RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy953
(164 letters)
>d1ffya2 b.51.1.1 (A:201-394) Isoleucyl-tRNA synthetase (IleRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 194
Score = 50.8 bits (120), Expect = 5e-09
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
V +PGH +DY V Q+ LP+I+ +++GV + G+F GM A VT++LTEKG
Sbjct: 123 CVHTAPGHGEDDYIVGQQYELPVISPIDDKGVFTEEGGQFEGMFYDKANKAVTDLLTEKG 182
Query: 61 --LYRGTVSH 68
L ++H
Sbjct: 183 ALLKLDFITH 192
>d1wkaa1 b.51.1.1 (A:195-337) Valyl-tRNA synthetase (ValRS) {Thermus
thermophilus [TaxId: 274]}
Length = 143
Score = 48.7 bits (115), Expect = 1e-08
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVII--GDYGEFTGMKRFDARTRVTEVLTE 58
A+K++P HD DYE+ +R L ++V N EG + G+ RF+AR + E+ E
Sbjct: 74 ALKVTPAHDPLDYEIGERHGLKPVSVINLEGRMEGERVPEALRGLDRFEARRKAVELFRE 133
Query: 59 KGLYRGTVSH 68
G +
Sbjct: 134 AGHLVKEEDY 143
>d1h3na2 b.51.1.1 (A:226-417) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 192
Score = 46.1 bits (108), Expect = 2e-07
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 14/80 (17%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFN--------------EEGVIIGDYGEFTGMKRF 46
A+ P HD DYE A++ LP+ V EE I+ + G F G +
Sbjct: 111 AIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESE 170
Query: 47 DARTRVTEVLTEKGLYRGTV 66
+ + +V L EKGL +G V
Sbjct: 171 EGKRKVIAWLEEKGLGKGRV 190
>d1udza_ b.51.1.1 (A:) Isoleucyl-tRNA synthetase (IleRS) {Thermus
thermophilus [TaxId: 274]}
Length = 179
Score = 41.5 bits (96), Expect = 9e-06
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 1 AVKISPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKG 60
V +P D E A+ LPL+ +EEG ++ + F G+ +A + L +G
Sbjct: 115 IVHQAPAFGAEDLETARVYGLPLLKTVDEEGKLLVE--PFKGLYFREANRAILRDLRGRG 172
Query: 61 L 61
Sbjct: 173 F 173
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase
(IleRS) {Thermus thermophilus [TaxId: 274]}
Length = 452
Score = 30.3 bits (67), Expect = 0.094
Identities = 9/62 (14%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 68 HAMVVPLCSRSKDVVEPLLKPQWYVRTGEMAEKAVQAVKTGELKIIPDHHTKTWYQWLEN 127
A+ P C R + W+++ ++ ++ + + +P H + Y
Sbjct: 193 VALGYPHCWRCSTPLMYYATESWFIKNTLFKDELIRNNQE--IHWVPPHIKEGRYGEWLK 250
Query: 128 NR 129
N
Sbjct: 251 NL 252
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 28.1 bits (62), Expect = 0.49
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 15/78 (19%)
Query: 70 MVVPLCSRSKDVVEPLLKP----------QWYVRTGEMAEKAVQAVKTGELKIIPDHHTK 119
+V P S DV E ++P Q + + + V+ G+
Sbjct: 283 IVEPTFSVLTDVAEKSVQPLADEDSKSKNQPSFQWRQPSLD----VEVGDPNPDVVSFRS 338
Query: 120 TWYQWLENNREK-KDRIG 136
TW + ++ N++K K+R
Sbjct: 339 TWVKRIQENKQKWKERAA 356
>d2bw4a2 b.6.1.3 (A:166-338) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 173
Score = 25.2 bits (55), Expect = 3.3
Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 5 SPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRG 64
+PG + D A R P VFN G G TG A ++ R
Sbjct: 33 TPGEAYEDAVKAMRTLTPTHIVFN------GAVGALTGDHALTAAVGERVLVVHSQANRD 86
Query: 65 TVSHAM 70
T H +
Sbjct: 87 TRPHLI 92
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 291
Score = 25.2 bits (54), Expect = 4.3
Identities = 5/34 (14%), Positives = 10/34 (29%)
Query: 109 ELKIIPDHHTKTWYQWLENNREKKDRIGESQPFR 142
I ++ T W + + KD +
Sbjct: 228 RYHRIGANYVPTLNAWADALQAHKDEAIALKGQE 261
>d2o6ka1 a.60.15.1 (A:4-73) Uncharacterized protein MW1311
{Staphylococcus aureus [TaxId: 1280]}
Length = 70
Score = 23.9 bits (52), Expect = 4.7
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 120 TWYQWLENNREKKDRIGE 137
++YQ++ R + D G
Sbjct: 2 SFYQFVMTVRGRHDDKGR 19
>d1mzya2 b.6.1.3 (A:194-371) Nitrite reductase, NIR {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 178
Score = 24.7 bits (54), Expect = 6.0
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 6/46 (13%)
Query: 5 SPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDART 50
P + D +P VFN G G TG A+
Sbjct: 37 DPSEGYEDMVAVMDTLIPSHIVFN------GAVGALTGEGALKAKV 76
>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide
synthase {Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 24.2 bits (51), Expect = 7.7
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 93 RTGEMAEKAVQAVKTGELKIIP 114
R ++ + +Q V G+L+++P
Sbjct: 160 RYRQLLQHILQHVADGKLEVLP 181
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 177
Score = 24.0 bits (52), Expect = 9.0
Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 6/66 (9%)
Query: 5 SPGHDHNDYEVAQRLNLPLITVFNEEGVIIGDYGEFTGMKRFDARTRVTEVLTEKGLYRG 64
+ + D R P VFN G G TG A+ T +L R
Sbjct: 33 TLAESYGDTVQVMRTLTPSHIVFN------GKVGALTGANALTAKVGETVLLIHSQANRD 86
Query: 65 TVSHAM 70
T H +
Sbjct: 87 TRPHLI 92
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.404
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,023
Number of extensions: 27679
Number of successful extensions: 87
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 16
Length of query: 164
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 85
Effective length of database: 1,322,926
Effective search space: 112448710
Effective search space used: 112448710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)