Query psy9526
Match_columns 113
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 21:52:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9526.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9526hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tx4_A P50-rhogap; complex (GT 4.5 1.4E+02 0.0049 19.7 -0.4 15 92-106 149-163 (198)
2 3msx_B RHO GTPase-activating p 4.4 1.5E+02 0.005 19.5 -0.4 15 91-105 148-162 (201)
3 2osa_A N-chimaerin; RHO-GAP, G 4.3 1.5E+02 0.0052 19.6 -0.4 14 93-106 152-165 (202)
4 2ovj_A Mgcracgap, RAC GTPase-a 4.2 2.3E+02 0.0079 18.8 0.5 14 93-106 142-155 (201)
5 2ee4_A RHO GTPase activating p 4.0 1.7E+02 0.0057 19.5 -0.4 14 92-105 152-165 (209)
6 3byi_A RHO GTPase activating p 3.7 1.8E+02 0.0062 19.4 -0.4 14 92-105 161-174 (214)
7 3iug_A RHO/CDC42/RAC GTPase-ac 3.6 1.9E+02 0.0065 19.6 -0.4 15 91-105 162-176 (229)
8 1pbw_A Rhogap domain, phosphat 3.5 1.9E+02 0.0066 19.4 -0.4 14 93-106 152-165 (216)
9 3kuq_A RHO GTPase-activating p 3.5 2E+02 0.0068 19.6 -0.4 15 91-105 159-173 (228)
10 2le3_A Carnitine O-palmitoyltr 3.4 5.4E+02 0.019 15.0 1.6 32 80-111 11-42 (42)
No 1
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=4.52 E-value=1.4e+02 Score=19.70 Aligned_cols=15 Identities=33% Similarity=0.425 Sum_probs=11.4
Q ss_pred ccccchhhhhhhhhh
Q psy9526 92 YSQNQMSAKAIALVR 106 (113)
Q Consensus 92 ysqnqmsakaialvr 106 (113)
-.+|+|+++.+|.+=
T Consensus 149 ~~~NkM~~~nLa~vf 163 (198)
T 1tx4_A 149 SDQNKMTNTNLAVVF 163 (198)
T ss_dssp HHHHCCCHHHHHHHH
T ss_pred cCCCCCCHHHHHhhh
Confidence 357899999888753
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=4.43 E-value=1.5e+02 Score=19.54 Aligned_cols=15 Identities=40% Similarity=0.441 Sum_probs=11.2
Q ss_pred eccccchhhhhhhhh
Q psy9526 91 NYSQNQMSAKAIALV 105 (113)
Q Consensus 91 nysqnqmsakaialv 105 (113)
+-+.|+|+++.+|.+
T Consensus 148 ~~~~NkM~~~nLa~v 162 (201)
T 3msx_B 148 HSSSNQMTAFNLAVC 162 (201)
T ss_dssp THHHHCCCHHHHHHH
T ss_pred ccccCCCChhhhhhh
Confidence 345789999888865
No 3
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=4.32 E-value=1.5e+02 Score=19.63 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=11.0
Q ss_pred cccchhhhhhhhhh
Q psy9526 93 SQNQMSAKAIALVR 106 (113)
Q Consensus 93 sqnqmsakaialvr 106 (113)
..|+|+++.+|.+=
T Consensus 152 ~~NkM~~~NLa~vf 165 (202)
T 2osa_A 152 KENLMNAENLGIVF 165 (202)
T ss_dssp HHHCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 57899999888753
No 4
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=4.23 E-value=2.3e+02 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=11.3
Q ss_pred cccchhhhhhhhhh
Q psy9526 93 SQNQMSAKAIALVR 106 (113)
Q Consensus 93 sqnqmsakaialvr 106 (113)
+.|+|+++.+|.+=
T Consensus 142 ~~NkM~~~NLa~vf 155 (201)
T 2ovj_A 142 PHTKMDVANLAKVF 155 (201)
T ss_dssp TTSCCCHHHHHHHH
T ss_pred cccCCCHHHHHHHh
Confidence 57999999888753
No 5
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=3.98 E-value=1.7e+02 Score=19.51 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=11.0
Q ss_pred ccccchhhhhhhhh
Q psy9526 92 YSQNQMSAKAIALV 105 (113)
Q Consensus 92 ysqnqmsakaialv 105 (113)
-..|+|+++.+|.+
T Consensus 152 ~~~NkM~~~NLaiv 165 (209)
T 2ee4_A 152 HKINLMTADNLSIC 165 (209)
T ss_dssp HHHHCCCHHHHHHH
T ss_pred ccccCCCHHHHHHH
Confidence 35689999988875
No 6
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=3.73 E-value=1.8e+02 Score=19.41 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=11.0
Q ss_pred ccccchhhhhhhhh
Q psy9526 92 YSQNQMSAKAIALV 105 (113)
Q Consensus 92 ysqnqmsakaialv 105 (113)
-..|+|+++.+|.+
T Consensus 161 s~~NkM~~~NLa~v 174 (214)
T 3byi_A 161 ASKNLMSTQSLGIV 174 (214)
T ss_dssp HHHHCCCHHHHHHH
T ss_pred ccCCCCCHHHhHHH
Confidence 35789999988865
No 7
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=3.61 E-value=1.9e+02 Score=19.60 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=11.4
Q ss_pred eccccchhhhhhhhh
Q psy9526 91 NYSQNQMSAKAIALV 105 (113)
Q Consensus 91 nysqnqmsakaialv 105 (113)
|-..|+|+++.+|.+
T Consensus 162 ~s~~NkM~~~NLAiv 176 (229)
T 3iug_A 162 YCSITNMHAKNLAIV 176 (229)
T ss_dssp THHHHCCCHHHHHHH
T ss_pred ccCccCCChHHHHHH
Confidence 346789999888865
No 8
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=3.55 E-value=1.9e+02 Score=19.45 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=10.9
Q ss_pred cccchhhhhhhhhh
Q psy9526 93 SQNQMSAKAIALVR 106 (113)
Q Consensus 93 sqnqmsakaialvr 106 (113)
.+|+|+++.+|.|-
T Consensus 152 ~~NkM~~~NLAivf 165 (216)
T 1pbw_A 152 SKNLLNARVLSEIF 165 (216)
T ss_dssp HHHCCCHHHHHHHH
T ss_pred cccCCCHHHHHHHH
Confidence 47899999888763
No 9
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=3.47 E-value=2e+02 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=11.4
Q ss_pred eccccchhhhhhhhh
Q psy9526 91 NYSQNQMSAKAIALV 105 (113)
Q Consensus 91 nysqnqmsakaialv 105 (113)
|-..|+|+++.+|.+
T Consensus 159 ~s~~NkM~~~NLAiv 173 (228)
T 3kuq_A 159 AVKENQMTPTNLAVC 173 (228)
T ss_dssp THHHHCCCHHHHHHH
T ss_pred hccccCCchhHhHHH
Confidence 346789999988865
No 10
>2le3_A Carnitine O-palmitoyltransferase 1, liver isoform; membrane protein, amphiphilic structure, membrane-protein interaction, structural switch; NMR {Homo sapiens}
Probab=3.38 E-value=5.4e+02 Score=15.03 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=20.7
Q ss_pred eEEeeCCCcceeccccchhhhhhhhhhccccc
Q psy9526 80 SVVLASPPMSVNYSQNQMSAKAIALVRADQKR 111 (113)
Q Consensus 80 svvlasppmsvnysqnqmsakaialvradqkr 111 (113)
++-+..-...+||++.-...--...+|+-.||
T Consensus 11 ~ftvt~eG~~~~~~~e~l~~i~~s~~rSwkkr 42 (42)
T 2le3_A 11 QFTVTPDGIDLRLSHEALRQIYLSGLHSWKKK 42 (42)
T ss_dssp EEEEETTEEEEEECHHHHHHHHHHHHHHHSCC
T ss_pred eeeecCCCccccccHHHHHHHHHHHHHHhhcC
Confidence 44456667788998877665555566665443
Done!