BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9529
(149 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O77215|UNC4_DROME Homeobox protein unc-4 OS=Drosophila melanogaster GN=unc-4 PE=2
SV=1
Length = 428
Score = 229 bits (584), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 109/134 (81%), Positives = 120/134 (89%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
A+KRRRSRTNFNSWQLEELERAF ASHYPD+FMREALA+RLDLKESRVAVWFQNRRAK R
Sbjct: 80 AAKRRRSRTNFNSWQLEELERAFSASHYPDIFMREALAMRLDLKESRVAVWFQNRRAKVR 139
Query: 70 KKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLERQQRKLAAKGVT 129
K+EHTKKGPGRPAHNA P TCSG+PIP ELK KERARR+KKL K+++RQ RKL AKG+T
Sbjct: 140 KREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDRQARKLQAKGIT 199
Query: 130 VDLETLKREWESQQ 143
VDLE LK E+ SQ
Sbjct: 200 VDLEALKAEYISQH 213
>sp|Q50D79|UNC4_DANRE Homeobox protein unc-4 homolog OS=Danio rerio GN=uncx PE=2 SV=2
Length = 470
Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 79/109 (72%), Positives = 87/109 (79%), Gaps = 2/109 (1%)
Query: 1 GDGNLSD--DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
GDG D KRRR+RTNF WQLEELE+A SHYPDVFMREALALRLDL ESRV
Sbjct: 87 GDGGDPDKESPGCKRRRTRTNFTGWQLEELEKASNESHYPDVFMREALALRLDLVESRVQ 146
Query: 59 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERAR 107
VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R+E R
Sbjct: 147 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARRELER 195
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 81/93 (87%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
KRRR+RTNF WQLEELE+AF SHYPDVFMREALALRLDL ESRV VWFQNRRAKWR
Sbjct: 106 GCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWR 165
Query: 70 KKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 102
KKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 166 KKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 74/93 (79%), Positives = 81/93 (87%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
KRRR+RTNF WQLEELE+AF SHYPDVFMREALALRLDL ESRV VWFQNRRAKWR
Sbjct: 102 GCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWR 161
Query: 70 KKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 102
KKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 162 KKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 194
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 73/93 (78%), Positives = 81/93 (87%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
KRRR+RTNF WQLEELE+AF SHYPDVFMREALA+RLDL ESRV VWFQNRRAKWR
Sbjct: 106 GCKRRRTRTNFTGWQLEELEKAFNESHYPDVFMREALAVRLDLVESRVQVWFQNRRAKWR 165
Query: 70 KKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 102
KKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 166 KKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 OS=Caenorhabditis elegans GN=unc-4 PE=1 SV=2
Length = 252
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 64/76 (84%)
Query: 2 DGNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWF 61
D N + + A+KRRR+RTNF+ WQLEELE AF ASHYPDVFMREALA+RLDL ESRV VWF
Sbjct: 77 DDNDTGESAAKRRRTRTNFSGWQLEELESAFEASHYPDVFMREALAMRLDLLESRVQVWF 136
Query: 62 QNRRAKWRKKEHTKKG 77
QNRRAKWRK+E + G
Sbjct: 137 QNRRAKWRKREQNRNG 152
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/86 (60%), Positives = 60/86 (69%), Gaps = 10/86 (11%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S+QLEELERAF +HYPDVF RE LA+RLDL E+RV VWFQNRRAKWRK+
Sbjct: 214 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 273
Query: 72 EHTKKGPGRPAHNAHPVTCSGDPIPA 97
E + AHP +G P P
Sbjct: 274 E-------KAGVQAHP---TGLPFPG 289
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S+QLEELERAF +HYPDVF RE LA+RLDL E+RV VWFQNRRAKWRK+
Sbjct: 327 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 386
Query: 72 E 72
E
Sbjct: 387 E 387
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S+QLEELERAF +HYPDVF RE LA+RLDL E+RV VWFQNRRAKWRK+
Sbjct: 331 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 390
Query: 72 E 72
E
Sbjct: 391 E 391
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/61 (75%), Positives = 52/61 (85%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S+QLEELERAF +HYPDVF RE LA+RLDL E+RV VWFQNRRAKWRK+
Sbjct: 329 KQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKR 388
Query: 72 E 72
E
Sbjct: 389 E 389
>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
purpuratus GN=ALX PE=2 SV=2
Length = 327
Score = 100 bits (248), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 52/61 (85%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S+QLEELERAF +HYPDVF RE LA+R+DL E+RV VWFQNRRAKWRK+
Sbjct: 211 KQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQVWFQNRRAKWRKR 270
Query: 72 E 72
E
Sbjct: 271 E 271
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 7/90 (7%)
Query: 2 DGNL---SDDLASKR--RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESR 56
DGN +D+ A KR RR RT F S+QLEELE+AF +HYPDVF RE LA+++ L E+R
Sbjct: 69 DGNSDCEADEYAPKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEAR 128
Query: 57 VAVWFQNRRAKWRKKEHTKKGPGRPAHNAH 86
+ VWFQNRRAKWRK+E K GP +N +
Sbjct: 129 IQVWFQNRRAKWRKQE--KVGPQSHPYNPY 156
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 11 SKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
SK+RR+RT F+++QLEELE+ F +HYPDV+ RE LALR DL E+RV VWFQNRRAKWRK
Sbjct: 151 SKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRK 210
Query: 71 KEHTKK 76
+E K
Sbjct: 211 RERYGK 216
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/66 (66%), Positives = 54/66 (81%)
Query: 11 SKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
SK+RR+RT F+++QLEELE+ F +HYPDV+ RE LALR DL E+RV VWFQNRRAKWRK
Sbjct: 151 SKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRK 210
Query: 71 KEHTKK 76
+E K
Sbjct: 211 RERYGK 216
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR+RT F S+QLEELE+ F +HYPDV+ RE LA+R DL E+RV VWFQNRRAKWRK+
Sbjct: 201 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 260
Query: 72 E 72
E
Sbjct: 261 E 261
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 97.4 bits (241), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR+RT F S+QLEELE+ F +HYPDV+ RE LA+R DL E+RV VWFQNRRAKWRK+
Sbjct: 199 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 258
Query: 72 E 72
E
Sbjct: 259 E 259
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 51/61 (83%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR+RT F S+QLEELE+ F +HYPDV+ RE LA+R DL E+RV VWFQNRRAKWRK+
Sbjct: 213 KKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 272
Query: 72 E 72
E
Sbjct: 273 E 273
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 1 GDGNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVW 60
GD S+ +SK+RR RT F S QLEELE+ F +HYPDV++RE LALR +L E+RV VW
Sbjct: 129 GDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVW 188
Query: 61 FQNRRAKWRKKE 72
FQNRRAKWRK+E
Sbjct: 189 FQNRRAKWRKRE 200
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 1 GDGNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVW 60
GD S+ +SK+RR RT F S QLEELE+ F +HYPDV++RE LALR +L E+RV VW
Sbjct: 120 GDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVW 179
Query: 61 FQNRRAKWRKKE 72
FQNRRAKWRK+E
Sbjct: 180 FQNRRAKWRKRE 191
>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
Length = 317
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 57/74 (77%), Gaps = 2/74 (2%)
Query: 1 GDGNLSDDLASKR--RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
GDG SD+ K+ RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV
Sbjct: 108 GDGKPSDEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167
Query: 59 VWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 168 VWFQNRRAKWRRQE 181
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 1 GDGNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVW 60
GD S+ +SK+RR RT F S QLEELE+ F +HYPDV++RE LALR +L E+RV VW
Sbjct: 120 GDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVW 179
Query: 61 FQNRRAKWRKKE 72
FQNRRAKWRK+E
Sbjct: 180 FQNRRAKWRKRE 191
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 96.7 bits (239), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 1 GDGNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVW 60
GD S+ +SK+RR RT F S QLEELE+ F +HYPDV++RE LALR +L E+RV VW
Sbjct: 120 GDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVW 179
Query: 61 FQNRRAKWRKKE 72
FQNRRAKWRK+E
Sbjct: 180 FQNRRAKWRKRE 191
>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
Length = 292
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%), Gaps = 2/72 (2%)
Query: 3 GNLSDDLASKR--RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVW 60
G LSDD K+ RR+RT F ++QL ELERAF SHYPDV+ RE LAL+++L E RV VW
Sbjct: 94 GKLSDDENPKKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQVW 153
Query: 61 FQNRRAKWRKKE 72
FQNRRAKWR++E
Sbjct: 154 FQNRRAKWRRQE 165
>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
Length = 325
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 2 DGNLSDD---LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
D LSDD K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV
Sbjct: 116 DNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
Query: 59 VWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 176 VWFQNRRAKWRRQE 189
>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
Length = 322
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 2 DGNLSDD---LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
D LSDD K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV
Sbjct: 116 DNKLSDDEQQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175
Query: 59 VWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 176 VWFQNRRAKWRRQE 189
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV VWFQNRRAKWR++
Sbjct: 527 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 586
Query: 72 E 72
E
Sbjct: 587 E 587
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV VWFQNRRAKWR++
Sbjct: 134 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 193
Query: 72 EHTKKG 77
E G
Sbjct: 194 EKMDTG 199
>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
GN=SMOX-3 PE=2 SV=1
Length = 288
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELERAF +HYPD++ RE LALR+DL E+RV VWFQNRRAK+RK
Sbjct: 3 KQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQVWFQNRRAKFRKT 62
Query: 72 E 72
E
Sbjct: 63 E 63
>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
Length = 342
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 1 GDGNLSDDLASKR--RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
GD LS++ K+ RR+RT F ++QL ELERAF SHYPDV+ RE LA +++L E RV
Sbjct: 122 GDSKLSEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
Query: 59 VWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 182 VWFQNRRAKWRRQE 195
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
Length = 334
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV VWFQNRRAKWR++
Sbjct: 141 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 200
Query: 72 E 72
E
Sbjct: 201 E 201
>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
Length = 330
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV VWFQNRRAKWR++
Sbjct: 136 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 195
Query: 72 E 72
E
Sbjct: 196 E 196
>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
Length = 228
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA++++L E RV VWFQNRRAKWR++
Sbjct: 35 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQ 94
Query: 72 E 72
E
Sbjct: 95 E 95
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
Length = 327
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA +++L E RV VWFQNRRAKWR++
Sbjct: 136 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQVWFQNRRAKWRRQ 195
Query: 72 E 72
E
Sbjct: 196 E 196
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL +LERAF ASHYPDV+ RE LA ++ L E RV VWFQNRRAKWR++
Sbjct: 26 KHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQ 85
Query: 72 EHTKKGPG 79
E + G G
Sbjct: 86 ERLESGSG 93
>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
PE=2 SV=1
Length = 268
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL ELERAF SHYPDV+ RE LA+++ L E RV VWFQNRRAKWR++
Sbjct: 86 KHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQVWFQNRRAKWRRQ 145
Query: 72 E 72
E
Sbjct: 146 E 146
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo
sapiens GN=RAX2 PE=1 SV=1
Length = 184
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL +LERAF ASHYPDV+ RE LA ++ L E RV VWFQNRRAKWR++
Sbjct: 26 KHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQ 85
Query: 72 EHTKKGPG 79
E + G G
Sbjct: 86 ERLESGSG 93
>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
SV=1
Length = 314
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELER F +HYPD++ RE LAL++DL E+RV VWFQNRRAK+RK+
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
Query: 72 E 72
E
Sbjct: 157 E 157
>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
SV=2
Length = 314
Score = 90.9 bits (224), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELER F +HYPD++ RE LAL++DL E+RV VWFQNRRAK+RK+
Sbjct: 97 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
Query: 72 E 72
E
Sbjct: 157 E 157
>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
Length = 342
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/75 (58%), Positives = 55/75 (73%), Gaps = 3/75 (4%)
Query: 1 GDGNLSDD---LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRV 57
GD LS++ K RR+RT F ++QL ELERAF SHYPDV+ RE LA +++L E RV
Sbjct: 122 GDSKLSEEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRV 181
Query: 58 AVWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 182 QVWFQNRRAKWRRQE 196
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan
paniscus GN=RAX2 PE=3 SV=1
Length = 184
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL +LERAF ASHYPDV+ RE LA ++ L E RV VWFQNRRAKWR++
Sbjct: 26 KHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQ 85
Query: 72 EHTKKGPG 79
E + G G
Sbjct: 86 ERLESGSG 93
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL +LERAF ASHYPDV+ RE LA ++ L E RV VWFQNRRAKWR++
Sbjct: 26 KHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQ 85
Query: 72 EHTKKGPG 79
E + G G
Sbjct: 86 ERLESGSG 93
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K RR+RT F ++QL +LERAF ASHYPDV+ RE LA ++ L E RV VWFQNRRAKWR++
Sbjct: 26 KHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVRVQVWFQNRRAKWRRQ 85
Query: 72 EHTKKGPG 79
E + G G
Sbjct: 86 ERLESGSG 93
>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
SV=1
Length = 280
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELER F +HYPD++ RE LAL++DL E+RV VWFQNRRAK+RK+
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 148
Query: 72 E 72
E
Sbjct: 149 E 149
>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
PE=2 SV=1
Length = 281
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELER F +HYPD++ RE LAL++DL E+RV VWFQNRRAK+RK+
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 148
Query: 72 E 72
E
Sbjct: 149 E 149
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QLEELE+AF +HYPDV+ RE LA++ +L E R+ VWFQNRRAKWRK+
Sbjct: 147 KKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 206
Query: 72 E 72
E
Sbjct: 207 E 207
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QLEELE+AF +HYPDV+ RE LA++ +L E R+ VWFQNRRAKWRK+
Sbjct: 150 KKRRHRTVFTSHQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 209
Query: 72 E 72
E
Sbjct: 210 E 210
>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
SV=2
Length = 284
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 50/61 (81%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F S QL+ELER F +HYPD++ RE LAL++DL E+RV VWFQNRRAK+RK+
Sbjct: 89 KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 148
Query: 72 E 72
E
Sbjct: 149 E 149
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F + QLEELE+AF +HYPDV+ RE LA++ +L E R+ VWFQNRRAKWRK+
Sbjct: 163 KKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKR 222
Query: 72 E 72
E
Sbjct: 223 E 223
>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
Length = 346
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 56/74 (75%), Gaps = 2/74 (2%)
Query: 1 GDGNLSDDLASKR--RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVA 58
G+ LS++ K+ RR+RT F ++QL ELERAF SHYPDV+ RE LA +++L E RV
Sbjct: 122 GEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181
Query: 59 VWFQNRRAKWRKKE 72
VWFQNRRAKWR++E
Sbjct: 182 VWFQNRRAKWRRQE 195
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 89.0 bits (219), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 49/61 (80%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RR RT F + QLEELE+AF +HYPDV+ RE LA++ +L E R+ VWFQNRRAKWRK+
Sbjct: 163 KKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKR 222
Query: 72 E 72
E
Sbjct: 223 E 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,114,738
Number of Sequences: 539616
Number of extensions: 2168495
Number of successful extensions: 11595
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 136
Number of HSP's that attempted gapping in prelim test: 10135
Number of HSP's gapped (non-prelim): 1590
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)