Query psy9529
Match_columns 149
No_of_seqs 209 out of 1455
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 21:56:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nk2_P Homeobox protein VND; h 99.9 1.1E-22 3.6E-27 133.8 8.7 74 6-79 2-75 (77)
2 2dms_A Homeobox protein OTX2; 99.9 2.7E-22 9.3E-27 132.7 8.8 66 10-75 4-69 (80)
3 2dmt_A Homeobox protein BARH-l 99.9 1E-22 3.6E-27 134.8 6.6 66 8-73 12-77 (80)
4 2da3_A Alpha-fetoprotein enhan 99.9 1E-22 3.4E-27 134.5 5.9 68 5-72 9-76 (80)
5 1wh5_A ZF-HD homeobox family p 99.9 1.4E-22 4.8E-27 134.4 6.3 63 8-70 12-78 (80)
6 2dmq_A LIM/homeobox protein LH 99.9 5E-22 1.7E-26 131.3 8.9 67 10-76 4-70 (80)
7 2cue_A Paired box protein PAX6 99.9 2.7E-22 9.4E-27 132.8 6.4 66 10-75 4-69 (80)
8 3a01_A Homeodomain-containing 99.9 6.8E-22 2.3E-26 134.5 8.2 73 6-78 10-82 (93)
9 2dmu_A Homeobox protein goosec 99.9 5.2E-22 1.8E-26 128.2 7.1 64 10-73 4-67 (70)
10 2cra_A Homeobox protein HOX-B1 99.9 3.4E-22 1.2E-26 129.1 6.0 64 10-73 4-67 (70)
11 1wh7_A ZF-HD homeobox family p 99.9 3E-22 1E-26 132.9 5.5 64 6-70 10-78 (80)
12 2kt0_A Nanog, homeobox protein 99.9 5E-22 1.7E-26 132.4 6.6 66 8-73 17-82 (84)
13 2da2_A Alpha-fetoprotein enhan 99.9 4.6E-22 1.6E-26 128.4 6.1 65 9-73 3-67 (70)
14 1ahd_P Antennapedia protein mu 99.9 3.9E-22 1.3E-26 128.3 5.6 66 13-78 2-67 (68)
15 2da1_A Alpha-fetoprotein enhan 99.9 4.4E-22 1.5E-26 128.5 5.4 64 10-73 4-67 (70)
16 2h1k_A IPF-1, pancreatic and d 99.9 6.4E-22 2.2E-26 125.3 6.0 61 12-72 2-62 (63)
17 2djn_A Homeobox protein DLX-5; 99.9 5.8E-22 2E-26 128.0 5.5 63 10-72 4-66 (70)
18 2vi6_A Homeobox protein nanog; 99.9 4.7E-22 1.6E-26 125.5 4.9 60 12-71 2-61 (62)
19 2e1o_A Homeobox protein PRH; D 99.8 1.6E-21 5.5E-26 125.9 7.1 63 11-73 5-67 (70)
20 1puf_A HOX-1.7, homeobox prote 99.8 2.5E-21 8.7E-26 127.2 7.9 66 9-74 9-74 (77)
21 2da4_A Hypothetical protein DK 99.8 8.3E-22 2.8E-26 130.4 5.4 65 9-73 4-72 (80)
22 1fjl_A Paired protein; DNA-bin 99.8 1.7E-21 5.8E-26 129.2 6.7 65 9-73 14-78 (81)
23 2hdd_A Protein (engrailed home 99.8 1.2E-21 4E-26 123.3 5.6 58 13-70 3-60 (61)
24 2m0c_A Homeobox protein arista 99.8 2E-21 6.8E-26 126.7 6.3 67 8-74 4-70 (75)
25 1ig7_A Homeotic protein MSX-1; 99.8 2.7E-21 9.2E-26 120.4 6.4 57 14-70 1-57 (58)
26 1zq3_P PRD-4, homeotic bicoid 99.8 3.7E-21 1.3E-25 123.6 7.1 63 13-75 2-64 (68)
27 2l7z_A Homeobox protein HOX-A1 99.8 3.5E-21 1.2E-25 125.4 7.1 64 10-73 4-67 (73)
28 2r5y_A Homeotic protein sex co 99.8 1.5E-21 5.1E-26 131.4 5.5 65 8-72 23-87 (88)
29 1yz8_P Pituitary homeobox 2; D 99.8 1.1E-21 3.7E-26 126.0 4.3 63 12-74 2-64 (68)
30 1ftt_A TTF-1 HD, thyroid trans 99.8 3.4E-21 1.1E-25 123.8 6.4 62 13-74 2-63 (68)
31 1bw5_A ISL-1HD, insulin gene e 99.8 1.9E-21 6.4E-26 124.2 4.8 61 12-72 2-62 (66)
32 1b8i_A Ultrabithorax, protein 99.8 3.3E-21 1.1E-25 127.9 5.5 64 9-72 16-79 (81)
33 1jgg_A Segmentation protein EV 99.8 5.2E-21 1.8E-25 119.9 5.9 58 14-71 2-59 (60)
34 2cuf_A FLJ21616 protein; homeo 99.8 1.2E-20 4.2E-25 128.6 8.1 67 9-75 3-84 (95)
35 2da5_A Zinc fingers and homeob 99.8 1.9E-20 6.6E-25 122.5 7.4 62 15-76 9-70 (75)
36 2hi3_A Homeodomain-only protei 99.8 1.9E-20 6.4E-25 121.9 7.3 61 14-74 3-64 (73)
37 2k40_A Homeobox expressed in E 99.8 8.7E-21 3E-25 121.4 5.5 61 14-74 2-62 (67)
38 3rkq_A Homeobox protein NKX-2. 99.8 1E-20 3.4E-25 117.4 5.5 57 13-69 2-58 (58)
39 2dn0_A Zinc fingers and homeob 99.8 1.1E-20 3.7E-25 123.9 5.9 62 13-74 8-69 (76)
40 1akh_A Protein (mating-type pr 99.8 7.1E-21 2.4E-25 119.6 4.7 59 11-69 3-61 (61)
41 1b72_A Protein (homeobox prote 99.8 1.1E-20 3.8E-25 129.3 6.0 65 10-74 31-95 (97)
42 3a02_A Homeobox protein arista 99.8 8.5E-21 2.9E-25 119.0 4.8 57 16-72 2-58 (60)
43 1uhs_A HOP, homeodomain only p 99.8 2.5E-20 8.6E-25 120.9 7.1 60 14-73 2-62 (72)
44 3nar_A ZHX1, zinc fingers and 99.8 1.6E-20 5.6E-25 128.3 5.6 65 8-72 20-84 (96)
45 3a03_A T-cell leukemia homeobo 99.8 2.7E-20 9.1E-25 115.3 5.5 54 18-71 2-55 (56)
46 2ecb_A Zinc fingers and homeob 99.8 1.2E-19 4.2E-24 122.4 9.2 58 19-76 17-74 (89)
47 2dmp_A Zinc fingers and homeob 99.8 1.3E-19 4.3E-24 122.4 9.0 61 16-76 16-76 (89)
48 2ecc_A Homeobox and leucine zi 99.8 3.9E-20 1.3E-24 121.3 6.2 57 16-72 6-62 (76)
49 2ly9_A Zinc fingers and homeob 99.8 4.6E-20 1.6E-24 120.1 6.5 63 12-74 5-67 (74)
50 1x2n_A Homeobox protein pknox1 99.8 7.6E-20 2.6E-24 118.8 7.4 63 10-72 4-69 (73)
51 1wi3_A DNA-binding protein SAT 99.8 6.8E-20 2.3E-24 117.0 6.2 59 10-68 4-63 (71)
52 2dmn_A Homeobox protein TGIF2L 99.8 2.6E-19 8.8E-24 119.3 8.7 66 10-75 4-72 (83)
53 1du6_A PBX1, homeobox protein 99.8 4.5E-20 1.6E-24 117.0 4.3 59 12-70 2-63 (64)
54 1b72_B Protein (PBX1); homeodo 99.8 2.7E-20 9.1E-25 124.8 3.2 61 14-74 2-65 (87)
55 1puf_B PRE-B-cell leukemia tra 99.8 1.5E-19 5E-24 117.5 6.5 61 13-73 1-64 (73)
56 2da6_A Hepatocyte nuclear fact 99.8 2.5E-19 8.6E-24 123.4 7.6 66 10-75 3-89 (102)
57 1au7_A Protein PIT-1, GHF-1; c 99.8 7.7E-20 2.6E-24 133.7 5.0 64 8-71 82-145 (146)
58 1e3o_C Octamer-binding transcr 99.8 1.1E-19 3.6E-24 134.8 4.9 62 10-71 98-159 (160)
59 2xsd_C POU domain, class 3, tr 99.8 1.5E-19 5E-24 134.6 4.4 65 10-74 96-160 (164)
60 1k61_A Mating-type protein alp 99.8 4E-19 1.4E-23 111.2 5.7 56 16-71 1-59 (60)
61 3d1n_I POU domain, class 6, tr 99.8 4.8E-19 1.6E-23 130.0 6.3 62 9-70 89-150 (151)
62 2cqx_A LAG1 longevity assuranc 99.8 2.6E-19 8.8E-24 116.4 3.7 58 14-71 9-67 (72)
63 1mnm_C Protein (MAT alpha-2 tr 99.8 7.2E-19 2.5E-23 117.9 5.9 59 11-69 25-86 (87)
64 1lfb_A Liver transcription fac 99.8 4E-19 1.4E-23 122.2 3.9 65 9-73 5-90 (99)
65 1le8_B Mating-type protein alp 99.7 1.4E-18 4.9E-23 115.6 5.5 59 14-72 3-64 (83)
66 2l9r_A Homeobox protein NKX-3. 99.7 1.2E-18 4.1E-23 112.4 4.8 57 18-74 9-65 (69)
67 3nau_A Zinc fingers and homeob 99.7 1.5E-18 5.2E-23 110.5 5.0 52 20-71 11-62 (66)
68 3l1p_A POU domain, class 5, tr 99.7 1.2E-18 4E-23 128.5 4.6 61 11-71 94-154 (155)
69 2d5v_A Hepatocyte nuclear fact 99.7 1.7E-18 5.9E-23 128.5 4.4 66 9-74 93-158 (164)
70 2e19_A Transcription factor 8; 99.7 3.2E-18 1.1E-22 108.8 4.3 53 18-70 8-60 (64)
71 1x2m_A LAG1 longevity assuranc 99.7 3.4E-18 1.1E-22 108.6 2.7 49 22-70 9-58 (64)
72 3k2a_A Homeobox protein MEIS2; 99.6 1.3E-16 4.4E-21 102.2 5.1 54 19-72 4-60 (67)
73 1ic8_A Hepatocyte nuclear fact 99.6 4.5E-17 1.5E-21 124.1 1.7 61 10-70 112-193 (194)
74 2da7_A Zinc finger homeobox pr 99.6 2.1E-15 7E-20 96.7 4.7 46 22-67 14-59 (71)
75 2h8r_A Hepatocyte nuclear fact 99.6 2.1E-15 7.4E-20 116.4 5.0 59 10-68 139-218 (221)
76 2lk2_A Homeobox protein TGIF1; 99.5 6.8E-14 2.3E-18 94.0 6.9 58 18-75 10-70 (89)
77 1mh3_A Maltose binding-A1 home 99.4 1.1E-13 3.9E-18 113.4 3.7 56 14-69 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.8 1.1E-09 3.9E-14 61.7 1.9 22 55-76 1-22 (37)
79 2ys9_A Homeobox and leucine zi 95.4 0.011 3.8E-07 37.4 3.0 44 20-63 13-56 (70)
80 2glo_A Brinker CG9653-PA; prot 85.6 0.75 2.6E-05 27.0 3.1 46 17-63 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 84.4 3 0.0001 26.3 5.9 48 10-62 13-60 (87)
82 1hlv_A CENP-B, major centromer 82.7 1.6 5.5E-05 29.3 4.2 49 16-67 4-52 (131)
83 3hug_A RNA polymerase sigma fa 77.7 2.8 9.6E-05 26.6 3.9 48 20-72 38-85 (92)
84 1tc3_C Protein (TC3 transposas 76.1 4.2 0.00015 21.6 3.9 40 19-63 5-44 (51)
85 1jko_C HIN recombinase, DNA-in 75.2 2 6.9E-05 23.4 2.4 41 19-64 5-45 (52)
86 2o8x_A Probable RNA polymerase 73.3 3.8 0.00013 24.1 3.4 47 19-70 15-61 (70)
87 1je8_A Nitrate/nitrite respons 70.4 4.4 0.00015 25.2 3.4 48 16-69 18-65 (82)
88 2jn6_A Protein CGL2762, transp 68.8 6 0.00021 25.1 3.9 42 17-62 3-45 (97)
89 1iuf_A Centromere ABP1 protein 65.8 8 0.00027 26.7 4.3 50 14-63 6-59 (144)
90 1ku3_A Sigma factor SIGA; heli 64.9 8.1 0.00028 23.2 3.7 50 19-69 10-59 (73)
91 1s7o_A Hypothetical UPF0122 pr 64.8 8.2 0.00028 25.8 4.0 48 19-71 22-69 (113)
92 1p4w_A RCSB; solution structur 61.6 8.8 0.0003 25.0 3.6 45 17-67 32-76 (99)
93 3c57_A Two component transcrip 60.4 8.4 0.00029 24.6 3.3 46 19-70 27-72 (95)
94 3mzy_A RNA polymerase sigma-H 60.3 9.4 0.00032 25.7 3.8 46 20-71 110-155 (164)
95 2p7v_B Sigma-70, RNA polymeras 59.9 6.6 0.00023 23.2 2.6 51 19-70 5-55 (68)
96 1xsv_A Hypothetical UPF0122 pr 59.0 12 0.00041 24.8 4.0 48 19-71 25-72 (113)
97 1tty_A Sigma-A, RNA polymerase 57.0 9.7 0.00033 23.8 3.1 50 19-69 18-67 (87)
98 2rn7_A IS629 ORFA; helix, all 56.8 13 0.00045 23.9 3.9 46 17-62 4-52 (108)
99 1fse_A GERE; helix-turn-helix 56.4 13 0.00046 21.7 3.6 47 17-69 9-55 (74)
100 1x3u_A Transcriptional regulat 53.6 10 0.00035 22.7 2.7 44 20-69 17-60 (79)
101 1or7_A Sigma-24, RNA polymeras 52.5 16 0.00056 25.4 4.0 29 43-71 159-187 (194)
102 1rp3_A RNA polymerase sigma fa 52.2 16 0.00055 26.2 4.1 47 20-71 188-234 (239)
103 1wj7_A Hypothetical protein (R 52.0 30 0.001 23.1 5.0 53 8-61 8-61 (104)
104 2rnj_A Response regulator prot 47.7 11 0.00038 23.6 2.2 46 18-69 28-73 (91)
105 2k27_A Paired box protein PAX- 47.7 48 0.0016 22.6 5.8 41 18-63 24-64 (159)
106 2lfw_A PHYR sigma-like domain; 45.9 16 0.00055 25.1 3.1 47 20-71 94-140 (157)
107 1u78_A TC3 transposase, transp 45.8 29 0.00099 22.8 4.3 41 18-63 5-45 (141)
108 2q24_A Putative TETR family tr 45.6 8.7 0.0003 26.6 1.6 42 23-66 19-60 (194)
109 2x48_A CAG38821; archeal virus 45.6 19 0.00063 20.0 2.8 39 19-62 13-53 (55)
110 3fmy_A HTH-type transcriptiona 44.2 26 0.0009 20.8 3.5 41 18-65 9-49 (73)
111 3i5g_B Myosin regulatory light 42.1 58 0.002 22.0 5.5 40 16-55 6-50 (153)
112 3ulq_B Transcriptional regulat 41.9 37 0.0012 21.4 4.1 45 16-66 26-70 (90)
113 2lv7_A Calcium-binding protein 40.3 51 0.0018 20.8 4.7 47 16-62 26-79 (100)
114 2xi8_A Putative transcription 38.5 12 0.00041 21.1 1.2 22 43-64 17-38 (66)
115 3bd1_A CRO protein; transcript 38.4 12 0.00042 22.5 1.3 23 43-65 14-36 (79)
116 2r1j_L Repressor protein C2; p 37.3 13 0.00045 21.1 1.2 23 43-65 21-43 (68)
117 1pdn_C Protein (PRD paired); p 37.2 36 0.0012 21.6 3.6 40 19-63 17-56 (128)
118 1fi6_A EH domain protein REPS1 36.9 32 0.0011 21.2 3.2 44 19-62 2-50 (92)
119 2q1z_A RPOE, ECF SIGE; ECF sig 36.5 10 0.00036 26.2 0.8 27 44-70 155-181 (184)
120 1zug_A Phage 434 CRO protein; 35.6 14 0.00048 21.2 1.2 23 43-65 19-41 (71)
121 3o9x_A Uncharacterized HTH-typ 34.9 38 0.0013 22.4 3.5 22 43-64 87-108 (133)
122 2pmy_A RAS and EF-hand domain- 34.7 24 0.00084 21.5 2.3 46 17-62 18-68 (91)
123 2hku_A A putative transcriptio 34.6 13 0.00045 26.1 1.1 40 25-66 26-65 (215)
124 2jpc_A SSRB; DNA binding prote 34.6 18 0.0006 20.5 1.5 27 43-69 16-42 (61)
125 3bs3_A Putative DNA-binding pr 34.1 16 0.00055 21.3 1.3 23 43-65 26-48 (76)
126 2q0o_A Probable transcriptiona 33.4 48 0.0016 24.2 4.1 46 17-68 173-218 (236)
127 3omt_A Uncharacterized protein 33.0 18 0.00063 21.1 1.5 22 43-64 24-45 (73)
128 2qko_A Possible transcriptiona 32.6 42 0.0015 23.3 3.6 43 25-68 34-76 (215)
129 2qwt_A Transcriptional regulat 32.5 24 0.00082 24.4 2.2 40 25-66 19-58 (196)
130 1c07_A Protein (epidermal grow 32.4 41 0.0014 20.9 3.2 44 19-62 3-51 (95)
131 3ccy_A Putative TETR-family tr 32.2 31 0.001 23.8 2.7 43 23-66 18-60 (203)
132 1adr_A P22 C2 repressor; trans 31.8 18 0.00061 21.1 1.2 23 43-65 21-43 (76)
133 2hin_A GP39, repressor protein 31.5 19 0.00065 22.2 1.3 21 43-63 13-33 (71)
134 2b5a_A C.BCLI; helix-turn-heli 31.4 19 0.00064 21.1 1.3 22 43-64 26-47 (77)
135 1k78_A Paired box protein PAX5 31.4 49 0.0017 22.2 3.6 41 18-63 31-71 (149)
136 2kvr_A Ubiquitin carboxyl-term 30.9 14 0.00047 25.5 0.7 23 43-65 72-94 (130)
137 1r69_A Repressor protein CI; g 30.9 19 0.00065 20.5 1.2 23 43-65 17-39 (69)
138 2x7l_M HIV REV; nuclear export 30.8 34 0.0012 23.2 2.6 34 26-73 16-49 (115)
139 2hxi_A Putative transcriptiona 29.9 31 0.0011 25.3 2.5 49 17-66 26-75 (241)
140 2qtq_A Transcriptional regulat 29.4 26 0.00088 24.1 1.9 43 23-66 20-62 (213)
141 3b7h_A Prophage LP1 protein 11 29.0 21 0.00073 20.9 1.3 23 43-65 23-45 (78)
142 3clo_A Transcriptional regulat 28.7 57 0.002 24.2 3.9 47 18-70 196-242 (258)
143 1y7y_A C.AHDI; helix-turn-heli 28.6 22 0.00077 20.5 1.3 22 43-64 29-50 (74)
144 1rzs_A Antirepressor, regulato 28.6 19 0.00066 20.9 1.0 19 43-61 13-31 (61)
145 1l3l_A Transcriptional activat 28.6 60 0.0021 23.6 4.0 46 17-68 171-216 (234)
146 2kpj_A SOS-response transcript 27.3 24 0.00081 21.9 1.3 23 43-65 25-47 (94)
147 2ofy_A Putative XRE-family tra 27.1 74 0.0025 18.9 3.6 24 42-65 29-52 (86)
148 2k27_A Paired box protein PAX- 26.9 1.3E+02 0.0044 20.3 5.3 47 17-63 81-134 (159)
149 3t72_q RNA polymerase sigma fa 26.7 80 0.0027 20.3 3.9 51 19-70 19-69 (99)
150 2a6c_A Helix-turn-helix motif; 26.3 27 0.00094 21.1 1.4 23 43-65 34-56 (83)
151 8tfv_A Protein (thanatin); bac 26.1 13 0.00043 17.3 -0.2 14 54-67 3-16 (21)
152 2lhi_A Calmodulin, serine/thre 25.8 57 0.0019 22.6 3.2 39 17-55 2-45 (176)
153 2wiu_B HTH-type transcriptiona 25.6 30 0.001 20.7 1.5 23 43-65 28-50 (88)
154 3dcf_A Transcriptional regulat 25.3 27 0.00092 24.1 1.4 42 24-66 36-77 (218)
155 3g7r_A Putative transcriptiona 25.0 27 0.00093 24.6 1.4 40 25-65 41-80 (221)
156 2ef8_A C.ECOT38IS, putative tr 24.3 30 0.001 20.5 1.3 22 43-64 26-47 (84)
157 2ict_A Antitoxin HIGA; helix-t 24.3 29 0.001 21.4 1.3 23 43-65 24-46 (94)
158 4h79_A Crispr-associated prote 24.1 89 0.003 23.2 4.1 30 111-140 146-175 (216)
159 1l0o_C Sigma factor; bergerat 23.7 17 0.00057 26.1 0.0 26 41-66 215-240 (243)
160 2v79_A DNA replication protein 23.3 93 0.0032 21.2 3.9 43 20-65 30-76 (135)
161 3f6w_A XRE-family like protein 23.2 31 0.0011 20.5 1.2 22 43-64 30-51 (83)
162 2k9q_A Uncharacterized protein 23.1 30 0.001 20.4 1.1 23 43-65 18-40 (77)
163 3bru_A Regulatory protein, TET 22.9 43 0.0015 23.2 2.1 41 25-66 36-76 (222)
164 2fq4_A Transcriptional regulat 22.9 37 0.0013 23.2 1.7 43 25-68 18-60 (192)
165 1j9i_A GPNU1 DBD;, terminase s 22.8 38 0.0013 19.9 1.5 21 43-63 5-25 (68)
166 2rae_A Transcriptional regulat 22.8 42 0.0014 23.0 2.0 41 24-65 22-62 (207)
167 2i10_A Putative TETR transcrip 22.5 50 0.0017 22.9 2.4 43 23-66 15-57 (202)
168 3rd3_A Probable transcriptiona 22.1 27 0.00092 23.6 0.9 43 23-66 14-56 (197)
169 2hxo_A Putative TETR-family tr 21.8 66 0.0023 23.4 3.0 53 14-67 10-63 (237)
170 2rek_A Putative TETR-family tr 21.7 24 0.00082 24.2 0.5 39 25-65 22-60 (199)
171 3fiw_A Putative TETR-family tr 21.4 31 0.001 24.7 1.1 53 15-68 20-73 (211)
172 3qp6_A CVIR transcriptional re 21.2 1.2E+02 0.0042 22.6 4.5 45 18-68 196-240 (265)
173 1lmb_3 Protein (lambda repress 21.0 37 0.0013 20.6 1.2 22 43-64 33-54 (92)
174 2jml_A DNA binding domain/tran 20.8 36 0.0012 20.8 1.2 19 43-61 8-26 (81)
175 3jsj_A Putative TETR-family tr 20.5 39 0.0013 22.8 1.5 42 23-66 13-54 (190)
176 3s8q_A R-M controller protein; 20.4 39 0.0013 20.0 1.3 22 43-64 27-48 (82)
177 3t76_A VANU, transcriptional r 20.2 39 0.0013 21.2 1.3 24 42-65 39-62 (88)
178 2eqr_A N-COR1, N-COR, nuclear 20.1 1.4E+02 0.0047 17.2 4.2 50 12-65 7-58 (61)
179 3c3w_A Two component transcrip 20.1 68 0.0023 22.8 2.7 45 18-68 148-192 (225)
No 1
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.88 E-value=1.1e-22 Score=133.83 Aligned_cols=74 Identities=38% Similarity=0.532 Sum_probs=66.8
Q ss_pred CCCcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcCCCC
Q psy9529 6 SDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKKGPG 79 (149)
Q Consensus 6 ~~~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~~~~ 79 (149)
+++.+.+.++.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+........+
T Consensus 2 s~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~~~~~ 75 (77)
T 1nk2_P 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEKGYEG 75 (77)
T ss_dssp CSCCSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccccCCC
Confidence 34556778899999999999999999999999999999999999999999999999999999999877655444
No 2
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=2.7e-22 Score=132.71 Aligned_cols=66 Identities=52% Similarity=0.885 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhc
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTK 75 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~ 75 (149)
+++.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 456789999999999999999999999999999999999999999999999999999999976554
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=134.80 Aligned_cols=66 Identities=42% Similarity=0.591 Sum_probs=61.4
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
....+.++.||.||.+|+.+||..|..++||+..++..||..|||++.+|+|||||||+|+|+...
T Consensus 12 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 12 TKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 345677899999999999999999999999999999999999999999999999999999998643
No 4
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=134.53 Aligned_cols=68 Identities=34% Similarity=0.463 Sum_probs=62.5
Q ss_pred CCCCcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 5 LSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 5 ~~~~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
.++..+.+.+|.||.||.+|+.+|+..|..++||+..++..||..|||++.+|+|||||||+++|+..
T Consensus 9 ~~~~~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 76 (80)
T 2da3_A 9 TGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSG 76 (80)
T ss_dssp CCCCCCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhc
Confidence 33344677889999999999999999999999999999999999999999999999999999999864
No 5
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.87 E-value=1.4e-22 Score=134.41 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=59.0
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLA----SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~----~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
....+++|.||.||.+|+..|+.+|.. ++||+..++++||..|||++.+|+|||||||+|+|+
T Consensus 12 ~~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 12 AGGGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 345678899999999999999999999 999999999999999999999999999999999875
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=5e-22 Score=131.29 Aligned_cols=67 Identities=34% Similarity=0.539 Sum_probs=62.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcC
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKK 76 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~ 76 (149)
.++.+|.||.||.+|+.+|+.+|..++||+..++..||..|||++.+|+|||||||+++|+......
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3557899999999999999999999999999999999999999999999999999999999875543
No 7
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=2.7e-22 Score=132.76 Aligned_cols=66 Identities=53% Similarity=0.966 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhc
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTK 75 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~ 75 (149)
+++.+|.||.||..|+.+||..|..++||+..++..||..|||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 356789999999999999999999999999999999999999999999999999999999986554
No 8
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.86 E-value=6.8e-22 Score=134.51 Aligned_cols=73 Identities=36% Similarity=0.660 Sum_probs=64.6
Q ss_pred CCCcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcCCC
Q psy9529 6 SDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKKGP 78 (149)
Q Consensus 6 ~~~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~~~ 78 (149)
....+.+.++.||.||.+|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+........
T Consensus 10 ~~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 10 QNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp TTSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred CCCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHHHHHH
Confidence 3445677889999999999999999999999999999999999999999999999999999999987654433
No 9
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.2e-22 Score=128.18 Aligned_cols=64 Identities=52% Similarity=0.832 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
+++.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 3457889999999999999999999999999999999999999999999999999999998654
No 10
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=3.4e-22 Score=129.11 Aligned_cols=64 Identities=33% Similarity=0.534 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
.++.++.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 4567889999999999999999999999999999999999999999999999999999998643
No 11
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.86 E-value=3e-22 Score=132.89 Aligned_cols=64 Identities=19% Similarity=0.295 Sum_probs=58.7
Q ss_pred CCCcCCCCCCCCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 6 SDDLASKRRRSRTNFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 6 ~~~~~~k~rr~Rt~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
..+...+++|.||.||.+|+..|+ .|.. ++||+..++++||..|||++.+|+|||||||+|+++
T Consensus 10 ~~~~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 10 PSSSGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 334466788999999999999999 7999 999999999999999999999999999999999875
No 12
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=5e-22 Score=132.43 Aligned_cols=66 Identities=30% Similarity=0.454 Sum_probs=61.6
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
....+.++.||.||..|+.+|+.+|..++||+..++..||..|||++.+|+|||||||+|+|+..+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 346778899999999999999999999999999999999999999999999999999999998653
No 13
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=4.6e-22 Score=128.36 Aligned_cols=65 Identities=40% Similarity=0.501 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
..++.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 3 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 3 SGSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp CSCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 34567899999999999999999999999999999999999999999999999999999998643
No 14
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.86 E-value=3.9e-22 Score=128.27 Aligned_cols=66 Identities=39% Similarity=0.709 Sum_probs=61.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcCCC
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKKGP 78 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~~~ 78 (149)
++|.||.||..|+..||..|..++||+..++..||..+||++.+|+|||||||+++|+.......+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~~~~ 67 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTKGEP 67 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCCSSC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccccCCC
Confidence 478899999999999999999999999999999999999999999999999999999987655443
No 15
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=4.4e-22 Score=128.47 Aligned_cols=64 Identities=25% Similarity=0.294 Sum_probs=60.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
..+.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4567899999999999999999999999999999999999999999999999999999998654
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.85 E-value=6.4e-22 Score=125.34 Aligned_cols=61 Identities=44% Similarity=0.755 Sum_probs=56.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+.++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4688999999999999999999999999999999999999999999999999999999864
No 17
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.8e-22 Score=128.03 Aligned_cols=63 Identities=38% Similarity=0.650 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+++.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSG 66 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccC
Confidence 456789999999999999999999999999999999999999999999999999999999854
No 18
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.85 E-value=4.7e-22 Score=125.53 Aligned_cols=60 Identities=30% Similarity=0.463 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+.++.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 568899999999999999999999999999999999999999999999999999999985
No 19
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=1.6e-21 Score=125.90 Aligned_cols=63 Identities=40% Similarity=0.595 Sum_probs=59.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 11 SKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 11 ~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
.+.++.|+.||.+|+.+||..|..++||+..++..||..+||++.+|++||||||+++|+...
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 456788999999999999999999999999999999999999999999999999999998654
No 20
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.85 E-value=2.5e-21 Score=127.21 Aligned_cols=66 Identities=36% Similarity=0.511 Sum_probs=61.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
..++.++.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 356678899999999999999999999999999999999999999999999999999999987654
No 21
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=8.3e-22 Score=130.36 Aligned_cols=65 Identities=26% Similarity=0.266 Sum_probs=60.5
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhC----CCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLAS----HYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~----~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
..++.+|.||.||.+|+.+|+.+|..+ +||+..++..||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 345678999999999999999999999 99999999999999999999999999999999998543
No 22
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.85 E-value=1.7e-21 Score=129.16 Aligned_cols=65 Identities=57% Similarity=0.944 Sum_probs=59.7
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
..++.++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 45677899999999999999999999999999999999999999999999999999999998764
No 23
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.84 E-value=1.2e-21 Score=123.30 Aligned_cols=58 Identities=40% Similarity=0.668 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+|.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5788999999999999999999999999999999999999999999999999999986
No 24
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=126.71 Aligned_cols=67 Identities=63% Similarity=1.068 Sum_probs=62.0
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
+..+++++.||.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 3456778999999999999999999999999999999999999999999999999999999987654
No 25
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.84 E-value=2.7e-21 Score=120.36 Aligned_cols=57 Identities=42% Similarity=0.686 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=3.7e-21 Score=123.61 Aligned_cols=63 Identities=35% Similarity=0.599 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhc
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTK 75 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~ 75 (149)
+++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+.....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhccc
Confidence 578899999999999999999999999999999999999999999999999999999976543
No 27
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=3.5e-21 Score=125.38 Aligned_cols=64 Identities=31% Similarity=0.518 Sum_probs=60.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
..+.++.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 4567889999999999999999999999999999999999999999999999999999998654
No 28
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=1.5e-21 Score=131.36 Aligned_cols=65 Identities=35% Similarity=0.657 Sum_probs=55.5
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+..++.+|.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+..
T Consensus 23 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 23 NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp --------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 34567789999999999999999999999999999999999999999999999999999999854
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=1.1e-21 Score=126.04 Aligned_cols=63 Identities=52% Similarity=0.906 Sum_probs=60.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
+.++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 568899999999999999999999999999999999999999999999999999999997654
No 30
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=3.4e-21 Score=123.80 Aligned_cols=62 Identities=37% Similarity=0.579 Sum_probs=59.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
+++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 57889999999999999999999999999999999999999999999999999999997654
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=1.9e-21 Score=124.18 Aligned_cols=61 Identities=38% Similarity=0.563 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+.++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHh
Confidence 4688999999999999999999999999999999999999999999999999999998754
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.83 E-value=3.3e-21 Score=127.93 Aligned_cols=64 Identities=38% Similarity=0.609 Sum_probs=54.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
..++.+|.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+..
T Consensus 16 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 16 TNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp --------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 3456789999999999999999999999999999999999999999999999999999999864
No 33
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.83 E-value=5.2e-21 Score=119.94 Aligned_cols=58 Identities=45% Similarity=0.639 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+|.||.||..|+..|+..|..++||+..++..||..+||++.+|++||||||+++|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999874
No 34
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.2e-20 Score=128.59 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=62.6
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC---------------CCccchhhhhhhhhhhHHHhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLD---------------LKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------l~~~~V~vWFqNRRak~rk~~~ 73 (149)
..++.+|.|+.|+..|+.+||.+|..++||+..+++.||..|| |++.+|++||||||+++|+...
T Consensus 3 ~~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 3467789999999999999999999999999999999999999 9999999999999999999876
Q ss_pred hc
Q psy9529 74 TK 75 (149)
Q Consensus 74 ~~ 75 (149)
..
T Consensus 83 ~~ 84 (95)
T 2cuf_A 83 IA 84 (95)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 35
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.9e-20 Score=122.50 Aligned_cols=62 Identities=23% Similarity=0.288 Sum_probs=56.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcC
Q psy9529 15 RSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKK 76 (149)
Q Consensus 15 r~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~ 76 (149)
++|+.||.+|+.+||..|..++||+..++..||..+||++.+|+|||||||+++|+......
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 70 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETKKS 70 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCSSC
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhccc
Confidence 45667999999999999999999999999999999999999999999999999999765433
No 36
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=1.9e-20 Score=121.87 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=57.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 14 RRSRTNFNSWQLEELERAFLA-SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~-~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
++.||.||.+|+.+||..|.. ++||+..++..||..+||++.+|+|||||||+++|+....
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 567899999999999999995 9999999999999999999999999999999999997743
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.82 E-value=8.7e-21 Score=121.40 Aligned_cols=61 Identities=43% Similarity=0.732 Sum_probs=57.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchh
Confidence 7889999999999999999999999999999999999999999999999999999986543
No 38
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=117.44 Aligned_cols=57 Identities=42% Similarity=0.623 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
+++.||.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 39
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-20 Score=123.87 Aligned_cols=62 Identities=23% Similarity=0.314 Sum_probs=57.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
..+.|+.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|+....
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 35568999999999999999999999999999999999999999999999999999986554
No 40
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.82 E-value=7.1e-21 Score=119.57 Aligned_cols=59 Identities=20% Similarity=0.333 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 11 SKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 11 ~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
++.++.||.|+..|+.+|+..|..++||+..++..||..+||++.+|++||||||+++|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 46788999999999999999999999999999999999999999999999999999975
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.1e-20 Score=129.28 Aligned_cols=65 Identities=40% Similarity=0.609 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
.++.++.||.||..|+.+||..|..++||+..++..||..|||++.+|+|||||||+|+|+....
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 45678899999999999999999999999999999999999999999999999999999987653
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.82 E-value=8.5e-21 Score=118.96 Aligned_cols=57 Identities=65% Similarity=1.151 Sum_probs=50.7
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+||.||.+|+.+|+..|..++||+..++..||..+||++.+|++||||||+|+|+..
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 58 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhc
Confidence 589999999999999999999999999999999999999999999999999999864
No 43
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.82 E-value=2.5e-20 Score=120.89 Aligned_cols=60 Identities=28% Similarity=0.432 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 14 RRSRTNFNSWQLEELERAFLA-SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~-~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
.+.||.||..|+.+||..|.. ++||+..++..||..+||++.+|+|||||||+++|+...
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 467899999999999999996 999999999999999999999999999999999999764
No 44
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.81 E-value=1.6e-20 Score=128.27 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=56.1
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
......++.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+..
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 34455678899999999999999999999999999999999999999999999999999999853
No 45
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.81 E-value=2.7e-20 Score=115.27 Aligned_cols=54 Identities=46% Similarity=0.775 Sum_probs=51.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
|.||..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999985
No 46
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=1.2e-19 Score=122.44 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcC
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKK 76 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~ 76 (149)
.||.+|+.+||..|..++||+..++.+||..|||++.+|+|||||||+||++++....
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHhh
Confidence 7999999999999999999999999999999999999999999999999998765443
No 47
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=122.35 Aligned_cols=61 Identities=23% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhcC
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKK 76 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~~ 76 (149)
++..||.+|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+|+......
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 3445999999999999999999999999999999999999999999999999998765543
No 48
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=3.9e-20 Score=121.30 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=53.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
.|+.||.+|+.+|+..|..++||+..++++||..+||++.+|+|||||+|+|+|+..
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 356699999999999999999999999999999999999999999999999999864
No 49
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=4.6e-20 Score=120.11 Aligned_cols=63 Identities=21% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
..++.||.||.+|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 347889999999999999999999999999999999999999999999999999999986543
No 50
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=7.6e-20 Score=118.84 Aligned_cols=63 Identities=17% Similarity=0.271 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
+++.++.|+.|+..|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+++++..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4567889999999999999999976 99999999999999999999999999999999999864
No 51
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=6.8e-20 Score=116.95 Aligned_cols=59 Identities=31% Similarity=0.356 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLA-SHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~-~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
.++++|.||.|+.+|+.+|+.+|+. ++||+...|+.||.++||++++|+|||||+|--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeee
Confidence 3467999999999999999999999 9999999999999999999999999999998753
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=119.31 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhc
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTK 75 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~ 75 (149)
+.++++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||++.+|++||||+|+++++.....
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 4567888999999999999999987 69999999999999999999999999999999999865443
No 53
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=4.5e-20 Score=116.98 Aligned_cols=59 Identities=29% Similarity=0.488 Sum_probs=56.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 12 KRRRSRTNFNSWQLEELERAF---LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F---~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
..++.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||||+|+++|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 357889999999999999999 89999999999999999999999999999999999886
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.79 E-value=2.7e-20 Score=124.79 Aligned_cols=61 Identities=36% Similarity=0.595 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 14 RRSRTNFNSWQLEELERAF---LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F---~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
||.|+.|+..|+.+|+.+| ..++||+..++..||..+||++.+|++||||+|+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999987544
No 55
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.79 E-value=1.5e-19 Score=117.50 Aligned_cols=61 Identities=36% Similarity=0.591 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 13 RRRSRTNFNSWQLEELERAF---LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 13 ~rr~Rt~ft~~ql~~Le~~F---~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
.+|.|+.|+..|+.+|+..| ..++||+..++..||..+||++.+|++||||+|+++|+...
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 36889999999999999999 89999999999999999999999999999999999998654
No 56
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=123.41 Aligned_cols=66 Identities=26% Similarity=0.297 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhc---------------------CCCccchhhhhhhhhhhH
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRL---------------------DLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~l---------------------gl~~~~V~vWFqNRRak~ 68 (149)
.++.||.||.|++.|+.+|+..|..++||+..+|++||..| +|++.+|+|||||||+++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 45678999999999999999999999999999999999999 799999999999999999
Q ss_pred HHhhhhc
Q psy9529 69 RKKEHTK 75 (149)
Q Consensus 69 rk~~~~~ 75 (149)
+++....
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9886554
No 57
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.78 E-value=7.7e-20 Score=133.73 Aligned_cols=64 Identities=28% Similarity=0.412 Sum_probs=55.7
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+..++++|.||.||..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3456778899999999999999999999999999999999999999999999999999999874
No 58
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=1.1e-19 Score=134.75 Aligned_cols=62 Identities=29% Similarity=0.490 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
..++||.||.||..|+.+||..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35788999999999999999999999999999999999999999999999999999999974
No 59
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.77 E-value=1.5e-19 Score=134.60 Aligned_cols=65 Identities=31% Similarity=0.431 Sum_probs=52.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
.+++||.||.||..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccCC
Confidence 46778899999999999999999999999999999999999999999999999999999987643
No 60
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.77 E-value=4e-19 Score=111.20 Aligned_cols=56 Identities=25% Similarity=0.287 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 16 SRTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||||+|+++|+.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 3688999999999999999 9999999999999999999999999999999999863
No 61
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.76 E-value=4.8e-19 Score=129.99 Aligned_cols=62 Identities=31% Similarity=0.471 Sum_probs=59.0
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+++++|.||.|+..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 35678889999999999999999999999999999999999999999999999999999986
No 62
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=2.6e-19 Score=116.40 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 14 RRSRTNFNSWQLEELERAF-LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F-~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
.+.|+.++.+|+.+||..| ..++||+..++..||..+||++.+|+|||||||+|+|+.
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~ 67 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPS 67 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCC
Confidence 4556678899999999999 999999999999999999999999999999999999964
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.76 E-value=7.2e-19 Score=117.92 Aligned_cols=59 Identities=25% Similarity=0.297 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 11 SKRRRSRTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 11 ~k~rr~Rt~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
.++++.|+.|+.+|+.+|+..|.. ++||+..++..||..+||++.+|++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 456777999999999999999999 99999999999999999999999999999999987
No 64
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.75 E-value=4e-19 Score=122.18 Aligned_cols=65 Identities=29% Similarity=0.369 Sum_probs=53.8
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHh------------------cC---CCccchhhhhhhhhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALR------------------LD---LKESRVAVWFQNRRAK 67 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~------------------lg---l~~~~V~vWFqNRRak 67 (149)
..++.+|.||.|+..|+.+||..|..++||+..+|++||.. || |++.+|+|||||||++
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 34677899999999999999999999999999999999999 88 9999999999999999
Q ss_pred HHHhhh
Q psy9529 68 WRKKEH 73 (149)
Q Consensus 68 ~rk~~~ 73 (149)
++++..
T Consensus 85 ~k~k~~ 90 (99)
T 1lfb_A 85 EAFRHK 90 (99)
T ss_dssp TSCCC-
T ss_pred HHHhch
Confidence 877543
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.74 E-value=1.4e-18 Score=115.60 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 14 RRSRTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
++.|+.|+.+|+.+|+.+|.. ++||+..++..||..+||++.+|++||||||+++|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 345667999999999999999 99999999999999999999999999999999999864
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-18 Score=112.39 Aligned_cols=57 Identities=39% Similarity=0.576 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
..+|..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999986543
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=110.47 Aligned_cols=52 Identities=25% Similarity=0.386 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
-|.+|+.+|+..|..++||+..++.+||..+||++.+|++||||||+|+|+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999974
No 68
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.74 E-value=1.2e-18 Score=128.55 Aligned_cols=61 Identities=34% Similarity=0.497 Sum_probs=58.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 11 SKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 11 ~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
++++|.||.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5678899999999999999999999999999999999999999999999999999999973
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=1.7e-18 Score=128.46 Aligned_cols=66 Identities=21% Similarity=0.254 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhh
Q psy9529 9 LASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHT 74 (149)
Q Consensus 9 ~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~ 74 (149)
...+.||.||.||..|+.+|+..|..++||+..++..||..+||++.+|+|||||||+|+|+....
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCCC
Confidence 345678999999999999999999999999999999999999999999999999999999876543
No 70
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.2e-18 Score=108.83 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
..++..|+..||..|..++||+..++..||..+||++.+|+|||||||+|.++
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 34679999999999999999999999999999999999999999999998765
No 71
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.70 E-value=3.4e-18 Score=108.64 Aligned_cols=49 Identities=27% Similarity=0.399 Sum_probs=46.0
Q ss_pred HHHHHHHHHHH-hhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 22 SWQLEELERAF-LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 22 ~~ql~~Le~~F-~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
..|+.+||..| ..++||+..++.+||..|||+++||+|||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 45799999999 57999999999999999999999999999999999885
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=1.3e-16 Score=102.16 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHh---hCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 19 NFNSWQLEELERAFL---ASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~---~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
.|+.+|+.+|+..|. .++||+..++..||..+||++.+|++||||+|+|+++..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 599999999999999 999999999999999999999999999999999999754
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.63 E-value=4.5e-17 Score=124.08 Aligned_cols=61 Identities=30% Similarity=0.366 Sum_probs=53.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC---------------------CCccchhhhhhhhhhhH
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLD---------------------LKESRVAVWFQNRRAKW 68 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------------l~~~~V~vWFqNRRak~ 68 (149)
.++.||.||.|+..|+.+|+..|..++||+..+|++||..|+ |++.+|++||||||+++
T Consensus 112 ~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~ 191 (194)
T 1ic8_A 112 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 191 (194)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHC
T ss_pred cccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhh
Confidence 467789999999999999999999999999999999999999 99999999999999987
Q ss_pred HH
Q psy9529 69 RK 70 (149)
Q Consensus 69 rk 70 (149)
+.
T Consensus 192 k~ 193 (194)
T 1ic8_A 192 AF 193 (194)
T ss_dssp C-
T ss_pred hc
Confidence 64
No 74
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-15 Score=96.72 Aligned_cols=46 Identities=15% Similarity=0.268 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhh
Q psy9529 22 SWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67 (149)
Q Consensus 22 ~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak 67 (149)
.+|+..|+.+|..|++|+..++..||..+||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999984
No 75
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.56 E-value=2.1e-15 Score=116.44 Aligned_cols=59 Identities=32% Similarity=0.402 Sum_probs=53.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC---------------------CCccchhhhhhhhhhhH
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLD---------------------LKESRVAVWFQNRRAKW 68 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lg---------------------l~~~~V~vWFqNRRak~ 68 (149)
.++.||.|+.|++.|+.+|+.+|..++||+..+|++||..+| |++.+|++||+|||+..
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 567789999999999999999999999999999999999987 88999999999999863
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.48 E-value=6.8e-14 Score=94.00 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=53.0
Q ss_pred CCCCHHHHHHHHHHHhh---CCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhhhc
Q psy9529 18 TNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEHTK 75 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~---~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~~~ 75 (149)
-.|+.+++.+|+.+|.. ++||+..++..||..+||++.||++||+|+|.|+++.....
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~~ 70 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLRK 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHHh
Confidence 46899999999999987 89999999999999999999999999999999999865443
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.39 E-value=1.1e-13 Score=113.43 Aligned_cols=56 Identities=20% Similarity=0.295 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
++.++.|+..|+..|+..|..++||+..+|++||..+||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 34577899999999999999999999999999999999999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.83 E-value=1.1e-09 Score=61.75 Aligned_cols=22 Identities=41% Similarity=1.031 Sum_probs=19.0
Q ss_pred cchhhhhhhhhhhHHHhhhhcC
Q psy9529 55 SRVAVWFQNRRAKWRKKEHTKK 76 (149)
Q Consensus 55 ~~V~vWFqNRRak~rk~~~~~~ 76 (149)
+||+|||||||+|||+......
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~~ 22 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFNDA 22 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHHT
T ss_pred CCceeccHHHHHHHHHHhHHHH
Confidence 5899999999999999876643
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.44 E-value=0.011 Score=37.36 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
.++.-...|+.+|...+.........|+.+..|+..+|+-||-.
T Consensus 13 ~~p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 13 PPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34445689999999999999999999999999999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=85.59 E-value=0.75 Score=27.04 Aligned_cols=46 Identities=13% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
|..|+.++.......+... .........+|..+|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4569999887775555443 221112568999999999999999753
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=84.40 E-value=3 Score=26.34 Aligned_cols=48 Identities=13% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 10 ~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
..++++.+..|+.++....-..+... . ...++|..+|++...|..|..
T Consensus 13 ~~~~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 13 GTKGKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSCCSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred hccCCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34445567789998866555556433 2 256789999999999999974
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=82.73 E-value=1.6 Score=29.32 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhh
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak 67 (149)
.|..||.++...+-..+..+.... ..++|..+|++...|..|..++...
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 567899999988877775555443 3368999999999999999776553
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=77.73 E-value=2.8 Score=26.57 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~ 72 (149)
++..+..+|...|.... .-.++|..+|++...|+.+...-+.+.++.-
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56677777776554332 4678899999999999999987777766543
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=76.08 E-value=4.2 Score=21.62 Aligned_cols=40 Identities=8% Similarity=0.170 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
.++..+...+...+... + ...++|..+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 47777775555555433 2 3567899999999999999853
No 85
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=75.24 E-value=2 Score=23.45 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhh
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNR 64 (149)
.++.++...+...+... . ...++|..+|++...|..|+...
T Consensus 5 ~~~~~~~~~i~~l~~~g-~----s~~~ia~~lgvs~~Tv~r~l~~~ 45 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG-H----PRQQLAIIFGIGVSTLYRYFPAS 45 (52)
T ss_dssp SSCTTHHHHHHHHHHTT-C----CHHHHHHTTSCCHHHHHHHSCTT
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCCCHHHHHHHHHHc
Confidence 36666666555555433 2 35678999999999999998643
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.32 E-value=3.8 Score=24.06 Aligned_cols=47 Identities=13% Similarity=-0.048 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+++.+..++...|.... .-.++|..+|++...|..+...-+.+.++
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 477888888888764432 35688999999999999998766665554
No 87
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=70.39 E-value=4.4 Score=25.22 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=35.3
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
.-..+++.+..+|..++. .+ .-.++|..+|++...|+.+..+-+.|.+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQ--GL----PNKMIARRLDITESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 345689999999988532 22 4678899999999999998875555443
No 88
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=68.80 E-value=6 Score=25.10 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHhhC-CCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 17 RTNFNSWQLEELERAFLAS-HYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~-~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
|..|+.++....-..+... .+ ....+|..+|++...|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHH
Confidence 3568998876665555332 22 366889999999999999964
No 89
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=65.80 E-value=8 Score=26.75 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhCCCCCHHHHHHHH-Hhc--CCCccchhhhhhh
Q psy9529 14 RRSRTNFNSWQLEELERAF-LASHYPDVFMREALA-LRL--DLKESRVAVWFQN 63 (149)
Q Consensus 14 rr~Rt~ft~~ql~~Le~~F-~~~~~p~~~~r~~LA-~~l--gl~~~~V~vWFqN 63 (149)
++.|..+|.+|...+-.++ ..++-.+..+....| ..+ +++...|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5678899999999999999 666655443333322 166 7888999999866
No 90
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=64.94 E-value=8.1 Score=23.15 Aligned_cols=50 Identities=8% Similarity=-0.043 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
.+++.+..++...|..... ....-.++|..+|++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888852100 0113568899999999999999866555554
No 91
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=64.79 E-value=8.2 Score=25.78 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
.+++.+..++...|.... .-.++|..+|++...|+.|...-+.+.++.
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 478888888887765442 357889999999999999998777666653
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=61.55 E-value=8.8 Score=25.01 Aligned_cols=45 Identities=11% Similarity=0.012 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhh
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak 67 (149)
...+++.+..+|...+.-- .-.++|..+|+++..|+.+..+-+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 4569999999998865432 24789999999999999988754444
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=60.44 E-value=8.4 Score=24.59 Aligned_cols=46 Identities=17% Similarity=0.042 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+++.+..+|..++..- ...++|..+|++...|+.+..+-+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 58899999998864332 24789999999999999988766655543
No 94
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=60.34 E-value=9.4 Score=25.65 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+++.+..++. .|-.. ..-.++|..+|++...|+.+...-+.+.|+.
T Consensus 110 L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 110 FSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp SCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666666 33222 2467899999999999999988766666654
No 95
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.94 E-value=6.6 Score=23.22 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+++.+..+|...|..+.+-. ..-.++|..+|++...|+.+...-+.+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 378888899988884321111 235678999999999999987655555443
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=58.99 E-value=12 Score=24.82 Aligned_cols=48 Identities=13% Similarity=0.002 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
.+++.+..++...|...- .-.++|..+|++...|+.+...-+.+.+..
T Consensus 25 ~L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~ 72 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDY 72 (113)
T ss_dssp GSCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 367777777777654442 457889999999999999988766666653
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=57.04 E-value=9.7 Score=23.77 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
.+++.+..+|...|-...- ....-.++|..+|++...|+.+...-+.+.+
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr 67 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLR 67 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHB
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3678888888888752100 0113667899999999999998865554444
No 98
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=56.79 E-value=13 Score=23.88 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHH-hhC-CCCC-HHHHHHHHHhcCCCccchhhhhh
Q psy9529 17 RTNFNSWQLEELERAF-LAS-HYPD-VFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F-~~~-~~p~-~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
+..|+.++....-..+ ... .+++ ......+|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 3469998876554444 322 1333 24567899999999999999964
No 99
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=56.43 E-value=13 Score=21.73 Aligned_cols=47 Identities=17% Similarity=0.118 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
-..+++.+..+|..++ ..+ ...++|..+|++...|..+..+-+.+.+
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~ 55 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLG 55 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHC
Confidence 3458999999998842 222 3567899999999999988875454443
No 100
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=53.57 E-value=10 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
+++.+..+|..+| ..+ ...++|..+|++...|+.+..+-+.|.+
T Consensus 17 L~~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 17 LSERERQVLSAVV--AGL----PNKSIAYDLDISPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HCHHHHHHHHHHT--TTC----CHHHHHHHTTSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHc
Confidence 6777888887743 222 3468999999999999998876555544
No 101
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=52.52 E-value=16 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.136 Sum_probs=23.7
Q ss_pred HHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 43 REALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
-.++|..+|++...|+.+...-|.+.|+.
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~ 187 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNK 187 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999988666666653
No 102
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=52.24 E-value=16 Score=26.21 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+++.+..+|...|... ....++|..+|++...|+.+...-+.+.|+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 5566666666655332 2457889999999999999987666666553
No 103
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=52.05 E-value=30 Score=23.13 Aligned_cols=53 Identities=8% Similarity=-0.009 Sum_probs=35.9
Q ss_pred CcCCCCCCCCCCCCHHHHHHHHHHHhhCCCCCHH-HHHHHHHhcCCCccchhhhh
Q psy9529 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVF-MREALALRLDLKESRVAVWF 61 (149)
Q Consensus 8 ~~~~k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~-~r~~LA~~lgl~~~~V~vWF 61 (149)
....++......-|.+|+..-+..+..+. |+.. ....|+..+|+++..+..=.
T Consensus 8 ~~~~~~~~~~~~aTaeQ~rLAq~i~~~~d-~d~eekVk~L~EmtG~seeeAr~AL 61 (104)
T 1wj7_A 8 NQNQTQHKQRPQATAEQIRLAQMISDHND-ADFEEKVKQLIDITGKNQDECVIAL 61 (104)
T ss_dssp SCCCCTTCCSSSSSHHHHHHHHHHHHSCC-HHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CCccCccccccccCHHHHHHHHHHhcCCc-ccHHHHHHHHHHhhCCCHHHHHHHH
Confidence 33444555667889999999888876643 5543 44567777799887665543
No 104
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=47.75 E-value=11 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
..+++.+..+|..++..- .-.++|..+|++...|+.+..+-+.|.+
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~ 73 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLE 73 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 357889999998854322 2457899999999999998875555443
No 105
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=47.74 E-value=48 Score=22.59 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
..++.++...+...+... + ...++|..+|++...|..|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 468888877776666543 2 3557899999999999999864
No 106
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=45.94 E-value=16 Score=25.07 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHh
Q psy9529 20 FNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71 (149)
Q Consensus 20 ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~ 71 (149)
+++.+..+|...|- ....-.++|..+|+++..|+.+...-|.+.++.
T Consensus 94 Lp~~~r~vl~L~~~-----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 94 MTPLSRQALLLTAM-----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp SCTTHHHHHTTTSS-----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 56666666644322 223467899999999999999997666666553
No 107
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=45.75 E-value=29 Score=22.79 Aligned_cols=41 Identities=7% Similarity=0.178 Sum_probs=31.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
..++.++...+...+... + ...++|..+|++...|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 458888887777777543 2 3567899999999999999964
No 108
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=45.64 E-value=8.7 Score=26.56 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+..-...|....| . .....||...|++...|-.+|.|+-.
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 345555666888888 5 78889999999999999999998743
No 109
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=45.62 E-value=19 Score=20.02 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=27.3
Q ss_pred CCC--HHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 19 NFN--SWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 19 ~ft--~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
.++ +.+...+...+... + ...++|..+|++...|..|+.
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 66665555555433 2 356789999999999999974
No 110
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=44.19 E-value=26 Score=20.76 Aligned_cols=41 Identities=0% Similarity=-0.047 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..++.+.+..+......+ ..+||..+|++...|..|-.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357888888877655443 57899999999999999976543
No 111
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=42.10 E-value=58 Score=21.99 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCcc
Q psy9529 16 SRTNFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKES 55 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~ 55 (149)
+|..+|.+|+..|...|.. +.+.+..+...+...+|....
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 50 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPP 50 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCcc
Confidence 3567999999999999963 458899988888888887654
No 112
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.86 E-value=37 Score=21.40 Aligned_cols=45 Identities=9% Similarity=0.064 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 16 SRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-..+|..+..+|...+.- + ...++|..+|++...|+....+=..
T Consensus 26 ~~~~Lt~rE~~Vl~l~~~G--~----s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVEKG--F----TNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp ---CCCHHHHHHHHHHHTT--C----CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 3456999999999887732 2 3678999999999999987765433
No 113
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=40.31 E-value=51 Score=20.85 Aligned_cols=47 Identities=19% Similarity=0.177 Sum_probs=36.9
Q ss_pred CCCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCC--Cccchhhhhh
Q psy9529 16 SRTNFNSWQLEELERAFLA-----SHYPDVFMREALALRLDL--KESRVAVWFQ 62 (149)
Q Consensus 16 ~Rt~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl--~~~~V~vWFq 62 (149)
....++.+++..|...|.. +.+.+..+...+...+|. +...|..+|+
T Consensus 26 ~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 26 RPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp SCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3456899999999999963 458999998888888774 6677877774
No 114
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=38.53 E-value=12 Score=21.13 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|..++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~ 38 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNK 38 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5679999999999999998754
No 115
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=38.39 E-value=12 Score=22.49 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+.+
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998765
No 116
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=37.30 E-value=13 Score=21.11 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 117
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=37.21 E-value=36 Score=21.64 Aligned_cols=40 Identities=5% Similarity=-0.061 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
.++.++...+...+.. .+ ...++|..+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~----s~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI----RPCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 5888877777666653 32 2457899999999999999863
No 118
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=36.92 E-value=32 Score=21.24 Aligned_cols=44 Identities=7% Similarity=0.000 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 19 NFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
.++.++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 2 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 2 KITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4678899999999864 4467888887777788888777766654
No 119
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.45 E-value=10 Score=26.24 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.7
Q ss_pred HHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 44 EALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 44 ~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.++|..+|++...|+.+...-|.+.|+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356778899999999998766666554
No 120
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=35.57 E-value=14 Score=21.22 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~ 41 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 121
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=34.87 E-value=38 Score=22.37 Aligned_cols=22 Identities=0% Similarity=-0.088 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|-.++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~ 108 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGN 108 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 4567888888888888887653
No 122
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=34.71 E-value=24 Score=21.50 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=36.0
Q ss_pred CCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 17 RTNFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
-..++.++...|...|.. +.+.+..+...+...+|++...|..+|.
T Consensus 18 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 18 GADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp -CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 345788889999999853 4578888888888889988888887774
No 123
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.60 E-value=13 Score=26.07 Aligned_cols=40 Identities=8% Similarity=0.167 Sum_probs=30.4
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
+..-...|.... .......||...|++...|-.+|.|+-.
T Consensus 26 l~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 26 FTAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 334444576666 5566788999999999999999998743
No 124
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.59 E-value=18 Score=20.48 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCccchhhhhhhhhhhHH
Q psy9529 43 REALALRLDLKESRVAVWFQNRRAKWR 69 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRRak~r 69 (149)
-.++|..+|+++..|+.+..+=+.|.+
T Consensus 16 ~~eIA~~l~is~~tV~~~~~~~~~kl~ 42 (61)
T 2jpc_A 16 NHGISEKLHISIKTVETHRMNMMRKLQ 42 (61)
T ss_dssp SHHHHHHTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHC
Confidence 357899999999999998876555543
No 125
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=34.06 E-value=16 Score=21.33 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999987643
No 126
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=33.36 E-value=48 Score=24.22 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.6
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
...+|+.+..+|.-.+.-. .-.++|..+|+++..|+....|=+.|.
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl 218 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKL 218 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 3468999999987754322 357889999999999999887655553
No 127
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=33.01 E-value=18 Score=21.12 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|.-|..++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~ 45 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTND 45 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5679999999999999998764
No 128
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=32.56 E-value=42 Score=23.29 Aligned_cols=43 Identities=7% Similarity=0.155 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
+......|....|-.. ....||...|++...|-.+|.|+-.=.
T Consensus 34 l~aa~~lf~~~G~~~~-tv~~IA~~agvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 34 VNAAIEVLAREGARGL-TFRAVDVEANVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHTCTTTC-CHHHHHHHSSSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHhChhhc-cHHHHHHHcCCCcchHHHhCCCHHHHH
Confidence 4445556878776543 466789999999999999999975443
No 129
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=32.54 E-value=24 Score=24.40 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
+..-...|....| . .....||+..|++...|-.+|.|+-.
T Consensus 19 l~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 19 LEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 4444556888888 5 57888999999999999999999743
No 130
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=32.39 E-value=41 Score=20.85 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCccchhhhhh
Q psy9529 19 NFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKESRVAVWFQ 62 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~~V~vWFq 62 (149)
.++.++...+...|.. +.+.+..+...+...+|++...+..+|.
T Consensus 3 ~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 3 VVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp SSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3677888889888853 4578888888877888988877777664
No 131
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=32.22 E-value=31 Score=23.82 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+......|....|-... ...||+..|++...+-.+|.|+-.
T Consensus 18 ~Il~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 18 TIIERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHH
Confidence 3345555668888776544 667899999999999999998743
No 132
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=31.84 E-value=18 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSET 43 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987643
No 133
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=31.49 E-value=19 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCccchhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqN 63 (149)
...||+.||++..-|--|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 678999999999999999864
No 134
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=31.42 E-value=19 Score=21.08 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
...||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGD 47 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCCCHHHHHHHHCCC
Confidence 5679999999999999998654
No 135
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=31.37 E-value=49 Score=22.18 Aligned_cols=41 Identities=5% Similarity=-0.052 Sum_probs=30.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhh
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqN 63 (149)
..++.++....-..+.. .+ ...++|..+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~~-G~----s~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAHQ-GV----RPCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 45888887777666653 32 2457899999999999999853
No 136
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.94 E-value=14 Score=25.52 Aligned_cols=23 Identities=13% Similarity=0.445 Sum_probs=19.9
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
...+|..+|++..+++.|+-..|
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHhCCCcccEEEEEeecC
Confidence 56789999999999999997655
No 137
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=30.91 E-value=19 Score=20.49 Aligned_cols=23 Identities=9% Similarity=0.176 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~ 39 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999986543
No 138
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.76 E-value=34 Score=23.19 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHHhhh
Q psy9529 26 EELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73 (149)
Q Consensus 26 ~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk~~~ 73 (149)
.+++-.|+.|+||...--.. | =.|||.+||.+..
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQr 49 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHH
Confidence 34555688899997641110 1 1489999987653
No 139
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=29.92 E-value=31 Score=25.34 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=33.4
Q ss_pred CCCCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 17 RTNFNSWQ-LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 17 Rt~ft~~q-l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
|...+.++ +..-...|....|-... ...||..+|++...|-.+|.|+-.
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAETFS-VRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCCCC-HHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCcccCC-HHHHHHHhCcCHHHHHHHcCCHHH
Confidence 44455543 34455557776665544 566799999999999999999754
No 140
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=29.43 E-value=26 Score=24.06 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+......|....|-... ...||...|++...|-..|.|+-.
T Consensus 20 ~Il~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (213)
T 2qtq_A 20 LLLQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAG 62 (213)
T ss_dssp HHHHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHH
Confidence 3345555667777765544 567799999999999999999743
No 141
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=29.02 E-value=21 Score=20.86 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
...||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 142
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=28.69 E-value=57 Score=24.24 Aligned_cols=47 Identities=17% Similarity=0.020 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
..+++.+..+|...+ ..+ .-.++|..+|+++..|++...+-+.|.+.
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~ 242 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSV 242 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 358899999888864 222 36788999999999999988766655543
No 143
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=28.64 E-value=22 Score=20.47 Aligned_cols=22 Identities=27% Similarity=0.194 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|..++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~ 50 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 5679999999999999998764
No 144
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=28.61 E-value=19 Score=20.89 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=17.6
Q ss_pred HHHHHHhcCCCccchhhhh
Q psy9529 43 REALALRLDLKESRVAVWF 61 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWF 61 (149)
...||..+|++...|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 145
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=28.61 E-value=60 Score=23.63 Aligned_cols=46 Identities=13% Similarity=0.050 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
...+|+.+..+|.-.+. . + .-.++|..+|+++..|+....|=+.|.
T Consensus 171 ~~~Lt~~e~~vl~~~~~-g-~----s~~eIa~~l~is~~tV~~~~~~~~~kl 216 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV-G-K----TMEEIADVEGVKYNSVRVKLREAMKRF 216 (234)
T ss_dssp CCCCCHHHHHHHHHHTT-T-C----CHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-C-C----CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 34689999988876432 2 1 357889999999999999887655543
No 146
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=27.25 E-value=24 Score=21.91 Aligned_cols=23 Identities=9% Similarity=0.263 Sum_probs=20.2
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 57799999999999999998764
No 147
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=27.11 E-value=74 Score=18.89 Aligned_cols=24 Identities=8% Similarity=-0.026 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCCccchhhhhhhhh
Q psy9529 42 MREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 42 ~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
...+||..+|++...|..|..+++
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCC
Confidence 356899999999999999987654
No 148
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=26.92 E-value=1.3e+02 Score=20.26 Aligned_cols=47 Identities=6% Similarity=-0.145 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCHHHHHH-HHHh------cCCCccchhhhhhh
Q psy9529 17 RTNFNSWQLEELERAFLASHYPDVFMREA-LALR------LDLKESRVAVWFQN 63 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~-LA~~------lgl~~~~V~vWFqN 63 (149)
+..++.++...+...+..++..+..+... |... ..++...|..|+..
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 45678888888888887776666554433 3222 24677888888754
No 149
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.71 E-value=80 Score=20.31 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhHHH
Q psy9529 19 NFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70 (149)
Q Consensus 19 ~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~rk 70 (149)
.+++.+..++...|..+.+ ....-.++|..+|++...|+.....-..+.|.
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 3667788888877753211 11246788999999999999887655555554
No 150
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=26.28 E-value=27 Score=21.13 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998765
No 151
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=26.13 E-value=13 Score=17.27 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=10.3
Q ss_pred ccchhhhhhhhhhh
Q psy9529 54 ESRVAVWFQNRRAK 67 (149)
Q Consensus 54 ~~~V~vWFqNRRak 67 (149)
...|.+-++|||.-
T Consensus 3 kkpvpiiycnrrtg 16 (21)
T 8tfv_A 3 KKPVPIIYCNRRTG 16 (26)
T ss_dssp CCCCCCEEEEGGGT
T ss_pred CCcccEEEEcCccc
Confidence 45677888998863
No 152
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=25.75 E-value=57 Score=22.57 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHHHHHhh-----CCCCCHHHHHHHHHhcCCCcc
Q psy9529 17 RTNFNSWQLEELERAFLA-----SHYPDVFMREALALRLDLKES 55 (149)
Q Consensus 17 Rt~ft~~ql~~Le~~F~~-----~~~p~~~~r~~LA~~lgl~~~ 55 (149)
++.||.+|+..|+..|.. +.+.+..+...+...+|+...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~ 45 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPS 45 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChh
Confidence 467999999999999963 457888888888888886543
No 153
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=25.61 E-value=30 Score=20.75 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 154
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=25.32 E-value=27 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 24 QLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 24 ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
-+......|....|-.. ....||+..|++...+-.+|.++-.
T Consensus 36 Il~aa~~l~~~~G~~~~-tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 36 IIKVATELFREKGYYAT-SLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHHTCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHHcCcccC-cHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 33455556777776544 4667899999999999999999754
No 155
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=25.02 E-value=27 Score=24.64 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhh
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
+..-...|....|-.. ....||...|++...|-.+|.|+-
T Consensus 41 l~aA~~lf~~~G~~~~-t~~~IA~~AGvs~~tlY~~F~sKe 80 (221)
T 3g7r_A 41 LGTATRIFYAEGIHSV-GIDRITAEAQVTRATLYRHFSGKD 80 (221)
T ss_dssp HHHHHHHHHHHCSTTS-CHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCCHHHHHHHCCCHH
Confidence 3344445777776544 366789999999999999999974
No 156
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=24.32 E-value=30 Score=20.52 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|..++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~ 47 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFE 47 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHcCC
Confidence 5679999999999999998654
No 157
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=24.30 E-value=29 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.179 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999987643
No 158
>4h79_A Crispr-associated protein, CSE2 family; cascade, CASB, crispr-assoicated protein, nucleic AC binding protein, DNA binding protein; 1.90A {Thermobifida fusca}
Probab=24.06 E-value=89 Score=23.21 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhCCCccchHHHHHHHH
Q psy9529 111 KLMKSLERQQRKLAAKGVTVDLETLKREWE 140 (149)
Q Consensus 111 ~~~~a~e~~~~~l~~~~~~~~~~~l~~~~~ 140 (149)
.+...|-+--..|.+.+++||++.|..++.
T Consensus 146 ~l~~~LR~lv~lLr~~~i~~Dy~~La~DL~ 175 (216)
T 4h79_A 146 ALAQRLREIVTLLRRDAIPLDYGLLADQLY 175 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 577788888889999999999999988764
No 159
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=23.66 E-value=17 Score=26.05 Aligned_cols=26 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 41 FMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 41 ~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
....++|..+|++...|+.+...-+.
T Consensus 215 ~s~~EIA~~lgis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 215 QTQSEVASRLGISQVQMSRLEKKILQ 240 (243)
T ss_dssp --------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678999999999999988764433
No 160
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=23.35 E-value=93 Score=21.16 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhh----CCCCCHHHHHHHHHhcCCCccchhhhhhhhh
Q psy9529 20 FNSWQLEELERAFLA----SHYPDVFMREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 20 ft~~ql~~Le~~F~~----~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
+|..++..|-..+.. +.+|+. ..||..+|++...|....++=-
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHHH
Confidence 566677777666553 456765 4699999999999999887543
No 161
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=23.19 E-value=31 Score=20.50 Aligned_cols=22 Identities=27% Similarity=0.166 Sum_probs=18.7
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|-.++
T Consensus 30 q~elA~~~gis~~~is~~e~g~ 51 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAE 51 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHCCC
Confidence 4678999999999999998654
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=23.12 E-value=30 Score=20.40 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCccchhhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
..+||..+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999987654
No 163
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.90 E-value=43 Score=23.16 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
+......|....|-.. ....||...|++...|-.+|.|+-.
T Consensus 36 l~aA~~l~~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sK~~ 76 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSV-GVDEILKAARVPKGSFYHYFRNKAD 76 (222)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCCCcC-cHHHHHHHhCCCcchhhhhCCCHHH
Confidence 4444555777776544 4667899999999999999999743
No 164
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=22.88 E-value=37 Score=23.24 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=31.9
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
+......|....|-.. ....||...|++...|-.+|.|+-.=.
T Consensus 18 l~aA~~lf~e~G~~~~-t~~~IA~~agvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 18 LSASYELLLESGFKAV-TVDKIAERAKVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHcCcccc-cHHHHHHHcCCCHHHHHHHCCCHHHHH
Confidence 3444455777776544 466789999999999999999975544
No 165
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=22.84 E-value=38 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHHHHHhcCCCccchhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQN 63 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqN 63 (149)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 457899999999999999753
No 166
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=22.83 E-value=42 Score=22.96 Aligned_cols=41 Identities=7% Similarity=0.063 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhh
Q psy9529 24 QLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 24 ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
-+......|....|-.. ....||...|++...|-..|.|+-
T Consensus 22 Il~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 22 ISTVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHH
Confidence 34455555777776544 466789999999999999999974
No 167
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=22.46 E-value=50 Score=22.85 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+..-...|....|-.. ....||...|++...|-..|.|+-.
T Consensus 15 ~Il~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~ 57 (202)
T 2i10_A 15 VALQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRD 57 (202)
T ss_dssp HHHHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHH
T ss_pred HHHHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHH
Confidence 345555666888777644 3667899999999999999988743
No 168
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.14 E-value=27 Score=23.62 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+......|....|-... ...||...|++...|-..|.|+-.
T Consensus 14 ~Il~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 14 HLLDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHH
Confidence 3445556668777765444 567799999999999999999854
No 169
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=21.81 E-value=66 Score=23.36 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=34.1
Q ss_pred CCCCCCCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhh
Q psy9529 14 RRSRTNFNSWQ-LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67 (149)
Q Consensus 14 rr~Rt~ft~~q-l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak 67 (149)
++.+...+.++ +..-...|....|-... ...||..+|++...|-..|.|+-.=
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~~s-~~~IA~~aGvs~~tlY~hF~~K~~L 63 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERGLT-FRALAERLATGPGAIYWHITGKAEL 63 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTTCC-HHHHHHHHTSCGGGGGGTCCCHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcccCC-HHHHHHHHCCChHHHHHhcCCHHHH
Confidence 34444555543 34455667777765544 5677999999999999999997543
No 170
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=21.70 E-value=24 Score=24.24 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhh
Q psy9529 25 LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 25 l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
+..-...|....| . .....||+..|++...|-..|.|+-
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~ 60 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRW 60 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHH
Confidence 4455556888888 5 5788899999999999999999874
No 171
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=21.45 E-value=31 Score=24.70 Aligned_cols=53 Identities=19% Similarity=0.217 Sum_probs=34.3
Q ss_pred CCCCCCCHHH-HHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 15 RSRTNFNSWQ-LEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 15 r~Rt~ft~~q-l~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
+.|...+.+. +..-...|....|-.. ....||..+|++...|-..|.|+-.=.
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEVGLDGV-STRRLAKRLGVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHHCGGGC-CHHHHHHHHTSCTHHHHTTCSSHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCCChhHHHHHcCCHHHHH
Confidence 3444555543 3455556777665433 466789999999999999999875443
No 172
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=21.20 E-value=1.2e+02 Score=22.65 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
..+|+.+..+|.-...-. .-.++|..||+++..|+....|=+.|.
T Consensus 196 ~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl 240 (265)
T 3qp6_A 196 MPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKL 240 (265)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHh
Confidence 568999999998775322 367889999999999999887665553
No 173
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=20.97 E-value=37 Score=20.63 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|..++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~ 54 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGI 54 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcCC
Confidence 5779999999999999998764
No 174
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=20.77 E-value=36 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.357 Sum_probs=16.6
Q ss_pred HHHHHHhcCCCccchhhhh
Q psy9529 43 REALALRLDLKESRVAVWF 61 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWF 61 (149)
..++|+.+|++...|+.|-
T Consensus 8 i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWE 26 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHH
Confidence 4578999999999999994
No 175
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=20.53 E-value=39 Score=22.82 Aligned_cols=42 Identities=14% Similarity=0.075 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhh
Q psy9529 23 WQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66 (149)
Q Consensus 23 ~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRa 66 (149)
.-+..-...|....|- .....||...|++...|-..|.|+-.
T Consensus 13 ~Il~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~ 54 (190)
T 3jsj_A 13 RLLEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDE 54 (190)
T ss_dssp HHHHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHH
T ss_pred HHHHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 4455566668888777 66788899999999999999999853
No 176
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=20.41 E-value=39 Score=20.05 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=18.8
Q ss_pred HHHHHHhcCCCccchhhhhhhh
Q psy9529 43 REALALRLDLKESRVAVWFQNR 64 (149)
Q Consensus 43 r~~LA~~lgl~~~~V~vWFqNR 64 (149)
..+||..+|++...|..|-.++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~ 48 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNS 48 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTC
T ss_pred HHHHHHHhCcCHHHHHHHHCCC
Confidence 5678999999999999998664
No 177
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=20.24 E-value=39 Score=21.23 Aligned_cols=24 Identities=17% Similarity=0.119 Sum_probs=20.3
Q ss_pred HHHHHHHhcCCCccchhhhhhhhh
Q psy9529 42 MREALALRLDLKESRVAVWFQNRR 65 (149)
Q Consensus 42 ~r~~LA~~lgl~~~~V~vWFqNRR 65 (149)
...+||..+|++...|..|..+++
T Consensus 39 Tq~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 39 KKGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 367899999999999999987754
No 178
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.11 E-value=1.4e+02 Score=17.23 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=31.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcC-CCc-cchhhhhhhhh
Q psy9529 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLD-LKE-SRVAVWFQNRR 65 (149)
Q Consensus 12 k~rr~Rt~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lg-l~~-~~V~vWFqNRR 65 (149)
+.+.....+|++....++..|..-+ . .=..||..++ -+. ..|..|+.+++
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~g--k--~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHP--K--NFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHST--T--CHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhC--C--CHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 4456677899999999999998754 2 2234455554 222 34556766543
No 179
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=20.11 E-value=68 Score=22.76 Aligned_cols=45 Identities=18% Similarity=0.102 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCccchhhhhhhhhhhH
Q psy9529 18 TNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68 (149)
Q Consensus 18 t~ft~~ql~~Le~~F~~~~~p~~~~r~~LA~~lgl~~~~V~vWFqNRRak~ 68 (149)
..+|+.+..+|...... ....+||..++++...|++...|=+.|.
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL 192 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKL 192 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 45888888888766543 1367899999999999999887665553
Done!