BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy9531
         (409 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2EGO|A Chain A, Crystal Structure Of Tamalin Pdz Domain
 pdb|2EGO|B Chain B, Crystal Structure Of Tamalin Pdz Domain
 pdb|2EGN|A Chain A, Crystal Structure Of Tamalin Pdz Domain In Complex With
           Mglur5 C-Terminal Peptide
          Length = 96

 Score = 28.9 bits (63), Expect = 5.3,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 166 MELEKGENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTT 225
           + LEKG+N+ +  +I      + +GL   E+Q    +T    +HES    +A +  G T 
Sbjct: 8   LTLEKGDNQTFGFEI------QTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTI 61

Query: 226 AQLEALQTQIELKISSKTENIDNVITAEEKALQREARKG 264
           A +  L  +       +   I ++I A    L+ E   G
Sbjct: 62  ASVNGLNVE-----GIRHREIVDIIKASGNVLRLETLYG 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.133    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,483,702
Number of Sequences: 62578
Number of extensions: 475154
Number of successful extensions: 1156
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1156
Number of HSP's gapped (non-prelim): 8
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)