BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9526
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9GLP1|FA5_PIG Coagulation factor V OS=Sus scrofa GN=F5 PE=2 SV=1
Length = 2258
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 13 SPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMSV 72
SP ++ SP++S SP V SP +S SP +S SP + SP +S
Sbjct: 1170 SPDLNQTSLSPELSQTTLSPDPGHVTLSPDLSQTTLSPDLSHTTLSPDLGHTTLSPDLSH 1229
Query: 73 VLASPPMSVVLASPPMS 89
SP +S SP +S
Sbjct: 1230 TTLSPDLSQTTLSPDLS 1246
>sp|P0DI83|NARR_HUMAN Ras-related protein Rab-34, isoform NARR OS=Homo sapiens GN=RAB34
PE=1 SV=1
Length = 198
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%)
Query: 13 SPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMSV 72
SP V+ +P+ V+L SP V+++SP +VV+ASP + SP VV+ +P V
Sbjct: 60 SPRPRVIFGTPRARVILGSPRPRVIVSSPWPAVVVASPRPRTPVGSPWPRVVVGTPRPRV 119
Query: 73 VLASPPMSVVLASP 86
++ SP V A P
Sbjct: 120 IVGSPRARVADADP 133
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 9 LILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASP 68
+I +P V+L SP+ V+++SP +VV+ASP + SP VV+ +P V++ SP
Sbjct: 65 VIFGTPRARVILGSPRPRVIVSSPWPAVVVASPRPRTPVGSPWPRVVVGTPRPRVIVGSP 124
Query: 69 PMSVVLASP 77
V A P
Sbjct: 125 RARVADADP 133
>sp|A8MUU9|YV023_HUMAN Putative uncharacterized protein ENSP00000383309 OS=Homo sapiens
PE=5 SV=3
Length = 505
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 42/77 (54%)
Query: 10 ILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPP 69
+ +PP + + +P + + +PP + + SPP + + +PP + + SPP + + +PP
Sbjct: 273 LTRTPPTASLTRTPPTASLTRTPPRASLTRSPPRASLTRTPPTASLTRSPPTASLTRTPP 332
Query: 70 MSVVLASPPMSVVLASP 86
+ + SPP + + +P
Sbjct: 333 RASLTRSPPRASLTRTP 349
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 31 SPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMSVVLASPPMSVVLASPPM 88
+PP + + +PP + + SPP + + +PP + + SPP + + +PP + + SPP
Sbjct: 285 TPPTASLTRTPPRASLTRSPPRASLTRTPPTASLTRSPPTASLTRTPPRASLTRSPPR 342
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 43/83 (51%)
Query: 6 PMSLILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVL 65
P + + +PP + + SP + + PP + + SPP + + +PP + + SP + +
Sbjct: 386 PRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSPPRASLTRTPPRASLTRSPSTASLT 445
Query: 66 ASPPMSVVLASPPMSVVLASPPM 88
+PP + + +PP + + +PP
Sbjct: 446 RTPPGTWLRRTPPRTSLTRTPPT 468
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 6 PMSLILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVL 65
P + + +PP + + +P + + SPP + + +PP + + SPP + + +PP + +
Sbjct: 278 PTASLTRTPPTASLTRTPPRASLTRSPPRASLTRTPPTASLTRSPPTASLTRTPPRASLT 337
Query: 66 ASPPMSVVLASP 77
SPP + + +P
Sbjct: 338 RSPPRASLTRTP 349
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%)
Query: 10 ILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPP 69
+ +PP + + +P + + SPP + + PP + + SPP + + +PP + + SP
Sbjct: 381 LTRTPPRASLTRTPPRASLTRSPPTASLTRMPPTASLTRSPPRASLTRTPPRASLTRSPS 440
Query: 70 MSVVLASPPMSVVLASPPMS 89
+ + +PP + + +PP +
Sbjct: 441 TASLTRTPPGTWLRRTPPRT 460
>sp|P12259|FA5_HUMAN Coagulation factor V OS=Homo sapiens GN=F5 PE=1 SV=4
Length = 2224
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 13 SPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMSV 72
SP +S SP++ SP + + SP +S SP +S S +S SP +S
Sbjct: 1205 SPDLSHTTLSPELIQRNLSPALGQMPISPDLSHTTLSPDLSHTTLSLDLSQTNLSPELSQ 1264
Query: 73 VLASP-----PMSVVLASPPMSVNYSQNQMS 98
SP P+S L+ +S+++SQ +S
Sbjct: 1265 TNLSPALGQMPLSPDLSHTTLSLDFSQTNLS 1295
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 7 MSLILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLA 66
+SL L+ +S L+ +S L P+S L+ +S+ + +S L+ +S L+
Sbjct: 1249 LSLDLSQTNLSPELSQTNLSPALGQMPLSPDLSHTTLSLDFSQTNLSPELSHMTLSPELS 1308
Query: 67 SPPMSVVLASPPMSVVLASPPMSVNYSQNQMS 98
+S L P+S L+ +S+++SQ +S
Sbjct: 1309 QTNLSPALGQMPISPDLSHTTLSLDFSQTNLS 1340
Score = 29.6 bits (65), Expect = 5.8, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 5 LPMSLILASPPMSVVLA----SPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPP 60
+P+S L+ +S+ + SP++S + SP +S SP + + SP +S S
Sbjct: 1274 MPLSPDLSHTTLSLDFSQTNLSPELSHMTLSPELSQTNLSPALGQMPISPDLSHTTLSLD 1333
Query: 61 ISVVLASPPMSVVLASPPMSVVLASP-----PMSVNYSQNQMS 98
S SP +S SP + + SP +S++ SQ +S
Sbjct: 1334 FSQTNLSPELSQTNLSPALGQMPLSPDPSHTTLSLDLSQTNLS 1376
>sp|Q6PD31|TRAK1_MOUSE Trafficking kinesin-binding protein 1 OS=Mus musculus GN=Trak1 PE=1
SV=1
Length = 939
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 22 SPQMSVVLASPPMSVVLASPPMSVVLASPP-MSVVLASPPISVVLASPPMSVVLASPPMS 80
+P+M+V+ ++PP S PM ASPP SPP + LAS P S +L
Sbjct: 769 TPRMAVIPSTPPNS------PMQTPSASPPSFEFKCTSPPYNNFLASKPASSILRE---- 818
Query: 81 VVLASPPMSVNYSQNQMSAKAIALVRADQKRR 112
V P+ + SQ +S + LV D+ RR
Sbjct: 819 -VREKRPVRSSESQTDVSVSNLNLV--DKVRR 847
>sp|Q9UKF5|ADA29_HUMAN Disintegrin and metalloproteinase domain-containing protein 29
OS=Homo sapiens GN=ADAM29 PE=1 SV=3
Length = 820
Score = 32.3 bits (72), Expect = 0.90, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 12 ASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMS 71
+ PP++ + PQ+ + PP++ + P + + PP+ + P ++ + PP++
Sbjct: 741 SQPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPSQSHPQLTPSQSQPPVT 800
Query: 72 VVLASPPMSVVLASPPMS 89
P + + PP++
Sbjct: 801 PSQRQPQLMPSQSQPPVT 818
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 14 PPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLASPPMSVV 73
PP S P S PP++ + P + + PP++ + P + + PP+
Sbjct: 729 PPQSQPWVMPSQS----QPPVTPSQSHPQVMPSQSQPPVTPSQSQPRVMPSQSQPPVMPS 784
Query: 74 LASPPMSVVLASPPMSVNYSQNQM 97
+ P ++ + PP++ + Q Q+
Sbjct: 785 QSHPQLTPSQSQPPVTPSQRQPQL 808
>sp|O88783|FA5_MOUSE Coagulation factor V OS=Mus musculus GN=F5 PE=1 SV=1
Length = 2183
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 7 MSLILASPPMSVVLASPQMSVVLASPPMSVVLASPPMSVVLASPPMSVVLASPPISVVLA 66
+SL SP + + P + +L SP + +SP + V SP + +SP + V
Sbjct: 1180 LSLFTISPELDQTIIYPDLDQLLLSPEDNQKTSSPDLGQVPLSPDDNQKTSSPDLGQVSL 1239
Query: 67 SPPMSVVLASPPMSVVLASPPMSVNYSQNQMS 98
SP + +SP + V P+S++ +Q S
Sbjct: 1240 SPDDNQKTSSPDLGQV----PLSLDDNQKTTS 1267
>sp|Q9UPV9|TRAK1_HUMAN Trafficking kinesin-binding protein 1 OS=Homo sapiens GN=TRAK1 PE=1
SV=1
Length = 953
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Query: 22 SPQMSVVLASPPMSVVLASPPMSVVLASPP-MSVVLASPPISVVLASPPMSVVL 74
+P+M+V+ ++PP S PM +SPP SPP LAS P S +L
Sbjct: 772 TPKMAVIPSTPPNS------PMQTPTSSPPSFEFKCTSPPYDNFLASKPASSIL 819
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.125 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,051,167
Number of Sequences: 539616
Number of extensions: 1059904
Number of successful extensions: 8669
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 179
Number of HSP's that attempted gapping in prelim test: 6397
Number of HSP's gapped (non-prelim): 1189
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)