RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9529
(149 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 74.5 bits (183), Expect = 3e-19
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
A R+ R + Q ELE+ FL + Y R +A L+L E +V +WFQNRR K +
Sbjct: 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 69
Query: 70 KKEHTK 75
K +
Sbjct: 70 KINKDR 75
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 73.7 bits (181), Expect = 4e-19
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
R + +Q ELE+ F + Y R +A L L E ++ +WFQNRR KW+K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 74.3 bits (182), Expect = 4e-19
Identities = 29/76 (38%), Positives = 40/76 (52%)
Query: 6 SDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65
SD L +K+R+ R F Q ELER F Y RE LA + L ++V +WFQN R
Sbjct: 2 SDGLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHR 61
Query: 66 AKWRKKEHTKKGPGRP 81
K ++ ++ K G P
Sbjct: 62 YKTKRAQNEKGYEGHP 77
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 72.9 bits (179), Expect = 9e-19
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73
+R+RT+F Q+E LE+ F +HYPDVF RE LA ++DL E+R+ VWF NRRAKWR++E
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 74 TK 75
+
Sbjct: 62 LR 63
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 71.4 bits (175), Expect = 3e-18
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
+ + F++ Q ELE+ F Y R+ LA L L E +V WFQNRRAKWR+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 70.3 bits (172), Expect = 7e-18
Identities = 20/57 (35%), Positives = 32/57 (56%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
R+ R ++ QL ELER + A+ + R ++ L E ++ +WFQNRR K +K
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 69.9 bits (171), Expect = 2e-17
Identities = 23/61 (37%), Positives = 30/61 (49%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K R RT N QL L + A+ PD M+E L L + VWFQN+R K +K+
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61
Query: 72 E 72
Sbjct: 62 S 62
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 70.4 bits (172), Expect = 2e-17
Identities = 27/70 (38%), Positives = 39/70 (55%)
Query: 3 GNLSDDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQ 62
+S+ RTNF + QL ELE+ F + Y R +A L+L E++V +WFQ
Sbjct: 17 AKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQ 76
Query: 63 NRRAKWRKKE 72
NRR K +K+E
Sbjct: 77 NRRMKQKKRE 86
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 69.2 bits (169), Expect = 2e-17
Identities = 25/57 (43%), Positives = 33/57 (57%)
Query: 15 RSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
R RT F QL LE+ F +Y R LA +L+L ES + VWFQNRR K +++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 68.4 bits (167), Expect = 4e-17
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
R+ RT F + QL LER F Y + R + L L E++V +WFQNRRAK ++
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 67.3 bits (164), Expect = 2e-16
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73
RR+RT F S Q+ ELE+ FL Y L+ +L L ++V +WF+NRR + + +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 74 TKK 76
K
Sbjct: 62 QHK 64
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 66.9 bits (163), Expect = 2e-16
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72
RR RT+F S QL++LE F + YPD+ RE +A+ +L E+RV VWF+NRRAKWRK+E
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 66.8 bits (163), Expect = 2e-16
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 15 RSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67
R RT F+S QL L+R F + Y R+ L+ L L E+++ +WFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 66.9 bits (163), Expect = 2e-16
Identities = 36/61 (59%), Positives = 48/61 (78%)
Query: 12 KRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKK 71
K+RRSRT F++ QL+ELERAF + YPD++ RE LA R +L E+R+ VWFQNRRA+ RK+
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60
Query: 72 E 72
Sbjct: 61 H 61
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 65.0 bits (158), Expect = 1e-15
Identities = 24/63 (38%), Positives = 34/63 (53%)
Query: 13 RRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72
RR+ R F+ Q+ ELER F Y RE LA + L ++V +WFQN R K +++
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 73 HTK 75
K
Sbjct: 62 KDK 64
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 63.5 bits (154), Expect = 5e-15
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 14 RRSRTNFNSWQLEELERAF-LASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72
Q+E LE F + +PD +A L E + WF+ R A+WR+ E
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
Query: 73 HTKKGPG 79
Sbjct: 62 GLPSECR 68
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 63.5 bits (154), Expect = 6e-15
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALAL---------------RLDLKESRVA 58
R SR + L +E F + YPD RE +A + +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 59 VWFQNRRAKWRKKE 72
WF NRR + +++
Sbjct: 61 NWFANRRKEIKRRA 74
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 62.2 bits (151), Expect = 9e-15
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRR 65
R F Q L F + P ++ ++ +L L+ S V+ +F N R
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 61.2 bits (148), Expect = 3e-14
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 7 DDLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRA 66
+ L R+R RT+ + LE FL P + +A +L L++ V VWF NRR
Sbjct: 2 ETLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQ 61
Query: 67 KWRKK 71
K ++
Sbjct: 62 KGKRS 66
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 60.5 bits (147), Expect = 4e-14
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 24 QLEELERAFLA-SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
LE+ F A + +PD E L+ +LD + WF+ RR + +
Sbjct: 4 PNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 60.3 bits (146), Expect = 5e-14
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
+++ + LE+ F + +E +A + + +V VWF N+R + +
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 60.3 bits (146), Expect = 5e-14
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 15 RSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKE 72
+ RT + + LER F P +A L+L++ V VWF NRR + ++ +
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 59.6 bits (144), Expect = 2e-13
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 1 GDGNLSDDLASKRRRSRTNFNSWQLEELE----RAFLASHYPDVFMREALALRLDLKESR 56
G+ +R RT F + Q E++ R D E ++
Sbjct: 5 SSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQV 64
Query: 57 VAVWFQNRRAKWRK 70
+ +W N +
Sbjct: 65 LKIWMHNNKNSGPS 78
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 56.5 bits (136), Expect = 2e-12
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 14 RRSRTNFNSWQLEELERAFLASH---YPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
RR R NFN E L F + YP +E LA + + S+V+ WF N+R +++K
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 71 KEH 73
Sbjct: 62 NIG 64
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 55.9 bits (134), Expect = 5e-12
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 10 ASKRRRSRTNFNSWQLEELERAFL-ASHYPDVFMREALALRLDLKESRVAVWFQNRRAKW 68
S RSRT + L L+ YPD L+ +LDL + + +FQN+R
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63
Query: 69 RK 70
+
Sbjct: 64 KH 65
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 54.8 bits (132), Expect = 8e-12
Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 15 RSRTNFNSWQLEELERAFLA-SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWR 69
+ + LE+ F++ + YPD + L+ +LD ++ WF++RR + +
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 54.4 bits (131), Expect = 1e-11
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 14 RRSRTNFNSWQLEELERAFLASH---YPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
+ R + YP ++ +A + +L +V WF N R + +
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 53.2 bits (128), Expect = 4e-11
Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 17 RTNFNSWQLEELERAFLA---SHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
F + LE F + Y D E L L ++ W NRR K +
Sbjct: 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 51.9 bits (124), Expect = 1e-10
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRK 70
RT+ + LE++F+ + P +A +L++++ + VWF NRR K ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 46.7 bits (110), Expect = 1e-08
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 21/77 (27%)
Query: 17 RTNFNSWQLEELERAFLASHYPDVFMREALALRLD---------------------LKES 55
R + + L +A+ P RE L + + E
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 56 RVAVWFQNRRAKWRKKE 72
RV WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRH 77
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 46.3 bits (109), Expect = 2e-08
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 8 DLASKRRRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAK 67
D ++ + +T + QL L+ +FL S L + L + WF ++
Sbjct: 2 DFTPQKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Query: 68 WRKKEHTKK 76
KE +
Sbjct: 59 KALKEEKME 67
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.4 bits (99), Expect = 6e-07
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 14 RRSRTNFNSWQLEELERAFLASHYPDVFMREALALRLDLKESRVAVWFQNRRAKWRKKEH 73
S QL L+ FL + + L L + WF + R + +
Sbjct: 4 GSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63
>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa
sylvestris) [TaxId: 13555]}
Length = 57
Score = 23.9 bits (51), Expect = 2.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 90 CSGDPIPAEELKRKERARRQK 110
CSGDP P+ E + E +K
Sbjct: 37 CSGDPKPSSEFEEFEIDEEEK 57
>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
{Shewanella oneidensis [TaxId: 70863]}
Length = 190
Score = 25.3 bits (55), Expect = 3.1
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 61 FQNRRAKWRKKEHTKKGPGR 80
R A H++ G GR
Sbjct: 144 LATRTATEIDLRHSRYGMGR 163
>d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5
[TaxId: 10726]}
Length = 167
Score = 24.6 bits (53), Expect = 4.1
Identities = 5/55 (9%), Positives = 14/55 (25%), Gaps = 3/55 (5%)
Query: 30 RAFLASHYPDV---FMREALALRLDLKESRVAVWFQNRRAKWRKKEHTKKGPGRP 81
R + ++ +L V ++ +R + + R
Sbjct: 15 RFKHNNSKKPFASSYVSTIQSLAKSYSARTTIVLGDKGKSVFRLEHLPEYAGNRD 69
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.8 bits (53), Expect = 6.5
Identities = 5/48 (10%), Positives = 20/48 (41%)
Query: 99 ELKRKERARRQKKLMKSLERQQRKLAAKGVTVDLETLKREWESQQASE 146
+ + ++ +++++ LE + A DL+ + ++ +
Sbjct: 708 KERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRD 755
>d1tjla2 g.39.1.13 (A:111-151) DnaK suppressor protein DksA, zinc
finger domain {Escherichia coli [TaxId: 562]}
Length = 41
Score = 22.4 bits (48), Expect = 8.2
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 92 GDPIPAEELKRKERARRQKKLMKSLERQQRKLA 124
G I L+ + A E +++++A
Sbjct: 8 GVEIGIRRLEARPTADLCIDCKTLAEIREKQMA 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.379
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 576,380
Number of extensions: 25953
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 121
Number of HSP's successfully gapped: 49
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)