Query psy953
Match_columns 164
No_of_seqs 158 out of 1450
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:57:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0525 ValS Valyl-tRNA synthe 100.0 2.5E-45 5.4E-50 326.9 13.9 144 1-144 268-416 (877)
2 COG0060 IleS Isoleucyl-tRNA sy 100.0 2.6E-45 5.5E-50 329.7 11.4 142 1-144 328-474 (933)
3 PLN02381 valyl-tRNA synthetase 100.0 1.3E-43 2.8E-48 326.8 14.8 144 1-144 381-532 (1066)
4 PLN02843 isoleucyl-tRNA synthe 100.0 1.6E-43 3.5E-48 324.2 12.6 141 1-143 340-485 (974)
5 PTZ00419 valyl-tRNA synthetase 100.0 4.5E-43 9.9E-48 322.6 14.9 142 1-142 315-460 (995)
6 PRK05743 ileS isoleucyl-tRNA s 100.0 4.7E-43 1E-47 319.9 14.1 140 1-142 324-469 (912)
7 PTZ00427 isoleucine-tRNA ligas 100.0 7.7E-43 1.7E-47 323.3 14.0 141 1-143 436-587 (1205)
8 PLN02882 aminoacyl-tRNA ligase 100.0 1E-42 2.2E-47 322.6 14.5 141 1-143 333-483 (1159)
9 PF00133 tRNA-synt_1: tRNA syn 100.0 4.9E-43 1.1E-47 308.5 11.4 142 1-144 289-434 (601)
10 PRK05729 valS valyl-tRNA synth 100.0 2.2E-42 4.7E-47 314.9 15.5 142 1-142 271-416 (874)
11 PRK06039 ileS isoleucyl-tRNA s 100.0 2.2E-42 4.8E-47 317.4 15.5 140 1-142 317-461 (975)
12 PRK13804 ileS isoleucyl-tRNA s 100.0 2.3E-42 4.9E-47 316.5 12.7 141 1-143 346-506 (961)
13 TIGR00422 valS valyl-tRNA synt 100.0 9.3E-42 2E-46 310.5 15.8 153 1-157 269-425 (861)
14 KOG0432|consensus 100.0 2.7E-42 5.7E-47 303.6 11.3 157 1-157 327-488 (995)
15 PRK14900 valS valyl-tRNA synth 100.0 1.3E-41 2.9E-46 313.5 16.0 142 1-142 286-431 (1052)
16 PLN02943 aminoacyl-tRNA ligase 100.0 3E-40 6.4E-45 302.5 14.8 139 1-143 325-467 (958)
17 TIGR00392 ileS isoleucyl-tRNA 100.0 4E-40 8.6E-45 299.9 13.8 140 1-142 328-478 (861)
18 PRK13208 valS valyl-tRNA synth 100.0 3.5E-39 7.5E-44 291.8 14.5 140 1-142 269-413 (800)
19 PRK12300 leuS leucyl-tRNA synt 100.0 7.3E-37 1.6E-41 279.0 14.3 143 1-146 264-459 (897)
20 PLN02959 aminoacyl-tRNA ligase 100.0 2.3E-35 4.9E-40 272.8 15.2 151 1-156 394-607 (1084)
21 TIGR00395 leuS_arch leucyl-tRN 100.0 2.5E-34 5.4E-39 263.4 12.1 155 1-158 304-519 (938)
22 KOG0433|consensus 100.0 2.9E-34 6.2E-39 249.5 8.8 139 1-143 341-485 (937)
23 KOG0434|consensus 100.0 3.3E-32 7.1E-37 235.6 7.0 140 1-142 322-471 (1070)
24 TIGR00396 leuS_bact leucyl-tRN 99.8 1.9E-19 4.2E-24 163.9 8.6 63 1-64 331-405 (842)
25 PLN02563 aminoacyl-tRNA ligase 99.8 7.6E-19 1.7E-23 161.3 8.8 62 1-63 418-497 (963)
26 PRK00390 leuS leucyl-tRNA synt 99.8 1.1E-18 2.4E-23 158.5 8.5 61 1-62 333-407 (805)
27 cd00817 ValRS_core catalytic c 99.8 7.9E-18 1.7E-22 141.7 11.6 98 45-142 116-227 (382)
28 PRK12268 methionyl-tRNA synthe 99.7 2.7E-16 5.9E-21 137.8 10.0 149 3-158 48-255 (556)
29 PRK12267 methionyl-tRNA synthe 99.7 5.8E-16 1.3E-20 138.0 10.6 148 2-156 47-227 (648)
30 TIGR00398 metG methionyl-tRNA 99.7 5.9E-16 1.3E-20 135.0 10.2 148 2-156 42-250 (530)
31 cd00818 IleRS_core catalytic c 99.6 4.4E-15 9.5E-20 123.2 10.0 87 45-142 117-207 (338)
32 KOG0437|consensus 99.6 2E-15 4.4E-20 132.7 8.0 121 30-157 471-599 (1080)
33 PRK11893 methionyl-tRNA synthe 99.6 8.5E-15 1.8E-19 127.0 11.1 141 2-143 44-218 (511)
34 cd00814 MetRS_core catalytic c 99.5 6E-14 1.3E-18 115.5 10.0 140 2-144 43-200 (319)
35 PRK00133 metG methionyl-tRNA s 99.5 3.7E-13 8.1E-18 120.6 10.3 140 2-143 45-244 (673)
36 PF13603 tRNA-synt_1_2: Leucyl 99.4 9.5E-14 2E-18 106.1 4.9 56 1-57 114-185 (185)
37 COG0143 MetG Methionyl-tRNA sy 99.4 7.8E-13 1.7E-17 115.6 8.6 146 2-147 48-253 (558)
38 PLN02610 probable methionyl-tR 99.3 2.4E-11 5.2E-16 110.6 9.9 149 3-158 62-274 (801)
39 PLN02224 methionine-tRNA ligas 99.3 2.6E-11 5.7E-16 107.5 9.3 147 3-156 113-291 (616)
40 cd00668 Ile_Leu_Val_MetRS_core 99.2 4.2E-11 9.1E-16 98.2 7.6 80 44-140 111-194 (312)
41 COG0495 LeuS Leucyl-tRNA synth 99.2 1E-10 2.2E-15 105.9 8.3 123 1-152 340-482 (814)
42 PF09334 tRNA-synt_1g: tRNA sy 99.2 2.7E-11 5.8E-16 102.5 4.3 144 2-146 42-244 (391)
43 cd00812 LeuRS_core catalytic c 98.8 1.1E-08 2.3E-13 84.3 7.3 118 3-141 44-181 (314)
44 KOG0435|consensus 98.4 1.1E-07 2.5E-12 83.9 3.1 150 1-157 346-533 (876)
45 PLN02563 aminoacyl-tRNA ligase 98.2 3.1E-06 6.6E-11 78.9 7.1 84 44-130 209-306 (963)
46 COG0495 LeuS Leucyl-tRNA synth 98.2 2.6E-06 5.6E-11 77.7 6.2 83 45-129 133-230 (814)
47 KOG0436|consensus 98.2 1.5E-05 3.2E-10 67.6 9.9 147 4-157 84-270 (578)
48 TIGR00396 leuS_bact leucyl-tRN 98.1 6.6E-06 1.4E-10 75.9 6.7 126 3-130 73-226 (842)
49 PRK00390 leuS leucyl-tRNA synt 97.8 5.3E-05 1.2E-09 69.7 6.9 88 44-133 130-231 (805)
50 KOG0435|consensus 97.7 1.2E-05 2.7E-10 71.3 1.8 80 44-127 155-250 (876)
51 KOG1247|consensus 97.3 0.00024 5.3E-09 60.3 4.3 86 55-143 167-259 (567)
52 PF04918 DltD_M: DltD central 68.6 1.8 3.9E-05 32.3 0.3 18 78-95 23-40 (163)
53 PF11211 DUF2997: Protein of u 68.0 7.3 0.00016 23.1 2.8 32 25-56 3-34 (48)
54 TIGR03826 YvyF flagellar opero 49.9 15 0.00032 26.8 2.3 33 50-83 60-92 (137)
55 PLN02517 phosphatidylcholine-s 48.0 16 0.00035 33.2 2.6 65 50-118 159-223 (642)
56 COG1034 NuoG NADH dehydrogenas 45.3 50 0.0011 30.5 5.4 67 5-80 13-106 (693)
57 COG2840 Uncharacterized protei 45.3 9.2 0.0002 29.3 0.6 63 30-93 90-154 (184)
58 PF10413 Rhodopsin_N: Amino te 44.4 13 0.00028 20.6 0.9 12 152-163 6-17 (36)
59 TIGR00422 valS valyl-tRNA synt 40.7 40 0.00086 31.7 4.2 49 44-95 147-202 (861)
60 PF02563 Poly_export: Polysacc 40.0 35 0.00077 22.0 2.8 35 24-58 32-69 (82)
61 PF09297 zf-NADH-PPase: NADH p 38.7 20 0.00043 19.0 1.2 16 72-87 3-18 (32)
62 TIGR03137 AhpC peroxiredoxin. 35.6 27 0.00058 26.3 1.9 66 12-83 101-177 (187)
63 PF07282 OrfB_Zn_ribbon: Putat 34.3 94 0.002 19.1 4.0 46 47-92 3-48 (69)
64 PF01475 FUR: Ferric uptake re 34.3 78 0.0017 21.7 4.0 36 49-84 45-92 (120)
65 PTZ00427 isoleucine-tRNA ligas 34.0 43 0.00094 33.0 3.4 48 44-94 217-273 (1205)
66 PF11946 DUF3463: Domain of un 33.5 55 0.0012 23.9 3.1 52 87-139 14-67 (138)
67 PRK06039 ileS isoleucyl-tRNA s 32.4 53 0.0011 31.5 3.6 49 44-95 156-213 (975)
68 COG3966 DltD Protein involved 32.2 19 0.00041 30.7 0.5 18 78-95 119-136 (415)
69 COG1734 DksA DnaK suppressor p 32.1 17 0.00037 25.9 0.2 13 71-83 79-91 (120)
70 PRK12300 leuS leucyl-tRNA synt 31.4 56 0.0012 31.0 3.6 36 44-82 108-143 (897)
71 PLN02882 aminoacyl-tRNA ligase 31.3 47 0.001 32.6 3.1 49 44-95 153-210 (1159)
72 PF13263 PHP_C: PHP-associated 29.5 37 0.0008 20.4 1.4 20 6-25 1-20 (56)
73 PF10330 Stb3: Putative Sin3 b 29.3 53 0.0012 22.3 2.2 27 31-57 28-54 (92)
74 TIGR00395 leuS_arch leucyl-tRN 28.1 67 0.0015 30.7 3.5 36 44-82 147-182 (938)
75 PRK09437 bcp thioredoxin-depen 28.1 74 0.0016 22.6 3.1 30 25-57 124-153 (154)
76 cd03016 PRX_1cys Peroxiredoxin 26.8 65 0.0014 24.5 2.7 66 12-84 97-175 (203)
77 PF00133 tRNA-synt_1: tRNA syn 26.4 1.1E+02 0.0025 27.5 4.5 49 44-95 138-193 (601)
78 COG1609 PurR Transcriptional r 26.1 2E+02 0.0042 23.7 5.6 56 3-61 119-175 (333)
79 TIGR03027 pepcterm_export puta 25.4 1.6E+02 0.0034 21.6 4.5 37 22-58 20-59 (165)
80 PF12967 DUF3855: Domain of Un 24.4 38 0.00083 24.2 0.9 23 41-63 14-36 (158)
81 PRK13599 putative peroxiredoxi 23.9 84 0.0018 24.4 2.9 65 13-84 101-181 (215)
82 KOG0195|consensus 23.7 56 0.0012 27.3 1.9 14 2-15 71-84 (448)
83 COG0735 Fur Fe2+/Zn2+ uptake r 23.2 1.9E+02 0.0042 20.9 4.5 37 49-85 58-106 (145)
84 PRK07217 replication factor A; 23.1 48 0.001 27.6 1.4 48 5-56 205-258 (311)
85 PF09012 FeoC: FeoC like trans 22.9 1.3E+02 0.0029 18.6 3.2 34 47-80 29-62 (69)
86 PLN02959 aminoacyl-tRNA ligase 22.4 1.6E+02 0.0036 28.7 5.0 59 31-92 202-271 (1084)
87 TIGR00392 ileS isoleucyl-tRNA 22.3 96 0.0021 29.2 3.4 49 44-95 151-210 (861)
88 TIGR03028 EpsE polysaccharide 21.6 1.7E+02 0.0036 23.0 4.2 42 22-63 21-65 (239)
89 COG0084 TatD Mg-dependent DNas 21.0 79 0.0017 25.4 2.2 47 43-96 130-178 (256)
90 cd03008 TryX_like_RdCVF Trypar 20.4 1.9E+02 0.0041 21.1 4.0 30 6-35 95-127 (146)
No 1
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.5e-45 Score=326.92 Aligned_cols=144 Identities=42% Similarity=0.726 Sum_probs=140.1
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCC-CCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-EFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~-~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g 79 (164)
|||+|||||++||+++++|+||+++++|++|+++++++ +|+||++++||++|++.|++.|++.+.+++.|++|||+|||
T Consensus 268 ~VkItpahD~nD~e~~krh~Lp~i~i~d~dG~in~~~~~~~~Gl~r~eAR~kIv~~L~~~GlLvk~e~~~h~V~~~~R~g 347 (877)
T COG0525 268 AVKITPAHDFNDYEVGKRHNLPLINIIDEDGRINEEAAGEFAGLDRFEARKKIVEDLEEQGLLVKIEPHKHSVGHCERCG 347 (877)
T ss_pred eEEecCCCCchhhhhhhcCCCCceEEECCCCeeccCCccccCCCcHHHHHHHHHHHHHhCCCeEeeeeccccCccccCCC
Confidence 79999999999999999999999999999999997775 99999999999999999999999999999999999999999
Q ss_pred CeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccC
Q psy953 80 DVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRER 144 (164)
Q Consensus 80 ~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~ 144 (164)
++|||++++|||+++..+++.+++++++|+++|+|+.+++++.+||++++||||| ||+|||++..
T Consensus 348 ~~IEp~ls~QWfVk~~~la~~~l~~~~~g~i~f~P~~~~~~~~~W~~~i~DWcISRQlwwGh~IPvWy~ 416 (877)
T COG0525 348 TPIEPLLSKQWFVKVLELAKKALEAVKDGKIKFVPERMEKRYEDWMENIRDWCISRQLWWGHRIPVWYC 416 (877)
T ss_pred ceeeeeecceeeEEhHhhHHHHHHHHhcCCceEecHHHHHHHHHHHhhCcCceeeeeeecCcccceEEe
Confidence 9999999999999999999999999998999999999999999999999999999 9999997754
No 2
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.6e-45 Score=329.66 Aligned_cols=142 Identities=23% Similarity=0.403 Sum_probs=138.3
Q ss_pred CeEeCCCCCHHHHHHHHHcC-CCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLN-LPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~-L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g 79 (164)
+||+|||||++||.+|+++| ||+.++||++|+|++..+.|.|+.+++|++.|++.|+++|.|++.+.+.|+|||||||+
T Consensus 328 ~VHtAPghGeeDy~vg~~~g~l~v~~pVD~~G~yt~~~~~~~G~~v~dAn~~Ii~~Lk~~g~Ll~~e~i~HsYPhcWR~k 407 (933)
T COG0060 328 LVHTAPGHGEEDYEVGKKYGLLEVLNPVDDNGRYTEEAPKYEGLFVKDANKKIIEDLKEKGNLLKSEKIEHSYPHCWRTK 407 (933)
T ss_pred ceecCCCCCHHHHHHHHHcCCcCCccccCCCccccccchhhCCceeccCCHHHHHHHHhCCceeeeeeEEeCCCcccCCC
Confidence 69999999999999999999 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccC
Q psy953 80 DVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRER 144 (164)
Q Consensus 80 ~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~ 144 (164)
+|+++|+++|||++++++|+++|++++ +++|+|++.++|+.+||++++||||| ||+|||++..
T Consensus 408 tPlIyRAt~QWFi~v~~~r~~~l~~i~--~v~w~P~~~~~R~~~mve~r~DW~ISRQR~WGvPiPi~~~ 474 (933)
T COG0060 408 TPLIYRATPQWFVSVDKLRDKMLKEIN--KVNWVPDWGKNRFGNMVENRPDWCISRQRYWGVPIPVWYC 474 (933)
T ss_pred CeeEEeecchheeEHHHHHHHHHHHHh--cceEEChhHHHHHHHHHcCCCcceeeccccCCCceeEEEE
Confidence 999999999999999999999999987 89999999999999999999999999 9999998754
No 3
>PLN02381 valyl-tRNA synthetase
Probab=100.00 E-value=1.3e-43 Score=326.78 Aligned_cols=144 Identities=46% Similarity=0.800 Sum_probs=138.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCC-CCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-EFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~-~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g 79 (164)
|||+|||||++||++|++||||++++||++|+|+++++ .|.|+++++||++|++.|++.|++.+.+.|.|++||||||+
T Consensus 381 ~V~i~PaHd~~Dy~~~~~~~L~~i~~id~~G~~~~~~~~~~~Gl~~~eAr~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~~ 460 (1066)
T PLN02381 381 AVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINSNGGSEFAGMPRFAAREAVIEALQKKGLYRGAKNNEMRLGLCSRTN 460 (1066)
T ss_pred cEEecCCCChHHHHHHHHcCCCeeeeeCCCceeCCCCccccCCCCHHHHHHHHHHHHHhCCCEecceeeecCCCeeCCCC
Confidence 79999999999999999999999999999999997754 89999999999999999999999999999999999999999
Q ss_pred CeeEEcccCeeeeeccHHHHHHHHHH---hCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccC
Q psy953 80 DVVEPLLKPQWYVRTGEMAEKAVQAV---KTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRER 144 (164)
Q Consensus 80 ~~i~~~~~~QWFi~~~~~~~~~l~~i---~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~ 144 (164)
++|++++++||||+++++++++++++ ++++|+|+|+++++++.+||++++||||| ||+|||.+..
T Consensus 461 ~~ie~~~~~QWFi~~~~l~~~al~av~~~~~~~i~~~P~~~~~~~~~wl~n~~DWcISRQr~WG~pIPiw~~ 532 (1066)
T PLN02381 461 DVVEPMIKPQWFVNCSSMAKQALDAAIDGENKKLEFIPKQYLAEWKRWLENIRDWCISRQLWWGHRIPAWYV 532 (1066)
T ss_pred ceEEEeecccceEEchHHHHHHHHHHhhccCCceEEEChHHHHHHHHHHhcCccceeeeecccCCccceEEe
Confidence 99999999999999999999999999 66799999999999999999999999999 9999998753
No 4
>PLN02843 isoleucyl-tRNA synthetase
Probab=100.00 E-value=1.6e-43 Score=324.19 Aligned_cols=141 Identities=21% Similarity=0.341 Sum_probs=136.9
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHH-HHHHHHHHHHHHCCCeeeeeeeeeecceecCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRF-DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSK 79 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~-~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g 79 (164)
+||+|||||++||+++++|||+++++||++|+|++..+.|.|+.++ +||++|++.|+++|++++.+.+.|+|||||||+
T Consensus 340 ~Vh~aPaHg~~Dy~~~~~~~l~~~~~vd~~G~~~~~~~~~~G~~v~~~a~~~Ii~~L~~~g~l~~~e~~~H~yp~cwR~~ 419 (974)
T PLN02843 340 LVHTAPGHGQEDYITGLKYGLPLLSPVDDAGKFTEEAGQFSGLSVLGEGNAAVVEALDEAGSLLMEEAYGHKYPYDWRTK 419 (974)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcccccCCCceEccCCcccCCcEehhcchHHHHHHHHHCCCeeeeeeecCCCCccCCCC
Confidence 6999999999999999999999999999999999888899999998 899999999999999999999999999999999
Q ss_pred CeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCccccc
Q psy953 80 DVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRE 143 (164)
Q Consensus 80 ~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~ 143 (164)
+|+++++++|||+++++++++++++++ +++|+|+++++++.+||++++||||| ||+|||++.
T Consensus 420 ~pvi~r~t~QWFi~~~~~k~~al~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQr~WG~pIP~~~ 485 (974)
T PLN02843 420 KPTIFRATEQWFASVEGFRQAALDAID--KVKWIPAQGENRIRAMVSGRSDWCISRQRTWGVPIPVFY 485 (974)
T ss_pred CeEEEEecCceeEeCHHHHHHHHHHHh--ccEEEChHHHHHHHHHHhcCcceeeeeccccccEEEEEE
Confidence 999999999999999999999999998 79999999999999999999999999 999999553
No 5
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=100.00 E-value=4.5e-43 Score=322.64 Aligned_cols=142 Identities=52% Similarity=0.914 Sum_probs=139.5
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||+++++||||++++||++|+|+++.+.|.|+.+++||++|++.|+++|++.+.++|.|++|||||||+
T Consensus 315 ~V~~~Pahd~~D~~~~~~~~L~~~~~i~~~G~~~~~~~~~~Gl~~~~ar~~ii~~L~~~g~l~~~~~~~~~~p~~~R~~~ 394 (995)
T PTZ00419 315 AVKITPAHDPNDYEIAKRHNLPFINIFTLDGKINENGGEFAGMHRFDCRRKIEEELKEMGLLRDKVPNPMRLPRCSRSGD 394 (995)
T ss_pred CeEeCCCCChHHHHHHHHcCCCeeeeeCCCceEcCCCcccCCCCHHHHHHHHHHHHHhcCCEEeeEEeecCCCEeCCCCC
Confidence 79999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
+|++++++|||++|+++++++++++++++++|+|+++++++.+||++++||||| ||+|||++
T Consensus 395 ~ie~~~~~QWFi~~~~~~~~al~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~~ 460 (995)
T PTZ00419 395 IVEPMLIPQWYVNCKDMAKRAVEAVRNGELKIIPSSHENVWYHWLENIQDWCISRQLWWGHRIPAY 460 (995)
T ss_pred EEEEEecCeeeEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCceeeEE
Confidence 999999999999999999999999988899999999999999999999999999 99999986
No 6
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=4.7e-43 Score=319.92 Aligned_cols=140 Identities=26% Similarity=0.429 Sum_probs=137.0
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||+++++||||++++||++|+|++..++|.|+++++||++|++.|+++|++++.+.|.|++|||||||+
T Consensus 324 ~Vh~aPahg~~Dy~~~~~~~L~~~~~vd~~G~~~~~~~~~~Gl~v~ea~~~Ii~~L~~~g~l~~~~~~~h~yp~~wR~~~ 403 (912)
T PRK05743 324 LVHTAPGHGEDDYVVGQKYGLEVLNPVDDDGRYTEEAPLFAGLFVFKANPKIIEKLEEKGALLKEEKITHSYPHCWRTKK 403 (912)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCeecCCCC
Confidence 69999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccH--HHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGE--MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~--~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
|+++++++|||+++++ ++++++++++ +++|+|+++++++.+||++++||||| ||+|||++
T Consensus 404 pvi~r~~~QWFi~~~~~~~k~~~l~~~~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP~~ 469 (912)
T PRK05743 404 PVIFRATPQWFISMDKKGLREQALKAIE--KVKWIPAWGKNRIESMVENRPDWCISRQRTWGVPIPIF 469 (912)
T ss_pred EEEEEecCcccEeCChHHHHHHHHHHHc--ccEEEChHHHHHHHHHHhcCcCccccccceeCceEEEE
Confidence 9999999999999998 9999999998 79999999999999999999999999 99999984
No 7
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=100.00 E-value=7.7e-43 Score=323.26 Aligned_cols=141 Identities=18% Similarity=0.350 Sum_probs=134.7
Q ss_pred CeEeCCCCCHHHHHHHHHcCC--C----ccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecce
Q psy953 1 AVKISPGHDHNDYEVAQRLNL--P----LITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPL 74 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L--~----~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~ 74 (164)
+||+|||||++||++|++||| | ++++||++|+|++..+.|.|+.+++||+.|++.|+++|++++.+.|.|+|||
T Consensus 436 iVh~aPahg~~Dy~v~~k~gL~~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~dA~~~Ii~~Lk~~g~L~~~e~~~H~yP~ 515 (1205)
T PTZ00427 436 IVHCAPTYGEDDFRVCKKNGVIDPEKNIFIDPLDANGYFTNEVEEVQNLYIKEADNVIKKKLKNENRLLSNNTIVHSYPF 515 (1205)
T ss_pred eeEecCCCChhHHHHHHHcCCCCccccccccccCCCceecCCCcccCCCCHHHhHHHHHHHHHhCCCeeeeeeeeccCCE
Confidence 699999999999999999999 2 7889999999998889999999999999999999999999999999999999
Q ss_pred ecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccc-hHHHHHHHhcCCCcccc----cCCCccccc
Q psy953 75 CSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHH-TKTWYQWLENNREKKDR----IGESQPFRE 143 (164)
Q Consensus 75 c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~-k~~~~~wl~~~~DWcIS----wG~~iP~~~ 143 (164)
|||||+|+++++++||||++++++++++++.+ +++|+|+++ +++|.+||++++||||| ||+|||++.
T Consensus 516 cwR~~tpli~~a~~QWFI~~~~~k~~~l~~~~--~i~w~P~~~~~~r~~~wl~n~~DWcISRqR~WGtPIPvW~ 587 (1205)
T PTZ00427 516 CWRSDTPLIYRAIPAWFIRVSNSTNELVKNNE--TTYWIPAHIKEKKFHNWIKDAKDWCISRNRYWGTPIPIWA 587 (1205)
T ss_pred eCCCCCEEEEEecceeEEeCcHHHHHHHHcCC--ccEEeCchhhHhHHHHHHhcCccceeeeccccCccceeEE
Confidence 99999999999999999999999999999875 899999999 58999999999999999 999999553
No 8
>PLN02882 aminoacyl-tRNA ligase
Probab=100.00 E-value=1e-42 Score=322.61 Aligned_cols=141 Identities=23% Similarity=0.399 Sum_probs=136.3
Q ss_pred CeEeCCCCCHHHHHHHHHcCC-----CccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeeccee
Q psy953 1 AVKISPGHDHNDYEVAQRLNL-----PLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLC 75 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L-----~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c 75 (164)
+||+|||||++||++|++||| +++++||++|+|++..+.|.|+.+++||+.|++.|+++|++++.+.+.|+||||
T Consensus 333 iVh~aPahG~~Dy~v~~~~gl~~~~~~~~~~vd~~G~~~~~~~~~~G~~v~eA~~~Ii~~Lk~~g~L~~~~~~~Hsyp~c 412 (1159)
T PLN02882 333 VVHCAPAFGEDDYRVCLANGIIEKGGNLPVPVDDDGCFTEKVTDFSGRYVKDADKDIIAAIKAKGRLVKSGSITHSYPFC 412 (1159)
T ss_pred eeEecCCCChhHHHHHHHcCCCccccCccceECCCceEccCCcccCCCCHHHhhHHHHHHHHHCCCccceeeeecCCCEe
Confidence 699999999999999999999 799999999999988999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccch-HHHHHHHhcCCCcccc----cCCCccccc
Q psy953 76 SRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT-KTWYQWLENNREKKDR----IGESQPFRE 143 (164)
Q Consensus 76 ~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k-~~~~~wl~~~~DWcIS----wG~~iP~~~ 143 (164)
||||+|+++++++||||++++++++++++++ +++|+|++++ +++.+||++++||||| ||||||++.
T Consensus 413 wR~~tpli~~a~~qWFi~~~~~k~~~l~~~~--~i~w~P~~~~~~r~~~wl~~~~DW~ISRqR~WGtPIPvw~ 483 (1159)
T PLN02882 413 WRSDTPLIYRAVPSWFVKVEEIKDRLLENNK--QTYWVPDYVKEKRFHNWLENARDWAVSRSRFWGTPLPIWI 483 (1159)
T ss_pred eCCCCEEEEEecceeEEEcHHHHHHHHHhhC--CcEEECCcchhhHHHHHHhcCcccceeeccccCCccceEE
Confidence 9999999999999999999999999999876 8999999994 8999999999999999 999999753
No 9
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=100.00 E-value=4.9e-43 Score=308.51 Aligned_cols=142 Identities=32% Similarity=0.582 Sum_probs=133.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
+||+|||||++||+++++|+|+++++||++|++++.++.|.|+.+++||++|++.|+++|++.+.+++.|++|+|||||+
T Consensus 289 iV~~~Pah~~~Dy~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~~ar~~ii~~L~~~g~l~~~~~~~~~~p~c~R~~~ 368 (601)
T PF00133_consen 289 IVHSAPAHGPDDYEIGKKHNLPIINPIDEDGRFTEEAGKFKGMKVFEAREKIIEDLKEKGLLLKIEEIEHSYPHCWRSGT 368 (601)
T ss_dssp EEEE-TTT-HHHHHHHHHHHHCCGCCCCCTSTBBSCCSTTTTSBHHHHHHHHHHHHHHTTSEEEEEEEEEEEEEETTTSC
T ss_pred hhhhcccCCHHHHHHHhhcCceeeEecCCCceEeecccccCCceeeeccHHHHHHHHHhhhhccccccccccceecCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccC
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRER 144 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~ 144 (164)
++++++++||||++++++++++++++ +++|+|+.+++++.+||++++||||| ||+|||++..
T Consensus 369 ~ii~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~i~~l~DWcISRQR~WG~PIPiw~~ 434 (601)
T PF00133_consen 369 PIIPRLTDQWFIKYDDWKKKALEALE--KIKFYPESYRKRFENWIDNLRDWCISRQRYWGTPIPIWYC 434 (601)
T ss_dssp BEEEEEEEEEEEEHHHHHHHHHHHHH--TSEESSSTCHHHHHHHHHT--EEE-EESSSSSEBETEEEE
T ss_pred EEEecccceeEEecHHhHHHHHhhcc--cceEEcccchhhhhhhccccccchhhccCCCCccceeeec
Confidence 99999999999999999999999998 79999999999999999999999999 9999998644
No 10
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-42 Score=314.87 Aligned_cols=142 Identities=39% Similarity=0.703 Sum_probs=139.1
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||++||||++||+++++|+||++++||++|+|++.++.|.|+++++||++|++.|+++|++.+.+++.|++|+|||||+
T Consensus 271 ~V~~~Pah~~~D~~~~~~~~l~~~~~i~~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~~~ 350 (874)
T PRK05729 271 AVKITPAHDPNDFEVGKRHNLPMINIMDEDGTINENPGEYQGLDRFEARKAIVADLEELGLLVKIEPHTHSVGHSDRSGV 350 (874)
T ss_pred ceEecCCCCHHHHHHHHHcCCCcccccCCCCeEcCCCcccCCCCHHHHHHHHHHHHHhCCCeeeeEEeeccCCeeCCCCc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
++++++++|||++++++++++++++++++++|+|+.+++++.+||++++||||| ||+|||.+
T Consensus 351 ~i~~~~~~QWFi~~~~~~~~~~~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRq~~WG~pIP~~ 416 (874)
T PRK05729 351 VIEPYLSDQWFVKMKPLAKPALEAVENGEIKFVPERWEKTYFHWMENIQDWCISRQLWWGHRIPAW 416 (874)
T ss_pred eEEEEecCcceEehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceeeeecccCCcccEE
Confidence 999999999999999999999999987899999999999999999999999999 99999964
No 11
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.2e-42 Score=317.37 Aligned_cols=140 Identities=21% Similarity=0.460 Sum_probs=136.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||++|++||||++++||++|+|++..+.|+|+.+++||++|++.|+++|++.+.+++.|++|||||||+
T Consensus 317 ~V~~aPahg~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~v~eA~~~Ii~~L~~~g~l~~~~~~~h~~p~c~R~g~ 396 (975)
T PRK06039 317 IVHIAPAFGEDDFEVGKKYGLPVVCPVDDDGRFTEEVPDYAGKFVKDADKEIIRDLKERGLLFKAETYEHSYPHCWRCDT 396 (975)
T ss_pred ceeeCCCCChHHHHHHHHcCCCccceeCCCceEcCCCccccCCCHHHhhHHHHHHHHhCCCEeeeeeecCCCCEeCCCCC
Confidence 69999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchH-HHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTK-TWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~-~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
|+++++++||||++++++++++++++ +++|+|+++++ ++.+||++++||||| ||+|||++
T Consensus 397 pv~~~~~~qWFi~~~~~k~~ll~~~~--~i~~~P~~~~~~~~~~wl~~l~DW~ISRqr~WG~PIPiw 461 (975)
T PRK06039 397 PLIYYATESWFIRVTKIKDRMLELNQ--KINWYPEHIKDGRFGKWLENARDWNISRNRYWGTPLPIW 461 (975)
T ss_pred EEEEEecCeeeEecHHHHHHHHHhhC--CeEEECcccchhhHHHHHhcCccceeeeccccCCcceEE
Confidence 99999999999999999999999987 69999999999 999999999999999 99999974
No 12
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.3e-42 Score=316.50 Aligned_cols=141 Identities=23% Similarity=0.326 Sum_probs=136.3
Q ss_pred CeEeCCCCCHHHHHHHHHcCC-CccceeCCCceEecCCCC--------CCCccHHHHHHHHHHHHHHCCCeeeeeeeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNL-PLITVFNEEGVIIGDYGE--------FTGMKRFDARTRVTEVLTEKGLYRGTVSHAMV 71 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L-~~~~~id~~G~~~~~~~~--------f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~ 71 (164)
|||+|||||++||+++++||| |+.++||++|+|++..+. |.|+.+++||+.|++.|+++|++++.++|.|+
T Consensus 346 ~Vh~aPahg~~Dy~~~~~~~l~~~~~~vd~~G~~~~~~~~~~g~~v~~~~G~~~~ea~~~Ii~~L~~~g~l~~~~~~~h~ 425 (961)
T PRK13804 346 FVHTAPGHGREDFNVWMKYGRTEIPVTVDEDGFYTENAPGFGGARVIDDEGKKYGDANKAVIEKLIEAGLLLARGRLKHS 425 (961)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcccccCCCCeEEccCCCccccccccccCCcchhhhhHHHHHHHHhCCCcccccceecC
Confidence 699999999999999999999 999999999999987776 89999999999999999999999999999999
Q ss_pred cceecCCCCeeEEcccCeeeeeccH-------HHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcc
Q psy953 72 VPLCSRSKDVVEPLLKPQWYVRTGE-------MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQP 140 (164)
Q Consensus 72 ~p~c~R~g~~i~~~~~~QWFi~~~~-------~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP 140 (164)
+|||||||+|+++++++|||+++++ ++++++++++ +++|+|+++++++.+||++++||||| ||+|||
T Consensus 426 yp~~wR~~~pii~r~t~QWFi~~~~~~~~~~~~k~~al~~i~--~v~~~P~~~~~r~~~~i~~~~DWcISRQR~WG~PIP 503 (961)
T PRK13804 426 YPHSWRSKKPVIFRNTPQWFISMDKDLGDGTTLRSRALDAID--KTRFVPAAGQNRLYNMIEDRPDWVISRQRAWGVPIP 503 (961)
T ss_pred CCccCCCCCeEEEeccccccEEcCCcccchHHHHHHHHHHHh--ccEEECHHHHHHHHHHHhcCccceeeeeccCCceee
Confidence 9999999999999999999999998 9999999997 79999999999999999999999999 999999
Q ss_pred ccc
Q psy953 141 FRE 143 (164)
Q Consensus 141 ~~~ 143 (164)
++.
T Consensus 504 ~~~ 506 (961)
T PRK13804 504 IFV 506 (961)
T ss_pred EEE
Confidence 853
No 13
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=100.00 E-value=9.3e-42 Score=310.49 Aligned_cols=153 Identities=36% Similarity=0.666 Sum_probs=143.9
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||+++++||||++++||++|+|+++++.|+|+++++||++|++.|+++|++.+.+++.|++|+|||||+
T Consensus 269 ~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~~~~~~G~~~~~ar~~i~~~L~~~g~l~~~~~~~~~~p~~~R~g~ 348 (861)
T TIGR00422 269 AVKVTPAHDFNDYEWGKRHNLEFINILDEDGLLNENAGKYQGLTRFEARKKIVEDLKEEGLLVKIEPHTHNVGTCWRSGT 348 (861)
T ss_pred ceEecCCCChHHHHHHHHcCCCccceeCCCCeEcCCCcccCCcCHHHhHHHHHHHHHhCCCeeeeeeeeccCCEeCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcccccCCCeeee
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSVEDPRTLWS 156 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~~~~~~~~~ 156 (164)
++++++++||||+++++++++++++++++++|+|+++++++.+||++++||||| ||+|||++.. .+.+++||
T Consensus 349 ~ve~~~~~qWFi~~~~~~~~~~~~~~~~~i~~~P~~~~~~~~~wl~~l~DW~ISRq~~WG~piP~w~~----~~~~~~~v 424 (861)
T TIGR00422 349 VVEPLLSKQWFVKVEKLADKALEAAEEGEIKFVPKRMEKRYLNWLRNIKDWCISRQLIWGHRIPVWYC----KECGEVYV 424 (861)
T ss_pred EEEEEecCcceEecHHHHHHHHHHhhcCCeEEEChHHHHHHHHHHhccccceeeeecccCCcceEEEE----CCCCcEEe
Confidence 999999999999999999999999987789999999999999999999999999 9999997531 23445555
Q ss_pred e
Q psy953 157 P 157 (164)
Q Consensus 157 ~ 157 (164)
+
T Consensus 425 ~ 425 (861)
T TIGR00422 425 A 425 (861)
T ss_pred c
Confidence 4
No 14
>KOG0432|consensus
Probab=100.00 E-value=2.7e-42 Score=303.56 Aligned_cols=157 Identities=51% Similarity=0.895 Sum_probs=146.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
||+++||||+.||++|+||||++++||+++|.+++.+++|.||++|+||++|++.|++.|++.+.+++.+.+|.|+|||+
T Consensus 327 aVKITPaHd~nDyEvgkRh~L~~~ni~~~dG~l~~~~gef~Gm~RFeAR~kvv~~L~e~gL~~g~~~h~mvlpiCSRsgD 406 (995)
T KOG0432|consen 327 AVKITPAHDPNDYEVGKRHNLEFINIFTDDGLLNNVCGEFKGMKRFEAREKVVEKLKELGLYVGKENHPMVLPICSRSGD 406 (995)
T ss_pred ceEecCCCChhHHHHHHhcCCCceeEEcCCCceeccchhccCcHHHHHHHHHHHHHHHhhhhhccCCCceeccccCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcccc-cCCCeee
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSV-EDPRTLW 155 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~-~~~~~~~ 155 (164)
+|||++++|||++|+++++++++++++|++++.|+..+++|..|+++++||||| ||.+||.+--.+.- ..+.+-|
T Consensus 407 VIEpllkpQW~v~c~ema~~A~~av~sG~L~i~P~~~~k~w~~W~~~i~DWCiSRQLWWGHrIPAy~v~~~~~~~ee~~W 486 (995)
T KOG0432|consen 407 VIEPLLKPQWFVSCKEMAKKALKAVESGKLEILPEFHEKEWYRWLENIRDWCISRQLWWGHRIPAYFVNLSDGRAEEDYW 486 (995)
T ss_pred cccccccchheeehHHHHHHHHHHHhcCCeEECchHHHHHHHHHHhhccccchhhhhhhccccceeeeecccCCCcccee
Confidence 999999999999999999999999999999999999999999999999999999 99999987322211 2346667
Q ss_pred ee
Q psy953 156 SP 157 (164)
Q Consensus 156 ~~ 157 (164)
|-
T Consensus 487 vv 488 (995)
T KOG0432|consen 487 VV 488 (995)
T ss_pred EE
Confidence 64
No 15
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.3e-41 Score=313.49 Aligned_cols=142 Identities=39% Similarity=0.725 Sum_probs=138.8
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
+||+|||||++||+++++||||++++||++|+|++..+.|.|+++++||++|++.|+++|++.+.+.|.|++||||||++
T Consensus 286 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~~~Gl~~~ear~~Ii~~L~~~g~l~~~~~~~h~~~~c~R~~~ 365 (1052)
T PRK14900 286 AVKVTPAHDFNDFEVGKRHGLEMITVIGPDGRMTAEAGPLAGLDRFEARKEVKRLLAEQGLDRGAKPHVLPLGRCQRSAT 365 (1052)
T ss_pred eEEecCCCChhHHHHHHHcCCCccceECCCcEEecCCcccCCcCHHHHHHHHHHHHHhCCCeecceeeeccCceeCCCCc
Confidence 69999999999999999999999999999999998889999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
+|++++++||||+++.+++++++.+++++++|+|+++++++.+||++++||||| ||+|||.+
T Consensus 366 ~ie~~~s~qWFi~l~~~k~~~~~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~PIP~w 431 (1052)
T PRK14900 366 ILEPLLSDQWYVRIEPLARPAIEAVEQGRTRFIPEQWTNTYMAWMRNIHDWCISRQLWWGHQIPAW 431 (1052)
T ss_pred eEEEEeccceeeehHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEeecCCCceeCeE
Confidence 999999999999999999999999987789999999999999999999999999 99999976
No 16
>PLN02943 aminoacyl-tRNA ligase
Probab=100.00 E-value=3e-40 Score=302.52 Aligned_cols=139 Identities=40% Similarity=0.695 Sum_probs=133.0
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||+++++||||++++||++|+|++. .|+.+++||++|++.|+++|++.+.+++.|++|+|||||+
T Consensus 325 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~----~g~~~~ear~~iv~~L~~~g~l~~~e~~~~~~p~c~R~~~ 400 (958)
T PLN02943 325 VLKISPGHDHNDYLLARKLGLPILNVMNKDGTLNEV----AGLYWFEAREKLWSDLEETGLAVKKEPHTLRVPRSQRGGE 400 (958)
T ss_pred eEEeCCCCChHHHHHHHHcCCCceeeeCCCceeecc----CCccHHHHHHHHHHHHHHCCCeeeeeeeecCCCeeCCCCc
Confidence 699999999999999999999999999999999864 4556999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCccccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRE 143 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~ 143 (164)
+|++++++|||++++++++++++++++++++|+|+.+++++.+||++++||||| ||+|||++.
T Consensus 401 ~Ie~~~~~QWFi~~~~l~~~~l~~v~~~~i~~~P~~~~~~~~~wl~~l~DWcISRQr~WG~pIP~w~ 467 (958)
T PLN02943 401 VIEPLVSKQWFVTMEPLAEKALKAVENGELTIIPERFEKIYNHWLSNIKDWCISRQLWWGHRIPVWY 467 (958)
T ss_pred EeEEEeccceeEEHHHHHHHHHHHHhcCCcEEEChHHHHHHHHHHhcCccceEEEecCCCCccCcee
Confidence 999999999999999999999999987789999999999999999999999999 999999753
No 17
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=100.00 E-value=4e-40 Score=299.87 Aligned_cols=140 Identities=24% Similarity=0.437 Sum_probs=134.2
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCC-------CCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecc
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-------EFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVP 73 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~-------~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p 73 (164)
+||+|||||++||++|++||||++++||++|+|+...+ .|.|+++++||++|++.|+++|++.+.+++.|++|
T Consensus 328 ~V~~~Pah~~~D~~~~~~~~l~~~~~vd~~g~~~~~~~~~~g~~~~~~g~~~~~a~~~ii~~L~~~g~l~~~~~~~h~~p 407 (861)
T TIGR00392 328 IVHTAPGHGEEDYEIGKKYGLEVLSPVDEKGVYTEGVNDFQGRFVKDADKDIIKANKIIIEQLKDKGLLLKAEKITHSYP 407 (861)
T ss_pred eeEcCCCCCHHHHHHHHHcCCCcccccCCCceECCcCccccccccccCCccHHHhHHHHHHHHHhCCCeeeeeeEecCCC
Confidence 69999999999999999999999999999999875543 48999999999999999999999999999999999
Q ss_pred eecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 74 LCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 74 ~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
||||||+++++++++||||++++++++++++++ +++|+|+++++++.+||++++||||| ||+|||++
T Consensus 408 ~~~R~~~~v~~~~~~QWFi~~~~~k~~~l~~~~--~i~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~ 478 (861)
T TIGR00392 408 HCWRTKTPVIYRATEQWFIKTKDIKDQMLEQIK--KVNWVPEWGEGRFGNWLENRPDWCISRQRYWGIPIPIW 478 (861)
T ss_pred ccCCCCCEEEEecCccccEEcHHHHHHHHHHhC--CcEEECchHHHHHHHHHhCCCcceeeccccCCCeeeEE
Confidence 999999999999999999999999999999997 79999999999999999999999999 99999984
No 18
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.5e-39 Score=291.81 Aligned_cols=140 Identities=25% Similarity=0.412 Sum_probs=136.4
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
+||++|+||++||++|++||||++++||++|+|+++++.|+|+++++||++|++.|+++|++.+.+++.|++|+|||||+
T Consensus 269 ~V~~~p~hd~~D~~~~~~~~l~~~~~i~~~G~~~~~~g~~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~~~~p~~~r~~~ 348 (800)
T PRK13208 269 AVMICTFGDKTDVTWWRELNLPTRIIIDEDGRMTEAAGKLAGLTIEEARKKIVEDLKSGGLLGKQEPIKHNVKFCERCDT 348 (800)
T ss_pred eEEeCCCCCHHHHHHHHHcCCCcccccCCCceEecCCcccCCCCHHHHHHHHHHHHHhCCCeeceeeeeccCCccCCCCC
Confidence 69999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCC-Ccccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNR-EKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~-DWcIS----wG~~iP~~ 142 (164)
++++++++||||++++++++++++++ +++|+|+++++++.+||++++ ||||| ||+|||++
T Consensus 349 ~v~~~~~~qwfl~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~l~~~~~DW~ISRqr~WG~pIP~~ 413 (800)
T PRK13208 349 PLEILVTRQWFIKVLDLKEELLERGK--EINWYPEHMRVRLENWIEGLNWDWCISRQRYFGTPIPVW 413 (800)
T ss_pred EEEEeccceeeEeCHHHHHHHHHhhc--CcEEECHHHHHHHHHHHHhcCCCceeeeccccCCcceEE
Confidence 99999999999999999999999997 799999999999999999987 99999 99999973
No 19
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=7.3e-37 Score=278.99 Aligned_cols=143 Identities=24% Similarity=0.412 Sum_probs=131.0
Q ss_pred CeEeCCCCCHHHHHHHHHcC--------CCcccee-----------------------C---------------CCceEe
Q psy953 1 AVKISPGHDHNDYEVAQRLN--------LPLITVF-----------------------N---------------EEGVII 34 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~--------L~~~~~i-----------------------d---------------~~G~~~ 34 (164)
+||+|||||++||+++++++ |+++.++ | ++|+|+
T Consensus 264 vV~~~Pah~~~Dy~~~~~~~~~~~~~~~l~~i~ii~v~~~g~~~a~~~~~~~~~~~~~d~~l~~a~~~~y~~~f~~G~~~ 343 (897)
T PRK12300 264 VVMSVPAHAPYDYVALRDLKKNKELLDVIEPIPLIEVEGYGEFPAKEVVEKLGIKSQEDPELEEATKEVYRAEFHKGVLK 343 (897)
T ss_pred eEEeCCCCCHHHHHHHHHhccccccccccCCcceEecCCcCcccHHHHHHHhCCCCccchhHHHHHHHhhhccccceEEe
Confidence 69999999999999999998 7766555 3 489999
Q ss_pred cCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcc-cCeeeeecc--HHHHHHHHHHhCCCcE
Q psy953 35 GDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLL-KPQWYVRTG--EMAEKAVQAVKTGELK 111 (164)
Q Consensus 35 ~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~-~~QWFi~~~--~~~~~~l~~i~~~~i~ 111 (164)
+..+.|+|+.+++||++|++.|+++|++.+.+.+.| +|+|||||+++++++ ++||||+++ ++|++++++++ +++
T Consensus 344 ~~~g~~~G~~v~eA~~~I~~~L~~~g~~~~~~~~~~-~~~~~R~~~~~i~~~~~~QWFi~~~~~~~k~~~~~~~~--~~~ 420 (897)
T PRK12300 344 ENTGEYAGKPVREAREKITKDLIEKGIADIMYEFSN-RPVYCRCGTECVVKVVKDQWFIDYSDPEWKELAHKALD--NME 420 (897)
T ss_pred ecccCcCCeEHHHHHHHHHHHHHHCCCeEEEEecCC-CCcCcCCCCEEEEEecCCceEEEcCcHHHHHHHHHHHc--cCE
Confidence 888999999999999999999999999999888877 578889999999865 699999998 79999999997 799
Q ss_pred EeCccchHHHHHHHhcCCCcccc----cCCCcccccCcc
Q psy953 112 IIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTL 146 (164)
Q Consensus 112 ~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~ 146 (164)
|+|+++++++.+||++++||||| |||||||++.|+
T Consensus 421 ~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpiP~~~~w~ 459 (897)
T PRK12300 421 IIPEEYRKEFENTIDWLKDRACARRRGLGTRLPWDEEWI 459 (897)
T ss_pred EECHHHHHHHHHHHhhhhhcceeeccccCCcCCccCCEE
Confidence 99999999999999999999999 999999987765
No 20
>PLN02959 aminoacyl-tRNA ligase
Probab=100.00 E-value=2.3e-35 Score=272.77 Aligned_cols=151 Identities=21% Similarity=0.315 Sum_probs=128.3
Q ss_pred CeEeCCCCCHHHHHH----------HHHcCC--------CccceeCCCce------------------------------
Q psy953 1 AVKISPGHDHNDYEV----------AQRLNL--------PLITVFNEEGV------------------------------ 32 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~----------~~~~~L--------~~~~~id~~G~------------------------------ 32 (164)
+||+|||||++||.. +++||| +++.+||..|.
T Consensus 394 vV~~vPah~pdDy~~~~dl~~k~~~~~kygi~~~~~~~~~~i~iid~~g~G~~~a~~~~~~~~i~s~~d~~~l~~a~~~~ 473 (1084)
T PLN02959 394 VVTSVPSDSPDDYMALSDLKAKPALRAKYGVKDEWVLPFEVVPIINIPEFGDKSAEKVCEDLKIKSQNDKEKLAEAKRLT 473 (1084)
T ss_pred eEEeCCCCCHHHHHHHHhhccchhHHHHcCCCcccccccCCcCccccCCCCcchhHHHHHhhcccccchhhHHHHHhhhh
Confidence 699999999999998 578888 56888886552
Q ss_pred ----EecC---CCCCCCccHHHHHHHHHHHHHHCCCeee-eeeeeeecceecCCCCeeEEcccCeeeeecc--HHHHHHH
Q psy953 33 ----IIGD---YGEFTGMKRFDARTRVTEVLTEKGLYRG-TVSHAMVVPLCSRSKDVVEPLLKPQWYVRTG--EMAEKAV 102 (164)
Q Consensus 33 ----~~~~---~~~f~G~~~~~ar~~Iie~L~~~g~l~~-~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~--~~~~~~l 102 (164)
|.+. .+.|.|+.+++||++|++.|+++|++.. .++ ..|+|+|||+++++++++||||+++ +||++++
T Consensus 474 Y~~~f~~g~m~~g~~~G~~v~eAr~~Ii~~L~~~G~l~~~~ep---~~pv~~R~g~~~~v~l~~QWFi~~~~~~~k~~a~ 550 (1084)
T PLN02959 474 YLKGFTDGTMLVGEYAGRKVQEAKPLIKKKLIEAGQAILYSEP---EKKVMSRSGDECVVALTDQWYLTYGEEEWKKKAE 550 (1084)
T ss_pred hhhccccccccCcCcCCcCHHHHHHHHHHHHHhCCCceeeeEc---CCCeEECCCCEEEEeecCCeeEECCchHHHHHHH
Confidence 2222 5789999999999999999999998774 343 2589999999999999999999998 6999999
Q ss_pred HHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcc-cccCCCeeee
Q psy953 103 QAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTL-SVEDPRTLWS 156 (164)
Q Consensus 103 ~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~-~~~~~~~~~~ 156 (164)
++++ +++|+|++++++|.+||+|++||||| ||+||||++.++ ...++.+.|.
T Consensus 551 ~~l~--~v~~~P~~~~~~~~~wl~~l~DWciSRQr~wGtpIPWd~~~~ieslsdstiy~ 607 (1084)
T PLN02959 551 KCLS--KMNLYSDETRHGFEHTLGWLNQWACSRSFGLGTRIPWDEQFLIESLSDSTIYM 607 (1084)
T ss_pred HHHc--ccEEECHHHHHHHHHHHhCCCceeecccccCCCcCCcccceeeccCCCCceee
Confidence 9997 79999999999999999999999999 999999887653 2233556653
No 21
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=100.00 E-value=2.5e-34 Score=263.38 Aligned_cols=155 Identities=21% Similarity=0.363 Sum_probs=131.3
Q ss_pred CeEeCCCCCHHHHHHHHHc--------------CCCccceeCC-------------------------------------
Q psy953 1 AVKISPGHDHNDYEVAQRL--------------NLPLITVFNE------------------------------------- 29 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~--------------~L~~~~~id~------------------------------------- 29 (164)
+||+|||||++||++++++ +|+++.+++.
T Consensus 304 vV~~~Pah~p~Dy~~~~~l~~~~~~~gi~~~~~~~~~i~ii~~~~~g~~~a~~~~~~~~i~~~~d~~~l~~a~~~~y~~~ 383 (938)
T TIGR00395 304 VVMSVPAHAPDDYIALEDLLHDPEYLGIKPVVIDIEPVPLIHTDGYGDLPAKEIVEEKGIKSQKDKNLLEEATKILYKEE 383 (938)
T ss_pred eEEeCCCCCHHHHHHHHHhhhcchhcCCcchhcccCCccceecCCCCcccHHHHHHHhcCCCchhhhHHHHHHHHHhhhh
Confidence 6999999999999998874 3566666532
Q ss_pred --CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEc-ccCeeeeecc--HHHHHHHHH
Q psy953 30 --EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPL-LKPQWYVRTG--EMAEKAVQA 104 (164)
Q Consensus 30 --~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~-~~~QWFi~~~--~~~~~~l~~ 104 (164)
+|+|+..++.|+|+++++||++|++.|+++|++.+.+.+.+ .|+|||||+++++. +++||||+++ +++++++++
T Consensus 384 f~~G~m~~~~~~~~G~~v~ear~~i~~~L~~~g~~~~~~~~~~-~~v~~R~g~~~vv~~~~~QWFi~~~~~~~k~~~~~~ 462 (938)
T TIGR00395 384 YHTGVMIYNIPPYKGMKVSEAKEKVKADLIDAGLADVMYEFSE-SPVICRCGTDCIVKVVEDQWFVKYSDESWKELAHEC 462 (938)
T ss_pred ccCceeccCCcccCCcCHHHhHHHHHHHHHHCCCceEeeecCC-CCcEecCCCeEEEeccCCCCeEEcCcHHHHHHHHHH
Confidence 47777677799999999999999999999999998766533 57889999999986 9999999999 599999999
Q ss_pred HhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcccc-cCCCeeeeec
Q psy953 105 VKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSV-EDPRTLWSPY 158 (164)
Q Consensus 105 i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~-~~~~~~~~~~ 158 (164)
++ +++|+|+.+++++.+||++++||||| ||+||||++.++.. -++.|+|+-|
T Consensus 463 l~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WGtpIP~d~~~~ieslsdstiY~~~ 519 (938)
T TIGR00395 463 LE--GMRIIPEEVKNAFEGKIDWLKDWACCRRYGLGTRLPWDEKWLIESLSDSTIYMAY 519 (938)
T ss_pred Hh--cCEEeCHHHHHHHHHHHhhhhhcccccccccCcccceeecEEeeecchhhhhhhh
Confidence 98 79999999999999999999999999 99999998765432 2345665443
No 22
>KOG0433|consensus
Probab=100.00 E-value=2.9e-34 Score=249.46 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=132.4
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCC-CCCCccHH-HHHHHHHHHHHHCCCeeeeeeeeeecceecCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYG-EFTGMKRF-DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRS 78 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~-~f~G~~~~-~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~ 78 (164)
+||+|||||++||.+|.++|||+.+++|++|+|+.+++ .+.|+.+. |..+.|+..|. ..+++.++|.|+||+.|||
T Consensus 341 LVHTAP~HG~eDYlv~l~~~l~~~s~VD~~G~yT~ea~~~l~Gk~VL~eG~k~vl~~l~--~~iv~~sky~HsYPYDWRT 418 (937)
T KOG0433|consen 341 LVHTAPAHGFEDYLVAISKGLRVESFVDSRGCYTREAGHDLDGKEVLGEGQKIVLRLLN--HDIVHVSKYVHSYPYDWRT 418 (937)
T ss_pred eeecCCCCChHHHHHHhhcCCCcccccCCCCceecccccccccchhhccccHhHHHHHh--hhhhhhhcccccCCccccc
Confidence 59999999999999999999999999999999998887 88999995 78999999998 6788999999999999999
Q ss_pred CCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCccccc
Q psy953 79 KDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRE 143 (164)
Q Consensus 79 g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~ 143 (164)
+.|++.|+++|||+++++++..++++++ +++|+|....+++..++..|++|||| ||+|||...
T Consensus 419 KKPvIiRAseQWFi~~e~~k~~A~~al~--~Vk~~P~~~~~rl~~~~~~R~~WCISRQR~WGvPIP~ly 485 (937)
T KOG0433|consen 419 KKPVIIRASEQWFIDVEEIKKRASMALD--DVKVAPGDSDLRLKQLVTTRPSWCISRQRVWGVPIPALY 485 (937)
T ss_pred CCceEEecchhheeeHHhhhhHHHHHHh--hceeCCcchHHHHHHHHcCCCcceeeeccccCCcceeEE
Confidence 9999999999999999999999999998 79999999999999999999999999 999999653
No 23
>KOG0434|consensus
Probab=99.97 E-value=3.3e-32 Score=235.59 Aligned_cols=140 Identities=20% Similarity=0.355 Sum_probs=133.8
Q ss_pred CeEeCCCCCHHHHHHHHHcCC-----CccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeeccee
Q psy953 1 AVKISPGHDHNDYEVAQRLNL-----PLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLC 75 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L-----~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c 75 (164)
+||.|||.|+.||..|...|+ -+.++||++|+|+.....|+|..+++|.+.|++.|++.|.+++...+.|+||+|
T Consensus 322 iVH~AP~FGe~Dy~~c~~~giI~~d~~~~cpVDe~G~~Tsev~dfaG~YVKDaDK~Ii~~lk~~g~lv~~~~i~HsYPFC 401 (1070)
T KOG0434|consen 322 IVHQAPAFGEEDYRACVANGIIRKDSLPPCPVDESGLFTSEVTDFAGQYVKDADKLIIRSLKASGRLVKASQITHSYPFC 401 (1070)
T ss_pred eeecCCccChhhHHHHHHcCcccCCCCCCCccccCCccccccccccceeeccchHHHHHHHHhcCceeeeeeeeeccCce
Confidence 599999999999999999987 578999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccch-HHHHHHHhcCCCcccc----cCCCcccc
Q psy953 76 SRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT-KTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 76 ~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k-~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
|||.+|+++++.|.||++++.+.+++|+..+ +..|+|+..| +||.|||++.+||.|| ||||||.+
T Consensus 402 WRSDTPLiYraVPsWFVrVk~~v~~ll~nn~--~t~WVP~~ikeKRF~NWL~nARDW~iSRnR~WGTPIpLW 471 (1070)
T KOG0434|consen 402 WRSDTPLIYRAVPSWFVRVKNIVDQLLRNNM--KTHWVPQNIKEKRFANWLKNARDWNISRNRYWGTPIPLW 471 (1070)
T ss_pred ecCCChHHHhhccHhhhhHHHHHHHHHhccc--ccccCChhhhHHHHHHHHhhhhhcccccccccCCCcceE
Confidence 9999999999999999999999999999865 8999999987 6999999999999999 99999965
No 24
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=99.79 E-value=1.9e-19 Score=163.94 Aligned_cols=63 Identities=37% Similarity=0.671 Sum_probs=58.2
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeC------------CCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFN------------EEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRG 64 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id------------~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~ 64 (164)
|||+|||||++||++|++||||++++|+ ++|+|++ ++.|+|+++++|+++|++.|+++|++.+
T Consensus 331 ~V~~~Pahd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~G~~~~-~~~~~Gl~~~~A~~~Ii~~L~~~g~~~~ 405 (842)
T TIGR00396 331 AVMGVPAHDERDFEFAQKYKLPIKVVIDPAGKNLKTQAFTEDGVLVN-SGEFNGLNSSEAREAIIAMLEKEGKGKR 405 (842)
T ss_pred eEEEcCCCCHHHHHHHHHhCCCcceeeCCcccccccccccCCceEec-chhcCCCCHHHHHHHHHHHHHHcCCCCc
Confidence 7999999999999999999999999998 3788884 5899999999999999999999999653
No 25
>PLN02563 aminoacyl-tRNA ligase
Probab=99.77 E-value=7.6e-19 Score=161.30 Aligned_cols=62 Identities=35% Similarity=0.577 Sum_probs=54.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeC--------------CCceEecCCCC----CCCccHHHHHHHHHHHHHHCCCe
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFN--------------EEGVIIGDYGE----FTGMKRFDARTRVTEVLTEKGLY 62 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id--------------~~G~~~~~~~~----f~G~~~~~ar~~Iie~L~~~g~l 62 (164)
|||+|||||++||+||++||||++++|+ ++|+|.+ ++. |+|+++++|+++|++.|+++|++
T Consensus 418 aVm~~PaHd~~D~~~a~k~~Lpi~~vI~~~d~~~~~~~~~y~~~G~l~n-s~~~~~~~~Gl~~~eA~~~Ii~~L~~~g~~ 496 (963)
T PLN02563 418 AIMAVPAHDTRDFEFAQKFDLPIKWVVKPADGNEDDAEKAYTGEGVIVN-SSSSGLDINGLSSKEAAKKVIEWLEETGNG 496 (963)
T ss_pred eEEEcCCCCHHHHHHHHHcCCCceeeeccCccccccccccccCceeEec-CCCcccccCCcCHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999999999994 2466653 444 99999999999999999999997
Q ss_pred e
Q psy953 63 R 63 (164)
Q Consensus 63 ~ 63 (164)
.
T Consensus 497 ~ 497 (963)
T PLN02563 497 K 497 (963)
T ss_pred C
Confidence 3
No 26
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=99.76 E-value=1.1e-18 Score=158.48 Aligned_cols=61 Identities=38% Similarity=0.659 Sum_probs=55.7
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeC--------------CCceEecCCCCCCCccHHHHHHHHHHHHHHCCCe
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFN--------------EEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLY 62 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id--------------~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l 62 (164)
|||+|||||++||++|++||||++++|| ++|+|.+ .+.|+|+++++||++|++.|+++|++
T Consensus 333 ~V~~~Pah~~~D~~~~~~~~L~~~~~i~~~g~~~~~~~~~~~~~g~~~~-~~~~~Gl~~~~a~~~Ii~~L~~~g~~ 407 (805)
T PRK00390 333 AVMAVPAHDQRDFEFAKKYGLPIKPVIEPGDGDEDISEEAYTGDGVLIN-SGELDGLDSEEAKEAIIAWLEEKGLG 407 (805)
T ss_pred eEEEcCCCCHHHHHHHHHcCCCceeeeCCCCcccccccccccCCeEEEe-ccccCCCCHHHHHHHHHHHHHHcCCC
Confidence 6999999999999999999999999997 4677764 48899999999999999999999994
No 27
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.75 E-value=7.9e-18 Score=141.66 Aligned_cols=98 Identities=39% Similarity=0.602 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeee----------eecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeC
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHA----------MVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIP 114 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~----------~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P 114 (164)
..+.-+.++..|.++|++...+.-. ...-+|+|||++++++.++|||++++++++++++.+++++++|+|
T Consensus 116 ~~~~v~~~f~~L~~~G~iy~~~~~~~yc~~~~t~l~~~evc~~cg~~~~~~~~~qwf~~l~~~~~~l~~~~~~~~~~~~P 195 (382)
T cd00817 116 LSRAVQEAFVRLYEKGLIYRDNRLVNWCPKLRTAISDIEVCSRSGDVIEPLLKPQWFVKVKDLAKKALEAVKEGDIKFVP 195 (382)
T ss_pred HHHHHHHHHHHHHHCCCEEeeeeEEeecCCcCCCCCcchhcccCCCeEEEEecCeeEEehHHHHHHHHHHHhcCCcEEEC
Confidence 3467788999999999998755421 112359999999999999999999999999999999865699999
Q ss_pred ccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 115 DHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 115 ~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
++.++++.+||++++||||| ||+|||++
T Consensus 196 ~~~~~~~~~~l~~l~Dw~ISR~~~WGipvP~~ 227 (382)
T cd00817 196 ERMEKRYENWLENIRDWCISRQLWWGHRIPAW 227 (382)
T ss_pred hHHHHHHHHHHhhCccceeeeccccCCccceE
Confidence 99999999999999999999 99999974
No 28
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.67 E-value=2.7e-16 Score=137.85 Aligned_cols=149 Identities=12% Similarity=0.095 Sum_probs=109.3
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCCCc--------eEecCCCCC-CCc--cHHHHHHHHHHHHHHCCCeeeeeee---
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNEEG--------VIIGDYGEF-TGM--KRFDARTRVTEVLTEKGLYRGTVSH--- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~~G--------~~~~~~~~f-~G~--~~~~ar~~Iie~L~~~g~l~~~~~~--- 68 (164)
..+..||..-..-|.+.|+++....++.. .+.-..+.| .-. ...++-..+++.|.++|++...+.-
T Consensus 48 ~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~i~~d~~~~t~~~~~~~~~~~~~~~L~~~G~~y~~~~~~~~ 127 (556)
T PRK12268 48 SGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFKKLGISYDLFTRTTSPNHHEVVQEFFLKLYENGYIYKKTIEQAY 127 (556)
T ss_pred CcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCCCcCCCCHHHHHHHHHHHHHHHHCCCeEEeeeEEEe
Confidence 44556777777778888887766554311 111012222 112 3456778899999999998754331
Q ss_pred ----------------------------------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCC
Q psy953 69 ----------------------------------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTG 108 (164)
Q Consensus 69 ----------------------------------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~ 108 (164)
.+..|+|+|||++++++.++|||+++++++++++++++
T Consensus 128 ~~~~~~~l~~~~v~g~cp~c~~~~~~G~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~qwF~~l~~~~~~l~~~~~-- 205 (556)
T PRK12268 128 CPSDGRFLPDRYVEGTCPYCGYEGARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFLDLPAFAERLRAWIE-- 205 (556)
T ss_pred cCCCCcCcCccceeccCCCCCCcccCCchhhhccccCChHHhcCCccccCCCcCeEEecceEEEEhHHHHHHHHHHHh--
Confidence 01145888999999999999999999999999999997
Q ss_pred CcEEeCccchHHHHHHHh-cCCCcccc----cCCCcccccCcccccCCCeeeeec
Q psy953 109 ELKIIPDHHTKTWYQWLE-NNREKKDR----IGESQPFRERTLSVEDPRTLWSPY 158 (164)
Q Consensus 109 ~i~~~P~~~k~~~~~wl~-~~~DWcIS----wG~~iP~~~~~~~~~~~~~~~~~~ 158 (164)
++.++|+.+++++.+||+ +++||||| ||+||||+. .+++++||=+
T Consensus 206 ~~~~~p~~~~~~~~~~l~~~l~Dw~ISR~~~WGipiP~~~-----~~~~~iyvW~ 255 (556)
T PRK12268 206 SSGDWPPNVLNFTLNWLKEGLKPRAITRDLDWGIPVPWPG-----FEGKVFYVWF 255 (556)
T ss_pred hccCCCHHHHHHHHHHHhCCCCCcCceeeCCCCeeCCCCC-----CCCcEEEEee
Confidence 588999999999999999 89999999 999999442 2456777633
No 29
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.65 E-value=5.8e-16 Score=138.03 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=111.1
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCC--------ceEecCCCCC-C--CccHHHHHHHHHHHHHHCCCeeeeeeee-
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEE--------GVIIGDYGEF-T--GMKRFDARTRVTEVLTEKGLYRGTVSHA- 69 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~--------G~~~~~~~~f-~--G~~~~~ar~~Iie~L~~~g~l~~~~~~~- 69 (164)
|..+..||..--..|++.|.++..+++.. ..+.-..+.| . .....+..+.+++.|.++|.+...+.-.
T Consensus 47 ~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D~f~rTt~~~h~~~v~~~~~~L~~kG~IY~~~~~~~ 126 (648)
T PRK12267 47 LTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYDKFIRTTDERHKKVVQKIFEKLYEQGDIYKGEYEGW 126 (648)
T ss_pred ecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEe
Confidence 45667888877788888898887776631 1111012222 1 1224567789999999999988653310
Q ss_pred -------------eec-ceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHH-HHHhc-CCCccc
Q psy953 70 -------------MVV-PLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWY-QWLEN-NREKKD 133 (164)
Q Consensus 70 -------------~~~-p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~-~wl~~-~~DWcI 133 (164)
... ++|+|||.+++++.++|||++++++++++++.++++...+.|+..++.+. +||++ ++||||
T Consensus 127 yc~~~~~~l~~~~l~~~~~c~~cg~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~l~~~l~D~~I 206 (648)
T PRK12267 127 YCVSCETFFTESQLVDGGKCPDCGREVELVKEESYFFRMSKYQDRLLEYYEENPDFIQPESRKNEMINNFIKPGLEDLSI 206 (648)
T ss_pred ecCCCCccCChHHhccCCcCCCCCCcCeEEecceEEEEcHHHHHHHHHHHhhCCcccCCHHHHHHHHHHHhhCCCCCccc
Confidence 112 89999999999999999999999999999999975334456999999999 99998 999999
Q ss_pred c-----cCCCcccccCcccccCCCeeee
Q psy953 134 R-----IGESQPFRERTLSVEDPRTLWS 156 (164)
Q Consensus 134 S-----wG~~iP~~~~~~~~~~~~~~~~ 156 (164)
| ||+|+|.++ ++.+||
T Consensus 207 SR~~~~WGipvP~~~-------~~v~yV 227 (648)
T PRK12267 207 SRTSFDWGIPVPFDP-------KHVVYV 227 (648)
T ss_pred CCCCCCcceECCCCC-------CCEEEE
Confidence 9 999999875 456666
No 30
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=99.65 E-value=5.9e-16 Score=135.03 Aligned_cols=148 Identities=11% Similarity=0.132 Sum_probs=108.2
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc--------eEecCCCCC-CCcc--HHHHHHHHHHHHHHCCCeeeeee---
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG--------VIIGDYGEF-TGMK--RFDARTRVTEVLTEKGLYRGTVS--- 67 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G--------~~~~~~~~f-~G~~--~~~ar~~Iie~L~~~g~l~~~~~--- 67 (164)
|+.+..||..-...|++.|+++..+.+... .+.-..+.| ...+ ..++-..+++.|.++|++...+.
T Consensus 42 v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~~~~t~~~~~~~~v~~~~~~L~~kG~iY~~~~~v~ 121 (530)
T TIGR00398 42 VCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFDRFIRTTDEEHKEIVQKIFQKLKENGYIYEKEIKQL 121 (530)
T ss_pred ecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHCCCEEEeeeEEE
Confidence 455666777777777777777655554310 010011212 1122 45567789999999999875432
Q ss_pred ----------------------------------------eeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhC
Q psy953 68 ----------------------------------------HAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKT 107 (164)
Q Consensus 68 ----------------------------------------~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~ 107 (164)
..+..|+|+|||+++|++.++|||++++++++++++.+++
T Consensus 122 ~~~~~~~~l~~~~v~g~cp~c~~~~~~g~~ce~cg~~~~~~~l~~p~~~~~~~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 201 (530)
T TIGR00398 122 YCPECEMFLPDRYVEGTCPKCGSEDARGDHCEVCGRHLEPTELINPRCKICGAKPELRDSEHYFFRLSAFEKELEEWIRK 201 (530)
T ss_pred ecCCCCcCCchhhhcCCCCCCCCcccccchhhhccccCCHHHhcCCccccCCCcceEEecceEEEEhHHHHHHHHHHHHh
Confidence 1345788999999999999999999999999999999974
Q ss_pred C-CcEEeCccchHHHHHHHhc-CCCcccc-----cCCCcccccCcccccCCCeeee
Q psy953 108 G-ELKIIPDHHTKTWYQWLEN-NREKKDR-----IGESQPFRERTLSVEDPRTLWS 156 (164)
Q Consensus 108 ~-~i~~~P~~~k~~~~~wl~~-~~DWcIS-----wG~~iP~~~~~~~~~~~~~~~~ 156 (164)
+ ...+.|+.+++.+.+||++ ++||||| ||+|+|++++ +++||
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~l~d~~iSR~~~~WGipvP~~~~-------~~~yv 250 (530)
T TIGR00398 202 NPESGSPASNVKNKAQNWLKGGLKDLAITRDLVYWGIPVPNDPN-------KVVYV 250 (530)
T ss_pred CCccCCCcHHHHHHHHHHHhCCCCCccccCcCCCCCeeCCCCCC-------cEEEE
Confidence 2 2555688999999999999 9999999 9999998843 56666
No 31
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.60 E-value=4.4e-15 Score=123.21 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHH
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQW 124 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~w 124 (164)
..++-..+++.|.++|++...+. +..+ +++++.++|||++++++++++++.++ +++|+|+..++++.+|
T Consensus 117 ~~~~v~~~f~~L~~~G~iY~~~~-----~v~~----~v~~~~~~qwf~~l~~~~~~l~~~~~--~~~~~P~~~~~~~~~~ 185 (338)
T cd00818 117 YMESVWWVFKQLHEKGLLYRGYK-----VVPW----PLIYRATPQWFIRVTKIKDRLLEAND--KVNWIPEWVKNRFGNW 185 (338)
T ss_pred HHHHHHHHHHHHHHCCCEeccCC-----eeee----EEEEEecCeEEEEcHHHHHHHHHHHh--cCcEECHHHHHHHHHH
Confidence 44667889999999999986542 2223 89999999999999999999999997 6899999999999999
Q ss_pred HhcCCCcccc----cCCCcccc
Q psy953 125 LENNREKKDR----IGESQPFR 142 (164)
Q Consensus 125 l~~~~DWcIS----wG~~iP~~ 142 (164)
|++++||||| ||+|+|++
T Consensus 186 l~~l~dw~iSR~~~WGip~P~~ 207 (338)
T cd00818 186 LENRRDWCISRQRYWGTPIPVW 207 (338)
T ss_pred HhcchhcceeeecccCceeeEE
Confidence 9999999999 99999984
No 32
>KOG0437|consensus
Probab=99.60 E-value=2e-15 Score=132.73 Aligned_cols=121 Identities=26% Similarity=0.357 Sum_probs=100.3
Q ss_pred CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeeeeccH--HHHHHHHHHhC
Q psy953 30 EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGE--MAEKAVQAVKT 107 (164)
Q Consensus 30 ~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~~--~~~~~l~~i~~ 107 (164)
+|.|. .+.|.|..+.++...|-+.|.+.|.+.+...= .-++-+|||+.++.-+.+||||++++ ||.++.+.++
T Consensus 471 ~g~ml--ig~y~G~KVe~~K~~i~~~li~~g~a~~y~EP--EkqVmSRSGdeCiVAL~DQWYldYgE~eWKk~a~~cLe- 545 (1080)
T KOG0437|consen 471 EGTML--IGKYKGEKVEDAKPKIKTDLIETGDALKYNEP--EKQVMSRSGDECIVALCDQWYLDYGEAEWKKQAKECLE- 545 (1080)
T ss_pred cceEE--EeccccccHHhhhhHHHHHHHhcccceeecCc--chhhhccCCCceEEEeccchhhhcCcHHHHHHHHHHHh-
Confidence 57666 68999999999999999999999998864222 24566999999999999999999984 9999999998
Q ss_pred CCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCccccc--CCCeeeee
Q psy953 108 GELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSVE--DPRTLWSP 157 (164)
Q Consensus 108 ~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~~--~~~~~~~~ 157 (164)
.++-+-+..|+.|+.-|+|++.|.+| +||+||||+.++ || ++.|+|..
T Consensus 546 -~l~~f~dEtR~~fE~tLdWL~~wacsRsyGLGTrlPWD~qyL-vESLSDSTIYmA 599 (1080)
T KOG0437|consen 546 -NLNTFSDETRNGFEDTLDWLGQWACSRSYGLGTRLPWDEQYL-VESLSDSTIYMA 599 (1080)
T ss_pred -hhhccCHHHHHHHHHHHHHHHhhhhhccccCCCCCCCcHHHH-HHhcchhHHHHH
Confidence 58666677899999999999999777 999999998753 44 35555543
No 33
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.59 E-value=8.5e-15 Score=127.01 Aligned_cols=141 Identities=11% Similarity=0.114 Sum_probs=101.8
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc--------eEecCCCCC-C--CccHHHHHHHHHHHHHHCCCeeeeeeee-
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG--------VIIGDYGEF-T--GMKRFDARTRVTEVLTEKGLYRGTVSHA- 69 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G--------~~~~~~~~f-~--G~~~~~ar~~Iie~L~~~g~l~~~~~~~- 69 (164)
|..+..||..-..-|++.|.++..+.+... .+.-..+.| . .....++-..+++.|.++|++...+.-.
T Consensus 44 v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~ 123 (511)
T PRK11893 44 LTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDDFIRTTDPRHKEAVQEIFQRLLANGDIYLGKYEGW 123 (511)
T ss_pred cCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeee
Confidence 445666776666667777776655543211 000011222 1 1224567788999999999988654310
Q ss_pred ---------------eecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcE-EeCccchHHHHHHHhc-CCCcc
Q psy953 70 ---------------MVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELK-IIPDHHTKTWYQWLEN-NREKK 132 (164)
Q Consensus 70 ---------------~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~-~~P~~~k~~~~~wl~~-~~DWc 132 (164)
-..|+|+|||++++++.++|||++++.+++++.+.+++ ... +.|+..++.+.+||++ ++|||
T Consensus 124 ~~~~~~~~l~~~~l~~~~p~~~~~~~~~~~~~~~~~f~~l~~~~~~l~~~~~~-~~~~~~p~~~~~~~~~~l~~~~~D~~ 202 (511)
T PRK11893 124 YCVRCEEFYTESELIEDGYRCPPTGAPVEWVEEESYFFRLSKYQDKLLELYEA-NPDFIQPASRRNEVISFVKSGLKDLS 202 (511)
T ss_pred ccccccccCCHHHhcCCCCCCCCCCCcceEEecCeEEEEcHHHHHHHHHHHHh-CCCccCCHHHHHHHHHHHHCCCCCcc
Confidence 01178999999999999999999999999999999974 244 4699999999999996 99999
Q ss_pred cc-----cCCCccccc
Q psy953 133 DR-----IGESQPFRE 143 (164)
Q Consensus 133 IS-----wG~~iP~~~ 143 (164)
|| ||+|+|.++
T Consensus 203 isR~~~~WGipiP~~~ 218 (511)
T PRK11893 203 ISRTNFDWGIPVPGDP 218 (511)
T ss_pred cCCCCCCCCccCCCCC
Confidence 99 999999875
No 34
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.53 E-value=6e-14 Score=115.50 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=105.0
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCC--------ceEecCCCCCC-Cc--cHHHHHHHHHHHHHHCCCeeeeeeeee
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEE--------GVIIGDYGEFT-GM--KRFDARTRVTEVLTEKGLYRGTVSHAM 70 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~--------G~~~~~~~~f~-G~--~~~~ar~~Iie~L~~~g~l~~~~~~~~ 70 (164)
|..+..||..-..-|++.|+++..+.+.. ..+.-..+.|. -. ...+.-.++++.|.++|++...+ .
T Consensus 43 ~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~~~~tt~~~~~~~v~~i~~~L~ekG~iY~~~---~ 119 (319)
T cd00814 43 VTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKKLYENGYIYEGE---Y 119 (319)
T ss_pred cCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEeee---e
Confidence 44566777777778888888776665531 11111112221 11 13445688999999999987544 2
Q ss_pred ecceecCCCCee-EEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc-CCCcccc-----cCCCccccc
Q psy953 71 VVPLCSRSKDVV-EPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NREKKDR-----IGESQPFRE 143 (164)
Q Consensus 71 ~~p~c~R~g~~i-~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~-~~DWcIS-----wG~~iP~~~ 143 (164)
...+|.+|++.+ +++.++|||++++++++.+++.++++...+.|+..++.+.+||++ ++||||| ||+|+|.++
T Consensus 120 ~~~yc~~~~~~l~e~~~~~~~ff~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~d~~isR~~~~WGipvp~~~ 199 (319)
T cd00814 120 EGLYCVSCERFLPEWREEEHYFFRLSKFQDRLLEWLEKNPDFIWPENARNEVLSWLKEGLKDLSITRDLFDWGIPVPLDP 199 (319)
T ss_pred eeeECCCCCcEeeEEEeeeeEEEEhHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHhCCCcccCCCccCcccCeeCCCCC
Confidence 368999999876 789999999999999999999998655557899999999999998 9999999 999999875
Q ss_pred C
Q psy953 144 R 144 (164)
Q Consensus 144 ~ 144 (164)
+
T Consensus 200 ~ 200 (319)
T cd00814 200 G 200 (319)
T ss_pred C
Confidence 4
No 35
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.45 E-value=3.7e-13 Score=120.59 Aligned_cols=140 Identities=10% Similarity=0.068 Sum_probs=103.9
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc--------eEecCCCCCCCc---cHHHHHHHHHHHHHHCCCeeeeeeee-
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG--------VIIGDYGEFTGM---KRFDARTRVTEVLTEKGLYRGTVSHA- 69 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G--------~~~~~~~~f~G~---~~~~ar~~Iie~L~~~g~l~~~~~~~- 69 (164)
|..+..||..-...|++.|+++..+.++.. .+.-..+.|..- ...++...+++.|.++|.+...+.-.
T Consensus 45 ~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~i~~d~f~rtt~~~h~~~v~~~~~~L~~~G~iy~~~~~~~ 124 (673)
T PRK00133 45 VCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDFAGFGISFDNYGSTHSEENRELAQEIYLKLKENGYIYEKTIEQL 124 (673)
T ss_pred eCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCCccCCcHHHHHHHHHHHHHHHHCCCEEEeeeEEE
Confidence 345566777777888888887776665411 010012223211 25577888999999999988654310
Q ss_pred ------------------------------------------eecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhC
Q psy953 70 ------------------------------------------MVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKT 107 (164)
Q Consensus 70 ------------------------------------------~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~ 107 (164)
+..|+|.+||.+++++.++|||++++++++.+++.+++
T Consensus 125 y~~~~~~~l~~~~v~g~cp~C~~~d~~g~~ce~cg~~~~~~~l~~~~~~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~ 204 (673)
T PRK00133 125 YDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFKLPRFEEFLKEWITR 204 (673)
T ss_pred EeCCCCCCccchheecccCCCCCcccCCchhhhccccCChHhhcCCccccCCCcceEEecceEEEEHHHHHHHHHHHHhc
Confidence 11367889999999999999999999999999999964
Q ss_pred CCcEEeCccchHHHHHHHhc-CCCcccc----c-CCCccccc
Q psy953 108 GELKIIPDHHTKTWYQWLEN-NREKKDR----I-GESQPFRE 143 (164)
Q Consensus 108 ~~i~~~P~~~k~~~~~wl~~-~~DWcIS----w-G~~iP~~~ 143 (164)
...| |+.+++.+.+||++ ++||||| | |+|+|.++
T Consensus 205 -~~~~-~~~~~~~~~~~l~~~l~d~~ISR~~~W~GipvP~~~ 244 (673)
T PRK00133 205 -SGEL-QPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAP 244 (673)
T ss_pred -CCCC-CHHHHHHHHHHHhCCCcccceeeeCCccceECCCCC
Confidence 4555 99999999999975 8999999 9 99999543
No 36
>PF13603 tRNA-synt_1_2: Leucyl-tRNA synthetase, Domain 2; PDB: 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 2BTE_A 2V0G_A 2BYT_A ....
Probab=99.44 E-value=9.5e-14 Score=106.08 Aligned_cols=56 Identities=38% Similarity=0.719 Sum_probs=41.7
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCC----------------CceEecCCCCCCCccHHHHHHHHHHHHH
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNE----------------EGVIIGDYGEFTGMKRFDARTRVTEVLT 57 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~----------------~G~~~~~~~~f~G~~~~~ar~~Iie~L~ 57 (164)
|||++||||++||+||++||||++.||.. +|.|. ++++|+||+..+|+++|++.|+
T Consensus 114 AVmgvPahD~rD~~FAk~~~lpi~~Vi~~~~~~~~~~~~~~~~~~~G~l~-nS~~f~Gl~~~eA~~~I~~~Le 185 (185)
T PF13603_consen 114 AVMGVPAHDERDFEFAKKYNLPIKQVIKPKDDNEEIDNKQEAYTGDGILI-NSGEFNGLSSKEAREKIIKKLE 185 (185)
T ss_dssp EEEE-CCC-HHHHHHHHHHT------EEBSSSS---STTSS---S--EE--SSGGGTTSBHHHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHHHcCCCeeEEEcCCCCcccccccccCcCCCEEEE-eCCCCCCCCHHHHHHHHHHHhC
Confidence 69999999999999999999999988863 48887 6899999999999999999985
No 37
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.8e-13 Score=115.56 Aligned_cols=146 Identities=12% Similarity=0.116 Sum_probs=116.3
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCce--------EecCCCCC---CCccHHHHHHHHHHHHHHCCCeeeeeee--
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGV--------IIGDYGEF---TGMKRFDARTRVTEVLTEKGLYRGTVSH-- 68 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~--------~~~~~~~f---~G~~~~~ar~~Iie~L~~~g~l~~~~~~-- 68 (164)
|-.+..||..--.-|.+.|+++..++|+.-. +.-..+.| ..-...+..+.+...|.++|.+...+.-
T Consensus 48 vtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~~l~IsfD~F~rTt~~~h~~~vq~~f~~L~~~G~I~~~~~~~~ 127 (558)
T COG0143 48 LTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFKALNISFDNFIRTTSPEHKELVQEFFLKLYENGDIYLREYEGL 127 (558)
T ss_pred EeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccccccCCCHHHHHHHHHHHHHHHHCCCEeccceeee
Confidence 4567899999999999999999988885221 11112223 2334567889999999999998755431
Q ss_pred -----------------------------------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhC
Q psy953 69 -----------------------------------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKT 107 (164)
Q Consensus 69 -----------------------------------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~ 107 (164)
.+..|+|+.||..++.+.+++||++++++++.+++.+++
T Consensus 128 Yc~~~e~fl~dr~v~g~cp~cg~~~arGD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf~L~~~~~~L~~~~~~ 207 (558)
T COG0143 128 YCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFFRLSKFQDKLLEWYES 207 (558)
T ss_pred EcccccccccchheeccCCCcCccccCcchhhhccCcCCchhcCCCeeEeeCCCcccccceeEEEEHHHhHHHHHHHHHh
Confidence 113688899999899999999999999999999999986
Q ss_pred CCcEEeCccchHHHHHHHhc-CCCcccc-----cCCCcccccCccc
Q psy953 108 GELKIIPDHHTKTWYQWLEN-NREKKDR-----IGESQPFRERTLS 147 (164)
Q Consensus 108 ~~i~~~P~~~k~~~~~wl~~-~~DWcIS-----wG~~iP~~~~~~~ 147 (164)
+.-...|++.++.+.+||++ ++||||| ||+|+|.+++++.
T Consensus 208 ~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~ 253 (558)
T COG0143 208 NPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVI 253 (558)
T ss_pred CccccCChHHHHHHHHHHHccCcccceecCCCCCCccCCCCCCCEE
Confidence 55456799999999999988 9999999 9999998887664
No 38
>PLN02610 probable methionyl-tRNA synthetase
Probab=99.26 E-value=2.4e-11 Score=110.59 Aligned_cols=149 Identities=10% Similarity=0.123 Sum_probs=106.5
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCCCc-eEe-------cCCCCCC---CccHHHHHHHHHHHHHHCCCeeeeeee---
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNEEG-VII-------GDYGEFT---GMKRFDARTRVTEVLTEKGLYRGTVSH--- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~~G-~~~-------~~~~~f~---G~~~~~ar~~Iie~L~~~g~l~~~~~~--- 68 (164)
-.+..||..--.-|.+.|+.+...+|... .+. -..+.|. .-...++.+.++..|.++|++.+.+.-
T Consensus 62 ~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~~~l~i~~D~f~rT~~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~y 141 (801)
T PLN02610 62 CGTDEYGTATETKALEENCTPKEICDKYHAIHKEVYDWFDISFDKFGRTSTPQQTEICQAIFKKLMENNWLSENTMQQLY 141 (801)
T ss_pred ccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccccCccCCCHHHHHHHHHHHHHHHHCCCEEEeeEEEee
Confidence 35667888888888888888877777411 111 1122231 123457889999999999998865531
Q ss_pred ------------------------------------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHh
Q psy953 69 ------------------------------------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVK 106 (164)
Q Consensus 69 ------------------------------------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~ 106 (164)
.+..|+|.+||.+++.+.++|||++++++++++++.++
T Consensus 142 c~~~e~fl~d~~v~G~CP~~~C~~~~a~Gd~Ce~Cg~~~~p~eLi~p~c~~~g~~~~~~~~~~~ff~Ls~~~~~L~~~~~ 221 (801)
T PLN02610 142 CDTCQKFLADRLVEGTCPTEGCNYDSARGDQCEKCGKLLNPTELIDPKCKVCKNTPRIRDTDHLFLELPLLKDKLVEYIN 221 (801)
T ss_pred cCCCCCCcchHHhcCcCCccccCccccccchhhhccccCChhhhcCCcccCCCCcceEEEcceEEEEhHHHHHHHHHHHH
Confidence 01246677789999999999999999999999999997
Q ss_pred CCCcEEeCccchH---HHHHHHhc-CCCcccc----cCCCcccccCcccccCCCeeeeec
Q psy953 107 TGELKIIPDHHTK---TWYQWLEN-NREKKDR----IGESQPFRERTLSVEDPRTLWSPY 158 (164)
Q Consensus 107 ~~~i~~~P~~~k~---~~~~wl~~-~~DWcIS----wG~~iP~~~~~~~~~~~~~~~~~~ 158 (164)
++. ..|++.++ .+.+||+. ++||||| ||+|+|++. .+.+++||=+
T Consensus 222 ~~~--~~~~~~~n~~~~~~~~l~~gL~d~~IsR~~~WGipvP~~~-----~~~~v~YVWf 274 (801)
T PLN02610 222 ETS--VAGGWSQNAIQTTNAWLRDGLKPRCITRDLKWGVPVPLEK-----YKDKVFYVWF 274 (801)
T ss_pred hCC--CCCCcCHHHHHHHHHHHhCCCCCcceeeecCCcccCCCCC-----CCCcEEEEeh
Confidence 433 34655444 45589975 9999999 999999872 1456677733
No 39
>PLN02224 methionine-tRNA ligase
Probab=99.25 E-value=2.6e-11 Score=107.52 Aligned_cols=147 Identities=10% Similarity=0.029 Sum_probs=105.4
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCCC--------ceEecCCCCC---CCccHHHHHHHHHHHHHHCCCeeeeeee---
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNEE--------GVIIGDYGEF---TGMKRFDARTRVTEVLTEKGLYRGTVSH--- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~~--------G~~~~~~~~f---~G~~~~~ar~~Iie~L~~~g~l~~~~~~--- 68 (164)
..+..||..-..-|.+.|.++..+.++. ..+.-..+.| ..-...++.+.+...|.++|.+...+.-
T Consensus 113 ~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D~f~rTt~~~h~~~vq~~f~~L~~~G~Iy~~~~~~~y 192 (616)
T PLN02224 113 TGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWKDLDIAYDKFIRTTDPKHEAIVKEFYARVFANGDIYRADYEGLY 192 (616)
T ss_pred cCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHHHcCCCCCcCeeCCCHHHHHHHHHHHHHHHHCCCEEEeeeeeee
Confidence 4456677666677777777765555421 0011012222 1123557889999999999999865432
Q ss_pred -----------ee-ecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc-CCCcccc-
Q psy953 69 -----------AM-VVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NREKKDR- 134 (164)
Q Consensus 69 -----------~~-~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~-~~DWcIS- 134 (164)
.. .-+.|..||.+++.+.+++||++++++++.+.+.+++..-.+.|+..++.+.+||++ ++|||||
T Consensus 193 c~~ce~f~~~~~l~~~~~~~~~~~~~~~~~e~~~ff~Ls~~~~~L~~~~~~~~~~~~p~~~~~~~~~~l~~gL~d~~ISR 272 (616)
T PLN02224 193 CVNCEEYKDEKELLENNCCPVHQMPCVARKEDNYFFALSKYQKPLEDILAQNPRFVQPSYRLNEVQSWIKSGLRDFSISR 272 (616)
T ss_pred cCCCCCCCCHHHHcCCCCCCCCCCcceEEecceEEEEhHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhcCCCCccccC
Confidence 01 125688889999999999999999999999999997433334698899999999997 9999999
Q ss_pred ----cCCCcccccCcccccCCCeeee
Q psy953 135 ----IGESQPFRERTLSVEDPRTLWS 156 (164)
Q Consensus 135 ----wG~~iP~~~~~~~~~~~~~~~~ 156 (164)
||+|+|.++ ++++||
T Consensus 273 ~~~~WGIpvP~~~-------~~viYV 291 (616)
T PLN02224 273 ALVDWGIPVPDDD-------KQTIYV 291 (616)
T ss_pred CCCCCceECCCCC-------CcEEEE
Confidence 999999875 456666
No 40
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.20 E-value=4.2e-11 Score=98.24 Aligned_cols=80 Identities=25% Similarity=0.370 Sum_probs=68.8
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHH
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQ 123 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~ 123 (164)
...+....+++.|.++|++...+.- . +.++|||++++++++++++.++ +..+.|+..++++.+
T Consensus 111 ~~~~~v~~~f~~L~~~G~iY~~~~~-----v----------~~~~~~f~~~~~l~~~~~~~~~--~~~~~p~~~~~~~~~ 173 (312)
T cd00668 111 EYSKAVELIFSRLYEKGLIYRGTHP-----V----------RITEQWFFDMPKFKEKLLKALR--RGKIVPEHVKNRMEA 173 (312)
T ss_pred HHHHHHHHHHHHHHHCCCEEeecce-----e----------EeeeeEEEEcHHHHHHHHHHHh--cCCcCChHHHHHHHH
Confidence 3456778899999999998865321 1 6789999999999999999998 455899999999999
Q ss_pred HHhcCCCcccc----cCCCcc
Q psy953 124 WLENNREKKDR----IGESQP 140 (164)
Q Consensus 124 wl~~~~DWcIS----wG~~iP 140 (164)
||++..||||| ||+|+|
T Consensus 174 ~l~~~~d~~isR~~~WG~~~P 194 (312)
T cd00668 174 WLESLLDWAISRQRYWGTPLP 194 (312)
T ss_pred HHhCCCCeEEeccCCCCCcCC
Confidence 99998899999 999999
No 41
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=1e-10 Score=105.90 Aligned_cols=123 Identities=23% Similarity=0.267 Sum_probs=97.1
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHA 69 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~ 69 (164)
|||.+|||+++||++|++|+||+..+|.. +|.+. +++.|+|+...+|...+...
T Consensus 340 avm~vpahd~rd~efA~~y~l~i~~vi~~~~~~~~~~~~~~g~li-nS~~~~gl~~e~a~~~~~~~-------------- 404 (814)
T COG0495 340 AVMGVPAHDERDLEFATKYKLPIKKVIMPEGTVGKKVYEGEGVLI-NSGGLDGLDYEEAKVKIRCG-------------- 404 (814)
T ss_pred ceecCCCCCchhhHHHHhcCCCeEEEEecCCCcccceeccCceEe-ccccccCcchhHHHHHHHHh--------------
Confidence 69999999999999999999999998864 45655 45678888777665444443
Q ss_pred eecceecCCCCeeEEcccCeeeeecc--HH-HHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCC--Ccc
Q psy953 70 MVVPLCSRSKDVVEPLLKPQWYVRTG--EM-AEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGE--SQP 140 (164)
Q Consensus 70 ~~~p~c~R~g~~i~~~~~~QWFi~~~--~~-~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~--~iP 140 (164)
++.....|||++++ +| +.+...+.. .|.++|...++.+..=+++++.|... .|+ |||
T Consensus 405 ------------l~~~~~~q~~v~Y~lrdW~~srqRywg~--pipii~~e~~~~~~~~~d~Lpv~lp~~~~~~gt~~pL~ 470 (814)
T COG0495 405 ------------LVKRGLGQWFVNYRLRDWLKSRQRYWGE--PIPIIHCEDCGVVPVPEDWLPVKLPERVRGLGTGSPLP 470 (814)
T ss_pred ------------HHHhcCCceEEecccchHHHHHHHHhCC--CcceeEcccCCcccCchHhcCcccccccccCCCCCCCC
Confidence 33445678888887 46 778788876 79999998888888888888988444 799 999
Q ss_pred cccCcccccCCC
Q psy953 141 FRERTLSVEDPR 152 (164)
Q Consensus 141 ~~~~~~~~~~~~ 152 (164)
+++.|+.+.-|.
T Consensus 471 ~~~~W~~~s~~~ 482 (814)
T COG0495 471 WDEEWVIESLPD 482 (814)
T ss_pred CCcceEEEecCC
Confidence 999999887654
No 42
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=99.15 E-value=2.7e-11 Score=102.48 Aligned_cols=144 Identities=11% Similarity=0.142 Sum_probs=96.6
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc-eEe-------cCCCCC---CCccHHHHHHHHHHHHHHCCCeeeeeeee-
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG-VII-------GDYGEF---TGMKRFDARTRVTEVLTEKGLYRGTVSHA- 69 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G-~~~-------~~~~~f---~G~~~~~ar~~Iie~L~~~g~l~~~~~~~- 69 (164)
+-.+..||..--.-|.+.|+++..++++.. .+. -..+.| ..-...++.+.+.+.|.++|.+.+.+.-.
T Consensus 42 ~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~F~rTt~~~h~~~v~~i~~~L~~~G~I~~~~~~~~ 121 (391)
T PF09334_consen 42 VTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDRFIRTTDDRHKEFVQEIFKRLYDNGYIYKREYEGW 121 (391)
T ss_dssp EEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SEEEETTSHHHHHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred EEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcceeCCCCHHHHHHHHHHHHHHHhcCceeeccccee
Confidence 456778999999999999999887776410 000 011112 12345678899999999999988765420
Q ss_pred ---------------eecc----------eecCCCCeeE-----------------EcccCeeeeeccHHHHHHHHHHhC
Q psy953 70 ---------------MVVP----------LCSRSKDVVE-----------------PLLKPQWYVRTGEMAEKAVQAVKT 107 (164)
Q Consensus 70 ---------------~~~p----------~c~R~g~~i~-----------------~~~~~QWFi~~~~~~~~~l~~i~~ 107 (164)
-..| .|+.||.+++ .+..+|||++++++++.+.+.+++
T Consensus 122 Yc~~~e~fl~e~~v~g~CP~C~~~~a~g~~Ce~cG~~~~~~~l~~p~~~~~g~~~~~r~e~~~ff~L~~~~~~L~~~l~~ 201 (391)
T PF09334_consen 122 YCPSCERFLPESFVEGTCPYCGSDKARGDQCENCGRPLEPEELINPVCKICGSPPEVREEENYFFKLSKFRDQLREWLES 201 (391)
T ss_dssp EETTTTEEE-GGGETCEETTT--SSCTTTEETTTSSBEECCCSECEEETTTS-B-EEEEEEEEEE-GGGGHHHHHHHHHH
T ss_pred EecCcCcccccceeeccccCcCccccCCCcccCCCCCcccccccCCccccccccCccccceEEEEehHHhHHHHHHHHhc
Confidence 1112 3445666554 677899999999999999999975
Q ss_pred CCcEEeCccchHHHHHHHhc-CCCcccc----cCCCcccccCcc
Q psy953 108 GELKIIPDHHTKTWYQWLEN-NREKKDR----IGESQPFRERTL 146 (164)
Q Consensus 108 ~~i~~~P~~~k~~~~~wl~~-~~DWcIS----wG~~iP~~~~~~ 146 (164)
.. .+.|...++...+||++ ++||||| ||+|+|.+++++
T Consensus 202 ~~-~~~~~~~~~~~~~~l~~~L~d~~Is~~~~WGI~vP~~~~~~ 244 (391)
T PF09334_consen 202 NP-DFPPPRVREIVRNWLKEGLPDLSISRPLDWGIPVPGDPGQV 244 (391)
T ss_dssp ST-TSSHHHHHHHHHHHHHT----EE-ECTTSSSEEETTEEEEE
T ss_pred CC-CCCChhHHHHHHHHhhcccCceeeecCCCCcceeeccCCce
Confidence 32 23677788888999999 8999999 999999776543
No 43
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=98.83 E-value=1.1e-08 Score=84.30 Aligned_cols=118 Identities=20% Similarity=0.245 Sum_probs=82.8
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCC-CCC--CccHHHHHHHHHHHHHHCCCeeeeeee
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYG-EFT--GMKRFDARTRVTEVLTEKGLYRGTVSH 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~-~f~--G~~~~~ar~~Iie~L~~~g~l~~~~~~ 68 (164)
..+..||..-...|++.|.++....++ =|.-. +.. .+. --...++.+.+++.|.++|.+...+.
T Consensus 44 ~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~-d~~~~~~t~~~~~~~~v~~~f~~L~~~G~iy~~~~- 121 (314)
T cd00812 44 MGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSY-DWRREFTTCDPEYYKFTQWLFLKLYEKGLAYKKEA- 121 (314)
T ss_pred CCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccce-ecccccccCCHHHHHHHHHHHHHHHHCCCEEecCc-
Confidence 345566666666677777665544442 12111 110 111 11234667778899999999986542
Q ss_pred eeecceecCCCCeeEEcccCeeeeec--cHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCccc
Q psy953 69 AMVVPLCSRSKDVVEPLLKPQWYVRT--GEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPF 141 (164)
Q Consensus 69 ~~~~p~c~R~g~~i~~~~~~QWFi~~--~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~ 141 (164)
.+.+| +.++|||+++ +++++++++.++ +..+.|+..++.+.+||+ || ||+|+|+
T Consensus 122 --~v~~~---------~~~~~~f~~l~~~~~~~~l~~~l~--~~~~~p~~~~~~~~~~l~------isR~~~wGipvP~ 181 (314)
T cd00812 122 --PVNWC---------KLLDQWFLKYSETEWKEKLLKDLE--KLDGWPEEVRAMQENWIG------CSRQRYWGTPIPW 181 (314)
T ss_pred --eeeee---------CccceEEEEcCcHHHHHHHHHHHH--hcCcCCHHHHHHHHHHhe------eeeecCCcCCcCc
Confidence 35666 7799999999 899999999998 456789999999999997 66 9999997
No 44
>KOG0435|consensus
Probab=98.45 E-value=1.1e-07 Score=83.89 Aligned_cols=150 Identities=23% Similarity=0.289 Sum_probs=101.5
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccce----eCCCceEecCCCCCCC-ccHHHHHHHHHHHHHHCCCeeeeeeeeee----
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITV----FNEEGVIIGDYGEFTG-MKRFDARTRVTEVLTEKGLYRGTVSHAMV---- 71 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~----id~~G~~~~~~~~f~G-~~~~~ar~~Iie~L~~~g~l~~~~~~~~~---- 71 (164)
+||.+|+|+.+|+++|.+-++..+.+ ++..|+.+ ....|.| +.++.|+.+|++.+++.|++.....|+++
T Consensus 346 a~m~~P~hd~rD~ela~~~~~~~~~~~~~~f~~~~K~~-~~~~~tn~~~~q~a~~~l~~~~~~~g~g~~~vs~kLkDWLi 424 (876)
T KOG0435|consen 346 AVMGAPGHDQRDKELAQKIGIKWIICIEVIFTNFGKKN-EQKAFTNLDIRQNAALKLFQFAERKGVGGYVVSYKLKDWLI 424 (876)
T ss_pred eeeeccCcccchhHHHhcccceeEEEEeeeecchhhhh-ccccccchhHHHHHHHHHHHHHHhcCCCcceecchhhhhhh
Confidence 68999999999999999966654433 45667655 3467788 55678999999999999999888877543
Q ss_pred -----------cceecCCCCeeEEcccCeeeeeccHH---------HHHHHHHHhCCCcEEeCccch------HHHHHHH
Q psy953 72 -----------VPLCSRSKDVVEPLLKPQWYVRTGEM---------AEKAVQAVKTGELKIIPDHHT------KTWYQWL 125 (164)
Q Consensus 72 -----------~p~c~R~g~~i~~~~~~QWFi~~~~~---------~~~~l~~i~~~~i~~~P~~~k------~~~~~wl 125 (164)
+.||..||.+.+| ..+--+.+.++ ...+-+.++ + -.|.... .++..|+
T Consensus 425 SRQRyWGTPIPivhc~~cG~vpVp--es~LPV~LP~l~~~~~kG~Pls~~~e~vn---~-~cP~cg~pAkRETDTMDTFv 498 (876)
T KOG0435|consen 425 SRQRYWGTPIPIVHCDDCGAVPVP--ESELPVTLPELNDFTPKGPPLSKADEWVN---V-DCPRCGEPAKRETDTMDTFV 498 (876)
T ss_pred hhhhccCCCcceEEcCCCCcccCc--HHHCCcccccccccCCCCCcccchhhhee---c-cCccCCCcccccccccchhh
Confidence 6789999965544 22333333311 112233332 1 1344332 3566666
Q ss_pred hcCC---CcccccCCCcccccCcccccCCCeeeee
Q psy953 126 ENNR---EKKDRIGESQPFRERTLSVEDPRTLWSP 157 (164)
Q Consensus 126 ~~~~---DWcISwG~~iP~~~~~~~~~~~~~~~~~ 157 (164)
++.- ..-.+.+...||+....+.-||+|+|+-
T Consensus 499 DSsWYYlRylDpkN~e~~~d~a~a~k~MPVDvYIG 533 (876)
T KOG0435|consen 499 DSSWYYLRYLDPKNPEEPFDKAKAKKNMPVDVYIG 533 (876)
T ss_pred ccceeeEeecCCCCcccccchhhhhccCceeEEec
Confidence 6532 1122388999999999999999999983
No 45
>PLN02563 aminoacyl-tRNA ligase
Probab=98.22 E-value=3.1e-06 Score=78.90 Aligned_cols=84 Identities=15% Similarity=0.256 Sum_probs=71.2
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeee--------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCC
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSH--------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGE 109 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~--------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~ 109 (164)
...++.+.++..|.++|++++.+.. +..++.|+|||.+++.+...|||++++++++++++.++ .
T Consensus 209 ~y~~~~q~~F~~L~~~GliY~~~~~v~wcp~~~T~La~~Ev~~~~~~~~~~~~~~~~~~q~f~~it~ya~~L~~~l~--~ 286 (963)
T PLN02563 209 EYYKWTQWIFLQLLKRGLAYQAEVPVNWCPALGTVLANEEVVDGLSERGGHPVIRKPMRQWMLKITAYADRLLEDLD--D 286 (963)
T ss_pred HHHHHHHHHHHHHHHCCCEEeeeeeeeecCCcCCCCCHHHhhcCCCcCCCCceEEEecceeEEecchhHHHHHHhhh--h
Confidence 3457889999999999999976653 12256799999999999999999999999999999997 4
Q ss_pred cEEeCccchHHHHHHHhcCCC
Q psy953 110 LKIIPDHHTKTWYQWLENNRE 130 (164)
Q Consensus 110 i~~~P~~~k~~~~~wl~~~~D 130 (164)
+. .|+..+++..+||....-
T Consensus 287 ~~-wp~~v~~~q~nwiG~s~g 306 (963)
T PLN02563 287 LD-WPESIKEMQRNWIGRSEG 306 (963)
T ss_pred cC-CCHHHHHHHHHhccccce
Confidence 66 599999999999977543
No 46
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=2.6e-06 Score=77.67 Aligned_cols=83 Identities=18% Similarity=0.271 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeee--------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCc
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSH--------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGEL 110 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~--------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i 110 (164)
...-.+.+...|.++|++.+.+.. ......|||||.+++++-..|||++++++++++|+.++ .+
T Consensus 133 Yyk~~QW~F~kL~ekGL~y~~~~~VnwcP~d~tvlaneqv~~g~~~r~~~~V~~kel~qw~~kit~yae~ll~~l~--~l 210 (814)
T COG0495 133 YYKWIQWQFLKLYEKGLAYRKEAPVNWCPVDGTVLANEQVIDGGCWRCGEPVEIKELTQWFFKITDYADELLDDLD--KL 210 (814)
T ss_pred HHHHHHHHHHHHHHCCCEEeccccceeCCCcCCccccceeecCCcccCCCceeEeeeEEEEEEechhHHHHHhhhh--hh
Confidence 456778999999999999876653 22357899999999999999999999999999999987 56
Q ss_pred E-EeCccchHHHHHHHhcCC
Q psy953 111 K-IIPDHHTKTWYQWLENNR 129 (164)
Q Consensus 111 ~-~~P~~~k~~~~~wl~~~~ 129 (164)
. ..|+..+.+..+||....
T Consensus 211 ~~~wPE~Vk~mq~nWIg~s~ 230 (814)
T COG0495 211 ATLWPETVKGMQRNWIGPSE 230 (814)
T ss_pred ccCCchhHHHHHHcCcCCCC
Confidence 6 569999999999997754
No 47
>KOG0436|consensus
Probab=98.19 E-value=1.5e-05 Score=67.59 Aligned_cols=147 Identities=11% Similarity=0.050 Sum_probs=99.5
Q ss_pred eCCCCCHHHHHHHHHcCCCccceeCCCc-eEec-------CCCCCC---CccHHHHHHHHHHHHHHCCCeeeeeee----
Q psy953 4 ISPGHDHNDYEVAQRLNLPLITVFNEEG-VIIG-------DYGEFT---GMKRFDARTRVTEVLTEKGLYRGTVSH---- 68 (164)
Q Consensus 4 ~~PaH~~~D~~~~~~~~L~~~~~id~~G-~~~~-------~~~~f~---G~~~~~ar~~Iie~L~~~g~l~~~~~~---- 68 (164)
.+..||..--..|...|+.+....|.-- .|.. ....|- .=....+.++.-+.+.++|.+.....-
T Consensus 84 GTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~qL~k~~gi~yt~FIRTTdpkH~a~Vqefw~~~~knG~iy~g~~eGwYc 163 (578)
T KOG0436|consen 84 GTDEHGLKIQTAAATNGRNPPELCDRISQSFRQLWKDAGIAYTKFIRTTDPKHEAIVQEFWARVFKNGDIYRGDYEGWYC 163 (578)
T ss_pred CCCccchhhhhhHhhcCCChHHHHhhhhHHHHHHHHHhCcchhheeecCCchHHHHHHHHHHHHHhCCceeeecccceEe
Confidence 3566777777777777776655555310 0000 011221 112344566777888999988754321
Q ss_pred -----------eeecceec------CCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc-CCC
Q psy953 69 -----------AMVVPLCS------RSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NRE 130 (164)
Q Consensus 69 -----------~~~~p~c~------R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~-~~D 130 (164)
....|.|. -+|.++..+..+-+|++++.+++.+.+.++.+.--+.|+...+...+||+. ++|
T Consensus 164 vsdEtf~pEskv~k~p~~~gk~vsmEsg~~vv~~kE~NY~FrLSkfqk~l~d~lrkNP~fvqPs~~~~qVl~~lktglpD 243 (578)
T KOG0436|consen 164 VSDETFYPESKVLKNPCPPGKVVSMESGNPVVWRKEDNYFFRLSKFQKPLEDHLRKNPRFVQPSYFHNQVLSWLKTGLPD 243 (578)
T ss_pred ccccccCCHHHHhcCCCCCCceeeeccCCceeEecccceeeeHHhhhhHHHHHHhcCCCccCchHHHHHHHHHHHcCCCc
Confidence 12233333 578888888899999999999999999997534445688899999999998 899
Q ss_pred cccc-------cCCCcccccCcccccCCCeeeee
Q psy953 131 KKDR-------IGESQPFRERTLSVEDPRTLWSP 157 (164)
Q Consensus 131 WcIS-------wG~~iP~~~~~~~~~~~~~~~~~ 157 (164)
-.|| ||+|+|-|+. ||+||=
T Consensus 244 lSISRpsarl~WGIPvP~dds-------QtIYVW 270 (578)
T KOG0436|consen 244 LSISRPSARLDWGIPVPGDDS-------QTIYVW 270 (578)
T ss_pred ccccChhhhcccCCCCCCCCc-------ceEEEe
Confidence 9999 9999998864 566653
No 48
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=98.10 E-value=6.6e-06 Score=75.92 Aligned_cols=126 Identities=16% Similarity=0.100 Sum_probs=88.2
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCCCCCCc--cHHHHHHHHHHHHHHCCCeeeeeeee
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEFTGM--KRFDARTRVTEVLTEKGLYRGTVSHA 69 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~~f~G~--~~~~ar~~Iie~L~~~g~l~~~~~~~ 69 (164)
++...||.---..|.+.|++.....++ =|...+-...|.-+ ...++.+.++..|.++|++.+.+...
T Consensus 73 ~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~lG~~~Dw~~~~~T~d~~y~~~~~~~F~~L~~kGliy~~~~~v 152 (842)
T TIGR00396 73 MGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQALGFSYDWDREIATCDPEYYKWTQWIFLELFEKGLAYVKEADV 152 (842)
T ss_pred CCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcccCCCCcccCCHHHHHHHHHHHHHHHHCCCeEeeccce
Confidence 344556655555666667655444332 12211111123222 34567888999999999988665421
Q ss_pred ------------e---ecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCC
Q psy953 70 ------------M---VVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRE 130 (164)
Q Consensus 70 ------------~---~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~D 130 (164)
+ ...+|||||.+++.+..+|||++++++++++++.++ +....|++.+++..+||....-
T Consensus 153 ~wcp~~~t~La~~ev~~~g~~~~~g~~v~~~~~~~~f~~i~~~~~~l~~~l~--~~~~wp~~v~~~q~~wig~s~g 226 (842)
T TIGR00396 153 NWCPNDGTVLANEQVDSDGRSWRGGTPVEKKELKQWFLKITAYAEELLNDLE--ELDHWPESVKEMQRNWIGKSEG 226 (842)
T ss_pred EEeCCCCCCccHHHHhhcCccccCCCcceEeecceeEEehhhhHHHHHHHHh--hhccccHHHHHHHHhcccccce
Confidence 1 127999999999999999999999999999999998 5777899999999999977543
No 49
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.80 E-value=5.3e-05 Score=69.71 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeee--------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCC
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSH--------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGE 109 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~--------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~ 109 (164)
...++...++..|.++|++...+.. +...++|+|||.+++.+..+|||++++++++++++.++.
T Consensus 130 ~~~~~v~~~f~~L~~~Gliy~~~~~v~wcp~~~t~La~~ev~~~~~~~~~~~~~~~~~~~~f~~i~~~~~~L~~~l~~-- 207 (805)
T PRK00390 130 EYYKWTQWIFLKLYEKGLAYRKESPVNWCPVDGTVLANEQVIDGRCWRCGAPVEKKELRQWFLKITDYADELLDDLDK-- 207 (805)
T ss_pred HHHHHHHHHHHHHHHCCCEEEecCEEEecCCcCCCCCHHHhhCCeecccCCeeEEEecceeeEecchhHHHHHHHHHh--
Confidence 4457889999999999999876542 122578999999999999999999999999999999873
Q ss_pred cEEeCccchHHHHHHHhcCCCccc
Q psy953 110 LKIIPDHHTKTWYQWLENNREKKD 133 (164)
Q Consensus 110 i~~~P~~~k~~~~~wl~~~~DWcI 133 (164)
+.=.|+..+....+||....-+.|
T Consensus 208 ~~~w~~~v~~~~~~wig~~~~~~i 231 (805)
T PRK00390 208 LEDWPEKVKTMQRNWIGRSEGAEV 231 (805)
T ss_pred hccCcHHHHHHHHhhccccceEEE
Confidence 432499999999999976554444
No 50
>KOG0435|consensus
Probab=97.74 E-value=1.2e-05 Score=71.34 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeee---------------eecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCC
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHA---------------MVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTG 108 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~---------------~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~ 108 (164)
+...-.+.|.=.|-++|+++..|-.. -....+||||+++|.....||||+++++++++++.++
T Consensus 155 dYYKWTQwiFlkLfe~GLAYq~Ea~VNWDPvD~TVLAnEQVD~~G~SWRSGA~VEkK~LrQWfikttaYAk~L~d~L~-- 232 (876)
T KOG0435|consen 155 DYYKWTQWIFLKLFEKGLAYQAEAEVNWDPVDKTVLANEQVDADGCSWRSGAKVEKKKLRQWFIKTTAYAKRLLDGLE-- 232 (876)
T ss_pred chhHHHHHHHHHHHHhhhhhccccccccCcccceeecchhhcccCccccccchhhHHHHHHHHhhhhHHHHHHHHHHH--
Confidence 34567788999999999988665421 1357899999999999999999999999999999998
Q ss_pred Cc-EEeCccchHHHHHHHhc
Q psy953 109 EL-KIIPDHHTKTWYQWLEN 127 (164)
Q Consensus 109 ~i-~~~P~~~k~~~~~wl~~ 127 (164)
.+ +| |+ .+++..+||..
T Consensus 233 ~L~~W-~~-vk~mQrnWIG~ 250 (876)
T KOG0435|consen 233 TLPEW-PE-VKDMQRNWIGR 250 (876)
T ss_pred hhhhh-hh-HHHHHHhhccc
Confidence 46 44 66 89999999976
No 51
>KOG1247|consensus
Probab=97.35 E-value=0.00024 Score=60.31 Aligned_cols=86 Identities=8% Similarity=0.141 Sum_probs=66.0
Q ss_pred HHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCC--cEEeCccchHHHHHHHhc-CCCc
Q psy953 55 VLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGE--LKIIPDHHTKTWYQWLEN-NREK 131 (164)
Q Consensus 55 ~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~--i~~~P~~~k~~~~~wl~~-~~DW 131 (164)
.+.+.|.++.. ..+..|.|.-|..-.+++.+.+.|+++++++.++-+.++... -.| ..++++...+||.. +...
T Consensus 167 qcd~cG~l~N~--~el~~pkc~ic~~~p~~~~t~h~Fl~L~kl~~~lee~~~~~~~~~~W-S~Na~~it~sWlk~gl~pR 243 (567)
T KOG1247|consen 167 QCDKCGKLVNA--AELKIPKCKICQAGPVVRQTQHLFLSLDKLEPRLEEWLRRTLVEGDW-SQNAQNITRSWLKDGLKPR 243 (567)
T ss_pred hhhhhhhhcCH--HHhcCcchheeccCCeeeeeeEEEEEhHHhHHHHHHHHHhccccCCC-ccchHHHHHHHHHcccccc
Confidence 34444544432 345689999999988999999999999999999888886321 123 44678889999988 8899
Q ss_pred ccc----cCCCccccc
Q psy953 132 KDR----IGESQPFRE 143 (164)
Q Consensus 132 cIS----wG~~iP~~~ 143 (164)
||+ ||||+|.+.
T Consensus 244 CiTRDLkWGtpVPle~ 259 (567)
T KOG1247|consen 244 CITRDLKWGTPVPLEK 259 (567)
T ss_pred ccccccccCCCcChhh
Confidence 999 999999653
No 52
>PF04918 DltD_M: DltD central region; InterPro: IPR007002 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the central region of DltD.; PDB: 3BMA_C.
Probab=68.63 E-value=1.8 Score=32.28 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=9.2
Q ss_pred CCCeeEEcccCeeeeecc
Q psy953 78 SKDVVEPLLKPQWYVRTG 95 (164)
Q Consensus 78 ~g~~i~~~~~~QWFi~~~ 95 (164)
.+..++++++||||.+-+
T Consensus 23 k~KK~V~iiSPQWF~k~G 40 (163)
T PF04918_consen 23 KNKKAVFIISPQWFTKKG 40 (163)
T ss_dssp TT-EEEEE--GGG--TT-
T ss_pred cCCcEEEEECCcccCCCC
Confidence 356788899999998643
No 53
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=68.05 E-value=7.3 Score=23.12 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=27.5
Q ss_pred ceeCCCceEecCCCCCCCccHHHHHHHHHHHH
Q psy953 25 TVFNEEGVIIGDYGEFTGMKRFDARTRVTEVL 56 (164)
Q Consensus 25 ~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L 56 (164)
-.|..||++......|.|.+..++.+.+-+.|
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 35789999998888999999999988887766
No 54
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=49.86 E-value=15 Score=26.85 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=19.3
Q ss_pred HHHHHHHHHCCCeeeeeeeeeecceecCCCCeeE
Q psy953 50 TRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVE 83 (164)
Q Consensus 50 ~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~ 83 (164)
...|..+...|.|.-.. ......-|+|||++|-
T Consensus 60 ~~~I~~~IreGRL~~~~-~~nl~~~CE~CG~~I~ 92 (137)
T TIGR03826 60 EKLILKFIREGRLQLKH-FPNLGYPCERCGTSIR 92 (137)
T ss_pred HHHHHHHHHcCCeeccC-CCCCcCcccccCCcCC
Confidence 34455555566665443 2223567999998553
No 55
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=48.02 E-value=16 Score=33.16 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=42.1
Q ss_pred HHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccch
Q psy953 50 TRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT 118 (164)
Q Consensus 50 ~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k 118 (164)
.+|++.|++.|.- . . --..-|+.||=. +..+...++||-+++.+-+.+.+.-.++++-++.-++-
T Consensus 159 ~kLIe~L~~iGY~-~-~-nL~gAPYDWRls-~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMG 223 (642)
T PLN02517 159 AVLIANLARIGYE-E-K-NMYMAAYDWRLS-FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMG 223 (642)
T ss_pred HHHHHHHHHcCCC-C-C-ceeecccccccC-ccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCc
Confidence 7899999999885 3 2 223469999954 22223458999777766665544422347778776654
No 56
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=45.33 E-value=50 Score=30.55 Aligned_cols=67 Identities=21% Similarity=0.403 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHcCCCcc----------------ceeCCCc--eEecCC--CCCCCc-------cHHHHHHHHHHHHH
Q psy953 5 SPGHDHNDYEVAQRLNLPLI----------------TVFNEEG--VIIGDY--GEFTGM-------KRFDARTRVTEVLT 57 (164)
Q Consensus 5 ~PaH~~~D~~~~~~~~L~~~----------------~~id~~G--~~~~~~--~~f~G~-------~~~~ar~~Iie~L~ 57 (164)
+|.+. .=.+.|++.|++|- ++|.-+| ++...+ +.-+|| .++++|+.|+|.|-
T Consensus 13 v~~g~-tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk~~R~~vmE~LL 91 (693)
T COG1034 13 VPEGE-TVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVKKAREGVMEFLL 91 (693)
T ss_pred cCCCc-HHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHHHHHHHHHHHHH
Confidence 34444 77889999998662 2333344 444322 356777 45689999999984
Q ss_pred HCCCeeeeeeeeeecceecCCCC
Q psy953 58 EKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 58 ~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
.+|+|.-|+|++.|.
T Consensus 92 --------iNHPlDCpiCD~gGe 106 (693)
T COG1034 92 --------INHPLDCPVCDKGGE 106 (693)
T ss_pred --------hcCCCCCCccCCCCC
Confidence 347777899999995
No 57
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.28 E-value=9.2 Score=29.32 Aligned_cols=63 Identities=14% Similarity=0.139 Sum_probs=40.0
Q ss_pred CceEecCCC-CCCCccHHHHHHHHHHHHHHCC-CeeeeeeeeeecceecCCCCeeEEcccCeeeee
Q psy953 30 EGVIIGDYG-EFTGMKRFDARTRVTEVLTEKG-LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVR 93 (164)
Q Consensus 30 ~G~~~~~~~-~f~G~~~~~ar~~Iie~L~~~g-~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi~ 93 (164)
.|++..+.. ++.||+..||+..+.++|.+.- .....--+.|=... +.++.+|....++.|+-.
T Consensus 90 rG~~~~e~~LDLHG~tq~eAr~~L~~Fi~~a~~~~~rcv~VihGkG~-s~g~~~vLK~~Vp~WL~q 154 (184)
T COG2840 90 RGRYPPEARLDLHGLTQEEARQELGAFIARARAEGLRCVLVIHGKGR-SKGSKPVLKSQVPRWLTQ 154 (184)
T ss_pred cCCCCcceeeeccCCCHHHHHHHHHHHHHHHHHhCCcEEEEEeCCCc-CCCCchhHHHHHHHHHHh
Confidence 566643333 6789999999999999986643 12222223343444 444467777788899854
No 58
>PF10413 Rhodopsin_N: Amino terminal of the G-protein receptor rhodopsin; InterPro: IPR019477 Rhodopsin is the archetypal G-protein-coupled receptor. Such receptors participate in virtually all physiological processes as signalling molecules. They utilise heterotrimeric guanosine triphosphate (GTP)-binding proteins to transduce extracellular signals to intracellular events. Rhodopsin is important because of the pivotal role it plays in visual signal transduction. It is a dimeric transmembrane protein whose intradiskal surface consists of an N-terminal domain and three loops connecting six of the seven transmembrane helices. The N-terminal domain is a compact alpha-helical region with breaks and bends at proline residues outside the membrane []. This entry represents the N-terminal domain, while the transmembrane region is represented by (IPR000276 from INTERPRO). The N-terminal domain is extracellular is and is necessary for successful dimerisation and molecular stability []. ; PDB: 3PXO_A 4A4M_A 3OAX_A 2J4Y_A 2HPY_A 1F88_B 3PQR_A 1L9H_B 2I37_B 1GZM_B ....
Probab=44.38 E-value=13 Score=20.60 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=10.1
Q ss_pred CeeeeecCCCCC
Q psy953 152 RTLWSPYSNLSG 163 (164)
Q Consensus 152 ~~~~~~~~~~~~ 163 (164)
...|+|.||-+|
T Consensus 6 ~~FYiPmsN~TG 17 (36)
T PF10413_consen 6 PNFYIPMSNRTG 17 (36)
T ss_dssp SSEEESSTGTTS
T ss_pred CceeEeeccccc
Confidence 358999999887
No 59
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=40.66 E-value=40 Score=31.74 Aligned_cols=49 Identities=20% Similarity=0.123 Sum_probs=38.0
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee-----E--EcccCeeeeecc
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV-----E--PLLKPQWYVRTG 95 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i-----~--~~~~~QWFi~~~ 95 (164)
...++...++..|.++|++.+.+.. ++.|.+|++.+ + ....++|++++.
T Consensus 147 ~~~~~v~~~F~~L~~~GlIy~~~~~---v~wcp~~~t~lsd~Ev~~~~~~~~~~~i~f~ 202 (861)
T TIGR00422 147 GLSKAVKEAFVRLYEKGLIYRGEYL---VNWDPKLNTAISDIEVEYKEVKGKLYYIRYP 202 (861)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCcc---cccCCCCCCcchHhHhhcccccceEEEEEEE
Confidence 3467889999999999999876533 78999999976 1 245678888775
No 60
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=40.00 E-value=35 Score=22.04 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=22.8
Q ss_pred cceeCCCceEe-cCCC--CCCCccHHHHHHHHHHHHHH
Q psy953 24 ITVFNEEGVII-GDYG--EFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 24 ~~~id~~G~~~-~~~~--~f~G~~~~~ar~~Iie~L~~ 58 (164)
...|+.+|.+. ...| .-.|++..||++.|.+.|.+
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 45577888775 2233 34899999999999999976
No 61
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=38.75 E-value=20 Score=19.00 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=9.1
Q ss_pred cceecCCCCeeEEccc
Q psy953 72 VPLCSRSKDVVEPLLK 87 (164)
Q Consensus 72 ~p~c~R~g~~i~~~~~ 87 (164)
..+|.|||.+.++...
T Consensus 3 ~rfC~~CG~~t~~~~~ 18 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPG 18 (32)
T ss_dssp TSB-TTT--BEEE-SS
T ss_pred CcccCcCCccccCCCC
Confidence 3689999999887543
No 62
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=35.55 E-value=27 Score=26.26 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=38.2
Q ss_pred HHHHHHHcCC---------CccceeCCCceEecCC--CCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 12 DYEVAQRLNL---------PLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 12 D~~~~~~~~L---------~~~~~id~~G~~~~~~--~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|-.+++.||+ |..-+||++|++.... ....+.+ -+.+++.|++.....+.. .+.-|..||.|.
T Consensus 101 ~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~----~~~ll~~l~~~~~~~~~~--~~~~~~~~~~~~ 174 (187)
T TIGR03137 101 TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRD----ASELLRKIKAAQYVAAHP--GEVCPAKWKEGA 174 (187)
T ss_pred ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCC----HHHHHHHHHHhhhHHhcC--CeeeCCCCCcCC
Confidence 4567788875 4467889999886321 1222222 345556665544444331 133588899997
Q ss_pred eeE
Q psy953 81 VVE 83 (164)
Q Consensus 81 ~i~ 83 (164)
...
T Consensus 175 ~~~ 177 (187)
T TIGR03137 175 ETL 177 (187)
T ss_pred ccc
Confidence 543
No 63
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.35 E-value=94 Score=19.11 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEcccCeeee
Q psy953 47 DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYV 92 (164)
Q Consensus 47 ~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~~~~QWFi 92 (164)
+.++.+....++.|..+...+-..+--.|..||...........|.
T Consensus 3 ~~~~~L~yka~~~G~~v~~v~~~~TSq~C~~CG~~~~~~~~~r~~~ 48 (69)
T PF07282_consen 3 QFRQRLEYKAEEYGIQVVEVDEAYTSQTCPRCGHRNKKRRSGRVFT 48 (69)
T ss_pred HHHHHHHHHHHHhCCEEEEECCCCCccCccCcccccccccccceEE
Confidence 3456667777788876644332224568999998777756666664
No 64
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=34.35 E-value=78 Score=21.70 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=24.6
Q ss_pred HHHHHHHHHHCCCeeeeee------e------eeecceecCCCCeeEE
Q psy953 49 RTRVTEVLTEKGLYRGTVS------H------AMVVPLCSRSKDVVEP 84 (164)
Q Consensus 49 r~~Iie~L~~~g~l~~~~~------~------~~~~p~c~R~g~~i~~ 84 (164)
--..++.|.+.|++.+... | .|..-+|.+||.....
T Consensus 45 VYR~L~~L~e~Gli~~~~~~~~~~~Y~~~~~~~h~h~iC~~Cg~v~~~ 92 (120)
T PF01475_consen 45 VYRTLDLLEEAGLIRKIEFGDGESRYELSTCHHHHHFICTQCGKVIDL 92 (120)
T ss_dssp HHHHHHHHHHTTSEEEEEETTSEEEEEESSSSSCEEEEETTTS-EEEE
T ss_pred HHHHHHHHHHCCeEEEEEcCCCcceEeecCCCcceEEEECCCCCEEEe
Confidence 3468899999999876542 2 2335689999986654
No 65
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=34.04 E-value=43 Score=32.96 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee---E----E--cccCeeeeec
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV---E----P--LLKPQWYVRT 94 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i---~----~--~~~~QWFi~~ 94 (164)
...++...++..|.++|++++.... ++.|.+|++++ | + ...+..|++.
T Consensus 217 ~~~~~v~~~f~~L~ekGlIYr~~k~---V~wcp~c~TaLS~~EV~~~ykd~~dpsi~v~F 273 (1205)
T PTZ00427 217 TFMESVWWVFSELYKNNYVYKSFKV---MPYSCKCNTPISNFELNLNYKDTPDPSIIISF 273 (1205)
T ss_pred HHHHHHHHHHHHHHHCCCEEeccee---eccCCCCCCchhHHHhhcccccccCceEEEEe
Confidence 4457888999999999999976544 79999999874 2 2 2356677765
No 66
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=33.52 E-value=55 Score=23.92 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=31.7
Q ss_pred cCeeeeeccHHHHHHHHHHh-CCCcEEeCccchHHHHHHHhcCCCcccc-cCCCc
Q psy953 87 KPQWYVRTGEMAEKAVQAVK-TGELKIIPDHHTKTWYQWLENNREKKDR-IGESQ 139 (164)
Q Consensus 87 ~~QWFi~~~~~~~~~l~~i~-~~~i~~~P~~~k~~~~~wl~~~~DWcIS-wG~~i 139 (164)
..+-|+.-.+.++...+.++ ..+-+ .|=..-..+.++|.+-++|-++ ||.|-
T Consensus 14 ~q~~fl~r~~t~~lfr~i~~~~~~k~-w~f~~SplyLdfL~G~~~~~CtPWg~pt 67 (138)
T PF11946_consen 14 DQDHFLNREQTRELFRKIFAKGKKKK-WRFNHSPLYLDFLAGNRDYECTPWGNPT 67 (138)
T ss_pred hhhccCCHHHHHHHHHHHHHhcccCC-ccccCCHHHHHHHcCCCCCcccCCCCCc
Confidence 34567766655554444441 11222 3444567899999998899444 99864
No 67
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=32.44 E-value=53 Score=31.51 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=37.1
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee-----E--E--cccCeeeeecc
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV-----E--P--LLKPQWYVRTG 95 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i-----~--~--~~~~QWFi~~~ 95 (164)
...++...++..|.++|++.+.... ++.|.+|++++ + + +..+.+++++.
T Consensus 156 ~y~~~v~~~F~~l~~kGliyr~~~~---v~wcp~~~T~Ls~~Ev~~~y~~~~~~~~~v~f~ 213 (975)
T PRK06039 156 EYMESVWWALKQLYDKGLLYKGYRV---VPYCPRCETPLSNHEVAQGYKDVKDPSVYVKFK 213 (975)
T ss_pred HHHHHHHHHHHHHHHCCCEEeccee---eeecCCCCCCccHHHHhhcccccCCceEEEEEE
Confidence 3457888899999999999976544 68999999874 3 2 23578888774
No 68
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=32.24 E-value=19 Score=30.68 Aligned_cols=18 Identities=22% Similarity=0.719 Sum_probs=14.0
Q ss_pred CCCeeEEcccCeeeeecc
Q psy953 78 SKDVVEPLLKPQWYVRTG 95 (164)
Q Consensus 78 ~g~~i~~~~~~QWFi~~~ 95 (164)
-|..++++++||||.+-+
T Consensus 119 kgKKivfViSPQWFtk~G 136 (415)
T COG3966 119 KGKKIVFVISPQWFTKQG 136 (415)
T ss_pred cCceEEEEECchHhcccC
Confidence 455688899999998654
No 69
>COG1734 DksA DnaK suppressor protein [Signal transduction mechanisms]
Probab=32.08 E-value=17 Score=25.90 Aligned_cols=13 Identities=8% Similarity=0.378 Sum_probs=10.9
Q ss_pred ecceecCCCCeeE
Q psy953 71 VVPLCSRSKDVVE 83 (164)
Q Consensus 71 ~~p~c~R~g~~i~ 83 (164)
.|.+|.+||.+|-
T Consensus 79 tYG~Ce~cG~~Ip 91 (120)
T COG1734 79 TYGICEECGEPIP 91 (120)
T ss_pred CccchhccCCcCC
Confidence 4899999999764
No 70
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=31.41 E-value=56 Score=31.02 Aligned_cols=36 Identities=22% Similarity=0.185 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV 82 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i 82 (164)
...++...++..|.++|++.+.... ++.|.+|++++
T Consensus 108 ~y~~~v~w~F~~L~ekGliyrg~~~---v~wcp~~~t~l 143 (897)
T PRK12300 108 EYSKFIEWQFRKLKEKGLIVKGSHP---VRYCPNDNNPV 143 (897)
T ss_pred hHHHHHHHHHHHHHHCCCEecCCEe---eeeCCCCCCCc
Confidence 4457788999999999999976544 78999999875
No 71
>PLN02882 aminoacyl-tRNA ligase
Probab=31.30 E-value=47 Score=32.58 Aligned_cols=49 Identities=22% Similarity=0.204 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeE---E------cccCeeeeecc
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVE---P------LLKPQWYVRTG 95 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~---~------~~~~QWFi~~~ 95 (164)
...++...++..|.++|++++.... ++.|.+|++++- . ...+.+|+++.
T Consensus 153 ~~~~~v~~~f~~l~~kGliyr~~~~---v~wcp~~~TaLs~~E~~~~Yk~~~~~si~v~F~ 210 (1159)
T PLN02882 153 KFMESVWWVFKQLFEKGLVYKGFKV---MPYSTACKTPLSNFEAGLNYKDVSDPAVMVSFP 210 (1159)
T ss_pred HHHHHHHHHHHHHHHCCCEEeccee---EeecCCCCCCcchhhhhhhcccCCCcEEEEEEE
Confidence 3457889999999999999976433 789999998753 2 33567787764
No 72
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=29.46 E-value=37 Score=20.36 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=11.4
Q ss_pred CCCCHHHHHHHHHcCCCccc
Q psy953 6 PGHDHNDYEVAQRLNLPLIT 25 (164)
Q Consensus 6 PaH~~~D~~~~~~~~L~~~~ 25 (164)
|.|...-.++|+++++|.+.
T Consensus 1 ~~~N~~A~~~A~~~~lp~~~ 20 (56)
T PF13263_consen 1 PEANRRAAELAEKYGLPFTG 20 (56)
T ss_dssp -----HHHHHHHHTT--EEE
T ss_pred CcHHHHHHHHHHHcCCCeEe
Confidence 56778889999999998874
No 73
>PF10330 Stb3: Putative Sin3 binding protein; InterPro: IPR018818 This entry represents Sin3 binding proteins conserved in fungi. Sin3p does not bind DNA directly even though the yeast SIN3 gene functions as a transcriptional repressor. Sin3p is part of a large multiprotein complex []. Stb3 appears to bind directly to ribosomal RNA Processing Elements (RRPE) although there are no obvious domains which would accord with this, implying that Stb3 may be a novel RNA-binding protein [].
Probab=29.33 E-value=53 Score=22.26 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=24.3
Q ss_pred ceEecCCCCCCCccHHHHHHHHHHHHH
Q psy953 31 GVIIGDYGEFTGMKRFDARTRVTEVLT 57 (164)
Q Consensus 31 G~~~~~~~~f~G~~~~~ar~~Iie~L~ 57 (164)
|.++...+.|++++-.++|..|+..|+
T Consensus 28 ~~Lt~~vPgF~~ls~sKqRRLi~~ALE 54 (92)
T PF10330_consen 28 GYLTTSVPGFSDLSPSKQRRLIMAALE 54 (92)
T ss_pred HHHhccCCCcccCCHHHHHHHHHHHHh
Confidence 566667889999999999999999998
No 74
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=28.12 E-value=67 Score=30.69 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV 82 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i 82 (164)
...++...++..|.++|++.+.... ++.|.+|++++
T Consensus 147 ~y~~~v~~~f~~L~e~G~iy~g~~~---v~wcp~~~t~l 182 (938)
T TIGR00395 147 YYDRFIEWQMNKLKELGLIVKGEHP---VRYCPKDGNPV 182 (938)
T ss_pred hHHHHHHHHHHHHHHCCCEecCCee---EeecCCCCCCC
Confidence 3456778899999999999876544 78999999875
No 75
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=28.10 E-value=74 Score=22.60 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=16.8
Q ss_pred ceeCCCceEecCCCCCCCccHHHHHHHHHHHHH
Q psy953 25 TVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLT 57 (164)
Q Consensus 25 ~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~ 57 (164)
-+||.+|++... |.|....+.-+.++++|+
T Consensus 124 ~lid~~G~i~~~---~~g~~~~~~~~~~~~~~~ 153 (154)
T PRK09437 124 FLIDADGKIEHV---FDKFKTSNHHDVVLDYLK 153 (154)
T ss_pred EEECCCCEEEEE---EcCCCcchhHHHHHHHHh
Confidence 467777776633 445444444555665554
No 76
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=26.82 E-value=65 Score=24.54 Aligned_cols=66 Identities=23% Similarity=0.162 Sum_probs=38.2
Q ss_pred HHHHHHHcCCC-----------ccceeCCCceEecC--CCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCC
Q psy953 12 DYEVAQRLNLP-----------LITVFNEEGVIIGD--YGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRS 78 (164)
Q Consensus 12 D~~~~~~~~L~-----------~~~~id~~G~~~~~--~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~ 78 (164)
|-.+++.||+. ..-+||.+|++... .+.-.|.+..+. ++.|++. ...+++...-|..|+-
T Consensus 97 ~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~el----l~~l~~l---q~~~~~~~~~p~~w~~ 169 (203)
T cd03016 97 DREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEI----LRVVDAL---QLTDKHKVATPANWKP 169 (203)
T ss_pred hHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHH----HHHHHHH---hhHhhcCcCcCCCCCC
Confidence 45678888763 25778999988632 122346554443 3333332 1222334456999999
Q ss_pred CCeeEE
Q psy953 79 KDVVEP 84 (164)
Q Consensus 79 g~~i~~ 84 (164)
|..++.
T Consensus 170 g~~~~~ 175 (203)
T cd03016 170 GDDVIV 175 (203)
T ss_pred CCceec
Confidence 987664
No 77
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=26.39 E-value=1.1e+02 Score=27.47 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=35.1
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee-----EE--cccCeeeeecc
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV-----EP--LLKPQWYVRTG 95 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i-----~~--~~~~QWFi~~~ 95 (164)
...++...++..|.++|++...... +..|.+|++++ +. ...+..|+++.
T Consensus 138 ~y~~~v~~~F~~l~~kglIyr~~~p---v~w~p~~~t~lsd~Ev~~~~~~~~~~~v~f~ 193 (601)
T PF00133_consen 138 EYEKFVWWQFKKLYEKGLIYRGKKP---VNWCPSCQTALSDHEVEYKEVKSPSIYVKFP 193 (601)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEE---EEEETTTTEEE-GGGEEEEEEEEEEEEEEEE
T ss_pred cHhHHHHHHHHHHHhcCcEEeeCCC---CCcCcccccchhhhhcccccccCceEEEEEE
Confidence 3456788899999999999876443 68999999874 22 23456666653
No 78
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=26.06 E-value=2e+02 Score=23.67 Aligned_cols=56 Identities=18% Similarity=0.166 Sum_probs=38.5
Q ss_pred EeCC-CCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCC
Q psy953 3 KISP-GHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGL 61 (164)
Q Consensus 3 ~~~P-aH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~ 61 (164)
.++| .++....+...+.++|++.+-.... ...-.+-+.+.++|-..+++.|.++|.
T Consensus 119 Ii~~~~~~~~~~~~l~~~~~P~V~i~~~~~---~~~~~~V~~Dn~~~~~~a~~~L~~~G~ 175 (333)
T COG1609 119 ILLGERPNDSLLELLAAAGIPVVVIDRSPP---GLGVPSVGIDNFAGAYLATEHLIELGH 175 (333)
T ss_pred EEecCCCCHHHHHHHHhcCCCEEEEeCCCc---cCCCCEEEEChHHHHHHHHHHHHHCCC
Confidence 4455 5566667788888998876544322 112234677888999999999999883
No 79
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=25.36 E-value=1.6e+02 Score=21.64 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=28.2
Q ss_pred CccceeCCCceEe-cCCC--CCCCccHHHHHHHHHHHHHH
Q psy953 22 PLITVFNEEGVII-GDYG--EFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 22 ~~~~~id~~G~~~-~~~~--~f~G~~~~~ar~~Iie~L~~ 58 (164)
.....|+.+|.+. ...+ .-+|++..+|++.|.+.|.+
T Consensus 20 ~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 59 (165)
T TIGR03027 20 SGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAK 59 (165)
T ss_pred ccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHH
Confidence 3445788899875 2334 34899999999999999975
No 80
>PF12967 DUF3855: Domain of Unknown Function with PDB structure (DUF3855); InterPro: IPR024482 This domain forms an unusual alpha/beta fold where a six-stranded antiparallel beta-sheet is wrapped around a central alpha-helix, flanked by an additional alpha-helix and a small sub-domain consisting of a single beta-strand and a two-stranded antiparallel beta-sheet []. It shows weak structural similarities to phosphoribosylformylglycinamidine synthases and some thioesterase superfamily members, but its function is unknown.; PDB: 1O22_A.
Probab=24.38 E-value=38 Score=24.23 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=14.1
Q ss_pred CCccHHHHHHHHHHHHHHCCCee
Q psy953 41 TGMKRFDARTRVTEVLTEKGLYR 63 (164)
Q Consensus 41 ~G~~~~~ar~~Iie~L~~~g~l~ 63 (164)
.|.......+++.+.|.+-|.-+
T Consensus 14 k~k~~~~le~k~~ei~~etgisl 36 (158)
T PF12967_consen 14 KDKEFRILERKMREIFNETGISL 36 (158)
T ss_dssp TT---HHHHHHHHHHHHHHS---
T ss_pred cCchhhHHHHHHHHHHHhcCcee
Confidence 45666777889999999988754
No 81
>PRK13599 putative peroxiredoxin; Provisional
Probab=23.90 E-value=84 Score=24.36 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHcCC----------CccceeCCCceEecC--CCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCC--
Q psy953 13 YEVAQRLNL----------PLITVFNEEGVIIGD--YGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRS-- 78 (164)
Q Consensus 13 ~~~~~~~~L----------~~~~~id~~G~~~~~--~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~-- 78 (164)
-.++++||+ +..-+||.+|++... .+.-.|.++. .|++.|++. .....+...-|..|+-
T Consensus 101 ~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~----eilr~l~~l---q~~~~~~~~~p~~w~~~~ 173 (215)
T PRK13599 101 GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVD----EILRALKAL---QTADQYGVALPEKWPNNY 173 (215)
T ss_pred chHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHH----HHHHHHHHh---hhhhhcCCCcCCCCCCCC
Confidence 357778875 455778999988632 1233454444 344444432 1122234446999987
Q ss_pred --CCeeEE
Q psy953 79 --KDVVEP 84 (164)
Q Consensus 79 --g~~i~~ 84 (164)
|+.++.
T Consensus 174 ~~g~~~~~ 181 (215)
T PRK13599 174 LIKDHVIV 181 (215)
T ss_pred CCCCcEEE
Confidence 665543
No 82
>KOG0195|consensus
Probab=23.68 E-value=56 Score=27.25 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=11.0
Q ss_pred eEeCCCCCHHHHHH
Q psy953 2 VKISPGHDHNDYEV 15 (164)
Q Consensus 2 V~~~PaH~~~D~~~ 15 (164)
.|.+-|||.+|...
T Consensus 71 lhlaaahghrdivq 84 (448)
T KOG0195|consen 71 LHLAAAHGHRDIVQ 84 (448)
T ss_pred hhhhhhcccHHHHH
Confidence 47788999999753
No 83
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.24 E-value=1.9e+02 Score=20.85 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=26.3
Q ss_pred HHHHHHHHHHCCCeeeeee------ee------eecceecCCCCeeEEc
Q psy953 49 RTRVTEVLTEKGLYRGTVS------HA------MVVPLCSRSKDVVEPL 85 (164)
Q Consensus 49 r~~Iie~L~~~g~l~~~~~------~~------~~~p~c~R~g~~i~~~ 85 (164)
--..++.|.+.|++...+. |. |---+|..||..++..
T Consensus 58 VYr~L~~l~e~Glv~~~~~~~~~~~y~~~~~~~H~HliC~~CG~v~e~~ 106 (145)
T COG0735 58 VYRTLKLLEEAGLVHRLEFEGGKTRYELNSEPHHHHLICLDCGKVIEFE 106 (145)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCEEEEecCCCCcccEEEecCCCCEEEec
Confidence 3568899999999875443 32 3345899999877763
No 84
>PRK07217 replication factor A; Reviewed
Probab=23.10 E-value=48 Score=27.57 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHcCCCccceeCC-CceEe-----cCCCCCCCccHHHHHHHHHHHH
Q psy953 5 SPGHDHNDYEVAQRLNLPLITVFNE-EGVII-----GDYGEFTGMKRFDARTRVTEVL 56 (164)
Q Consensus 5 ~PaH~~~D~~~~~~~~L~~~~~id~-~G~~~-----~~~~~f~G~~~~~ar~~Iie~L 56 (164)
||.||.-+- .+.|-++.++|+ .|.++ +....+.|++..+|.+...+.|
T Consensus 205 C~~HG~ve~----~~DLrik~vlDDGt~~~~~~~~~e~te~l~G~~l~eak~~a~dal 258 (311)
T PRK07217 205 CSEHGKVEG----EFDLRIKGVLDDGEEVQEVIFNREATEELTGITLEEAKQMAMDAL 258 (311)
T ss_pred CCCCCCcCC----ceeeEEEEEEECCCCeEEEEEChHHhHHHhCCCHHHHHHHHHHhh
Confidence 788886554 567888888886 33332 1235789999999988876666
No 85
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=22.92 E-value=1.3e+02 Score=18.55 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 47 DARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 47 ~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
++-+.+++.|..+|.+.+...-.---..|..|+.
T Consensus 29 ~~ve~mL~~l~~kG~I~~~~~~~~~~~~C~~C~~ 62 (69)
T PF09012_consen 29 EAVEAMLEQLIRKGYIRKVDMSSCCGGSCSSCGP 62 (69)
T ss_dssp HHHHHHHHHHHCCTSCEEEEEE--SSSSSSS-SS
T ss_pred HHHHHHHHHHHHCCcEEEecCCCCCCCCCCCCCC
Confidence 5667899999999999876544322345655653
No 86
>PLN02959 aminoacyl-tRNA ligase
Probab=22.36 E-value=1.6e+02 Score=28.68 Aligned_cols=59 Identities=15% Similarity=-0.027 Sum_probs=39.5
Q ss_pred ceEecCCCCCCCcc----HHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEE-------cccCeeee
Q psy953 31 GVIIGDYGEFTGMK----RFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEP-------LLKPQWYV 92 (164)
Q Consensus 31 G~~~~~~~~f~G~~----~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~-------~~~~QWFi 92 (164)
|...+--..|--++ ...+-...+..|.++|++.+-... +..|.+|++++-- -.++|-|.
T Consensus 202 G~~iDW~r~f~T~d~np~y~~~v~wqf~~L~ekG~I~~g~rp---v~wcp~~~t~ladhe~~~~e~~~~~~y~ 271 (1084)
T PLN02959 202 GLGCDWRRSFITTDVNPYYDAFVRWQFRKLKKKGKIVKDKRY---TIYSPLDGQPCADHDRASGEGVGPQEYV 271 (1084)
T ss_pred CceEeCCCCcCCCCCChhHHHHHHHHHHHHHHCCCEEecCee---eeeCCCCCCCchhhHHhcCCCCCcceeE
Confidence 44443233554443 445678899999999999876544 7899999998632 23566663
No 87
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=22.27 E-value=96 Score=29.22 Aligned_cols=49 Identities=20% Similarity=0.224 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee-----EE------cccCeeeeecc
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV-----EP------LLKPQWYVRTG 95 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i-----~~------~~~~QWFi~~~ 95 (164)
...++...++..|.++|++.+.... ++.|.+|++++ +. ..++++|+++.
T Consensus 151 ~y~~~~~~~f~~l~~~gliyr~~~~---v~w~p~~~T~La~~Ev~~~~~~~~~~~~~~~v~f~ 210 (861)
T TIGR00392 151 SYEESQWWLFKEAHEKGLLYRGLKP---VYWSPRCRTALAEAEVEYKENYKDVKDPSIYVKFP 210 (861)
T ss_pred HHHHHHHHHHHHHHHCCCEeeccee---eecCCCcCCcccHHHHhcccccccccCceEEEEEE
Confidence 3456788899999999999876544 68899998874 32 24788998875
No 88
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.59 E-value=1.7e+02 Score=22.96 Aligned_cols=42 Identities=24% Similarity=0.306 Sum_probs=31.4
Q ss_pred CccceeCCCceEe-cCCCC--CCCccHHHHHHHHHHHHHHCCCee
Q psy953 22 PLITVFNEEGVII-GDYGE--FTGMKRFDARTRVTEVLTEKGLYR 63 (164)
Q Consensus 22 ~~~~~id~~G~~~-~~~~~--f~G~~~~~ar~~Iie~L~~~g~l~ 63 (164)
.....|+.+|.+. ...+. -.|++..|+++.|.+.|.+.+.+.
T Consensus 21 ~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~~~~~~ 65 (239)
T TIGR03028 21 TTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSKGGFVK 65 (239)
T ss_pred ceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhhcCccc
Confidence 3456788899875 23343 379999999999999998766543
No 89
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=21.01 E-value=79 Score=25.42 Aligned_cols=47 Identities=28% Similarity=0.359 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee--EEcccCeeeeeccH
Q psy953 43 MKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV--EPLLKPQWYVRTGE 96 (164)
Q Consensus 43 ~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i--~~~~~~QWFi~~~~ 96 (164)
++.++|.+.+++.|++.+...+ -+-|| =||+.- ...+.--+||.+++
T Consensus 130 IH~R~A~~d~~~iL~~~~~~~~------gi~Hc-FsGs~e~a~~~~d~G~yisisG 178 (256)
T COG0084 130 IHTRDAHEDTLEILKEEGAPVG------GVLHC-FSGSAEEARKLLDLGFYISISG 178 (256)
T ss_pred EEccccHHHHHHHHHhcCCCCC------EEEEc-cCCCHHHHHHHHHcCeEEEECc
Confidence 3556788899999988776111 12343 455432 22344558888874
No 90
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=20.40 E-value=1.9e+02 Score=21.07 Aligned_cols=30 Identities=23% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHc---CCCccceeCCCceEec
Q psy953 6 PGHDHNDYEVAQRL---NLPLITVFNEEGVIIG 35 (164)
Q Consensus 6 PaH~~~D~~~~~~~---~L~~~~~id~~G~~~~ 35 (164)
|-.+..+-.++++| ++|..-+||.+|++..
T Consensus 95 p~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~ 127 (146)
T cd03008 95 PFEDEFRRELEAQFSVEELPTVVVLKPDGDVLA 127 (146)
T ss_pred cccchHHHHHHHHcCCCCCCEEEEECCCCcEEe
Confidence 45555556788887 4688889999999874
Done!