BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy953
(164 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GAX|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1GAX|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|A Chain A, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IVS|B Chain B, Crystal Structure Of Thermus Thermophilus Valyl-Trna
Synthetase Complexed With Trna(Val) And Valyl-Adenylate
Analogue
pdb|1IYW|A Chain A, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
pdb|1IYW|B Chain B, Preliminary Structure Of Thermus Thermophilus Ligand-Free
Valyl-Trna Synthetase
Length = 862
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ G+ RF+AR + E+ E
Sbjct: 268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 327
Query: 59 KGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT 118
G + + + CSR +E + PQW++R +AE+ ++ ++ G++ +P+
Sbjct: 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWK 387
Query: 119 KTWYQWLENNRE 130
K WLEN ++
Sbjct: 388 KVNMDWLENVKD 399
>pdb|1QU2|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1QU3|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
pdb|1FFY|A Chain A, Insights Into Editing From An Ile-Trna Synthetase
Structure With Trna(Ile) And Mupirocin
Length = 917
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
V +PGH +DY V Q+ LP+I+ +++GV + G+F GM A VT++LTEKG
Sbjct: 323 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 382
Query: 61 --LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKI 112
L ++H+ P R+K V PQW+ ++ + + A++ K+
Sbjct: 383 ALLKLDFITHSY--PHDWRTKKPVIFRATPQWFASISKVRQDILDAIENTNFKV 434
>pdb|1WK9|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 146
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ G+ RF+AR + E+ E
Sbjct: 77 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 136
Query: 59 KG 60
G
Sbjct: 137 AG 138
>pdb|1WKA|A Chain A, Structural Basis For Non-Cognate Amino Acid Discrimination
By The Valyl-Trna Synthetase Editing Domain
Length = 147
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ G+ RF+AR + E+ E
Sbjct: 77 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 136
Query: 59 KG 60
G
Sbjct: 137 AG 138
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFN--------------EEGVIIGDYGEFTGMKRF 46
A+ P HD DYE A++ LP+ V EE I+ + G F G +
Sbjct: 336 AIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE 395
Query: 47 DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79
+ + +V L EKGL +G V++ + L SR +
Sbjct: 396 EGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQR 428
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFN--------------EEGVIIGDYGEFTGMKRF 46
A+ P HD DYE A++ LP+ V EE I+ + G F G +
Sbjct: 336 AIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE 395
Query: 47 DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79
+ + +V L EKGL +G V++ + L SR +
Sbjct: 396 EGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQR 428
>pdb|3O0A|A Chain A, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
pdb|3O0A|B Chain B, Crystal Structure Of The Wild Type Cp1 Hydrolitic Domain
From Aquifex Aeolicus Leucyl-Trna
Length = 219
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE------------FTGMKRFDA 48
A+ P HD D+E A++ +LP+ V EG + G F G+ A
Sbjct: 138 AIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETA 197
Query: 49 RTRVTEVLTEKGLYRGTVSHAM 70
+ ++TE L ++GL VS+ +
Sbjct: 198 KRKITEWLQDRGLGEKKVSYRL 219
>pdb|1JZQ|A Chain A, Isoleucyl-Trna Synthetase Complexed With Isoleucyl-
Adenylate Analogue
pdb|1JZS|A Chain A, Isoleucyl-trna Synthetase Complexed With Mupirocin
pdb|1ILE|A Chain A, Isoleucyl-Trna Synthetase
Length = 821
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGL 61
V +P D E A+ LPL+ +EEG ++ + F G+ +A + L +GL
Sbjct: 318 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRGL 375
Query: 62 YRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTW 121
S+ P C R + W+++ ++ ++ E+ +P H +
Sbjct: 376 LFKEESYLHSYPHCWRCSTPLMYYATESWFIKNTLFKDELIR--NNQEIHWVPPHIKEGR 433
Query: 122 Y-QWLEN 127
Y +WL+N
Sbjct: 434 YGEWLKN 440
>pdb|3PZ0|A Chain A, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|B Chain B, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|C Chain C, The Crystal Structure Of Aaleurs-Cp1
pdb|3PZ0|D Chain D, The Crystal Structure Of Aaleurs-Cp1
Length = 221
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE------------FTGMKRFDA 48
A+ P HD D+E A++ +LP+ V EG + G F G+ A
Sbjct: 144 AIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETA 203
Query: 49 RTRVTEVLTEKGL 61
+ ++TE L ++GL
Sbjct: 204 KRKITEWLQDRGL 216
>pdb|3PZ5|A Chain A, The Crystal Structure Of Aaleurs-Cp1-D20
pdb|3PZ5|B Chain B, The Crystal Structure Of Aaleurs-Cp1-D20
Length = 201
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE------------FTGMKRFDA 48
A+ P HD D+E A++ +LP+ V EG + G F G+ A
Sbjct: 124 AIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLVNSDGFDGLDSETA 183
Query: 49 RTRVTEVLTEKGL 61
+ ++TE L ++GL
Sbjct: 184 KRKITEWLQDRGL 196
>pdb|4AQ7|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4AQ7|D Chain D, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucyl-Adenylate Analogue In The
Aminoacylation Conformation
pdb|4ARC|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And Leucine In The Editing Conformation
pdb|4ARI|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|4AS1|A Chain A, Ternary Complex Of E. Coli Leucyl-Trna Synthetase,
Trna(Leu) And The Benzoxaborole An2679 In The Editing
Conformation
pdb|3ZGZ|A Chain A, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
pdb|3ZGZ|D Chain D, Ternary Complex Of E. Coli Leucyl-trna Synthetase,
Trna(leu) And Toxic Moiety From Agrocin 84 (tm84) In
Aminoacylation- Like Conformation
Length = 880
Score = 34.3 bits (77), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 1 AVKISPGHDHNDYEVAQRLNL---PLI------------TVFNEEGVIIGDYGEFTGMKR 45
AV PGHD DYE A + L P+I E+GV+ + GEF G+
Sbjct: 354 AVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDH 412
Query: 46 FDARTRVTEVLTEKGL 61
A + + LT G+
Sbjct: 413 EAAFNAIADKLTAMGV 428
>pdb|2AJG|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJG|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase
pdb|2AJH|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJH|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Methionine
pdb|2AJI|A Chain A, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
pdb|2AJI|B Chain B, Crystal Structure Of The Editing Domain Of E. Coli Leucyl-
Trna Synthetase Complexes With Isoleucine
Length = 196
Score = 33.9 bits (76), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 16/76 (21%)
Query: 1 AVKISPGHDHNDYEVAQRLNL---PLI------------TVFNEEGVIIGDYGEFTGMKR 45
AV PGHD DYE A + L P+I E+GV+ + GEF G+
Sbjct: 117 AVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDH 175
Query: 46 FDARTRVTEVLTEKGL 61
A + + LT G+
Sbjct: 176 EAAFNAIADKLTAMGV 191
>pdb|1FWX|A Chain A, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|B Chain B, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|C Chain C, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
pdb|1FWX|D Chain D, Crystal Structure Of Nitrous Oxide Reductase From P.
Denitrificans
Length = 595
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 24 ITVFN----EEGVIIGDYGEFTGMKRFDARTRVTEVLT 57
I VFN E+ + GDY E G+K D R + + T
Sbjct: 233 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFT 270
>pdb|4E69|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4E69|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus, Unliganded Structure
pdb|4EBU|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502312)
From Oceanicola Granulosus, With Bound AmpADP CRYSTAL
FORM I
pdb|4EUM|A Chain A, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
pdb|4EUM|B Chain B, Crystal Structure Of A Sugar Kinase (Target Efi-502132)
From Oceanicola Granulosus With Bound Amp, Crystal Form
Ii
Length = 328
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 63 RGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWY 122
R T+ A+ + +P L+P+ + TGEM E +Q ++ + W+
Sbjct: 164 RATLLRALAQARATGRTIAFDPNLRPRLWAGTGEMTETIMQGAAVSDIALPSFEDEAAWF 223
>pdb|1UPB|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPB|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|E Chain E, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|1UPC|F Chain F, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus
pdb|2IHV|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHV|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: 5-Guanidinovaleric Acid Complex
pdb|2IHU|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
pdb|2IHU|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Putative Reaction Intermediate Complex
Length = 573
Score = 27.7 bits (60), Expect = 3.1, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Query: 15 VAQRLNLPLITVFNEEGVI-IG---DYGEFTG 42
+A+RLN+P+IT + +GV+ +G +YG TG
Sbjct: 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTG 270
>pdb|1UPA|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|1UPA|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus (semet Structure)
pdb|2IHT|A Chain A, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|B Chain B, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|C Chain C, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
pdb|2IHT|D Chain D, Carboxyethylarginine Synthase From Streptomyces
Clavuligerus: Semet Structure
Length = 573
Score = 27.7 bits (60), Expect = 3.2, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
Query: 15 VAQRLNLPLITVFNEEGVI-IG---DYGEFTG 42
+A+RLN+P+IT + +GV+ +G +YG TG
Sbjct: 239 LAERLNIPVITTYIAKGVLPVGHELNYGAVTG 270
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 11/48 (22%)
Query: 85 LLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKK 132
L K +WY +T A++ + +TG TW +L NRE+K
Sbjct: 334 LAKSRWYNQTPNRAKRVITTFRTG-----------TWDAYLHMNRERK 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,294,373
Number of Sequences: 62578
Number of extensions: 204631
Number of successful extensions: 865
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 20
length of query: 164
length of database: 14,973,337
effective HSP length: 91
effective length of query: 73
effective length of database: 9,278,739
effective search space: 677347947
effective search space used: 677347947
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)