Query psy953
Match_columns 164
No_of_seqs 158 out of 1450
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:58:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gax_A Valrs, valyl-tRNA synth 100.0 3.3E-43 1.1E-47 318.2 13.0 154 1-158 268-427 (862)
2 1ffy_A Isoleucyl-tRNA syntheta 100.0 2E-42 6.9E-47 314.9 3.8 140 1-142 323-466 (917)
3 1ile_A Ilers, isoleucyl-tRNA s 100.0 5E-40 1.7E-44 296.7 12.4 138 1-142 317-459 (821)
4 1wkb_A Leucyl-tRNA synthetase; 100.0 9.3E-34 3.2E-38 255.5 10.3 140 1-145 321-524 (810)
5 1wz2_A Leucyl-tRNA synthetase; 100.0 2.6E-34 8.9E-39 263.1 6.5 141 1-146 321-525 (967)
6 1wny_A Isoleucyl-tRNA syntheta 99.8 7.7E-20 2.6E-24 138.9 7.2 69 1-71 118-186 (186)
7 2v0c_A Aminoacyl-tRNA syntheta 99.8 8.3E-20 2.8E-24 165.8 7.6 63 1-64 336-413 (878)
8 4arc_A Leucine--tRNA ligase; l 99.8 1.2E-19 4.2E-24 164.4 8.7 64 1-65 354-432 (880)
9 1wka_A Valyl-tRNA synthetase; 99.8 3.9E-19 1.3E-23 130.4 7.3 66 1-68 77-146 (147)
10 3o0a_A Leucyl-tRNA synthetase 99.7 4.4E-18 1.5E-22 132.2 6.7 68 1-69 138-218 (219)
11 1rqg_A Methionyl-tRNA syntheta 99.7 1.4E-16 4.7E-21 142.3 8.9 138 2-142 46-242 (722)
12 2ajg_A Leucyl-tRNA synthetase; 99.6 2E-16 6.8E-21 121.0 6.5 65 1-65 117-195 (196)
13 3u1f_A Methionyl-tRNA syntheta 99.6 4.3E-16 1.5E-20 134.6 8.8 143 3-145 53-238 (542)
14 2wfg_A Cytosolic leucyl-tRNA s 99.6 5.6E-16 1.9E-20 123.3 5.5 74 1-74 134-258 (261)
15 4dlp_A Aminoacyl-tRNA syntheta 99.6 2.7E-15 9.1E-20 129.8 10.1 144 2-145 68-246 (536)
16 2d5b_A Methionyl-tRNA syntheta 99.6 1.4E-15 4.8E-20 130.3 8.1 144 2-145 46-222 (500)
17 2x1l_A Methionyl-tRNA syntheta 99.5 1.6E-14 5.6E-19 124.4 8.4 139 3-144 56-233 (524)
18 2csx_A Methionyl-tRNA syntheta 99.5 1.8E-14 6E-19 123.5 5.4 102 45-146 102-226 (497)
19 3h99_A Methionyl-tRNA syntheta 99.5 5.5E-14 1.9E-18 122.1 8.2 138 3-146 62-262 (560)
20 2wfd_A Leucyl-tRNA synthetase, 99.5 5.2E-14 1.8E-18 111.4 7.2 63 1-65 131-250 (252)
21 3kfl_A Methionyl-tRNA syntheta 99.5 6.2E-14 2.1E-18 122.0 6.8 144 2-145 69-255 (564)
22 3pz6_A Leurs, leucyl-tRNA synt 99.0 2.7E-10 9.3E-15 91.7 6.6 64 1-66 183-305 (311)
23 4arc_A Leucine--tRNA ligase; l 98.1 1.8E-06 6.1E-11 78.6 5.0 124 3-128 97-247 (880)
24 2v0c_A Aminoacyl-tRNA syntheta 97.8 3.7E-05 1.3E-09 70.1 7.3 122 3-127 77-226 (878)
25 3hcz_A Possible thiol-disulfid 34.1 70 0.0024 20.6 4.8 40 15-57 103-146 (148)
26 3drn_A Peroxiredoxin, bacterio 33.9 33 0.0011 23.3 3.2 44 12-58 95-146 (161)
27 1wkb_A Leucyl-tRNA synthetase; 28.9 57 0.002 29.0 4.5 34 45-81 159-192 (810)
28 3gl3_A Putative thiol:disulfid 28.0 76 0.0026 20.7 4.2 22 14-35 96-120 (152)
29 3bma_A D-alanyl-lipoteichoic a 27.0 18 0.00062 30.0 0.8 18 78-95 98-115 (407)
30 3gkn_A Bacterioferritin comigr 26.5 61 0.0021 21.7 3.5 35 21-58 125-159 (163)
31 2lja_A Putative thiol-disulfid 26.3 92 0.0032 20.3 4.3 22 14-35 99-123 (152)
32 2ywi_A Hypothetical conserved 26.1 76 0.0026 21.9 4.0 47 13-59 120-176 (196)
33 3fau_A NEDD4-binding protein 2 25.6 47 0.0016 20.4 2.5 21 39-59 4-24 (82)
34 3u5r_E Uncharacterized protein 25.6 1.1E+02 0.0038 21.9 5.0 22 13-34 133-157 (218)
35 2dlx_A UBX domain-containing p 25.2 1.1E+02 0.0038 21.1 4.7 53 8-63 86-142 (153)
36 3ixr_A Bacterioferritin comigr 25.2 97 0.0033 21.4 4.4 34 22-58 142-175 (179)
37 1gax_A Valrs, valyl-tRNA synth 24.4 62 0.0021 29.3 3.9 48 45-95 149-203 (862)
38 3raz_A Thioredoxin-related pro 24.2 50 0.0017 21.9 2.6 44 12-58 92-140 (151)
39 2d9i_A NEDD4-binding protein 2 24.0 51 0.0018 21.0 2.5 20 39-58 12-31 (96)
40 1o22_A Orphan protein TM0875; 23.8 25 0.00086 24.4 0.9 23 41-63 26-48 (170)
41 3mwm_A ZUR, putative metal upt 23.8 1.2E+02 0.0041 20.5 4.6 35 50-84 52-99 (139)
42 1ile_A Ilers, isoleucyl-tRNA s 23.3 70 0.0024 28.6 4.0 35 44-81 153-187 (821)
43 3fw2_A Thiol-disulfide oxidore 22.9 1.1E+02 0.0038 20.0 4.2 41 12-57 105-148 (150)
44 2ju5_A Thioredoxin disulfide i 22.6 1.2E+02 0.0042 20.3 4.4 25 11-35 104-131 (154)
45 3fkf_A Thiol-disulfide oxidore 22.5 93 0.0032 20.0 3.7 25 12-36 103-130 (148)
46 1hym_A CMTI-V, hydrolyzed cucu 22.2 90 0.0031 17.3 2.9 21 35-55 8-28 (45)
47 3tjj_A Peroxiredoxin-4; thiore 21.2 12 0.00041 28.6 -1.3 64 13-83 165-239 (254)
48 3eyt_A Uncharacterized protein 20.5 83 0.0029 20.7 3.2 41 14-57 108-152 (158)
49 3e3m_A Transcriptional regulat 20.4 1.3E+02 0.0043 23.1 4.6 53 6-61 135-187 (355)
50 1dtd_B Metallocarboxypeptidase 20.3 26 0.00088 20.1 0.3 6 155-160 45-50 (61)
51 1wz2_A Leucyl-tRNA synthetase; 20.2 65 0.0022 29.5 3.1 35 45-82 159-193 (967)
52 3lor_A Thiol-disulfide isomera 20.1 74 0.0025 21.0 2.8 40 15-57 112-155 (160)
No 1
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=100.00 E-value=3.3e-43 Score=318.21 Aligned_cols=154 Identities=29% Similarity=0.552 Sum_probs=144.3
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCC--CCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRS 78 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~--~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~ 78 (164)
|||+|||||++||++|++||||++++||++|+|++++ +.|.|+++++||++|++.|+++|++.+.+++.|++||||||
T Consensus 268 ~V~~~Pahd~~D~~~~~~~~L~~~~~id~~G~~~~~~~~g~~~Gl~~~~a~~~iv~~L~~~g~l~~~~~~~h~~p~c~R~ 347 (862)
T 1gax_A 268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDYTIALATCSRC 347 (862)
T ss_dssp EEECCGGGCHHHHHHHHHTTCCCCCSBCTTSBBCSSSSCTTTSSSBSSHHHHHHHHHHHTTTCEEEEEEEEECCEEETTT
T ss_pred ceEecCCCCchHHHHHHHcCCCccceeCCCCccccccCCcccCCcCHHHHHHHHHHHHHhCCCeeeeccccccCCeecCC
Confidence 6999999999999999999999999999999999888 89999999999999999999999999999999999999999
Q ss_pred CCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcccccCCCee
Q psy953 79 KDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTLSVEDPRTL 154 (164)
Q Consensus 79 g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~~~~~~~~~ 154 (164)
|+++++++++|||++++++++++++++++++++|+|+++++++.+||++++||||| ||+|||++.. ++.+++
T Consensus 348 ~~~i~~~~~~qWFv~~~~~~~~~l~~v~~~~~~~~P~~~~~~~~~wl~~l~DW~ISRqr~WG~pIP~w~~----~~~~~i 423 (862)
T 1gax_A 348 GTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWKKVNMDWLENVKDWNISRQLWWGHQIPAWYC----EDCQAV 423 (862)
T ss_dssp CSBCCEEECCEEEECHHHHHHHHHHHHHHTCCEESSSHHHHHHHHHHHTCCCCCCBCCCSSSCCCCCEEE----TTTCCE
T ss_pred CCeEEEEecceEEEEhHHHHHHHHHHHHcCCceEcCHHHHHHHHHHHhcccceeEecccCCCcccCceec----CCCCEE
Confidence 99999999999999999999999999987799999999999999999999999999 9999997421 234566
Q ss_pred eeec
Q psy953 155 WSPY 158 (164)
Q Consensus 155 ~~~~ 158 (164)
||++
T Consensus 424 ~v~~ 427 (862)
T 1gax_A 424 NVPR 427 (862)
T ss_dssp ECCC
T ss_pred EEec
Confidence 6654
No 2
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=100.00 E-value=2e-42 Score=314.88 Aligned_cols=140 Identities=26% Similarity=0.389 Sum_probs=137.0
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||++|++||||++++||++|+|+++.+.|+|+++++||++|++.|+++|.+++.+++.|++|||||||+
T Consensus 323 ~V~~~Pah~~~D~~~~~~~~L~~~~~vd~~G~~~~~~~~~~G~~v~~A~~~Ii~~L~~~g~l~~~~~~~hs~p~c~R~~~ 402 (917)
T 1ffy_A 323 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKGALLKLDFITHSYPHDWRTKK 402 (917)
T ss_dssp CCCBCTTSCSHHHHTTTSSSCCCCCCCCSSSCCCTTCSSCSSSCSSHHHHTTGGGSSHHHHCCCCEEEEEEEEEETTTCC
T ss_pred eeEeCCCCCHHHHHHHHHcCCCeeeeECCCceeCCcccccCCcCHHHHHHHHHHHHHhCCCccccccccccCCEecCCCC
Confidence 69999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
++++++++|||+++++++++++++++ +++|+|+++++++.+||++++||||| ||+|||++
T Consensus 403 pv~~r~t~QWFi~~~~lr~~~l~~i~--~~~~~P~~~~~r~~~~l~~~~DW~ISRqr~WG~PIP~~ 466 (917)
T 1ffy_A 403 PVIFRATPQWFASISKVRQDILDAIE--NTNFKVNWGKTRIYNMVRDRGEWVISRQRVWGVPLPVF 466 (917)
T ss_dssp BCEEEEEEEEEECHHHHHHHHHHHHH--TSEESSHHHHHHHHHHHHHCCCEECEESCSSSCBCCCE
T ss_pred EEEEEeccceEeeHHHHHHHHHHHHh--cCcccCHHHHHHHHHHHhcCccceeeccCCcCccccee
Confidence 99999999999999999999999998 69999999999999999999999999 99999974
No 3
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=100.00 E-value=5e-40 Score=296.72 Aligned_cols=138 Identities=22% Similarity=0.386 Sum_probs=133.0
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCC
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKD 80 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~ 80 (164)
|||+|||||++||++|++||||++++||++|+|++. + |+|+++++||++|++.|+++|++.+.++|.|++|||||||+
T Consensus 317 ~V~~~Pah~~~D~~~~~~~~l~~~~~id~~G~~~~~-~-~~G~~~~~a~~~i~~~L~~~g~~~~~~~~~h~~p~c~r~~~ 394 (821)
T 1ile_A 317 IVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHSYPHCWRCST 394 (821)
T ss_dssp CEECCTTSCHHHHHHHHHTTCCCCCCBCTTSBBCSG-G-GTTCBHHHHHHHHHHHHHHTTCEEEEEEEEEEEEBCSSSCC
T ss_pred ceEecCCCCHHHHHHHHHcCCCcceeECCCCcCccc-C-cCCCCHHHHHHHHHHHHHhCCCeeeeecccccCCEecCCCC
Confidence 799999999999999999999999999999999977 6 99999999999999999999999999999999999999999
Q ss_pred eeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccch-HHHHHHHhcCCCcccc----cCCCcccc
Q psy953 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT-KTWYQWLENNREKKDR----IGESQPFR 142 (164)
Q Consensus 81 ~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k-~~~~~wl~~~~DWcIS----wG~~iP~~ 142 (164)
++++++++|||+++++++++++++++ +++|+|++.+ +++.+||++++||||| ||+|||++
T Consensus 395 ~~~~~~~~qWF~~~~~~~~~~~~~~~--~~~~~P~~~~~~~~~~~l~~l~DW~ISRqr~WG~pIP~~ 459 (821)
T 1ile_A 395 PLMYYATESWFIKNTLFKDELIRNNQ--EIHWVPPHIKEGRYGEWLKNLVDWALSRNRYWGTPLPIW 459 (821)
T ss_dssp BCEEEECCEEEECGGGGHHHHHHHHH--HSEESSGGGTTTTTHHHHHTCCCEECCBCCSSSCBCCEE
T ss_pred EEEEEecchhhhchHHHHHHHHHHhc--CeEEECchhhHhHHHHHHhCCchheecccCCCCCeeeEE
Confidence 99999999999999999999999998 6999999984 6999999999999999 99999953
No 4
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.3e-34 Score=255.52 Aligned_cols=140 Identities=19% Similarity=0.311 Sum_probs=120.7
Q ss_pred CeEeCCCCCHHHHHH----------HHHcCCC--------ccceeCC---------------------------------
Q psy953 1 AVKISPGHDHNDYEV----------AQRLNLP--------LITVFNE--------------------------------- 29 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~----------~~~~~L~--------~~~~id~--------------------------------- 29 (164)
|||+|||||++||++ |++|||| ++++|+.
T Consensus 321 ~V~~~Pah~~~D~~~~~~~~~~~~~~~k~~l~~~~~~~l~~~~vi~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~ 400 (810)
T 1wkb_A 321 VVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTI 400 (810)
T ss_dssp CEEECTTTCHHHHHHHCCCSCCSCCCTTCSCCCCCC----------------CCTTCCSGGGTSCCCTTCSCTHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHhhccchhHHHHcCCChhhcccccceeeeccCCccccchhhhhhhccCCCcchhhhhhhhhhhh
Confidence 799999999999975 5788987 7777632
Q ss_pred ------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEc-ccCeeeeeccH--HHHH
Q psy953 30 ------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPL-LKPQWYVRTGE--MAEK 100 (164)
Q Consensus 30 ------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~-~~~QWFi~~~~--~~~~ 100 (164)
+|+|+ ++.|+|+.+++|++.|++.|+++|++.+.+.+.| +|+|||||++++++ +++|||+++++ ++++
T Consensus 401 ~~~~~~~G~~~--~g~~~G~~v~~a~~~i~~~L~~~g~~~~~~~~~~-~~~~~r~g~~vi~~~~~~qwF~~~~~~~~~~~ 477 (810)
T 1wkb_A 401 YKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477 (810)
T ss_dssp HHHHHHSCEEC--SGGGTTEEHHHHHHHHHHHHHTTTSEEEEEEESS-SCCBCTTSCBCEEEEEEEEEEECTTCHHHHHH
T ss_pred hhccccCceEe--ccCcCCeEHHHhHHHHHHHHHhCCCeeeEEecCC-CCcCCCCCCEEEEEecCCceeEecChHHHHHH
Confidence 57776 6889999999999999999999999987766654 69999999998888 79999999985 9999
Q ss_pred HHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCc
Q psy953 101 AVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERT 145 (164)
Q Consensus 101 ~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~ 145 (164)
++++++ +++|+|++.++++.+||++++||||| ||+|||+++.+
T Consensus 478 ~l~~~~--~~~~~P~~~~~~~~~~l~~l~Dw~ISRq~~WG~piP~d~~~ 524 (810)
T 1wkb_A 478 ARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEW 524 (810)
T ss_dssp HHHHHH--TSEEESGGGHHHHHHHHHHCCCEECEESSSBSCEETTEEEE
T ss_pred HHhhhc--ccEEECcchhchHHHHhhcccCccccccCCCCCcCCcCcce
Confidence 999998 69999999999999999999999999 99999987654
No 5
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.6e-34 Score=263.06 Aligned_cols=141 Identities=19% Similarity=0.319 Sum_probs=120.9
Q ss_pred CeEeCCCCCHHHHHH----------HHHcCCC--------ccceeCC---------------------------------
Q psy953 1 AVKISPGHDHNDYEV----------AQRLNLP--------LITVFNE--------------------------------- 29 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~----------~~~~~L~--------~~~~id~--------------------------------- 29 (164)
|||+|||||++||++ |++|||| ++++|+.
T Consensus 321 ~V~~~Pah~~~Dy~~~~~~~~~~~~~~k~~l~~~~~~~l~~i~vi~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~a~~~~ 400 (967)
T 1wz2_A 321 VVMSVPAHAPFDHVALEDLKRETEILEKYDIDPRIVENITYISLIKLEGYGDFPAVEEVNKLGIKSQKDKEKLEQATKTI 400 (967)
T ss_dssp CEEECTTSCTTTTTTTSCCSCCSCCCCTTCCCCCCC----------------CCSSCCTTTSSSCCCSSCTTHHHHTTHH
T ss_pred cEEeecCCCHHHHHHHHhhccchhHHHHcCCchhhcccccceeeeecCCccccchhhhhhhccCCCccchHHHHHHHHHh
Confidence 799999999999974 6888987 6777631
Q ss_pred ------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCeeEEc-ccCeeeeecc--HHHHH
Q psy953 30 ------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPL-LKPQWYVRTG--EMAEK 100 (164)
Q Consensus 30 ------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i~~~-~~~QWFi~~~--~~~~~ 100 (164)
+|+|+ ++.|+|+++++||+.|++.|+++|++.+.+.+.| +|+|||||++++++ +++|||++++ .++++
T Consensus 401 y~~~~~~G~~~--~g~~~G~~v~ea~~~i~~~L~~~g~l~~~~~~~~-~p~~~R~g~~~i~~~~~~qWFi~~~~~~~k~~ 477 (967)
T 1wz2_A 401 YKAEYHKGIFK--VPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAE-KNVISRFGNRAVIKIIHDQWFIDYGNPEWKEK 477 (967)
T ss_dssp HHHHHHSCBCC--SSSSCSSBHHHHTTTTHHHHHHHTSEEECCEESS-SCCBCSSSSBCEECCCSSCEEEESCCTTHHHH
T ss_pred hhccccCceEe--ccCcCCcCHHHHHHHHHHHHHhCCCceEEEecCC-CceECCCCCEEEEeccCCccceecCchHHHHH
Confidence 67776 6889999999999999999999999997655443 79999999999988 6999999998 49999
Q ss_pred HHHHHhCCCcEEeCccchHHHHHHHhcCCCcccc----cCCCcccccCcc
Q psy953 101 AVQAVKTGELKIIPDHHTKTWYQWLENNREKKDR----IGESQPFRERTL 146 (164)
Q Consensus 101 ~l~~i~~~~i~~~P~~~k~~~~~wl~~~~DWcIS----wG~~iP~~~~~~ 146 (164)
++++++ +++|+|+++++++.+||++++||||| ||+|||+|+.|+
T Consensus 478 ~l~~~~--~~~~~P~~~~~~~~~~l~~l~DW~ISRqr~WG~piP~d~~~~ 525 (967)
T 1wz2_A 478 ARKALE--RMKILPETRRAQFEAIIDWLDKKACARKIGLGTPLPWDPEWV 525 (967)
T ss_dssp HHHHHT--TSCEESSTTHHHHHHHHHSCCEECCCBSSSSSEECTTCTTSE
T ss_pred HHHhhh--ccEeeCccccchHHHhhhcccCeeeccCCCCCccCCcCcccc
Confidence 999997 69999999999999999999999999 999999976653
No 6
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A
Probab=99.80 E-value=7.7e-20 Score=138.93 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=63.2
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMV 71 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~ 71 (164)
|||+|||||++||++|++||||++++||++|+|++. + |+|+++++|+++|++.|+++|++.+.++|.|+
T Consensus 118 ~V~~aPahg~~D~~~~~~~~L~i~~~id~~G~~~~~-~-~~Gl~v~~A~~~Ii~~L~~~g~l~~~~~~~Hs 186 (186)
T 1wny_A 118 IVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE-P-FKGLYFREANRAILRDLRGRGLLFKEESYLHS 186 (186)
T ss_dssp CEEECGGGCHHHHHHHHHHTCCCCCCBCTTSBBCST-T-CTTCBHHHHHHHHHHHHHHTTCEEEEEC----
T ss_pred cEEEcCCCCHHHHHHHHHcCCceEeeeCCCccCccC-C-CCCcCHHHHHHHHHHHHHHCCCeecceeEEcC
Confidence 799999999999999999999999999999999976 7 99999999999999999999999999999885
No 7
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=99.79 E-value=8.3e-20 Score=165.84 Aligned_cols=63 Identities=35% Similarity=0.701 Sum_probs=56.2
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCC---------------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNE---------------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRG 64 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~---------------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~ 64 (164)
|||+|||||++||++|++||||++++|++ +|.+. +++.|+|+++++|+++|++.|+++|++.+
T Consensus 336 ~V~~~PaHd~~D~~~~~k~~L~i~~vi~~~~~~~~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~Ii~~L~~~g~~~~ 413 (878)
T 2v0c_A 336 AIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV-NSGPFDGTESEEGKRKVIAWLEEKGLGKG 413 (878)
T ss_dssp EEEECTTTCHHHHHHHHHHTCCCCCCEECSSSCCCSSCSSCCCSCCEEC-SSGGGTTCBHHHHHHHHHHHHHHHTSEEE
T ss_pred eEEeCCCCCHHHHHHHHHcCCCceeeeCCCCccccccccccccCCeeEe-cCCCCCCcCHHHHHHHHHHHHHHCCCCCC
Confidence 69999999999999999999999999974 45553 46789999999999999999999999643
No 8
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=99.79 E-value=1.2e-19 Score=164.44 Aligned_cols=64 Identities=34% Similarity=0.565 Sum_probs=57.2
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCC---------------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNE---------------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGT 65 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~---------------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~ 65 (164)
|||+|||||++||+||++||||++++|+. +|++. +++.|+||++++|+++|++.|+++|++.+.
T Consensus 354 aV~~~Pahd~~D~~~~~~~~Lpi~~vi~~~~~~~~~~~~~~~~~~g~~~-ns~~~~Gl~~~eA~~~ii~~L~~~g~~~~~ 432 (880)
T 4arc_A 354 AVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFNAIADKLTAMGVGERK 432 (880)
T ss_dssp EEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSCCCCCSSSCCCSCCCBC-SSGGGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEEEccCCCHHHHHHHHHcCCCceEeeccCcccccccccccccCCceee-cCcccCCCCHHHHHHHHHHHHHHcCCccee
Confidence 69999999999999999999999999863 45554 578999999999999999999999997765
No 9
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus, translation, amino acid, structural genomics; 1.70A {Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Probab=99.77 E-value=3.9e-19 Score=130.35 Aligned_cols=66 Identities=33% Similarity=0.584 Sum_probs=62.6
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCCCceEecCCCC----CCCccHHHHHHHHHHHHHHCCCeeeeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE----FTGMKRFDARTRVTEVLTEKGLYRGTVSH 68 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~----f~G~~~~~ar~~Iie~L~~~g~l~~~~~~ 68 (164)
|||+|||||++||++|++||||++++||++|+| +++. |+|+++++||++|++.|+++|++.+.++|
T Consensus 77 ~V~~~Pah~~~D~~~~~~~~L~~~~~id~~G~~--~~~~~~~~~~Gl~~~~A~~~Ii~~L~~~g~l~~~~~~ 146 (147)
T 1wka_A 77 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRM--EGERVPEALRGLDRFEARRKAVELFREAGHLVKEEDY 146 (147)
T ss_dssp EEEECTTTCHHHHHHHHHHTCCCCCSBCTTSBB--CSTTSCGGGTTSBHHHHHHHHHHHHHHHTCEEEEEEC
T ss_pred cEEEccCCCHHHHHHHHHcCCCcceEECCCCEE--cCCCcccccCCcCHHHHHHHHHHHHHHCCCeeeeeEc
Confidence 699999999999999999999999999999999 5666 99999999999999999999999998776
No 10
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- protein biosynthesis; 1.77A {Aquifex aeolicus} PDB: 3pz0_A 3pz5_A
Probab=99.73 E-value=4.4e-18 Score=132.25 Aligned_cols=68 Identities=31% Similarity=0.580 Sum_probs=58.8
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeCC-------------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFNE-------------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTVS 67 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id~-------------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~ 67 (164)
|||+|||||++||++|++||||++++|++ +|+|. +++.|+||++++|+++|++.|+++|++.+.++
T Consensus 138 aV~~aPaHd~~D~~~~~k~~Lpi~~vi~~~~~~~~~~g~ft~~g~~~-~~~~~~Gl~~~eA~~~Ii~~L~~~g~l~~~~~ 216 (219)
T 3o0a_A 138 AIMCVPAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLV-NSDGFDGLDSETAKRKITEWLQDRGLGEKKVS 216 (219)
T ss_dssp EEEECTTTCHHHHHHHHHHTCCCCCCEECSSCCCTTTCCCCSCCEEC-SCGGGTTCBHHHHHHHHHHHHHHTTSEEEC--
T ss_pred eEEECCCCCHHHHHHHHHcCCCceeeeCCccccccccccccccceEe-cCCCCCCCCHHHHHHHHHHHHHHCCCeeeeee
Confidence 69999999999999999999999999986 45554 46789999999999999999999999999888
Q ss_pred ee
Q psy953 68 HA 69 (164)
Q Consensus 68 ~~ 69 (164)
|+
T Consensus 217 yr 218 (219)
T 3o0a_A 217 YR 218 (219)
T ss_dssp --
T ss_pred ec
Confidence 75
No 11
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.66 E-value=1.4e-16 Score=142.30 Aligned_cols=138 Identities=13% Similarity=0.133 Sum_probs=104.8
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCce-Ee-------cCCCCC-CCc--cHHHHHHHHHHHHHHCCCeeeeee---
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGV-II-------GDYGEF-TGM--KRFDARTRVTEVLTEKGLYRGTVS--- 67 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G~-~~-------~~~~~f-~G~--~~~~ar~~Iie~L~~~g~l~~~~~--- 67 (164)
|..+..||..--..|.+.|+.+....++... +. -..+.| .-. ...++.+.++..|.++|+++..+.
T Consensus 46 v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~~~lgis~D~~~rT~d~~~~~~v~~~f~~L~~kG~iY~~~~~v~ 125 (722)
T 1rqg_A 46 ICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITFQRAKISFDFFGRTELPIHYKLSQEFFLKAYENGHLVKKVTKQA 125 (722)
T ss_dssp EEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCCeeCCCHHHHHHHHHHHHHHHHCCCEEecceeee
Confidence 4566778888888888888877666553110 00 011111 111 245677899999999999986432
Q ss_pred ----------------------------------------eeeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhC
Q psy953 68 ----------------------------------------HAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKT 107 (164)
Q Consensus 68 ----------------------------------------~~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~ 107 (164)
..+..|+|+|||++++++.++|||++++++++++++.+++
T Consensus 126 y~~~~~tfl~d~~v~gtcP~c~~~~~~Gd~c~~~G~~l~~~~l~~p~~~r~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~ 205 (722)
T 1rqg_A 126 YCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIKMQDFAERLKRWIEK 205 (722)
T ss_dssp EBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEECGGGTHHHHHHHHHS
T ss_pred ecCCCCcCcchhhcccccCccCCccCCcchhhhcccccChhhccCCcccCCCcEeEEEEeccEEEEhHHHHHHHHHHHHh
Confidence 1234689999999999999999999999999999999985
Q ss_pred CCcEEeCccchHHHHHHH-hcCCCcccc----cCCCcccc
Q psy953 108 GELKIIPDHHTKTWYQWL-ENNREKKDR----IGESQPFR 142 (164)
Q Consensus 108 ~~i~~~P~~~k~~~~~wl-~~~~DWcIS----wG~~iP~~ 142 (164)
.. .|++.++++.+|| ++++||||| ||+|+|++
T Consensus 206 --~~-wp~~~~~~~~~wl~~gl~dw~ISR~~~WG~piP~~ 242 (722)
T 1rqg_A 206 --QP-WKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLD 242 (722)
T ss_dssp --SC-CCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCC
T ss_pred --CC-CCHHHHHHHHHHHHCCCcccceeccccCccccCcc
Confidence 44 4999999999999 789999999 99999973
No 12
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia coli} PDB: 2ajh_A 2aji_A
Probab=99.64 E-value=2e-16 Score=120.98 Aligned_cols=65 Identities=31% Similarity=0.483 Sum_probs=57.8
Q ss_pred CeEeCCCCCHHHHHHHHHcCCCccceeC---------CCceEecC-----CCCCCCccHHHHHHHHHHHHHHCCCeeee
Q psy953 1 AVKISPGHDHNDYEVAQRLNLPLITVFN---------EEGVIIGD-----YGEFTGMKRFDARTRVTEVLTEKGLYRGT 65 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~~~L~~~~~id---------~~G~~~~~-----~~~f~G~~~~~ar~~Iie~L~~~g~l~~~ 65 (164)
|||+|||||++||++|++||||++++|+ ++|.|+++ +++|+|+++++|+++|++.|+++|++.++
T Consensus 117 ~V~~aPah~~~D~~~~~k~~L~i~~vI~~~~g~~~d~~~g~y~~~g~~~ns~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 195 (196)
T 2ajg_A 117 AVMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDHEAAFNAIADKLTAMGVGERK 195 (196)
T ss_dssp EEEECTTTCHHHHHHHHHHTCCCCCCBCCTTSSCCCCSSSCCCSCCCBCSSGGGTTCCHHHHHHHHHHHHHHTTSEEEE
T ss_pred eEEECCCCCHHHHHHHHHcCCCceeEEeCCcCcccccccccccCCceEecCcccCCeEHHHHHHHHHHHHHHCCCceee
Confidence 6999999999999999999999999996 35666543 36799999999999999999999998764
No 13
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=99.64 E-value=4.3e-16 Score=134.64 Aligned_cols=143 Identities=11% Similarity=0.032 Sum_probs=108.6
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCCCc-eEec-------CCCCC-CCc--cHHHHHHHHHHHHHHCCCeeeeeee---
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNEEG-VIIG-------DYGEF-TGM--KRFDARTRVTEVLTEKGLYRGTVSH--- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~~G-~~~~-------~~~~f-~G~--~~~~ar~~Iie~L~~~g~l~~~~~~--- 68 (164)
..+..||..--.-|.+.|+.+....++.. .+.+ ..+.| .-+ ...++...++..|.++|++......
T Consensus 53 ~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~~~lgi~~D~~~~T~~~~~~~~v~~~f~~L~~~G~iy~~~~~v~~ 132 (542)
T 3u1f_A 53 TGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCFEQMDYSIDYFIRTTNEQHKAVVKELWTKLEQKGDIYLGRYEGWY 132 (542)
T ss_dssp EEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCCCSEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred CccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCccCCCHHHHHHHHHHHHHHhhcCcEEecceeEEe
Confidence 34556777777777888877665554311 0000 01111 111 2456788899999999999865431
Q ss_pred --------------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc-
Q psy953 69 --------------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN- 127 (164)
Q Consensus 69 --------------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~- 127 (164)
-+.+++|+|||++++++.++|||++++++++++++.++++...+.|++.++.+.+|+++
T Consensus 133 ~~~~~~~l~d~~v~~~~~~~g~~~~~~~~sg~~ve~~~~~~~f~~l~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~ 212 (542)
T 3u1f_A 133 SISDESFLTPQNITDGVDKDGNPCKVSLESGHVVTWVSEENYMFRLSAFRERLLEWYHANPGCIVPEFRRREVIRAVEKG 212 (542)
T ss_dssp ETTTTEEECGGGEEEEECTTSCEEEEETTTCCBEEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHHC
T ss_pred eccCcccchhhhhhccccccCccccccCCCCCcceeeccccceecchhHHHHHHHHHhhcccccCCchhhHhHhhhhhcc
Confidence 13468999999999999999999999999999999998778899999999999999998
Q ss_pred CCCcccc--------cCCCcccccCc
Q psy953 128 NREKKDR--------IGESQPFRERT 145 (164)
Q Consensus 128 ~~DWcIS--------wG~~iP~~~~~ 145 (164)
++||||| ||+|+|.++++
T Consensus 213 l~Dw~ISRq~~~~~~WGipiP~~~~~ 238 (542)
T 3u1f_A 213 LPDLSVSRARATLHNWAIPVPGNPDH 238 (542)
T ss_dssp CCCEECEEEGGGGTTCSCEETTEEEE
T ss_pred ccccCccccccCcCCCCCccCCCcCe
Confidence 7999999 99999988764
No 14
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain, hydrolysis of MIS-charged trnas, benzoxaborole, anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB: 2wfe_A*
Probab=99.60 E-value=5.6e-16 Score=123.26 Aligned_cols=74 Identities=19% Similarity=0.276 Sum_probs=59.4
Q ss_pred CeEeCCCCCHHHHHHHHH-------cC-------CCccceeCC--CceE-------------------------------
Q psy953 1 AVKISPGHDHNDYEVAQR-------LN-------LPLITVFNE--EGVI------------------------------- 33 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~-------~~-------L~~~~~id~--~G~~------------------------------- 33 (164)
|||+|||||++||++|++ || ||++++|+. +|.+
T Consensus 134 ~V~~vPaHd~~Dy~~~~kl~~~~~~ygi~~~~~~L~i~~vId~~~~g~~~~~~~~~~~~i~s~~d~~~l~~a~~~~y~~G 213 (261)
T 2wfg_A 134 VVTCVPSDSPDDFVTTRDLANKPEYYGIEKDWVQTDIVPIVHTEKYGDKCAEFLVNDLKIQSPKDSVQLANAKELAYKEG 213 (261)
T ss_dssp CEEECTTTCHHHHHHHHHHHHSTTTTTCCGGGCCCCCCCCEEBTTTBTCHHHHHHHHTTCCSTTCHHHHHHHHHHHHHHH
T ss_pred eeEEcCCCCHHHHHHHHHhhcchhhcCCccccccCCceeEEcCcccCccchhhhhccccccccchhhhhhhhhhhhhhcc
Confidence 799999999999999999 99 899999986 3322
Q ss_pred --ecC--CCCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecce
Q psy953 34 --IGD--YGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPL 74 (164)
Q Consensus 34 --~~~--~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~ 74 (164)
... ++.|+|+++++|++.|++.|+++|++.+.+++.|+.-|
T Consensus 214 ~~~g~~~~g~f~Gl~v~eA~~~Ii~~L~~~G~~~~~~~~~h~~~~ 258 (261)
T 2wfg_A 214 FYNGTMLIGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEHHH 258 (261)
T ss_dssp HHHCEECSSTTTTSBHHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred cccceEeccccCCeEHHHHHHHHHHHHHHCCCeeeeeeeeecccc
Confidence 111 67899999999999999999999999999999887543
No 15
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=99.60 E-value=2.7e-15 Score=129.81 Aligned_cols=144 Identities=10% Similarity=0.110 Sum_probs=103.7
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCC--------ceEecCCCCC--C-CccHHHHHHHHHHHHHHCCCeeeeeeeee
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEE--------GVIIGDYGEF--T-GMKRFDARTRVTEVLTEKGLYRGTVSHAM 70 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~--------G~~~~~~~~f--~-G~~~~~ar~~Iie~L~~~g~l~~~~~~~~ 70 (164)
|..+..||..-...|.+.|+.+..+.++. ..+.-..+.| . -....+.-+.+++.|.++|++...+.-..
T Consensus 68 ~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~~lgi~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~~~ 147 (536)
T 4dlp_A 68 LTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAEVLNSSNDDYIRTSEERHYKASQAIWQAMVANGDIYKGGYAGW 147 (536)
T ss_dssp EEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCcceeCCCHHHHHHHHHHHHHHHHCCCEEEeceeee
Confidence 34456677776677777777665444320 0000001111 1 11245677889999999999986542110
Q ss_pred ------------------ecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHh-cCCCc
Q psy953 71 ------------------VVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLE-NNREK 131 (164)
Q Consensus 71 ------------------~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~-~~~DW 131 (164)
...+|+|||++++++.++|||++++++++.+++.++++...+.|+..++++.+||+ +++||
T Consensus 148 ~~~~~~~~l~~~~~~~~~~g~~c~~~g~~~e~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~~l~~~l~D~ 227 (536)
T 4dlp_A 148 YSVRDEAYYGEEETEVRADGVRYGPQGTPVEWVEEESYFFRLSAYQDKLLDLYENNPGFIMPAERRNEIVSFVKSGLKDL 227 (536)
T ss_dssp EETTTTEEECGGGCEECTTSCEECTTSSBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHTCCCCE
T ss_pred ecCCcCcccCHHHhhcCCCCCcccCCCCcceEEeccceEEecHHHHHHHHHHHHhCCCccCcHHHHHHHHHHHhcCCCcc
Confidence 01269999999999999999999999999999999865566789999999999998 69999
Q ss_pred ccc-----cCCCcccccCc
Q psy953 132 KDR-----IGESQPFRERT 145 (164)
Q Consensus 132 cIS-----wG~~iP~~~~~ 145 (164)
||| ||+|+|.++++
T Consensus 228 ~ISR~~~~WGipiP~~~~~ 246 (536)
T 4dlp_A 228 SISRTTFDWGIPVPGDEKH 246 (536)
T ss_dssp ECEEC--CCSCBCTTCTTS
T ss_pred CCccCCCcCCeeCCCCCCC
Confidence 999 99999977543
No 16
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.60 E-value=1.4e-15 Score=130.29 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=107.1
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc-eEec-------CCCC-CCCcc--HHHHHHHHHHHHHHCCCeeeeeee--
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG-VIIG-------DYGE-FTGMK--RFDARTRVTEVLTEKGLYRGTVSH-- 68 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G-~~~~-------~~~~-f~G~~--~~~ar~~Iie~L~~~g~l~~~~~~-- 68 (164)
|..+..||......|++.|+++....++.. .+.+ ..+. +.-.+ ..++-..+++.|.++|++...+.-
T Consensus 46 ~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d~~~~t~~~~~~~~~~~~~~~L~~~G~iy~~~~~~~ 125 (500)
T 2d5b_A 46 LTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWDLLGIAYDDFIRTTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125 (500)
T ss_dssp EEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCcCCCCcccCCHHHHHHHHHHHHHHHHCCCEEecceEEe
Confidence 345678999999999999987765554311 0000 0111 11112 567888999999999999865311
Q ss_pred ------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc-CCCcccc-
Q psy953 69 ------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN-NREKKDR- 134 (164)
Q Consensus 69 ------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~-~~DWcIS- 134 (164)
....++|+|||.+++.+.++|||++++++++++++.++++...+.|+..++.+.+|++. ++|||||
T Consensus 126 ~~~~~~~~~~~~~l~~g~c~~~~~~v~~~~~~~wf~~l~~~~~~l~~~~~~~~~~~~p~~~~~~~~~~l~~~l~Dw~iSR 205 (500)
T 2d5b_A 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEVLAMLAEPIGDLSISR 205 (500)
T ss_dssp EETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHHHHHHTSCCCCEECEE
T ss_pred cCCCcCcccCchhccCCcCCCCCCeeeEEecCceEEEcHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHhcCCCCeeccc
Confidence 11236799999999999999999999999999999998644456799999999999964 7999996
Q ss_pred ------cCCCcccccCc
Q psy953 135 ------IGESQPFRERT 145 (164)
Q Consensus 135 ------wG~~iP~~~~~ 145 (164)
||+|+|+++++
T Consensus 206 p~~~~~WG~piP~~~~~ 222 (500)
T 2d5b_A 206 PKSRVPWGIPLPWDENH 222 (500)
T ss_dssp ETTTCCSSCEETTEEEE
T ss_pred ccccccCccccCCCCCC
Confidence 89999976543
No 17
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.53 E-value=1.6e-14 Score=124.41 Aligned_cols=139 Identities=10% Similarity=0.110 Sum_probs=99.6
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCCCC-CCcc--HHHHHHHHHHHHHHCCCeeeeeee
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEF-TGMK--RFDARTRVTEVLTEKGLYRGTVSH 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~~f-~G~~--~~~ar~~Iie~L~~~g~l~~~~~~ 68 (164)
..+..||..--.-|++.|.+.....++ =|. ..+.| .-.+ ..++-..+++.|.++|++...+.-
T Consensus 56 ~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi---~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iY~~~~~ 132 (524)
T 2x1l_A 56 TGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNI---SFDRFIRTSDADHYEASKAIWKRMADAGDIYLDAYK 132 (524)
T ss_dssp EEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC---CCSEEEETTSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCC---cCCCCeecCCHHHHHHHHHHHHHHHHCCCEEeeeee
Confidence 445567776666666766655443321 111 01111 1122 567788999999999999754321
Q ss_pred ee---------e---------cceec-CCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHH-hcC
Q psy953 69 AM---------V---------VPLCS-RSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWL-ENN 128 (164)
Q Consensus 69 ~~---------~---------~p~c~-R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl-~~~ 128 (164)
.. . .+.|+ |||.+++++.++|||++++++++++++.++++...+.|+..++.+.+|+ +++
T Consensus 133 v~~~~~~~t~l~~~ev~~g~~G~~c~~~~g~~v~~~~~~qwF~~l~~~~~~l~~~~~~~~~~i~p~~~~~~~~~~~~~~l 212 (524)
T 2x1l_A 133 GWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDARRNEIVSFVSGGL 212 (524)
T ss_dssp EEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEESHHHHHHHHHHHTTCC
T ss_pred eeccCccCccccHHHhccCCCCCccccccCCcceEEecCCeEeeHHHHHHHHHHHHHhCCCeeCCHHHHHHHHHHHHcCC
Confidence 10 0 02577 9999999999999999999999999999974344578999999999999 469
Q ss_pred CCcccc-----cCCCcccccC
Q psy953 129 REKKDR-----IGESQPFRER 144 (164)
Q Consensus 129 ~DWcIS-----wG~~iP~~~~ 144 (164)
+||||| ||+|+|++++
T Consensus 213 ~Dw~iSRqr~~WG~~iP~~~~ 233 (524)
T 2x1l_A 213 KDLSISRTTFDWGVPVPDHPD 233 (524)
T ss_dssp CCEECEESSCCSSCEETTEEE
T ss_pred cccceECCCCCcCccCCCCCC
Confidence 999997 9999997654
No 18
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.49 E-value=1.8e-14 Score=123.47 Aligned_cols=102 Identities=14% Similarity=0.182 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeee------------eec---ceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCC
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHA------------MVV---PLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGE 109 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~------------~~~---p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~ 109 (164)
..++-..+++.|.++|++...+.-. ..+ +.|+|||.+++.+.++|||++++++++++++.++++.
T Consensus 102 ~~~~~~~~~~~L~~~G~iY~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~wf~~l~~~~~~l~~~~~~~~ 181 (497)
T 2csx_A 102 HVKFVQKVFEECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNP 181 (497)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCEEecceeeccCcccCeEccHHHhccCCCCCCCCCCCeEEecCceEEEcHHHHHHHHHHHHhCC
Confidence 4577788999999999998653210 112 7899999999999999999999999999999998655
Q ss_pred cEEeCccchHHHHHHHh-cCCCcccc-------cCCCcccccCcc
Q psy953 110 LKIIPDHHTKTWYQWLE-NNREKKDR-------IGESQPFRERTL 146 (164)
Q Consensus 110 i~~~P~~~k~~~~~wl~-~~~DWcIS-------wG~~iP~~~~~~ 146 (164)
..+.|+..++.+.+|++ +++||||| ||+|+|+++.++
T Consensus 182 ~~~~p~~~~~~~~~~l~~~~~Dw~isR~~~~~~WG~~iP~~~~~~ 226 (497)
T 2csx_A 182 EFIQPDYRRNEIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHT 226 (497)
T ss_dssp TSBCSHHHHHHHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEE
T ss_pred CeeCcHHHHHHHHHHHhcCCccccccccCCCCCCceecCCCCCce
Confidence 55679999999999997 58999987 999999875554
No 19
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.48 E-value=5.5e-14 Score=122.12 Aligned_cols=138 Identities=13% Similarity=0.164 Sum_probs=101.5
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCCCC--CC-ccHHHHHHHHHHHHHHCCCeeeeeee
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEF--TG-MKRFDARTRVTEVLTEKGLYRGTVSH 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~~f--~G-~~~~~ar~~Iie~L~~~g~l~~~~~~ 68 (164)
..+..||..-...|.+.|+.+..+.++ =|. ..+.| .. ....++-..+++.|.++|++...+..
T Consensus 62 ~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi---~~d~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~ 138 (560)
T 3h99_A 62 CADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNI---SYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTIS 138 (560)
T ss_dssp EEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTC---CCSEEEESSSHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHcCC---CCCCceeCCCHHHHHHHHHHHHHHHHCCCEEEeeee
Confidence 445567777777777777765544432 011 01111 11 13346668899999999999854321
Q ss_pred -------------------------------------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHH
Q psy953 69 -------------------------------------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAV 105 (164)
Q Consensus 69 -------------------------------------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i 105 (164)
.+..|+|+|||++++++.++|||++++++++.+++.+
T Consensus 139 ~~~~~~~~~~l~~~~v~g~cp~c~~~~~~gd~ce~cg~~~~~~~l~~~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~ 218 (560)
T 3h99_A 139 QLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWT 218 (560)
T ss_dssp EEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEEEEEEEEEECGGGGHHHHHHHH
T ss_pred EeecCccCceecchhcCCCCCCCCCcccccchhhhccccCChhhhcCCccccCCCCceEEecceEEEEHHHHHHHHHHHH
Confidence 1235889999999999999999999999999999999
Q ss_pred hCCCcEEeCccchHHHHHHHh-cCCCcccc-----cCCCcccccCcc
Q psy953 106 KTGELKIIPDHHTKTWYQWLE-NNREKKDR-----IGESQPFRERTL 146 (164)
Q Consensus 106 ~~~~i~~~P~~~k~~~~~wl~-~~~DWcIS-----wG~~iP~~~~~~ 146 (164)
+++ ++|+..++.+.+||+ +++||||| ||+|+|.+++++
T Consensus 219 ~~~---~~~~~~~~~~~~~l~~~l~D~~IsR~~~~WG~~iP~~~~~v 262 (560)
T 3h99_A 219 RSG---ALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKY 262 (560)
T ss_dssp HTS---CSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEE
T ss_pred HhC---CCCHHHHHHHHHHHhcCCCCCCccccCCcCCeeCCCCCCce
Confidence 842 368888999999999 79999999 899999876653
No 20
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase, phosphoprotein, editing domain, nucleotide-binding, hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Probab=99.48 E-value=5.2e-14 Score=111.39 Aligned_cols=63 Identities=17% Similarity=0.312 Sum_probs=54.9
Q ss_pred CeEeCCCCCHHHHH----------HHHHcCCC--------ccceeCC---------------------------------
Q psy953 1 AVKISPGHDHNDYE----------VAQRLNLP--------LITVFNE--------------------------------- 29 (164)
Q Consensus 1 ~V~~~PaH~~~D~~----------~~~~~~L~--------~~~~id~--------------------------------- 29 (164)
|||+|||||++||+ ||++|||| ++.+|+.
T Consensus 131 ~V~~vPaHd~~D~~~~~~l~~~~~fa~kygL~~~~~~~~~~~~vI~~~~~g~~~~~~~~~~~~i~~~~d~~~l~~~~~~~ 210 (252)
T 2wfd_A 131 VVTSVPSDSPDDIAALRDLKKKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNLSAVTICDELKIQSQNDREKLAEAKEKI 210 (252)
T ss_dssp SEEECTTTCHHHHHHHHHHHHCSHHHHTTTCCGGGTTTCCCCCCEEBTTTBSSHHHHHHHHTTCCSTTCHHHHHHHHHHH
T ss_pred eEEEcCCCCHHHHHHHhhhccchhHHHHcCCCchhccccCceeEEecCcccccchhhhhhhccccCcchhhhhhhhhhhh
Confidence 79999999999999 68999998 5666532
Q ss_pred ------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeee
Q psy953 30 ------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGT 65 (164)
Q Consensus 30 ------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~ 65 (164)
+|+|+ ++.|+|+++++|+++|++.|+++|++.+.
T Consensus 211 y~~~~~~G~~~--~~~~~Gl~v~eA~~~Ii~~L~~~g~~~~~ 250 (252)
T 2wfd_A 211 YLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDALIY 250 (252)
T ss_dssp HHHHHHHCEEC--STTSTTCBHHHHHHHHHHHHHHTTSEEEE
T ss_pred ccccccCceEe--eeccCCeEHHHHHHHHHHHHHHCCCCccc
Confidence 48887 68999999999999999999999998764
No 21
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.46 E-value=6.2e-14 Score=122.03 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=104.1
Q ss_pred eEeCCCCCHHHHHHHHHcCCCccceeCCCc--------eEecCCCCC--CC-ccHHHHHHHHHHHHHHCCCeeeeeeeee
Q psy953 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEG--------VIIGDYGEF--TG-MKRFDARTRVTEVLTEKGLYRGTVSHAM 70 (164)
Q Consensus 2 V~~~PaH~~~D~~~~~~~~L~~~~~id~~G--------~~~~~~~~f--~G-~~~~~ar~~Iie~L~~~g~l~~~~~~~~ 70 (164)
|..+..||..-...|++.|+.+....++.- .|.-..+.| .. ....+.-+.+++.|.++|++...+.-..
T Consensus 69 ~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~~~lgi~~D~~~~t~~~~~~~~v~~~~~~L~~~G~iy~~~~~~~ 148 (564)
T 3kfl_A 69 MTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYEGW 148 (564)
T ss_dssp EEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCSEEEETTSHHHHHHHHHHHHHHHHHTCEEEEEEEEE
T ss_pred ecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHHHHHHHCCCEEEeeeeEE
Confidence 445667888777888888887655544210 000001112 11 1245678899999999999976532100
Q ss_pred --------------ec------cee---cCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHh-
Q psy953 71 --------------VV------PLC---SRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLE- 126 (164)
Q Consensus 71 --------------~~------p~c---~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~- 126 (164)
.. ..| .+||++++.+.++|||++++++++++++.++++...+.|+..++++.+||+
T Consensus 149 y~~~~~~~l~~~~~~~~~~~~g~~c~~~~~~g~~~~~~~~~~~f~~l~~~~~~l~~~~~~~~~~i~P~~~~~~~~~wl~~ 228 (564)
T 3kfl_A 149 YSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYFHDHPNCIVPEFRRREVIKTVEK 228 (564)
T ss_dssp EETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHHHHCTTSEESHHHHHHHHHHHHH
T ss_pred ecCCcCCCCCHHHhccCcCCCCCEeccccCCCCccEEEecceeEEEHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHhC
Confidence 00 234 478999999999999999999999999999865566889999999999998
Q ss_pred cCCCcccc--------cCCCcccccCc
Q psy953 127 NNREKKDR--------IGESQPFRERT 145 (164)
Q Consensus 127 ~~~DWcIS--------wG~~iP~~~~~ 145 (164)
+++||||| ||+|||.++++
T Consensus 229 gl~D~~ISR~~~~~~~WGipiP~~~~~ 255 (564)
T 3kfl_A 229 GLFDLSISRKRESVMNWSIPVPGDERH 255 (564)
T ss_dssp CCCCEECEEEGGGGTTCSCEETTEEEE
T ss_pred CCCCccccCcCCCCCCCCeecCCCCCC
Confidence 69999985 89999987654
No 22
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase; 2.60A {Giardia intestinalis}
Probab=99.04 E-value=2.7e-10 Score=91.68 Aligned_cols=64 Identities=16% Similarity=0.305 Sum_probs=53.5
Q ss_pred CeEeCCCCCHHHHHHHHH-----------cCC---------CccceeCC-------------------------------
Q psy953 1 AVKISPGHDHNDYEVAQR-----------LNL---------PLITVFNE------------------------------- 29 (164)
Q Consensus 1 ~V~~~PaH~~~D~~~~~~-----------~~L---------~~~~~id~------------------------------- 29 (164)
+||+|||||++||.++++ ||| +++.+|+-
T Consensus 183 iVh~aPaHg~dDy~~~~d~Lk~k~~~~~Kygi~~e~v~~~~e~ipvI~~~g~G~~~A~~~ve~~~I~sq~D~~kLeeA~~ 262 (311)
T 3pz6_A 183 IVTSVPSDAPDDYACYKDILENRNGIAEKYGVDVGLMLEPYSPLPIIEIPDIGTLSAVRLCEESNVSSLHDRAKLTQIKE 262 (311)
T ss_dssp EEEECTTTCHHHHHHHHHHHTTGGGHHHHTTCCHHHHTTTSCCCCCEEBTTTBSSHHHHHHHHTTC----CHHHHHHHHH
T ss_pred eEEeCCCCCHHHHHHHHHHhhccHHHHHHcCCchHHhccCCCeEEEEecCCCCCccHHHHHHHhCCCCcchHHHHHHHHH
Confidence 699999999999995554 774 77777741
Q ss_pred --------CceEecCCCCCCCccHHHHHHHHHHHHHHCCCeeeee
Q psy953 30 --------EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRGTV 66 (164)
Q Consensus 30 --------~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~~~~ 66 (164)
+|+|. ++.|+|+++.+|+++|.+.|.++|.+....
T Consensus 263 ~~Y~~ef~~Gvm~--~g~~~G~~V~eAk~~i~~~L~~~g~a~~yy 305 (311)
T 3pz6_A 263 ICYTKGFYTGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQCIVYS 305 (311)
T ss_dssp HHHHHHHHHCEEC--SSTTTTSBHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhccCCCCEEe--eeccCCeEHHHHHHHHHHHHHHCCCceEEc
Confidence 47776 689999999999999999999999988653
No 23
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=98.13 E-value=1.8e-06 Score=78.61 Aligned_cols=124 Identities=17% Similarity=0.191 Sum_probs=72.9
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCCC-----------ceEecCCCCCCCc--cHHHHHHHHHHHHHHCCCeeeeeee-
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNEE-----------GVIIGDYGEFTGM--KRFDARTRVTEVLTEKGLYRGTVSH- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~~-----------G~~~~~~~~f~G~--~~~~ar~~Iie~L~~~g~l~~~~~~- 68 (164)
+....||.---..|.+.|+++....++. |.-.+-...|.-+ ...++...++..|.++|+++..+..
T Consensus 97 ~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~~LGis~Dw~~~~~T~d~~~~~~v~~~f~~L~ekGliY~~~~~v 176 (880)
T 4arc_A 97 IGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAV 176 (880)
T ss_dssp CEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTCCCCGGGCEETTSHHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred cCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCCCCCEEcCCHHHHHHHHHHHHHHHHCCCEEEeceeE
Confidence 4455677666667777777654433221 1111000111112 3356788999999999999876542
Q ss_pred -------------eeecceecCCCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhcC
Q psy953 69 -------------AMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENN 128 (164)
Q Consensus 69 -------------~~~~p~c~R~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~~ 128 (164)
+...+.|+|||.+++.+-.+|||++++++++++++.++ .+.-.|+..+++..+||...
T Consensus 177 ~wcp~~~t~La~~ev~~g~~~~~g~~ve~~~~~~~f~~i~~y~~~Ll~~l~--~~~~wp~~v~~~~~~wig~s 247 (880)
T 4arc_A 177 NWCPNDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLD--KLDHWPDTVKTMQRNWIGRS 247 (880)
T ss_dssp ------------------------------CEEEEEECGGGGHHHHHHHGG--GCTTSCHHHHHHHHHHHCEE
T ss_pred eecCCcCCEecchhhhcCcCcCCCCccEEEEccceEEeechhHHHHHHHHh--hcccccHHHHHHHHhhhccc
Confidence 11247899999999999999999999999999999997 34336999999999999653
No 24
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.80 E-value=3.7e-05 Score=70.07 Aligned_cols=122 Identities=18% Similarity=0.183 Sum_probs=85.8
Q ss_pred EeCCCCCHHHHHHHHHcCCCccceeCC-----------CceEecCCCCCCCc--cHHHHHHHHHHHHHHCCCeeeeeee-
Q psy953 3 KISPGHDHNDYEVAQRLNLPLITVFNE-----------EGVIIGDYGEFTGM--KRFDARTRVTEVLTEKGLYRGTVSH- 68 (164)
Q Consensus 3 ~~~PaH~~~D~~~~~~~~L~~~~~id~-----------~G~~~~~~~~f~G~--~~~~ar~~Iie~L~~~g~l~~~~~~- 68 (164)
+....||..--..|.+.|+++....++ =|...+-...|.-+ ...++...++..|.++|++......
T Consensus 77 ~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~~LGi~~Dw~~~~~T~d~~~~~~v~~~f~~L~~kGliY~~~~~v 156 (878)
T 2v0c_A 77 MGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLV 156 (878)
T ss_dssp CCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCCCGGGCCBTTSHHHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred cccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCccCcCCCeecCCHHHHHHHHHHHHHHHHCCCEEEcceeE
Confidence 445567776666777777765443332 12111100122122 2346678999999999999865432
Q ss_pred -------------eeecceecC-CCCeeEEcccCeeeeeccHHHHHHHHHHhCCCcEEeCccchHHHHHHHhc
Q psy953 69 -------------AMVVPLCSR-SKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN 127 (164)
Q Consensus 69 -------------~~~~p~c~R-~g~~i~~~~~~QWFi~~~~~~~~~l~~i~~~~i~~~P~~~k~~~~~wl~~ 127 (164)
+.....|+| ||.+++.+..+|||++++++++++++.++ ... .|+..++...+||..
T Consensus 157 ~w~p~~~t~La~~ev~~g~~~~~~~~~~~~~~~~~~f~~l~~~~~~L~~~l~--~~~-~p~~~~~~~~~wi~~ 226 (878)
T 2v0c_A 157 NWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLE--GLN-WPEKVKAMQRAWIGR 226 (878)
T ss_dssp EEETTTTEEECGGGEETTEESSCTTCBCEEEEEEEEEECGGGGHHHHHHTTT--TCB-SCHHHHHHHHHHHCE
T ss_pred EEeCCCCCCcCHHHHhcCCCcccCCCceEEEecceeeEecchhHHHHHHHhh--hcC-CCHHHHHHHHHHhcc
Confidence 122578999 99999999999999999999999999997 455 799999999999963
No 25
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=34.11 E-value=70 Score=20.62 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=23.8
Q ss_pred HHHHcC---CCccceeCCCceEecCCCCCCCc-cHHHHHHHHHHHHH
Q psy953 15 VAQRLN---LPLITVFNEEGVIIGDYGEFTGM-KRFDARTRVTEVLT 57 (164)
Q Consensus 15 ~~~~~~---L~~~~~id~~G~~~~~~~~f~G~-~~~~ar~~Iie~L~ 57 (164)
++++++ +|..-++|.+|++... +.|. ...+.-+.+.+.|+
T Consensus 103 ~~~~~~i~~~P~~~lid~~G~i~~~---~~g~~~~~~~l~~l~~~l~ 146 (148)
T 3hcz_A 103 FKITYDIYATPVLYVLDKNKVIIAK---RIGYENLDDFLVQYEKSLK 146 (148)
T ss_dssp HHHHHCCCSSCEEEEECTTCBEEEE---SCCGGGHHHHHHHHHHHHH
T ss_pred HHHhcCcCCCCEEEEECCCCcEEEe---cCCHHHHHHHHHHHHHHhc
Confidence 566665 4777889999988743 2333 33444455555544
No 26
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=33.93 E-value=33 Score=23.27 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=26.4
Q ss_pred HHHHHHHcCC-------CccceeCCCceEecCCCCCCC-ccHHHHHHHHHHHHHH
Q psy953 12 DYEVAQRLNL-------PLITVFNEEGVIIGDYGEFTG-MKRFDARTRVTEVLTE 58 (164)
Q Consensus 12 D~~~~~~~~L-------~~~~~id~~G~~~~~~~~f~G-~~~~~ar~~Iie~L~~ 58 (164)
+-.++++|++ |..-+||.+|++... +.| +...+.-+.+++.|++
T Consensus 95 ~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~---~~g~~~~~~~~~~il~~l~~ 146 (161)
T 3drn_A 95 DKKIRELYGAKGFILPARITFVIDKKGIIRHI---YNSQMNPANHVNEALKALKQ 146 (161)
T ss_dssp TSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE---EECSSCTTHHHHHHHHHHHH
T ss_pred cHHHHHHcCCCCcCcccceEEEECCCCEEEEE---EecCCCCCcCHHHHHHHHHH
Confidence 3467777764 567789999988632 344 3333444555555554
No 27
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=28.89 E-value=57 Score=29.04 Aligned_cols=34 Identities=15% Similarity=-0.148 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCe
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDV 81 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~ 81 (164)
..++...++..|.++|++.+.+.. ++.|.+|+++
T Consensus 159 ~~~~v~~~f~~L~~~Gliy~~~~~---v~~~~~~~t~ 192 (810)
T 1wkb_A 159 FSKFIEWQFWKLKEKGYIVKGAHR---VRWDPVVGTP 192 (810)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEE---EEEETTTTEE
T ss_pred HHHHHHHHHHHHHHCCCEEECCee---eeccCCcCCC
Confidence 346678999999999999876543 6889998875
No 28
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=28.03 E-value=76 Score=20.72 Aligned_cols=22 Identities=9% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHcCC---CccceeCCCceEec
Q psy953 14 EVAQRLNL---PLITVFNEEGVIIG 35 (164)
Q Consensus 14 ~~~~~~~L---~~~~~id~~G~~~~ 35 (164)
.+++++++ |..-+||.+|++..
T Consensus 96 ~~~~~~~v~~~P~~~lid~~G~i~~ 120 (152)
T 3gl3_A 96 QTPRLYGVKGMPTSFLIDRNGKVLL 120 (152)
T ss_dssp HHHHHTTCCSSSEEEEECTTSBEEE
T ss_pred hhHHHcCCCCCCeEEEECCCCCEEE
Confidence 56677754 66778899998864
No 29
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae}
Probab=27.05 E-value=18 Score=29.96 Aligned_cols=18 Identities=28% Similarity=0.768 Sum_probs=14.3
Q ss_pred CCCeeEEcccCeeeeecc
Q psy953 78 SKDVVEPLLKPQWYVRTG 95 (164)
Q Consensus 78 ~g~~i~~~~~~QWFi~~~ 95 (164)
-+..++.+++||||.+-+
T Consensus 98 knkKvV~iiSPQWF~k~G 115 (407)
T 3bma_A 98 ENKQVVYVISPQWFSKNG 115 (407)
T ss_dssp TTCEEEEECCGGGCCSSC
T ss_pred cCCeEEEEECccccCCCC
Confidence 566788999999998543
No 30
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=26.47 E-value=61 Score=21.71 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=20.7
Q ss_pred CCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHH
Q psy953 21 LPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 21 L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~ 58 (164)
.|..-+||.+|++.... .|....+.-+.+++.|++
T Consensus 125 ~p~~~lid~~G~i~~~~---~~~~~~~~~~~il~~l~~ 159 (163)
T 3gkn_A 125 ERSTFLLSPEGQVVQAW---RKVKVAGHADAVLAALKA 159 (163)
T ss_dssp CCEEEEECTTSCEEEEE---CSCCSTTHHHHHHHHHHH
T ss_pred ceEEEEECCCCeEEEEE---cCCCcccCHHHHHHHHHH
Confidence 35577888999886422 444443444556666654
No 31
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=26.31 E-value=92 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=17.3
Q ss_pred HHHHHcC---CCccceeCCCceEec
Q psy953 14 EVAQRLN---LPLITVFNEEGVIIG 35 (164)
Q Consensus 14 ~~~~~~~---L~~~~~id~~G~~~~ 35 (164)
.++++++ +|..-++|.+|++..
T Consensus 99 ~~~~~~~v~~~P~~~lid~~G~i~~ 123 (152)
T 2lja_A 99 TFMDAYLINGIPRFILLDRDGKIIS 123 (152)
T ss_dssp HHHHHTTCCSSCCEEEECTTSCEEE
T ss_pred hHHHHcCcCCCCEEEEECCCCeEEE
Confidence 6777775 577888999999874
No 32
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=26.11 E-value=76 Score=21.92 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=27.2
Q ss_pred HHHHHHcCC---CccceeCCCceEecCCC---C---CCCc-cHHHHHHHHHHHHHHC
Q psy953 13 YEVAQRLNL---PLITVFNEEGVIIGDYG---E---FTGM-KRFDARTRVTEVLTEK 59 (164)
Q Consensus 13 ~~~~~~~~L---~~~~~id~~G~~~~~~~---~---f~G~-~~~~ar~~Iie~L~~~ 59 (164)
-.+++++++ |..-+||.+|++..... . +.|. +..+..+.|-+.|.+.
T Consensus 120 ~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~~~l~~~i~~ll~~~ 176 (196)
T 2ywi_A 120 QEVAKAYDAACTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTGESIRAALDALLEGR 176 (196)
T ss_dssp CHHHHHHTCCEESEEEEEETTCBEEEEECSSSCCTTTCCCCCCHHHHHHHHHHHHTC
T ss_pred hHHHHHhCCCCCCeEEEEcCCCeEEEccccCcccccccCccCHHHHHHHHHHHHcCC
Confidence 356677765 56677889998863210 0 4454 4455555555555443
No 33
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=25.64 E-value=47 Score=20.44 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=17.4
Q ss_pred CCCCccHHHHHHHHHHHHHHC
Q psy953 39 EFTGMKRFDARTRVTEVLTEK 59 (164)
Q Consensus 39 ~f~G~~~~~ar~~Iie~L~~~ 59 (164)
++.|+++.||...+.+.|.+.
T Consensus 4 DLHGl~v~eA~~~l~~~l~~~ 24 (82)
T 3fau_A 4 DLHGLHVDEALEHLMRVLEKK 24 (82)
T ss_dssp ECTTSCHHHHHHHHHHHHHHH
T ss_pred ECCCCcHHHHHHHHHHHHHHH
Confidence 367999999999988888763
No 34
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=25.58 E-value=1.1e+02 Score=21.91 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=16.7
Q ss_pred HHHHHHcCC---CccceeCCCceEe
Q psy953 13 YEVAQRLNL---PLITVFNEEGVII 34 (164)
Q Consensus 13 ~~~~~~~~L---~~~~~id~~G~~~ 34 (164)
-.++++|++ |..-+||.+|++.
T Consensus 133 ~~~~~~~~v~~~P~~~liD~~G~i~ 157 (218)
T 3u5r_E 133 QSVAKAYGAACTPDFFLYDRERRLV 157 (218)
T ss_dssp CHHHHHHTCCEESEEEEECTTCBEE
T ss_pred cHHHHHcCCCCCCeEEEECCCCcEE
Confidence 357777776 6677899999886
No 35
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=25.24 E-value=1.1e+02 Score=21.13 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHcC---CCccceeCCC-ceEecCCCCCCCccHHHHHHHHHHHHHHCCCee
Q psy953 8 HDHNDYEVAQRLN---LPLITVFNEE-GVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYR 63 (164)
Q Consensus 8 H~~~D~~~~~~~~---L~~~~~id~~-G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~l~ 63 (164)
.+.++..++++|+ .|.+.++|.+ |..... +.|++..+-.+.+-+.|.+.+-..
T Consensus 86 ~~~~~~~l~~~y~v~~~P~~~fld~~~G~~l~~---~~g~~~~~fl~~L~~~l~~~~~~~ 142 (153)
T 2dlx_A 86 DSEEGQRYIQFYKLGDFPYVSILDPRTGQKLVE---WHQLDVSSFLDQVTGFLGEHGQLD 142 (153)
T ss_dssp SSHHHHHHHHHHTCCSSSEEEEECTTTCCCCEE---ESSCCHHHHHHHHHHHHHHTCSCS
T ss_pred CCHhHHHHHHHcCCCCCCEEEEEeCCCCcEeee---cCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4567778888886 5888899987 743322 356777777777777777766544
No 36
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=25.21 E-value=97 Score=21.43 Aligned_cols=34 Identities=12% Similarity=0.058 Sum_probs=18.4
Q ss_pred CccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHH
Q psy953 22 PLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 22 ~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~ 58 (164)
|..-+||.+|++.... .|......-+.+++.|++
T Consensus 142 p~~~lID~~G~I~~~~---~~~~~~~~~~~il~~l~~ 175 (179)
T 3ixr_A 142 RSTFLIGPTHRIVEAW---RQVKVPGHAEEVLNKLKA 175 (179)
T ss_dssp CEEEEECTTSBEEEEE---CSCCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCEEEEEE---cCCCCCCCHHHHHHHHHH
Confidence 3367788888886432 333333333455555543
No 37
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=24.43 E-value=62 Score=29.32 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee-----EEc--ccCeeeeecc
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV-----EPL--LKPQWYVRTG 95 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i-----~~~--~~~QWFi~~~ 95 (164)
..++...++..|.++|++++.... ++.|.+|++.+ ++. ..+.|++++.
T Consensus 149 ~~~~v~~~F~~L~~kGliYrg~~~---v~wcp~~~T~Lsd~EV~~~e~~g~~~~v~f~ 203 (862)
T 1gax_A 149 RSRAVRYAFSRYYHEGLAYRAPRL---VNWCPRCETTLSDLEVETEPTPGKLYTLRYE 203 (862)
T ss_dssp HHHHHHHHHHHHHTTSSEEEECCE---EEEETTTTEEECGGGEEECCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHCCCEEecccc---cccCCCcCccccccccccccccceEEEEEEE
Confidence 457889999999999999976544 78999999864 222 2456887774
No 38
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=24.23 E-value=50 Score=21.87 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHcC-----CCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHH
Q psy953 12 DYEVAQRLN-----LPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 12 D~~~~~~~~-----L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~ 58 (164)
.-.++++++ +|..-+||.+|++.. .+.|..-.+.-.+.++.|.+
T Consensus 92 ~~~~~~~~~~~v~~~P~~~lid~~G~i~~---~~~g~~~~~~l~~~l~~l~~ 140 (151)
T 3raz_A 92 SRNFMKTYGNTVGVLPFTVVEAPKCGYRQ---TITGEVNEKSLTDAVKLAHS 140 (151)
T ss_dssp HHHHHHTTTCCSCCSSEEEEEETTTTEEE---ECCSCCCHHHHHHHHHHHHT
T ss_pred hHHHHHHhCCccCCCCEEEEECCCCcEEE---EECCCCCHHHHHHHHHHHHH
Confidence 345666666 566778899998763 24454333444444555544
No 39
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=24.03 E-value=51 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.7
Q ss_pred CCCCccHHHHHHHHHHHHHH
Q psy953 39 EFTGMKRFDARTRVTEVLTE 58 (164)
Q Consensus 39 ~f~G~~~~~ar~~Iie~L~~ 58 (164)
++.|+++.||...+.++|.+
T Consensus 12 DLHGl~v~eA~~~L~~~L~~ 31 (96)
T 2d9i_A 12 DLHGLHVDEALEHLMRVLEK 31 (96)
T ss_dssp ECTTSCHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999888875
No 40
>1o22_A Orphan protein TM0875; structural genomics, joint center for struct genomics, JCSG, protein structure initiative, PSI, unknown; 2.00A {Thermotoga maritima} SCOP: d.238.1.1
Probab=23.83 E-value=25 Score=24.43 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.1
Q ss_pred CCccHHHHHHHHHHHHHHCCCee
Q psy953 41 TGMKRFDARTRVTEVLTEKGLYR 63 (164)
Q Consensus 41 ~G~~~~~ar~~Iie~L~~~g~l~ 63 (164)
.|.......+++.+.|.+-|.-+
T Consensus 26 k~k~~~~le~k~~ei~~etgisl 48 (170)
T 1o22_A 26 KGKEFGILEKKMKEIFNETGVSL 48 (170)
T ss_dssp TTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cCcchhHHHHHHHHHHHhcCcee
Confidence 46667778889999999988754
No 41
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.78 E-value=1.2e+02 Score=20.46 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=24.7
Q ss_pred HHHHHHHHHCCCeeeeee------ee-------eecceecCCCCeeEE
Q psy953 50 TRVTEVLTEKGLYRGTVS------HA-------MVVPLCSRSKDVVEP 84 (164)
Q Consensus 50 ~~Iie~L~~~g~l~~~~~------~~-------~~~p~c~R~g~~i~~ 84 (164)
-..++.|.+.|++.+... |. |-.-+|.+||..++.
T Consensus 52 YR~L~~L~e~Glv~~~~~~~g~~~Y~~~~~~~~H~HliC~~Cg~v~~~ 99 (139)
T 3mwm_A 52 YRTLQSLADAGEVDVLRTAEGESVYRRCSTGDHHHHLVCRACGKAVEV 99 (139)
T ss_dssp HHHHHHHHHTTSSEEEECTTSCEEEECCSCSSCCEEEEETTTCCEEEE
T ss_pred HHHHHHHHHCCCEEEEEcCCCceEEEECCCCCCccEEEECCCCCEeec
Confidence 467889999999865432 32 333679999987765
No 42
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=23.28 E-value=70 Score=28.61 Aligned_cols=35 Identities=20% Similarity=0.270 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCe
Q psy953 44 KRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDV 81 (164)
Q Consensus 44 ~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~ 81 (164)
...++...++..|.++|++.+.+.. +..|.+|++.
T Consensus 153 ~~~~~v~~~f~~L~~~Gliy~~~~~---v~wcp~~~t~ 187 (821)
T 1ile_A 153 TYIESIWWSLKNLFDRGLLYRDHKV---VPYCPRCGTP 187 (821)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEECCE---EEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHcCCeeecCcc---eEecCCCCCc
Confidence 3456788999999999999987544 6788888876
No 43
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=22.91 E-value=1.1e+02 Score=19.98 Aligned_cols=41 Identities=15% Similarity=0.445 Sum_probs=25.6
Q ss_pred HHHHHHHcCC---CccceeCCCceEecCCCCCCCccHHHHHHHHHHHHH
Q psy953 12 DYEVAQRLNL---PLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLT 57 (164)
Q Consensus 12 D~~~~~~~~L---~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~ 57 (164)
+..++++|++ |..-+||.+|++.... .+..+..+.|-+.|+
T Consensus 105 ~~~~~~~~~v~~~P~~~lid~~G~i~~~~-----~~~~~l~~~l~~ll~ 148 (150)
T 3fw2_A 105 NSEVAKQYSIYKIPANILLSSDGKILAKN-----LRGEELKKKIENIVE 148 (150)
T ss_dssp GCHHHHHTTCCSSSEEEEECTTSBEEEES-----CCHHHHHHHHHHHHH
T ss_pred chHHHHHcCCCccCeEEEECCCCEEEEcc-----CCHHHHHHHHHHHHh
Confidence 3467777764 6677889999987432 244455555554444
No 44
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=22.63 E-value=1.2e+02 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHcC---CCccceeCCCceEec
Q psy953 11 NDYEVAQRLN---LPLITVFNEEGVIIG 35 (164)
Q Consensus 11 ~D~~~~~~~~---L~~~~~id~~G~~~~ 35 (164)
.+-.++++|+ +|.+-++|.+|+...
T Consensus 104 ~~~~l~~~~~v~~~Pt~~~~d~~G~~~~ 131 (154)
T 2ju5_A 104 KNQELKAQYKVTGFPELVFIDAEGKQLA 131 (154)
T ss_dssp HHHHHHHHTTCCSSSEEEEECTTCCEEE
T ss_pred hHHHHHHHcCCCCCCEEEEEcCCCCEEE
Confidence 3457888886 477888999998874
No 45
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=22.50 E-value=93 Score=19.98 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=18.6
Q ss_pred HHHHHHHcCC---CccceeCCCceEecC
Q psy953 12 DYEVAQRLNL---PLITVFNEEGVIIGD 36 (164)
Q Consensus 12 D~~~~~~~~L---~~~~~id~~G~~~~~ 36 (164)
+..+++++++ |..-++|.+|++...
T Consensus 103 ~~~~~~~~~v~~~P~~~lid~~G~i~~~ 130 (148)
T 3fkf_A 103 SSETAKQYAILTLPTNILLSPTGKILAR 130 (148)
T ss_dssp GCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred chHHHHhcCCCCcCEEEEECCCCeEEEe
Confidence 4577888865 667788999988743
No 46
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=22.16 E-value=90 Score=17.35 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=17.7
Q ss_pred cCCCCCCCccHHHHHHHHHHH
Q psy953 35 GDYGEFTGMKRFDARTRVTEV 55 (164)
Q Consensus 35 ~~~~~f~G~~~~~ar~~Iie~ 55 (164)
...+++.|.+..+|+..|..+
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e 28 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQ 28 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHH
T ss_pred CcChhhcCCcHHHHHHHHHHH
Confidence 357899999999999988765
No 47
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=21.16 E-value=12 Score=28.55 Aligned_cols=64 Identities=9% Similarity=0.086 Sum_probs=25.6
Q ss_pred HHHHHHcCC---------CccceeCCCceEecCC--CCCCCccHHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCe
Q psy953 13 YEVAQRLNL---------PLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDV 81 (164)
Q Consensus 13 ~~~~~~~~L---------~~~~~id~~G~~~~~~--~~f~G~~~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~ 81 (164)
-.+++.||+ |..-+||.+|++.... +.-.|..+.++.+.| +.|+. .. ....--|..|+-|..
T Consensus 165 ~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~L-~alq~---~~---~~~~~cp~~W~~g~~ 237 (254)
T 3tjj_A 165 HQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLV-QAFQY---TD---KHGEVAPAGWKPGSE 237 (254)
T ss_dssp SHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHHH-HHHHH---HH---HHC------------
T ss_pred HHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHHH-Hhhcc---cc---ccCccccCCCCCCCc
Confidence 467888876 5567899999886321 122344455443332 22321 11 112235888998876
Q ss_pred eE
Q psy953 82 VE 83 (164)
Q Consensus 82 i~ 83 (164)
++
T Consensus 238 ~~ 239 (254)
T 3tjj_A 238 TI 239 (254)
T ss_dssp --
T ss_pred ee
Confidence 54
No 48
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=20.53 E-value=83 Score=20.71 Aligned_cols=41 Identities=10% Similarity=0.192 Sum_probs=23.4
Q ss_pred HHHHHcC---CCccceeCCCceEecCCCCCCCc-cHHHHHHHHHHHHH
Q psy953 14 EVAQRLN---LPLITVFNEEGVIIGDYGEFTGM-KRFDARTRVTEVLT 57 (164)
Q Consensus 14 ~~~~~~~---L~~~~~id~~G~~~~~~~~f~G~-~~~~ar~~Iie~L~ 57 (164)
.++++|+ +|..-+||.+|++... +.|. +..+..+.|-+.|.
T Consensus 108 ~~~~~~~v~~~P~~~lid~~G~i~~~---~~g~~~~~~l~~~i~~ll~ 152 (158)
T 3eyt_A 108 RTMAAYQMRGTPSLLLIDKAGDLRAH---HFGDVSELLLGAEIATLLG 152 (158)
T ss_dssp HHHHHTTCCSSSEEEEECTTSEEEEE---EESCCCHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCEEEEECCCCCEEEE---EeCCCCHHHHHHHHHHHhc
Confidence 3566665 4667788899987632 2233 34444555544443
No 49
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=20.37 E-value=1.3e+02 Score=23.13 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHcCCCccceeCCCceEecCCCCCCCccHHHHHHHHHHHHHHCCC
Q psy953 6 PGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGL 61 (164)
Q Consensus 6 PaH~~~D~~~~~~~~L~~~~~id~~G~~~~~~~~f~G~~~~~ar~~Iie~L~~~g~ 61 (164)
+.++......+.+.++|++.+-+..+ .....+-+.+..++-..+.+.|.++|.
T Consensus 135 ~~~~~~~~~~l~~~~iPvV~i~~~~~---~~~~~~V~~D~~~~~~~a~~~L~~~G~ 187 (355)
T 3e3m_A 135 DGHTEQTIRLLQRASIPIVEIWEKPA---HPIGHTVGFSNERAAYDMTNALLARGF 187 (355)
T ss_dssp SCCCHHHHHHHHHCCSCEEEESSCCS---SCSSEEEECCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHhCCCCEEEECCccC---CCCCCEEEeChHHHHHHHHHHHHHCCC
Confidence 34455556777888999886532211 011124567788888999999999875
No 50
>1dtd_B Metallocarboxypeptidase inhibitor; carboxypeptidase A2, leech carboxypeptidase inhibitor, hydrolase/hydrolase inhibitor complex; HET: GLU; 1.65A {Hirudo medicinalis} SCOP: g.30.1.1 PDB: 1dtv_A 1zfi_A 1zfl_A 2abz_C
Probab=20.27 E-value=26 Score=20.14 Aligned_cols=6 Identities=67% Similarity=1.736 Sum_probs=4.0
Q ss_pred eeecCC
Q psy953 155 WSPYSN 160 (164)
Q Consensus 155 ~~~~~~ 160 (164)
|||||.
T Consensus 45 wvpyst 50 (61)
T 1dtd_B 45 WVPYST 50 (61)
T ss_dssp CEEETT
T ss_pred EEeccC
Confidence 777763
No 51
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=20.25 E-value=65 Score=29.49 Aligned_cols=35 Identities=14% Similarity=-0.126 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHCCCeeeeeeeeeecceecCCCCee
Q psy953 45 RFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVV 82 (164)
Q Consensus 45 ~~~ar~~Iie~L~~~g~l~~~~~~~~~~p~c~R~g~~i 82 (164)
..++...++..|.++|++.+.... ++.|.+|++++
T Consensus 159 y~~~v~~~F~~L~~kGliyr~~~~---v~wcp~~~T~L 193 (967)
T 1wz2_A 159 FSKFIEWQFWKLKEKGYIVKGAHR---VRWDPVVGTPL 193 (967)
T ss_dssp HHHHHHHHHHHTTTTTCEEECCCC---CEECTTTSCBC
T ss_pred HHHHHHHHHHHHHHCCCEEEeceE---ecccCCCCCCc
Confidence 457788999999999999876544 78999999863
No 52
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=20.12 E-value=74 Score=21.00 Aligned_cols=40 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHcCC---CccceeCCCceEecCCCCCCCc-cHHHHHHHHHHHHH
Q psy953 15 VAQRLNL---PLITVFNEEGVIIGDYGEFTGM-KRFDARTRVTEVLT 57 (164)
Q Consensus 15 ~~~~~~L---~~~~~id~~G~~~~~~~~f~G~-~~~~ar~~Iie~L~ 57 (164)
++++|++ |..-+||.+|++... +.|. +..+..+.|-+.|.
T Consensus 112 ~~~~~~v~~~P~~~lid~~G~i~~~---~~g~~~~~~l~~~i~~ll~ 155 (160)
T 3lor_A 112 TMKKYRLEGTPSIILADRKGRIRQV---QFGQVDDFVLGLLLGSLLS 155 (160)
T ss_dssp HHHHTTCCSSSEEEEECTTSBEEEE---EESCCCHHHHHHHHHHHHT
T ss_pred HHHhcccCccceEEEECCCCcEEEE---ecCcCCHHHHHHHHHHHHh
Confidence 5666654 666788888887632 2333 33444454444443
Done!