RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy9529
(149 letters)
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 84.1 bits (209), Expect = 1e-22
Identities = 32/57 (56%), Positives = 38/57 (66%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
RR RT F QLEELE+ F + YP RE LA +L L E +V VWFQNRRAKW++
Sbjct: 1 RRKRTTFTPEQLEELEKEFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 73.0 bits (180), Expect = 2e-18
Identities = 31/59 (52%), Positives = 37/59 (62%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72
RR RT F QLEELE+ F + YP RE LA L L E +V +WFQNRRAK ++ E
Sbjct: 1 RRKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 71.5 bits (176), Expect = 1e-17
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
+RR RT+F QLEELE+ F + YP RE LA +L L E +V VWFQNRRAKW+
Sbjct: 1 KRRKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 51.7 bits (124), Expect = 4e-09
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 6 SDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65
D +S + R QL LER F + YP R L+L L++ V +WFQN+R
Sbjct: 44 KQDGSSPPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKR 103
Query: 66 AKWRKKEHTKK 76
AK +KK K
Sbjct: 104 AKEKKKRSGKV 114
>gnl|CDD|107364 cd06369, PBP1_GC_C_enterotoxin_receptor, Ligand-binding domain of
the membrane guanylyl cyclase C. Ligand-binding domain
of the membrane guanylyl cyclase C (GC-C or StaR). StaR
is a key receptor for the STa (Escherichia coli Heat
Stable enterotoxin), a potent stimulant of intestinal
chloride and bicarbonate secretion that cause acute
secretory diarrhea. The catalytic domain of the
STa/guanylin receptor type membrane GC is highly similar
to those of the natriuretic peptide receptor (NPR) type
and sensory organ-specific type membrane GCs (GC-D, GC-E
and GC-F). The GC-C receptor is mainly expressed in the
intestine of most vertebrates, but is also found in the
kidney and other organs. Moreover, GC-C is activated by
guanylin and uroguanylin, endogenous peptide ligands
synthesized in the intestine and kidney. Consequently,
the receptor activation results in increased cGMP levels
and phosphorylation of the CFTR chloride channel and
secretion.
Length = 380
Score = 28.5 bits (64), Expect = 1.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 97 AEELKRKERARRQKKLMKSLERQQRK 122
+ LK KE R +++L K L + RK
Sbjct: 183 SSALKFKELLRTEEELQKLLTDKNRK 208
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 27.8 bits (62), Expect = 2.0
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 41 FMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEEL 100
RE LR L + + W + + A+ K+ T K A +A
Sbjct: 118 KEREEAELRQRLAKEKYEEWCRQK-AQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVS 176
Query: 101 KRKERARRQKKLMKSLERQQRK 122
+ + + R Q+ +K L++QQ+K
Sbjct: 177 QEEAKKRLQEWELKKLKQQQQK 198
>gnl|CDD|234579 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 27.4 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 12/36 (33%)
Query: 104 ERA-RRQKKLMKSLERQQRKLAAKGVTVDLETLKRE 138
ERA RR K+L AKG++VD E L E
Sbjct: 152 ERAERRYKELQ-----------AKGISVDFEDLLAE 176
>gnl|CDD|179469 PRK02755, truB, tRNA pseudouridine synthase B; Provisional.
Length = 295
Score = 27.7 bits (62), Expect = 2.6
Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 9 LASKRRRSRTNF---NSWQLEELERAFLASHYPDVFMREALAL--RLDLKESRVAVWFQN 63
LA+ RR F S L ELE A +P + AL R+ L W
Sbjct: 191 LAALRRTQSLGFHLAQSLPLPELENQLQAGTFPLLPPDLALQHLPRVQLSAEEAQRWCCG 250
Query: 64 RR 65
+R
Sbjct: 251 QR 252
>gnl|CDD|237905 PRK15083, PRK15083, PTS system mannitol-specific transporter
subunit IICBA; Provisional.
Length = 639
Score = 27.7 bits (62), Expect = 2.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 104 ERARRQKKLMKSLERQQRKLAAKGVTVDLETLKR 137
E A R+ + MK+ + LAA VT DL +++
Sbjct: 347 EAATRRMQDMKAESKGASPLAAGDVTNDLSHVRK 380
>gnl|CDD|236353 PRK08939, PRK08939, primosomal protein DnaI; Reviewed.
Length = 306
Score = 26.4 bits (59), Expect = 5.9
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 96 PAEELKRKERARRQKKLMKSLERQQRKLAAKGVTVDLETLKR 137
P E + + KK ++S+ + L A +DL+ R
Sbjct: 95 PTPEKIEADEEKAIKKRIQSIYMPKDLLQASLADIDLDDRDR 136
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 26.2 bits (58), Expect = 6.0
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 104 ERARRQKKLMKSLERQQRKLAAKGVTVDLETLKRE 138
E+ + +K+MK +++ R+ G L+ L+ +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEK 106
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 26.5 bits (59), Expect = 6.5
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 97 AEELKRKERARRQKKLMKSLERQ---QRKLAAKGVTVDLETLKRE 138
AE + + + ++ ++ + + +RKL KG+ LE L+ E
Sbjct: 158 AELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELE 202
>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional.
Length = 443
Score = 26.7 bits (59), Expect = 6.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
Query: 85 AHPVTCSGDPIPA-------EELKRKERARRQKKL----MKSLERQQRK 122
AH T SG+P+ + EE++ K +R +KL K LE ++K
Sbjct: 298 AHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKK 346
>gnl|CDD|171774 PRK12855, PRK12855, hypothetical protein; Provisional.
Length = 103
Score = 25.4 bits (55), Expect = 7.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 97 AEELKRKERARRQKKLMKSLERQQRKLAAKGVTVDLETLK 136
A E K KE + MK+L RQ+ A G+ VD E ++
Sbjct: 49 AYESKLKEARDIAMEEMKTLARQKNANAIVGIDVDYEVVR 88
>gnl|CDD|214889 smart00892, Endonuclease_NS, DNA/RNA non-specific endonuclease. A
family of bacterial and eukaryotic endonucleases share
the following characteristics: they act on both DNA and
RNA, cleave double-stranded and single-stranded nucleic
acids and require a divalent ion such as magnesium for
their activity. An histidine has been shown to be
essential for the activity of the Serratia marcescens
nuclease. This residue is located in a conserved region
which also contains an aspartic acid residue that could
be implicated in the binding of the divalent ion.
Length = 198
Score = 26.2 bits (58), Expect = 7.3
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 19 NFN--SWQ-LEELERAFLASHYPDVFMREALALRLDLKESRVAV 59
FN +W LE R LA + V++ L ++ VAV
Sbjct: 95 GFNQGNWNRLENYVRKLLAKNKDTVYVVTGPIYLPTLPDNNVAV 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0682 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,914,385
Number of extensions: 729871
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1402
Number of HSP's successfully gapped: 109
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)