RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy9526
         (113 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 35/112 (31%)

Query: 21  ASPQMSVVLASPPMSVVLAS-------P-PMSVVLASPPMSVVL-----------ASPPI 61
           A P  S+    PP S++  S       P PM  + ++     V            A   +
Sbjct: 313 AYPNTSL----PP-SILEDSLENNEGVPSPMLSI-SNLTQEQVQDYVNKTNSHLPAGKQV 366

Query: 62  SVVLASPPMSVVLASPPMSVVLASPPMSVNYSQNQMSAKAIALVRADQKRRP 113
            + L +   ++V++ PP S  L        Y  N    KA A    DQ R P
Sbjct: 367 EISLVNGAKNLVVSGPPQS--L--------YGLNLTLRKAKAPSGLDQSRIP 408



 Score = 24.6 bits (53), Expect = 9.1
 Identities = 10/53 (18%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 18  VVLASPQMSVVLASPPMSVVLASPPMSVV--LASP---PMSVVLASPPISVVL 65
           +  ++  +S ++ +   +  + +  ++++  L +P   P    L S PIS  L
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.125    0.343 

Gapped
Lambda     K      H
   0.267   0.0802    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,520,993
Number of extensions: 82015
Number of successful extensions: 199
Number of sequences better than 10.0: 1
Number of HSP's gapped: 182
Number of HSP's successfully gapped: 18
Length of query: 113
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 36
Effective length of database: 4,551,876
Effective search space: 163867536
Effective search space used: 163867536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)