + G T+ + ++ Q+WD GQ F+
Sbjct: 10 IGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 69
Query: 61 DAELIFARCGALIFVIDTSM 80
GAL+ T
Sbjct: 70 TRSYYRGAAGALMVYDITRR 89
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.4 bits (65), Expect = 0.027
Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+ + + + G + K N ++ Q+WD GQ F+
Sbjct: 8 IGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI 67
Query: 61 DAELIFARCGALIFVID 77
+ +I V D
Sbjct: 68 -TTAYYRGAMGIILVYD 83
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.077
Identities = 17/75 (22%), Positives = 30/75 (40%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKT + P+ T G + + + ++ QLWD GQ F+
Sbjct: 8 IGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS 67
Query: 61 DAELIFARCGALIFV 75
+ + A++FV
Sbjct: 68 MVQHYYRNVHAVVFV 82
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.1 bits (59), Expect = 0.16
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+++ + E+ G T+ + ++ Q+WD GQ ++
Sbjct: 10 IGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRI 69
Query: 61 DAELIFARCGALIF 74
+ GAL+
Sbjct: 70 TSAYYRGAVGALLV 83
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 27.3 bits (59), Expect = 0.18
Identities = 15/75 (20%), Positives = 25/75 (33%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+SI G +T+ N +++++WD GQ F
Sbjct: 9 LGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASL 68
Query: 61 DAELIFARCGALIFV 75
AL+
Sbjct: 69 APMYYRNAQAALVVY 83
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 26.8 bits (58), Expect = 0.26
Identities = 15/73 (20%), Positives = 28/73 (38%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GKTS+ + ++ + G + +TK+ + +WD GQ F
Sbjct: 9 LGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHAL 68
Query: 61 DAELIFARCGALI 73
GA++
Sbjct: 69 GPIYYRDSNGAIL 81
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 24.9 bits (53), Expect = 1.3
Identities = 17/74 (22%), Positives = 28/74 (37%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G + GKTS+ N G + ++K ++ QLWD GQ F+
Sbjct: 6 LGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSL 65
Query: 61 DAELIFARCGALIF 74
I A++
Sbjct: 66 IPSYIRDSAAAVVV 79
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 24.6 bits (52), Expect = 1.3
Identities = 12/80 (15%), Positives = 29/80 (36%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+S+ + G +T+ + + +++++WD GQ +
Sbjct: 12 LGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSL 71
Query: 61 DAELIFARCGALIFVIDTSM 80
A++ T+
Sbjct: 72 APMYYRGAQAAIVVYDITNE 91
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 23.1 bits (48), Expect = 4.7
Identities = 13/80 (16%), Positives = 29/80 (36%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+S+ + + + + G + + ++ N ++ LWD GQ +F
Sbjct: 8 VGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI 67
Query: 61 DAELIFARCGALIFVIDTSM 80
++ T
Sbjct: 68 TKAYYRGAQACVLVFSTTDR 87
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005)
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 22.4 bits (48), Expect = 5.9
Identities = 3/29 (10%), Positives = 8/29 (27%)
Query: 13 KVVFQKMSPNETLFLEGTNKMTKEDIANS 41
++ E L + + +I
Sbjct: 45 LEAMPQLKKGEILEVVSDCPQSINNIPLD 73
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 22.5 bits (47), Expect = 8.6
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 52 PGQMDFQDFDAELIFARCGALIFV 75
P +D + E R ++FV
Sbjct: 363 PSALDNRPLRFEEFLERVSQVVFV 386
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 22.1 bits (46), Expect = 9.5
Identities = 14/74 (18%), Positives = 24/74 (32%)
Query: 1 MGLRRSGKTSIQKVVFQKMSPNETLFLEGTNKMTKEDIANSSFLQYQLWDCPGQMDFQDF 60
+G GK+ + K G + + ++ Q+WD GQ F+
Sbjct: 9 IGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSI 68
Query: 61 DAELIFARCGALIF 74
GAL+
Sbjct: 69 TRSYYRGAAGALLV 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.407
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 286,372
Number of extensions: 10602
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 22
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.5 bits)