RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy953
(164 letters)
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 169 bits (431), Expect = 1e-49
Identities = 40/129 (31%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ G+ RF+AR + E+ E
Sbjct: 268 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 327
Query: 59 KGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHT 118
G + + + CSR +E + PQW++R +AE+ ++ ++ G++ +P+
Sbjct: 328 AGHLVKEEDYTIALATCSRCGTPIEYAIFPQWWLRMRPLAEEVLKGLRRGDIAFVPERWK 387
Query: 119 KTWYQWLEN 127
K WLEN
Sbjct: 388 KVNMDWLEN 396
>1wka_A Valyl-tRNA synthetase; editing, CP1, fidelity, thermus thrmophilus,
translation, amino acid, structural genomics; 1.70A
{Thermus thermophilus} SCOP: b.51.1.1 PDB: 1wk9_A*
Length = 147
Score = 81.0 bits (201), Expect = 2e-20
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDY--GEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ G+ RF+AR + E+ E
Sbjct: 77 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 136
Query: 59 KGL 61
G
Sbjct: 137 AGH 139
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
structural genomics/proteom initiative, RSGI, structural
genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Length = 821
Score = 66.4 bits (163), Expect = 1e-13
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 15/134 (11%)
Query: 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG- 60
V +P D E A+ LPL+ +EEG ++ + F G+ +A + L +G
Sbjct: 318 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRGL 375
Query: 61 -LYRGTVSHAMVVPLCSRSKDVVEPLL---KPQWYVRTGEMAEKAVQAVKTGELKIIPDH 116
+ H+ P C R PL+ W+++ ++ ++ + + +P H
Sbjct: 376 LFKEESYLHS--YPHCWRCS---TPLMYYATESWFIKNTLFKDELIRNNQE--IHWVPPH 428
Query: 117 -HTKTWYQWLENNR 129
+ +WL+N
Sbjct: 429 IKEGRYGEWLKNLV 442
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Length = 917
Score = 60.3 bits (147), Expect = 2e-11
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
V +PGH +DY V Q+ LP+I+ +++GV + G+F GM A VT++LTEKG
Sbjct: 323 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 382
Query: 61 --LYRGTVSHAMVVPLCSRSKDVVEPLLK---PQWYVRTGEMAEKAVQAVK 106
L ++H+ P R+K +P++ PQW+ ++ + + A++
Sbjct: 383 ALLKLDFITHS--YPHDWRTK---KPVIFRATPQWFASISKVRQDILDAIE 428
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 58.1 bits (140), Expect = 1e-10
Identities = 17/130 (13%), Positives = 41/130 (31%), Gaps = 2/130 (1%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
V D E ++ + +G+ + G + + + + + EKG
Sbjct: 378 EVNKLGIKSQKDKEKLEQATKTIYKAEYHKGIF--KVPPYEGKPVQEVKEAIAKEMLEKG 435
Query: 61 LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
+ A + V ++ QW++ G K +KI+P+
Sbjct: 436 IAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYGNPEWKEKARKALERMKILPETRRAQ 495
Query: 121 WYQWLENNRE 130
+ ++ +
Sbjct: 496 FEAIIDWLDK 505
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
acid, aminoacylation, trnaLeu, structural genomics;
2.05A {Pyrococcus horikoshii}
Length = 810
Score = 53.4 bits (128), Expect = 4e-09
Identities = 13/95 (13%), Positives = 32/95 (33%)
Query: 36 DYGEFTGMKRFDARTRVTEVLTEKGLYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTG 95
+ G + + + + + EKG+ A + V ++ QW++ G
Sbjct: 411 KVPPYEGKPVQEVKEAIAKEMLEKGIAEIMYEFAEKNVISRFGNRAVIKIIHDQWFIDYG 470
Query: 96 EMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNRE 130
K +KI+P+ + ++ +
Sbjct: 471 NPEWKEKARKALERMKILPETRRAQFEAIIDWLDK 505
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 51.5 bits (124), Expect = 8e-09
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 6 PGHDHNDYEVAQRLNLPLITV-------------FNEEGVIIGDYGEFTGMKRFDARTRV 52
P HD D+E A++ +LP+ V + +G ++ + F G+ A+ ++
Sbjct: 143 PAHDQRDWEFAKKYDLPIKVVVKPEGAWDFEKGAYEGKGTLV-NSDGFDGLDSETAKRKI 201
Query: 53 TEVLTEKGLYRGTV 66
TE L ++GL V
Sbjct: 202 TEWLQDRGLGEKKV 215
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding,
protein biosynthesis I aminoacyl-tRNA synthetase,
ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A
4ari_A* 4as1_A*
Length = 880
Score = 51.8 bits (125), Expect = 1e-08
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 6 PGHDHNDYEVAQRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDART 50
PGHD DYE A + L + V E+GV+ + GEF G+ A
Sbjct: 359 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFN 417
Query: 51 RVTEVLTEKGLYRGTV 66
+ + LT G+ V
Sbjct: 418 AIADKLTAMGVGERKV 433
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 47.9 bits (115), Expect = 1e-07
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
Query: 6 PGHDHNDYEVAQRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDART 50
PGHD DYE A + L + V E+GV+ + GEF G+ A
Sbjct: 122 PGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLF-NSGEFNGLDHEAAFN 180
Query: 51 RVTEVLTEKGLYRGTV 66
+ + LT G+ V
Sbjct: 181 AIADKLTAMGVGERKV 196
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Length = 878
Score = 48.7 bits (117), Expect = 2e-07
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 6 PGHDHNDYEVAQRLNLPLITV---------------FNEEGVIIGDYGEFTGMKRFDART 50
P HD DYE A++ LP+ V + E G+++ + G F G + + +
Sbjct: 341 PAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMV-NSGPFDGTESEEGKR 399
Query: 51 RVTEVLTEKGLYRGTV 66
+V L EKGL +G V
Sbjct: 400 KVIAWLEEKGLGKGRV 415
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 41.4 bits (98), Expect = 3e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG- 60
V +P D E A+ LPL+ +EEG ++ + F G+ +A + L +G
Sbjct: 119 VHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRGL 176
Query: 61 -LYRGTVSH 68
+ H
Sbjct: 177 LFKEESYLH 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 3e-05
Identities = 27/200 (13%), Positives = 53/200 (26%), Gaps = 48/200 (24%)
Query: 4 ISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYR 63
++ + ++ V + L L+ + D+ ++ + + +L K
Sbjct: 187 LNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 64 G-----TVSHAMVVPL----C-----SRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGE 109
V +A C +R K V + L + + + +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 110 L-----------------KIIP----------DHHTKTWYQWLENNREKKDRIGESQPFR 142
L P TW W N +K I
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------I 359
Query: 143 ERTLSVEDPRTLWSPYSNLS 162
E +L+V +P + LS
Sbjct: 360 ESSLNVLEPAEYRKMFDRLS 379
Score = 34.8 bits (79), Expect = 0.009
Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 45/156 (28%)
Query: 8 HDHNDYEVAQR--LNLPLITVFNEEGVIIGDYGEFTGMKRFDAR-----TRVTEVLTEKG 60
H H D+E + +++VF + + + FD + + +L+++
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDA--FVDN---------FDCKDVQDMPK--SILSKE- 49
Query: 61 LYRGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKT 120
+ H ++ D V L+ W + + + E+ VQ L+ +
Sbjct: 50 ----EIDHIIMSK------DAVSGTLRLFWTLLSKQ--EEMVQKFVEEVLR--IN----- 90
Query: 121 WYQWLENNREKKDRIGESQPFRERTLSVEDPRTLWS 156
Y++L + + + R QP + +E L++
Sbjct: 91 -YKFLMSPIKTEQR----QPSMMTRMYIEQRDRLYN 121
Score = 27.5 bits (60), Expect = 3.0
Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 44/130 (33%)
Query: 68 HAMVV-----PLCSRSKDVVEPLLKPQWY------VRTGEMAEKA------------VQA 104
H +V P S D++ P L +Y ++ E E+ ++
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 105 VKTGELKIIPDHHTKTWYQW------LENNREKKDRIGESQPFRERTL-SVED------P 151
KI H + W L+ + K I ++ P ER + ++ D
Sbjct: 506 ------KIR--HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 152 RTLWSPYSNL 161
+ S Y++L
Sbjct: 558 NLICSKYTDL 567
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.016
Identities = 26/127 (20%), Positives = 39/127 (30%), Gaps = 43/127 (33%)
Query: 3 KISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLY 62
+ + N L+ +F +G DY F+ E L + LY
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQG-NTDDY--------FE------E-LRD--LY 177
Query: 63 RGTVSHAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTW- 121
H +V L S + + L +RT AEK T+
Sbjct: 178 --QTYHVLVGDLIKFSAETLSEL------IRTTLDAEK---------------VFTQGLN 214
Query: 122 -YQWLEN 127
+WLEN
Sbjct: 215 ILEWLEN 221
Score = 33.9 bits (77), Expect = 0.019
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 84 PLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGES 138
LL P + ++ + V + +++I P + T + R I E
Sbjct: 430 HLLVPASDLINKDLVKNNV-SFNAKDIQI-PVYDTFDG----SDLRVLSGSISER 478
Score = 26.9 bits (59), Expect = 4.5
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 129 REKKDRIGESQ---PFRERTLSVE---DPRTLWSPY-SNL 161
R+ K G Q PF ER L P SP+ S+L
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA--SPFHSHL 431
>2wfd_A Leucyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA synthetase,
phosphoprotein, editing domain, nucleotide-binding,
hydrolysis of MIS-charged trnas; 3.25A {Homo sapiens}
Length = 252
Score = 31.1 bits (70), Expect = 0.13
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 9 DHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYR 63
ND E + EG+++ F G K D + + + + + G
Sbjct: 196 SQNDREKLAEAKEKIYLKGFYEGIML--VDGFKGQKVQDVKKTIQKKMIDAGDAL 248
Score = 26.9 bits (59), Expect = 3.0
Identities = 16/111 (14%), Positives = 32/111 (28%), Gaps = 14/111 (12%)
Query: 2 VKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGL 61
V P +D + L ++ + YG M V E+ L
Sbjct: 132 VTSVPSDSPDDIAALRDLK--------KKQALRAKYGIRDDMVLPFEPVPVIEIPGFGNL 183
Query: 62 YRGTVSHAMVV------PLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVK 106
T+ + + + +K+ + + + + VQ VK
Sbjct: 184 SAVTICDELKIQSQNDREKLAEAKEKIYLKGFYEGIMLVDGFKGQKVQDVK 234
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 1.00
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 83 EPLLKPQWY-VRTGEMAEK-AVQAVKTGELKIIPDHHTKTWYQWLENNREK---KDRIGE 137
EP +W + + E A V E + + W Q EK +RI +
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
Query: 138 SQPFRER 144
+++
Sbjct: 143 KAFYQQP 149
>3pz6_A Leurs, leucyl-tRNA synthetase; editing domain, glleurs_CP1, ligase;
2.60A {Giardia intestinalis}
Length = 311
Score = 28.2 bits (62), Expect = 1.2
Identities = 6/32 (18%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 30 EGVIIGDYGEFTGMKRFDARTRVTEVLTEKGL 61
G++ G F G D + ++L +
Sbjct: 271 TGIMK--MGPFAGQSVKDCKQSCRDLLVQNNQ 300
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4
PDB: 1i6n_A
Length = 278
Score = 27.8 bits (62), Expect = 1.6
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
Query: 81 VVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLENN------REKKDR 134
+E + PQ V T E A + V V + ++ D +++ + + +
Sbjct: 140 ALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGLVLD----SFHFHAMGSNIESLKQADGKK 195
Query: 135 IG 136
I
Sbjct: 196 IF 197
>2wfg_A Cytosolic leucyl-tRNA synthetase; ligase, editing domain,
hydrolysis of MIS-charged trnas, benzoxaborole,
anti-fungal; HET: ZZB; 2.20A {Candida albicans} PDB:
2wfe_A*
Length = 261
Score = 27.6 bits (61), Expect = 2.0
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 37 YGEFTGMKRFDARTRVTEVLTEKGL----YRGTVSH 68
G++ G K DA+ +V + L ++GL + H
Sbjct: 221 IGKYKGDKVEDAKPKVKQDLIDEGLAFVYNEPELEH 256
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase
1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens}
SCOP: a.211.1.2
Length = 365
Score = 27.5 bits (61), Expect = 2.5
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 6/68 (8%)
Query: 70 MVVPLCSRSKDVVEPLLKP------QWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQ 123
+V P S DV E ++P + + + V+ G+ TW +
Sbjct: 287 IVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVK 346
Query: 124 WLENNREK 131
++ N++K
Sbjct: 347 RIQENKQK 354
>2o6k_A UPF0346 protein MW1311; ZR218, NESG, structural genomics, PSI-2,
protein structure initiative; 2.10A {Staphylococcus
aureus subsp} SCOP: a.60.15.1
Length = 81
Score = 24.8 bits (54), Expect = 6.6
Identities = 5/21 (23%), Positives = 10/21 (47%)
Query: 117 HTKTWYQWLENNREKKDRIGE 137
++YQ++ R + D G
Sbjct: 2 KNYSFYQFVMTVRGRHDDKGR 22
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino
acid biosynthesis, DHQS, O form J, domain movement,
cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans}
SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A*
1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Length = 393
Score = 25.8 bits (57), Expect = 7.5
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 10/58 (17%)
Query: 97 MAEKAVQAVKTGELKIIPDHHTKTWYQWLENNREKKDRIGESQPFRERTLSVEDPRTL 154
MAE +KT I + + LE N E + + L
Sbjct: 192 MAE----VIKTA---AISS---EEEFTALEENAETILKAVRREVTPGEHRFEGTEEIL 239
>3udf_A Penicillin-binding protein 1A; transglycosylase, transpeptidase;
HET: MES; 1.70A {Acinetobacter baumannii} PDB: 3udi_A*
3udx_A* 3ue0_A* 3ue1_A*
Length = 731
Score = 25.7 bits (57), Expect = 8.7
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 7 GHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGE 39
H N Y + L PL V+ + +I +YG
Sbjct: 5 HHHENLYFQSHMLLKPL-QVYTADNQLIAEYGG 36
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,620,379
Number of extensions: 149337
Number of successful extensions: 401
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 35
Length of query: 164
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 78
Effective length of database: 4,300,587
Effective search space: 335445786
Effective search space used: 335445786
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)