Query psy9526
Match_columns 113
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Fri Aug 16 21:52:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9526.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9526hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xa6a1 a.116.1.1 (A:271-466) 7.3 55 0.004 19.6 0.5 16 92-107 145-160 (196)
2 d1pbwa_ a.116.1.1 (A:) p85 alp 4.3 85 0.0062 19.1 0.0 14 93-106 141-154 (184)
3 d1zaka1 c.37.1.1 (A:3-127,A:15 3.7 1.8E+02 0.013 16.4 1.2 12 78-89 3-14 (189)
4 d1tx4a_ a.116.1.1 (A:) p50 Rho 3.7 87 0.0063 18.9 -0.4 15 91-105 146-160 (196)
5 d1k8ia2 d.19.1.1 (A:11-92) Cla 2.6 1.9E+02 0.014 17.7 0.5 10 88-97 30-39 (82)
6 d1hdma2 d.19.1.1 (A:13-93) Cla 2.5 2E+02 0.015 17.6 0.5 10 88-97 31-40 (81)
7 d1yj5a2 c.37.1.1 (A:351-522) 5 2.3 2.4E+02 0.018 16.4 0.6 11 77-87 13-23 (172)
8 d1yx1a1 c.1.15.7 (A:3-252) Hyp 2.1 3.2E+02 0.023 16.2 1.0 9 59-67 2-10 (250)
9 d1f7ca_ a.116.1.1 (A:) Graf {C 2.1 2.2E+02 0.016 16.7 0.2 11 95-105 139-149 (191)
10 d1y14b1 b.40.4.5 (B:81-171) C- 2.0 1.7E+02 0.012 15.8 -0.4 19 88-108 68-86 (91)
No 1
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.28 E-value=55 Score=19.62 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=12.1
Q ss_pred ccccchhhhhhhhhhc
Q psy9526 92 YSQNQMSAKAIALVRA 107 (113)
Q Consensus 92 ysqnqmsakaialvra 107 (113)
-++|+|++..+|.+=+
T Consensus 145 s~~NkM~~~nLA~~f~ 160 (196)
T d1xa6a1 145 EKDNFMNAENLGIVFG 160 (196)
T ss_dssp TTTSCCCHHHHHHHHT
T ss_pred hhhhccchhhhhHHhc
Confidence 3679999999887543
No 2
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.34 E-value=85 Score=19.08 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=10.7
Q ss_pred cccchhhhhhhhhh
Q psy9526 93 SQNQMSAKAIALVR 106 (113)
Q Consensus 93 sqnqmsakaialvr 106 (113)
.+|.|+++.+|.+=
T Consensus 141 ~~NkM~~~nLA~~f 154 (184)
T d1pbwa_ 141 SKNLLNARVLSEIF 154 (184)
T ss_dssp HHHCCCHHHHHHHH
T ss_pred hhhcccHhHHHHHh
Confidence 35899999888653
No 3
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=3.68 E-value=1.8e+02 Score=16.44 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=6.1
Q ss_pred CeeEEeeCCCcc
Q psy9526 78 PMSVVLASPPMS 89 (113)
Q Consensus 78 pmsvvlasppms 89 (113)
||-+++..||-|
T Consensus 3 Pm~I~i~GppGs 14 (189)
T d1zaka1 3 PLKVMISGAPAS 14 (189)
T ss_dssp SCCEEEEESTTS
T ss_pred CeEEEEECCCCC
Confidence 455555555544
No 4
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.66 E-value=87 Score=18.87 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=10.6
Q ss_pred eccccchhhhhhhhh
Q psy9526 91 NYSQNQMSAKAIALV 105 (113)
Q Consensus 91 nysqnqmsakaialv 105 (113)
|-.+|+|+++.+|.+
T Consensus 146 ~~~~nkM~~~nLa~~ 160 (196)
T d1tx4a_ 146 HSDQNKMTNTNLAVV 160 (196)
T ss_dssp THHHHCCCHHHHHHH
T ss_pred HHHHHccCHHHHHHH
Confidence 345688988887765
No 5
>d1k8ia2 d.19.1.1 (A:11-92) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=2.63 E-value=1.9e+02 Score=17.73 Aligned_cols=10 Identities=40% Similarity=0.607 Sum_probs=7.5
Q ss_pred cceeccccch
Q psy9526 88 MSVNYSQNQM 97 (113)
Q Consensus 88 msvnysqnqm 97 (113)
.|.|+|||+-
T Consensus 30 FsFdFsq~~r 39 (82)
T d1k8ia2 30 FSFDFSQNTR 39 (82)
T ss_dssp EEEETTTTEE
T ss_pred eeeecccCcc
Confidence 4788888864
No 6
>d1hdma2 d.19.1.1 (A:13-93) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
Probab=2.54 E-value=2e+02 Score=17.63 Aligned_cols=10 Identities=30% Similarity=0.441 Sum_probs=7.5
Q ss_pred cceeccccch
Q psy9526 88 MSVNYSQNQM 97 (113)
Q Consensus 88 msvnysqnqm 97 (113)
.|.|+|||+-
T Consensus 31 FsFdFsq~~r 40 (81)
T d1hdma2 31 FFFDFSQNTR 40 (81)
T ss_dssp EEEETTTTEE
T ss_pred eeeecccCcc
Confidence 4788888874
No 7
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.30 E-value=2.4e+02 Score=16.41 Aligned_cols=11 Identities=36% Similarity=0.413 Sum_probs=4.6
Q ss_pred CCeeEEeeCCC
Q psy9526 77 PPMSVVLASPP 87 (113)
Q Consensus 77 ppmsvvlaspp 87 (113)
.|.-+++.-+|
T Consensus 13 ~p~liil~G~p 23 (172)
T d1yj5a2 13 NPEVVVAVGFP 23 (172)
T ss_dssp SCCEEEEECCT
T ss_pred CCEEEEEECCC
Confidence 34444444444
No 8
>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.08 E-value=3.2e+02 Score=16.23 Aligned_cols=9 Identities=44% Similarity=0.785 Sum_probs=0.0
Q ss_pred CCeEEEecC
Q psy9526 59 PPISVVLAS 67 (113)
Q Consensus 59 ppisvvlas 67 (113)
+||||.|+|
T Consensus 2 ~p~~i~l~~ 10 (250)
T d1yx1a1 2 HPVSISLSS 10 (250)
T ss_dssp CCEEEEGGG
T ss_pred CCEEEEhhh
No 9
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.07 E-value=2.2e+02 Score=16.66 Aligned_cols=11 Identities=27% Similarity=0.483 Sum_probs=0.0
Q ss_pred cchhhhhhhhh
Q psy9526 95 NQMSAKAIALV 105 (113)
Q Consensus 95 nqmsakaialv 105 (113)
|+|+++.+|.+
T Consensus 139 NkM~~~nLA~~ 149 (191)
T d1f7ca_ 139 NLMTVANLGVV 149 (191)
T ss_dssp HCCCHHHHHHH
T ss_pred ccCcHHHHHHH
No 10
>d1y14b1 b.40.4.5 (B:81-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.05 E-value=1.7e+02 Score=15.81 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=0.0
Q ss_pred cceeccccchhhhhhhhhhcc
Q psy9526 88 MSVNYSQNQMSAKAIALVRAD 108 (113)
Q Consensus 88 msvnysqnqmsakaialvrad 108 (113)
.++++.+|++ .||+-.+.|
T Consensus 68 ~~v~~~~~~i--~~ig~~~~d 86 (91)
T d1y14b1 68 EGCISQVSSI--HAIGSIKED 86 (91)
T ss_dssp EEEEEETTEE--EEEEECCST
T ss_pred EEEecccCcc--EEEEEccCC
Done!