Query psy9531
Match_columns 409
No_of_seqs 141 out of 171
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:00:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2370|consensus 100.0 7E-136 2E-140 1032.3 25.2 363 17-397 94-611 (623)
2 PF09732 CactinC_cactus: Cactu 100.0 5E-77 1.1E-81 517.9 10.0 113 285-397 1-113 (125)
3 PF10312 Cactin_mid: Conserved 100.0 1.6E-50 3.4E-55 376.2 15.4 161 83-247 1-166 (191)
4 KOG0227|consensus 91.8 0.14 3.1E-06 49.0 3.1 58 324-383 129-192 (222)
5 COG5246 PRP11 Splicing factor 91.4 0.15 3.3E-06 48.5 2.8 57 325-383 136-198 (222)
6 PF10312 Cactin_mid: Conserved 87.6 1.3 2.8E-05 42.1 5.9 50 142-191 135-184 (191)
7 KOG1029|consensus 85.3 24 0.00051 40.6 14.7 82 148-241 481-564 (1118)
8 KOG2370|consensus 70.7 8.3 0.00018 41.8 5.7 46 142-187 282-327 (623)
9 KOG1029|consensus 62.2 56 0.0012 37.8 10.1 26 52-77 365-390 (1118)
10 PTZ00121 MAEBL; Provisional 59.4 48 0.001 40.7 9.4 33 50-82 1134-1166(2084)
11 KOG2072|consensus 54.9 60 0.0013 37.6 8.9 54 46-99 795-848 (988)
12 smart00774 WRKY DNA binding do 49.9 25 0.00053 27.8 3.7 50 302-360 3-52 (59)
13 PTZ00121 MAEBL; Provisional 48.9 1.2E+02 0.0027 37.5 10.5 64 52-115 1154-1220(2084)
14 PF14147 Spore_YhaL: Sporulati 43.0 40 0.00086 26.2 3.7 29 60-88 19-51 (52)
15 KOG1772|consensus 42.6 1.3E+02 0.0028 26.7 7.2 38 49-86 16-53 (108)
16 PF09736 Bud13: Pre-mRNA-splic 40.5 1.5E+02 0.0032 27.1 7.8 12 24-36 5-16 (145)
17 PF10252 PP28: Casein kinase s 39.2 59 0.0013 27.4 4.5 30 51-80 51-80 (82)
18 KOG3054|consensus 37.5 4E+02 0.0086 27.1 10.7 16 223-238 257-272 (299)
19 KOG0163|consensus 37.4 1.9E+02 0.0042 33.7 9.4 32 43-74 918-949 (1259)
20 PF04889 Cwf_Cwc_15: Cwf15/Cwc 35.1 1E+02 0.0022 30.5 6.3 24 52-75 149-172 (244)
21 PF07946 DUF1682: Protein of u 34.4 1.8E+02 0.004 29.5 8.2 11 89-99 305-315 (321)
22 PF09756 DDRGK: DDRGK domain; 31.8 15 0.00033 35.0 0.0 12 224-235 157-168 (188)
23 PF01701 PSI_PsaJ: Photosystem 30.1 14 0.00031 26.8 -0.4 10 328-337 28-37 (37)
24 PRK00247 putative inner membra 29.9 2.6E+02 0.0056 30.1 8.6 33 55-87 326-358 (429)
25 PF03879 Cgr1: Cgr1 family; I 29.9 3.9E+02 0.0085 23.6 9.0 53 34-86 33-85 (108)
26 PHA00451 protein kinase 29.5 3.1E+02 0.0068 28.4 8.6 84 37-125 266-355 (362)
27 PLN03086 PRLI-interacting fact 28.9 3.2E+02 0.007 30.5 9.3 13 141-153 154-166 (567)
28 PF13983 YsaB: YsaB-like lipop 28.7 24 0.00053 29.1 0.6 16 382-397 56-72 (77)
29 KOG4364|consensus 27.7 3.1E+02 0.0068 31.4 8.9 6 291-296 731-736 (811)
30 PF11861 DUF3381: Domain of un 27.6 70 0.0015 29.6 3.5 40 119-165 34-75 (159)
31 PRK06654 fliL flagellar basal 26.8 74 0.0016 30.4 3.6 32 210-241 127-161 (181)
32 KOG2002|consensus 26.5 2.8E+02 0.0061 32.9 8.6 45 58-102 841-888 (1018)
33 PRK07945 hypothetical protein; 26.3 2.2E+02 0.0048 29.1 7.2 75 157-236 5-85 (335)
34 PF15236 CCDC66: Coiled-coil d 26.0 4.2E+02 0.009 24.9 8.2 11 18-28 29-39 (157)
35 PF11056 UvsY: Recombination, 25.9 1.3E+02 0.0028 27.2 4.8 52 160-223 73-129 (129)
36 KOG0345|consensus 24.2 3E+02 0.0065 30.5 7.8 36 31-66 469-504 (567)
37 KOG4709|consensus 23.8 2.6E+02 0.0056 27.4 6.6 12 49-60 49-60 (217)
38 KOG2507|consensus 23.7 1E+02 0.0022 33.4 4.2 61 38-98 203-267 (506)
39 PRK02733 photosystem I reactio 21.7 18 0.00039 27.0 -1.2 9 329-337 29-37 (42)
40 PF11014 DUF2852: Protein of u 21.5 1.8E+02 0.0039 26.0 4.7 24 74-97 89-112 (115)
41 CHL00105 psaJ photosystem I su 21.0 20 0.00043 26.7 -1.1 9 329-337 29-37 (42)
42 PF14943 MRP-S26: Mitochondria 20.2 7.3E+02 0.016 23.4 10.5 52 53-104 80-131 (170)
No 1
>KOG2370|consensus
Probab=100.00 E-value=7.1e-136 Score=1032.34 Aligned_cols=363 Identities=51% Similarity=0.906 Sum_probs=335.2
Q ss_pred cchhhH----hhhhhhc-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy9531 17 NQRLVY----ARMQVQG-TGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK-EAAQ 90 (409)
Q Consensus 17 ~~~~~~----~r~~~~~-~~~~~~~~~~~~~~~~~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRer-E~eq 90 (409)
|+.||| +|....| ++..|+ ++ -..+|+.+|+.|+++||+||++|+.|++++|+++.|+||++ ++.|
T Consensus 94 T~tFvw~kklere~~rgls~~ef~--~~------~~qrr~renl~evekvkk~reer~~eka~~Ede~mmlqrar~aa~q 165 (623)
T KOG2370|consen 94 TRTFVWGKKLEREGSRGLSPREFR--VS------NQQRRARENLPEVEKVKKRREERREEKAMQEDEFMMLQRARRAAIQ 165 (623)
T ss_pred hhheeccchhhhhcccCCChhhcc--Hh------hHHHHHHhcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 789999 9999999 556677 44 45566899999999999999999999999999999999999 8999
Q ss_pred HHHHHHhhhhhhHHHHHhhhhhhhccCCCChhhHHHhhcCCccccccccccchhHHhhcCCHHhHHHHHHHHHHHHhhhc
Q psy9531 91 FEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEK 170 (409)
Q Consensus 91 ~~ew~~kEdeFhL~Qak~RS~IRI~eGRaKpIDlLAk~I~~~~d~~dvel~ePy~v~~gLs~~dLEeL~eDIk~y~~LE~ 170 (409)
|.+|..|| |||+|+|+||.|||++|||||||+|++||.++ ++++++|++||.||+||+++|||+|..||++|++||+
T Consensus 166 f~d~~~ke--Fh~dq~KlrseIrl~~Grak~idll~~~~dfg-deldmel~eP~~vlkg~~vedlEel~~dIk~y~ele~ 242 (623)
T KOG2370|consen 166 FKDWRSKE--FHFDQDKLRSEIRLRPGRAKPIDLLKNYIDFG-DELDMELSEPYSVLKGLKVEDLEELSRDIKDYQELET 242 (623)
T ss_pred hccccccc--chhhhHhhhheeeecCCccchhhHHHhhhccc-chhhhhccChHHHHccCCHhHHHHHHHHHHHHHHHhc
Confidence 99999999 99999999999999999999999999999996 4479999999999999999999999999999999997
Q ss_pred -CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCHHHHHHHHHHHHHHHhcCCCCCC--
Q psy9531 171 -GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQIELKISSKTENID-- 247 (409)
Q Consensus 171 -~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~~eL~~Le~~I~~KL~s~~~~vD-- 247 (409)
+++.+||++|.+||+|+|++.+ .+.+ .+..+||++|..||..||.|||++||++|+.||++||+||.+ +|
T Consensus 243 ~~kr~tyW~~v~~iv~delq~~~--~aqn----sRgd~~haave~dv~~il~~Ks~~qL~eLe~qieaklrsns~-~d~~ 315 (623)
T KOG2370|consen 243 NQKRLTYWKDVIMIVNDELQHNK--VAQN----SRGDKLHAAVEVDVRKILAGKSFEQLEELEAQIEAKLRSNSP-LDTD 315 (623)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH--hhhh----ccccceehhhhhhHHHHhCCcCHHHHHHHHHHHHHHhccCCC-cchh
Confidence 9999999999999999999973 2221 134569999999999999999999999999999999999997 66
Q ss_pred --------------------------------------------------------------------------------
Q psy9531 248 -------------------------------------------------------------------------------- 247 (409)
Q Consensus 248 -------------------------------------------------------------------------------- 247 (409)
T Consensus 316 YWedll~qLk~ykAra~Lke~h~e~Lr~~l~~Lk~e~~~e~~qevapqlkeemed~eee~~~~~~Dpel~e~e~a~~~r~ 395 (623)
T KOG2370|consen 316 YWEDLLNQLKSYKARARLKETHNEELRIRLNKLKNEEWDEAFQEVAPQLKEEMEDREEELYIVPIDPELIEREQAIPRRP 395 (623)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhChhhhhhhhcchhhcccCCCCCCccccccccCCCC
Confidence
Q ss_pred ------------------------------------------------------------------ccchHHHHHHHHHH
Q psy9531 248 ------------------------------------------------------------------NVITAEEKALQREA 261 (409)
Q Consensus 248 ------------------------------------------------------------------~~~~~~e~~~~~~a 261 (409)
+...+.+..|...|
T Consensus 396 l~~e~~d~~rel~~~gny~~S~~yi~~~~ptqa~dp~~p~~e~Ll~e~e~~~~~tqr~~R~~~~~ds~~aPqe~em~a~a 475 (623)
T KOG2370|consen 396 LPEELADYERELYDAGNYVKSPTYIPESDPTQAQDPTEPKNENLLNEDEDSIANTQRLERLYLQSDSAEAPQELEMLADA 475 (623)
T ss_pred CchHHHHHHHHHHHccccccCcccccCCCcccccCCCCcchhhhhhhhHHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHH
Confidence 00011133456778
Q ss_pred HcCCCCCcccccccccCCCccccccccCCCCCCcccccccccccccccccccCCCCCCCCcccceeeeeeecccCCCCCC
Q psy9531 262 RKGMGGDEAEFSVESLLDPQVYLWSDKYRPRKPRYFNRVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNS 341 (409)
Q Consensus 262 ~~gm~~~e~~f~~e~~l~~~~y~W~dKyrpRKPryFNRV~tGyeWNKYNqTHYD~DNPPPK~VQGYKFNIFYPDLidktk 341 (409)
..||+.++++|++|++|++++||||||||||||+||||||||||||||||||||+|||||||||||||||||||||||++
T Consensus 476 ~eGMq~~eaifgaE~~Lda~~~lw~DkyrprKP~YfNRVhtGfeWNkYNQtHyd~dnPPPKiVQGYkFNIFYPDLidk~~ 555 (623)
T KOG2370|consen 476 VEGMQTDEAIFGAEVNLDAEVYLWHDKYRPRKPHYFNRVHTGFEWNKYNQTHYDEDNPPPKIVQGYKFNIFYPDLIDKGR 555 (623)
T ss_pred HhcccccchhccchhcccchhhhhccCcCcCCcchhhhhccccccccccccccccCCCCchhhcceeecccchhhhcccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeecCCCCCeEEEEEecCCCCcceeeeeecccccccCCCcccccccccccc
Q psy9531 342 TPQYFLNTCADNQDFAILRFHAGPPYEDIAFKIVNREWEYSYKRGFRCHDETSATL 397 (409)
Q Consensus 342 ~Pty~i~~~~~~~dtciirF~AGPPYEDIAFrIVnrEWeys~krGFk~~F~rGi~~ 397 (409)
||+|+|++|+++.||||||||||||||||||+|||||||||||+||||+|+||||+
T Consensus 556 aP~y~ie~~~d~~d~ciIRF~aGpPYeDIAFkIVnkeWeyshKrGfKcqF~ngvlq 611 (623)
T KOG2370|consen 556 APTYRIERCRDKNDFCIIRFHAGPPYEDIAFKIVNKEWEYSHKRGFKCQFDNGVLQ 611 (623)
T ss_pred CCeeeeeecCCCCceEEEEeccCCcchhhhhhhhcchhhhhhhcCccceeeCCeee
Confidence 99999999999999999999999999999999999999999999999999999986
No 2
>PF09732 CactinC_cactus: Cactus-binding C-terminus of cactin protein; InterPro: IPR019134 This entry represents the C-terminal 200 residues of the cactin protein which is necessary for the association of cactin with IkappaB-cactus, as one of the intracellular members of the Rel complex. The Rel (NF-kappaB) pathway is conserved in invertebrates and vertebrates. In mammals, it controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development and in the establishment of dorsal-ventral polarity in the early embryo []. Most members of the family also have the conserved mid region of cactin (IPR018816 from INTERPRO) further upstream.
Probab=100.00 E-value=5e-77 Score=517.94 Aligned_cols=113 Identities=80% Similarity=1.436 Sum_probs=111.9
Q ss_pred ccccCCCCCCcccccccccccccccccccCCCCCCCCcccceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEEEecC
Q psy9531 285 WSDKYRPRKPRYFNRVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHAG 364 (409)
Q Consensus 285 W~dKyrpRKPryFNRV~tGyeWNKYNqTHYD~DNPPPK~VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciirF~AG 364 (409)
|+||||||||+||||||||||||||||||||+||||||+|||||||||||||||++++|+|+|++++++++||||+||||
T Consensus 1 w~~~~~~~kP~~fnrv~tg~~WnkyN~thYd~dnpPPK~vqGYkFnIfYPdL~d~~~~P~y~i~~~~~~~~~~~L~F~Ag 80 (125)
T PF09732_consen 1 WSDKYRPRKPRYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLIDKSKTPRYRIEPDEDNPDFCILRFHAG 80 (125)
T ss_pred CCccCcccCCcEEEEEEecccccccchhccCCCCCCCceeeeeEEEEECCcccCCCCCCcEEEEECCCCCCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred CCCcceeeeeecccccccCCCcccccccccccc
Q psy9531 365 PPYEDIAFKIVNREWEYSYKRGFRCHDETSATL 397 (409)
Q Consensus 365 PPYEDIAFrIVnrEWeys~krGFk~~F~rGi~~ 397 (409)
||||||||||||||||||+++||||+|++|||+
T Consensus 81 pPYeDIAFkIvnrEWd~s~k~Gfr~~Fd~gilq 113 (125)
T PF09732_consen 81 PPYEDIAFKIVNREWDYSHKRGFRCSFDRGILQ 113 (125)
T ss_pred CCCcCEEEEEecCeeecCCCCCceEEeeCCEEE
Confidence 999999999999999999999999999999986
No 3
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=100.00 E-value=1.6e-50 Score=376.22 Aligned_cols=161 Identities=53% Similarity=0.874 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhhccCCCChhhHHHhhcCCc----cccccccccchhHHhhcCCHHhHHHH
Q psy9531 83 QRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSE----AEVDAVEMHEPYTYLTGLAIKDLEDL 158 (409)
Q Consensus 83 qRerE~eq~~ew~~kEdeFhL~Qak~RS~IRI~eGRaKpIDlLAk~I~~~----~d~~dvel~ePy~v~~gLs~~dLEeL 158 (409)
||++++++|++|++||++|||+||++||.|||++|||||||+||+||+.. +++++++|++||+||+|||++||++|
T Consensus 1 qR~~e~~~~~ew~~kE~~F~L~Qak~rs~iRi~egRaKpID~La~~l~~~~~~~~~~~~~~~~eP~~i~~gL~~~dleeL 80 (191)
T PF10312_consen 1 QREREAEQFEEWEAKEEEFHLEQAKKRSEIRIREGRAKPIDLLAKNLRIIDGEREDDLEIELHEPYTIFEGLSLEDLEEL 80 (191)
T ss_pred CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHhhccccccccccCcccCHHHHHhhCCHHHHHHH
Confidence 68999999999999999999999999999999999999999999999875 46788999999999999999999999
Q ss_pred HHHHHHHHhhhc-CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCHHHHHHHHHHHHH
Q psy9531 159 LEDIKVYMELEK-GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQIEL 237 (409)
Q Consensus 159 ~eDIk~y~~LE~-~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~~eL~~Le~~I~~ 237 (409)
.+||++|++||+ ..|.+||.+|++||+|+|+++++.++.+. +.+.|||+||.+||++||+|||++||.+||.+|++
T Consensus 81 ~~dIk~y~~Le~~~~n~~fW~~~~~v~~del~~~~~~~~~~~---~~~~~ih~sV~~dI~~il~gKs~~eL~~Le~qI~~ 157 (191)
T PF10312_consen 81 LEDIKVYLELERDNKNREFWEAMLVVCEDELAKLRKKEPEGR---AVRSGIHSSVAADIQKILSGKSYEELEELEQQIKA 157 (191)
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhccccccc---chhhcccHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 999999999999 45999999999999999999987554432 22579999999999999999999999999999999
Q ss_pred HHhcCCCCCC
Q psy9531 238 KISSKTENID 247 (409)
Q Consensus 238 KL~s~~~~vD 247 (409)
||+||++ +|
T Consensus 158 KL~s~~~-~D 166 (191)
T PF10312_consen 158 KLRSGEA-ID 166 (191)
T ss_pred HhhcCCC-cc
Confidence 9999997 77
No 4
>KOG0227|consensus
Probab=91.80 E-value=0.14 Score=48.99 Aligned_cols=58 Identities=33% Similarity=0.579 Sum_probs=45.3
Q ss_pred cceeeeeeecccCCCCCCCCcEEEeec------CCCCCeEEEEEecCCCCcceeeeeecccccccC
Q psy9531 324 VQGYKFNIFYPDLIDKNSTPQYFLNTC------ADNQDFAILRFHAGPPYEDIAFKIVNREWEYSY 383 (409)
Q Consensus 324 VQGYKFNIFYPDLidktk~Pty~i~~~------~~~~dtciirF~AGPPYEDIAFrIVnrEWeys~ 383 (409)
-||--|-|=||+..+ .-.|.|..... +-+..+--|.|-| -|||-|||+|-++|-+.|.
T Consensus 129 q~~L~fQv~Yp~i~~-~~~Pr~rfmssyeq~ve~~dk~~qyLvfaa-ePyE~Iafk~p~~Eid~se 192 (222)
T KOG0227|consen 129 QQGLLFQVNYPEIEE-GIMPRHRFMSSYEQKVEPPDKSWQYLVFAA-EPYENIAFKVPSREIDKSE 192 (222)
T ss_pred ceeeEEEecchhhhh-ccCCcchhhhhhHhhcCCccccceEEEEEe-ccccceeeecCchhhhhcc
Confidence 489999999999877 55777876642 2234577777755 6899999999999988886
No 5
>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]
Probab=91.36 E-value=0.15 Score=48.52 Aligned_cols=57 Identities=32% Similarity=0.571 Sum_probs=42.9
Q ss_pred ceeeeeeecccCCCCCCCCcEEEeecC------CCCCeEEEEEecCCCCcceeeeeecccccccC
Q psy9531 325 QGYKFNIFYPDLIDKNSTPQYFLNTCA------DNQDFAILRFHAGPPYEDIAFKIVNREWEYSY 383 (409)
Q Consensus 325 QGYKFNIFYPDLidktk~Pty~i~~~~------~~~dtciirF~AGPPYEDIAFrIVnrEWeys~ 383 (409)
-|-.|-|=|||-.- ...|.|+|...- -+..|--|.|- --|||-|||+|-|+|-+++.
T Consensus 136 ~Gl~iqvnY~Dd~a-~~~P~yRivs~lEq~ve~~d~~f~yLV~a-~ePyEnIafk~~~~ei~f~s 198 (222)
T COG5246 136 RGLGIQVNYEDDLA-EEMPQYRIVSSLEQNVEEYDESFRYLVFA-CEPYENIAFKFENKEIDFLS 198 (222)
T ss_pred eeeEEEEeccchhh-ccCcceehhhhhhhcchhhcccceEEEEE-eccccceeeecCCCccchhh
Confidence 58889999997543 468999998531 12346667664 57899999999999977765
No 6
>PF10312 Cactin_mid: Conserved mid region of cactin; InterPro: IPR018816 This entry represents the conserved central domain of a family of proteins referred to as cactins. It contains two of three predicted coiled-coil motifs. Most proteins containing this domain also have IPR019134 from INTERPRO at the C-terminal end. Upstream of this domain in Drosophila proteins are a serine-rich region, some non-typical RD motifs and three predicted bipartite nuclear localisation signals, none of which are well-conserved. Cactin associates with IkappaB-cactus as one of the intracellular members of the Rel (NF-kappaB) pathway which is conserved in invertebrates and vertebrates. In mammals, this pathway controls the activities of the immune and inflammatory response genes as well as viral genes, and is critical for cell growth and survival. In Drosophila, the Rel pathway functions in the innate cellular and humoral immune response, in muscle development, and in the establishment of dorsal-ventral polarity in the early embryo [].
Probab=87.60 E-value=1.3 Score=42.13 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=39.7
Q ss_pred chhHHhhcCCHHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHhhh
Q psy9531 142 EPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISIIVEDELHGL 191 (409)
Q Consensus 142 ePy~v~~gLs~~dLEeL~eDIk~y~~LE~~~n~efW~am~vIcedeL~kl 191 (409)
+--.+|.|-|.++|.+|...|+.=+.=..+.+.+||++|+.-..-..+++
T Consensus 135 dI~~il~gKs~~eL~~Le~qI~~KL~s~~~~Dv~YWE~lL~~L~v~kAka 184 (191)
T PF10312_consen 135 DIQKILSGKSYEELEELEQQIKAKLRSGEAIDVEYWESLLKQLKVFKAKA 184 (191)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 34668999999999999999998865555789999999976665555554
No 7
>KOG1029|consensus
Probab=85.28 E-value=24 Score=40.61 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=41.6
Q ss_pred hcCCHHhHHHHHHHHHHHHhhh-c-CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCH
Q psy9531 148 TGLAIKDLEDLLEDIKVYMELE-K-GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTT 225 (409)
Q Consensus 148 ~gLs~~dLEeL~eDIk~y~~LE-~-~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~ 225 (409)
..|...++..|..-|+.+.+-= + .....-|++ .|... .....+...+..-+++.... ..++..-=-
T Consensus 481 ~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~-------qlkq~---q~a~~~~~~~~s~L~aa~~~--ke~irq~ik 548 (1118)
T KOG1029|consen 481 RELMISEIDQLQARIKELQEKLQKLAPEKQELNH-------QLKQK---QSAHKETTQRKSELEAARRK--KELIRQAIK 548 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHHHh---hhhccCcchHHHHHHHHHHH--HHHHHHHHH
Confidence 3467788889999999886522 1 222223332 12111 11111111111223333222 233333345
Q ss_pred HHHHHHHHHHHHHHhc
Q psy9531 226 AQLEALQTQIELKISS 241 (409)
Q Consensus 226 ~eL~~Le~~I~~KL~s 241 (409)
++|++|++.+++||.-
T Consensus 549 dqldelskE~esk~~e 564 (1118)
T KOG1029|consen 549 DQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999999964
No 8
>KOG2370|consensus
Probab=70.72 E-value=8.3 Score=41.78 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=36.3
Q ss_pred chhHHhhcCCHHhHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHH
Q psy9531 142 EPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISIIVEDE 187 (409)
Q Consensus 142 ePy~v~~gLs~~dLEeL~eDIk~y~~LE~~~n~efW~am~vIcede 187 (409)
+--.+|.|-|.++|++|..+|..-+.=-.+.+.+||.+|+--.+..
T Consensus 282 dv~~il~~Ks~~qL~eLe~qieaklrsns~~d~~YWedll~qLk~y 327 (623)
T KOG2370|consen 282 DVRKILAGKSFEQLEELEAQIEAKLRSNSPLDTDYWEDLLNQLKSY 327 (623)
T ss_pred hHHHHhCCcCHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHH
Confidence 3456899999999999999999876544467899999997554444
No 9
>KOG1029|consensus
Probab=62.22 E-value=56 Score=37.77 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 52 KKKKNLCANVKKRRQEREAERAEREE 77 (409)
Q Consensus 52 ~e~~~EiEkvKkRReeRE~Ek~~~EE 77 (409)
+|+++++|--|+--.+||.|+++-||
T Consensus 365 qErk~qlElekqLerQReiE~qrEEe 390 (1118)
T KOG1029|consen 365 QERKAQLELEKQLERQREIERQREEE 390 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544444455555544443
No 10
>PTZ00121 MAEBL; Provisional
Probab=59.44 E-value=48 Score=40.70 Aligned_cols=33 Identities=15% Similarity=0.269 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 50 KKKKKKNLCANVKKRRQEREAERAEREEEMALT 82 (409)
Q Consensus 50 r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~l 82 (409)
|+.+..+=.|..+++++.|++|.++++|++.+.
T Consensus 1134 Rrae~~Rr~EeaRKrEeaRraE~aRreEEaRr~ 1166 (2084)
T PTZ00121 1134 RKAEDARKAEEARKAEDAKRVEIARKAEDARKA 1166 (2084)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445556666666666666655554433
No 11
>KOG2072|consensus
Probab=54.88 E-value=60 Score=37.63 Aligned_cols=54 Identities=20% Similarity=0.310 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy9531 46 KKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQED 99 (409)
Q Consensus 46 ~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRerE~eq~~ew~~kEd 99 (409)
+..+|+.....|+|.-..||+|-++.+++.|+-.++..|..+...+.+-.++.+
T Consensus 795 R~eerk~~~~re~EEEr~Rr~EEe~~ae~~ee~~e~akr~~~eRe~e~~~ak~e 848 (988)
T KOG2072|consen 795 RIEERKQAYYREIEEERARREEEEANAERQEEAAERAKRTEEEREIENRVAKKE 848 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444466678888888888888877777765556666666666666666655
No 12
>smart00774 WRKY DNA binding domain. The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.
Probab=49.89 E-value=25 Score=27.78 Aligned_cols=50 Identities=20% Similarity=0.527 Sum_probs=28.4
Q ss_pred ccccccccccccCCCCCCCCcccceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEE
Q psy9531 302 TGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILR 360 (409)
Q Consensus 302 tGyeWNKYNqTHYD~DNPPPK~VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciir 360 (409)
-||-|-||.|-+.. .||-|.. | |--=+ ++.=.-+=.|+.+.+++.+.++.
T Consensus 3 DGy~WRKYGQK~ik-gs~~pRs---Y-YrCt~----~~~C~a~K~Vq~~~~d~~~~~vt 52 (59)
T smart00774 3 DGYQWRKYGQKVIK-GSPFPRS---Y-YRCTY----SQGCPAKKQVQRSDDDPSVVEVT 52 (59)
T ss_pred CcccccccCcEecC-CCcCcce---E-Eeccc----cCCCCCcccEEEECCCCCEEEEE
Confidence 59999999998776 5566644 3 22222 12223334566665455444443
No 13
>PTZ00121 MAEBL; Provisional
Probab=48.91 E-value=1.2e+02 Score=37.50 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhHHHHHhhhhhhhc
Q psy9531 52 KKKKNLCANVKKRRQEREAERAEREEEMALTQRGK---EAAQFEEWQRQEDQFHLEQARLRSTIRIQ 115 (409)
Q Consensus 52 ~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRer---E~eq~~ew~~kEdeFhL~Qak~RS~IRI~ 115 (409)
.+..++.|..++.+++|.+|.++++++.-++.+.+ +...-.+=...|+.+-++.+++....|..
T Consensus 1154 aE~aRreEEaRr~EEaRraEeArr~EEaRraEE~Rr~EElRraEEaRkaEEaRRlEE~RraEEARra 1220 (2084)
T PTZ00121 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKA 1220 (2084)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555543332222 22222333334445555555554444443
No 14
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=43.03 E-value=40 Score=26.24 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy9531 60 NVKKRRQEREAERAEREEE----MALTQRGKEA 88 (409)
Q Consensus 60 kvKkRReeRE~Ek~~~EEE----~~~lqRerE~ 88 (409)
-|+--++||+.+++..|.| |+||.++|+.
T Consensus 19 ~v~t~~eE~~~dq~~IEkEGevymeR~e~erer 51 (52)
T PF14147_consen 19 AVKTAKEEREIDQEFIEKEGEVYMERMEEERER 51 (52)
T ss_pred HHHHHHHHHHhHHHHHHHhHHHHHHHHHHHhcc
Confidence 3667778888888877776 7777777653
No 15
>KOG1772|consensus
Probab=42.55 E-value=1.3e+02 Score=26.71 Aligned_cols=38 Identities=34% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 49 KKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86 (409)
Q Consensus 49 ~r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRer 86 (409)
++..+++.|.-+-|.+|.--+++.+..|=+.-+++|++
T Consensus 16 K~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~ 53 (108)
T KOG1772|consen 16 KRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREK 53 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777766666655666543
No 16
>PF09736 Bud13: Pre-mRNA-splicing factor of RES complex; InterPro: IPR018609 Bud site selection protein 13, also known as pre-mRNA-splicing factor CWC26, belongs to the pre-mRNA retention and splicing (RES) complex. May also be involved in positioning the proximal bud pole signal [, , ]. The presence of RES subunit homologues in numerous eukaryotes suggests that its function is evolutionarily conserved [].
Probab=40.51 E-value=1.5e+02 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.393 Sum_probs=6.5
Q ss_pred hhhhhcCcchhHH
Q psy9531 24 RMQVQGTGSKVEA 36 (409)
Q Consensus 24 r~~~~~~~~~~~~ 36 (409)
||. +|-.++++.
T Consensus 5 RD~-sGr~id~~~ 16 (145)
T PF09736_consen 5 RDK-SGRKIDIEE 16 (145)
T ss_pred cCC-CCCcCCHHH
Confidence 555 555555553
No 17
>PF10252 PP28: Casein kinase substrate phosphoprotein PP28; InterPro: IPR019380 This domain is a region of 70 residues conserved in proteins from plants to humans and contains a serine/arginine rich motif. In rats the full protein is a casein kinase substrate, and this region contains phosphorylation sites for both cAMP-dependent protein kinase and casein kinase II [].
Probab=39.24 E-value=59 Score=27.45 Aligned_cols=30 Identities=30% Similarity=0.314 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 51 KKKKKNLCANVKKRRQEREAERAEREEEMA 80 (409)
Q Consensus 51 ~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~ 80 (409)
..+....|+.|.-.|++||...+.+++|..
T Consensus 51 T~eakaDLaRLAlIRkqREeaA~kR~aek~ 80 (82)
T PF10252_consen 51 TDEAKADLARLALIRKQREEAAAKREAEKE 80 (82)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367889999999999999999999988853
No 18
>KOG3054|consensus
Probab=37.49 E-value=4e+02 Score=27.14 Aligned_cols=16 Identities=19% Similarity=0.258 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHHHH
Q psy9531 223 KTTAQLEALQTQIELK 238 (409)
Q Consensus 223 Ks~~eL~~Le~~I~~K 238 (409)
-|.++|.+.-+=|+++
T Consensus 257 IS~eEl~AVAkfIkqr 272 (299)
T KOG3054|consen 257 ISMEELAAVAKFIKQR 272 (299)
T ss_pred ecHHHHHHHHHHHHHc
Confidence 3566666666666544
No 19
>KOG0163|consensus
Probab=37.43 E-value=1.9e+02 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 43 KKKKKKKKKKKKKNLCANVKKRRQEREAERAE 74 (409)
Q Consensus 43 ~~~~~~~r~~e~~~EiEkvKkRReeRE~Ek~~ 74 (409)
.-.-+.+|++++..++|.-++||++-|+++..
T Consensus 918 q~~~e~er~rk~qE~~E~ER~rrEaeek~rre 949 (1259)
T KOG0163|consen 918 QQIEELERLRKIQELAEAERKRREAEEKRRRE 949 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 33445666777777777777777766655533
No 20
>PF04889 Cwf_Cwc_15: Cwf15/Cwc15 cell cycle control protein; InterPro: IPR006973 This family represents Cwf15/Cwc15 (from Schizosaccharomyces pombe and Saccharomyces cerevisiae respectively) and their homologues. The function of these proteins is unknown, but they form part of the spliceosome and are thus thought to be involved in mRNA splicing [].; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005681 spliceosomal complex
Probab=35.07 E-value=1e+02 Score=30.55 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 52 KKKKNLCANVKKRRQEREAERAER 75 (409)
Q Consensus 52 ~e~~~EiEkvKkRReeRE~Ek~~~ 75 (409)
..-|+||+|+|+-|++..+.+++.
T Consensus 149 ~~Ll~ELekIKkER~ee~~~~e~~ 172 (244)
T PF04889_consen 149 AALLRELEKIKKERAEEKARKEEE 172 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456889999988777666555443
No 21
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=34.43 E-value=1.8e+02 Score=29.48 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=6.1
Q ss_pred HHHHHHHHhhh
Q psy9531 89 AQFEEWQRQED 99 (409)
Q Consensus 89 eq~~ew~~kEd 99 (409)
++-+.|++||.
T Consensus 305 eeQrK~eeKe~ 315 (321)
T PF07946_consen 305 EEQRKYEEKER 315 (321)
T ss_pred HHHHHHHHHHH
Confidence 34456666654
No 22
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=31.82 E-value=15 Score=35.00 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHH
Q psy9531 224 TTAQLEALQTQI 235 (409)
Q Consensus 224 s~~eL~~Le~~I 235 (409)
|.++|.++-.=|
T Consensus 157 s~eE~~~va~fi 168 (188)
T PF09756_consen 157 SEEEMEAVAKFI 168 (188)
T ss_dssp ------------
T ss_pred cHHHHHHHHHHH
Confidence 444444443333
No 23
>PF01701 PSI_PsaJ: Photosystem I reaction centre subunit IX / PsaJ; InterPro: IPR002615 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. This family consists of the photosystem I reaction centre subunit IX or PsaJ from various organisms including Synechocystis sp. (strain PCC 6803), Pinus thunbergii (Green pine) and Zea mays (Maize). PsaJ (P19443 from SWISSPROT) is a small 4.4kDa, chloroplast encoded, hydrophobic subunit of the photosystem I reaction complex whose function is not yet fully understood []. PsaJ can be cross-linked to PsaF (P12356 from SWISSPROT) and has a single predicted transmembrane domain. It has a proposed role in maintaing PsaF in the correct orientation to allow for fast electron transfer from soluble donor proteins to P700+ [].; GO: 0015979 photosynthesis, 0009522 photosystem I; PDB: 2WSF_J 2WSC_J 2O01_J 2WSE_J 1JB0_J 3PCQ_J 3LW5_J.
Probab=30.09 E-value=14 Score=26.78 Aligned_cols=10 Identities=50% Similarity=1.158 Sum_probs=6.9
Q ss_pred eeeeecccCC
Q psy9531 328 KFNIFYPDLI 337 (409)
Q Consensus 328 KFNIFYPDLi 337 (409)
.||-||||+.
T Consensus 28 EiNRffPD~L 37 (37)
T PF01701_consen 28 EINRFFPDLL 37 (37)
T ss_dssp SSTTTSTS-S
T ss_pred HHHHhCCCcC
Confidence 4788899873
No 24
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=29.91 E-value=2.6e+02 Score=30.15 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 55 KNLCANVKKRRQEREAERAEREEEMALTQRGKE 87 (409)
Q Consensus 55 ~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRerE 87 (409)
..|+...|+-|.++-+|...+-.+.....|+.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~k~~~k~~~~~~~~~~ 358 (429)
T PRK00247 326 HAENAEIKKTRTAEKNEAKARKKEIAQKRRAAE 358 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666664443333334334444333
No 25
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=29.89 E-value=3.9e+02 Score=23.60 Aligned_cols=53 Identities=30% Similarity=0.304 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 34 VEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86 (409)
Q Consensus 34 ~~~~~~~~~~~~~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRer 86 (409)
.+.|..++...+.-+.+..|..+|=+.-+++|-++-.|+..+-||.++...++
T Consensus 33 wekr~~~R~~~~~~K~~ekElKeEKe~er~~r~~~~kerr~~keEkeR~E~~a 85 (108)
T PF03879_consen 33 WEKRMEKRLELKAIKEKEKELKEEKEAERQRRIQRIKERRKRKEEKERYEKMA 85 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55455555555555666666677777777777777766666666666554443
No 26
>PHA00451 protein kinase
Probab=29.50 E-value=3.1e+02 Score=28.45 Aligned_cols=84 Identities=21% Similarity=0.329 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhh--hhhHHHHHhhh
Q psy9531 37 RKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAA----QFEEWQRQED--QFHLEQARLRS 110 (409)
Q Consensus 37 ~~~~~~~~~~~~~r~~e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRerE~e----q~~ew~~kEd--eFhL~Qak~RS 110 (409)
|+..-|.+|++++++..+-.|+ ++-|+++++.++..+-.+|-+-..-.... ...+..+=|+ .|+-.|+ -
T Consensus 266 rkaa~K~Rk~~~k~~~r~ak~l--~~~r~~~~~~~Rne~rA~m~~G~~~w~~~w~~~~n~d~~~~e~~~A~~W~~a---D 340 (362)
T PHA00451 266 RKAAMKRRKRNRKLRARNAKEL--AAMRMEANQIRRNEPRARMLMGDKHWHNAWLHNNNLDFAKLEERAALAWQMA---D 340 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhcchHHHHHhhhhHHHHHHHHccCccHHHHHHHHHHHHhhc---c
Confidence 3444455556666665555553 45566666666644444433322111111 0111111111 1333333 4
Q ss_pred hhhhccCCCChhhHH
Q psy9531 111 TIRIQEGRAKPIDLL 125 (409)
Q Consensus 111 ~IRI~eGRaKpIDlL 125 (409)
.+.|..|++-|||-+
T Consensus 341 rlAIq~G~pL~IDK~ 355 (362)
T PHA00451 341 GLAIQWGKPLPIDKY 355 (362)
T ss_pred hHHHHcCCCCChhHH
Confidence 678999999999954
No 27
>PLN03086 PRLI-interacting factor K; Provisional
Probab=28.87 E-value=3.2e+02 Score=30.51 Aligned_cols=13 Identities=15% Similarity=-0.015 Sum_probs=8.5
Q ss_pred cchhHHhhcCCHH
Q psy9531 141 HEPYTYLTGLAIK 153 (409)
Q Consensus 141 ~ePy~v~~gLs~~ 153 (409)
.=|+-++++|.+.
T Consensus 154 ~lP~wm~~~L~~~ 166 (567)
T PLN03086 154 GLPPHVWSNLFPS 166 (567)
T ss_pred EcCHHHHhhcCCC
Confidence 3567778888643
No 28
>PF13983 YsaB: YsaB-like lipoprotein
Probab=28.74 E-value=24 Score=29.05 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=12.2
Q ss_pred cCCCccccccc-ccccc
Q psy9531 382 SYKRGFRCHDE-TSATL 397 (409)
Q Consensus 382 s~krGFk~~F~-rGi~~ 397 (409)
+++-||-|+|| .|-||
T Consensus 56 ~r~E~FvCSFD~dGqFL 72 (77)
T PF13983_consen 56 ARKEGFVCSFDADGQFL 72 (77)
T ss_pred ccccceEEeECCCCcEE
Confidence 46799999998 56554
No 29
>KOG4364|consensus
Probab=27.75 E-value=3.1e+02 Score=31.43 Aligned_cols=6 Identities=33% Similarity=0.778 Sum_probs=3.6
Q ss_pred CCCCcc
Q psy9531 291 PRKPRY 296 (409)
Q Consensus 291 pRKPry 296 (409)
|++|++
T Consensus 731 ~~~Pk~ 736 (811)
T KOG4364|consen 731 PDVPKT 736 (811)
T ss_pred CCCCcc
Confidence 666654
No 30
>PF11861 DUF3381: Domain of unknown function (DUF3381); InterPro: IPR024576 This uncharacterised domain is found in eukaryotic rRNA methyltransferases like yeast Spb1 and mammalian homologue Ftsj3. Spb1 is required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit [, ].
Probab=27.61 E-value=70 Score=29.62 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=26.6
Q ss_pred CChhhHHHhhcCCccccccccccchhHHh-h-cCCHHhHHHHHHHHHHH
Q psy9531 119 AKPIDLLAKYIGSEAEVDAVEMHEPYTYL-T-GLAIKDLEDLLEDIKVY 165 (409)
Q Consensus 119 aKpIDlLAk~I~~~~d~~dvel~ePy~v~-~-gLs~~dLEeL~eDIk~y 165 (409)
..|||+|+.+- .|.|.+-+..+ + -+|.+++.+|..||++.
T Consensus 34 ~dpi~~L~~~~-------~i~fdd~~~~i~~h~~TT~EIk~~c~DLKVL 75 (159)
T PF11861_consen 34 EDPIDLLGSAN-------EIVFDDASKEILKHPLTTEEIKECCKDLKVL 75 (159)
T ss_pred CcHHHHHHHcC-------eeeecchHHHHHcCCCCcHHHHHHHHHHHhc
Confidence 37888888643 22223323333 2 26999999999999998
No 31
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.84 E-value=74 Score=30.43 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=26.2
Q ss_pred hhHHHHHHhhcCCCCHHHH---HHHHHHHHHHHhc
Q psy9531 210 ESVAQDVASVFKGKTTAQL---EALQTQIELKISS 241 (409)
Q Consensus 210 ~sV~~dI~~il~gKs~~eL---~~Le~~I~~KL~s 241 (409)
..|..-|..+|++||+++| ..|+.+|..+|++
T Consensus 127 pqIRD~Ii~~LssKt~~eL~Gk~~LKeEI~~rIN~ 161 (181)
T PRK06654 127 VRLKDIIREYFSQKTGQELKNESQIKAEIKARINS 161 (181)
T ss_pred HHHHHHHHHHHHhCCHHHHcCHHHHHHHHHHHHHH
Confidence 4588899999999999999 6777777777764
No 32
>KOG2002|consensus
Probab=26.54 E-value=2.8e+02 Score=32.93 Aligned_cols=45 Identities=22% Similarity=0.285 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhh
Q psy9531 58 CANVKKRRQEREAERAEREEEMALTQRG---KEAAQFEEWQRQEDQFH 102 (409)
Q Consensus 58 iEkvKkRReeRE~Ek~~~EEE~~~lqRe---rE~eq~~ew~~kEdeFh 102 (409)
.++.+.-|+++++|+++|-+|.++..|+ +++++|.+-.+....|.
T Consensus 841 q~~~~~a~~~~~~ee~~r~~eee~~~r~~l~~qr~e~~e~tk~~~~~~ 888 (1018)
T KOG2002|consen 841 QEKEEEALIEKELEEARRKEEEEKARREKLEKQREEYRERTKEILKLP 888 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566777777777777776666665544 44445555555555554
No 33
>PRK07945 hypothetical protein; Provisional
Probab=26.33 E-value=2.2e+02 Score=29.06 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhhhc-C--CchHHHHHHHHHHHHH---HhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCHHHHHH
Q psy9531 157 DLLEDIKVYMELEK-G--ENEAYWNDISIIVEDE---LHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEA 230 (409)
Q Consensus 157 eL~eDIk~y~~LE~-~--~n~efW~am~vIcede---L~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~~eL~~ 230 (409)
.+.+.|-.++++.+ . +-+.|=+|..+|-... ++.+. ..+ ....=-||-.++++.|..++.+-+...|++
T Consensus 5 ~~l~~~a~lle~~~~n~frv~ayr~aa~~~~~~~~~~~~~~~---~~g--~l~~~~giG~~~a~~i~e~~~tg~~~~l~~ 79 (335)
T PRK07945 5 AALRRIAFLLERARADTYRVRAFRRAADVVEALDAAERARRA---RAG--SLTSLPGIGPKTAKVIAQALAGRVPDYLAE 79 (335)
T ss_pred HHHHHHHHHHHHcCCChhhHHHHHHHHHHHHhcChhHHHHHH---hcC--CcccCCCcCHHHHHHHHHHHhcCCHHHHHH
Confidence 34556777777764 1 3356888877776432 43332 111 111223788999999999999999999999
Q ss_pred HHHHHH
Q psy9531 231 LQTQIE 236 (409)
Q Consensus 231 Le~~I~ 236 (409)
|+.++.
T Consensus 80 l~~~~~ 85 (335)
T PRK07945 80 LRADAE 85 (335)
T ss_pred HHHhhc
Confidence 999983
No 34
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=25.96 E-value=4.2e+02 Score=24.89 Aligned_cols=11 Identities=9% Similarity=0.138 Sum_probs=5.4
Q ss_pred chhhHhhhhhh
Q psy9531 18 QRLVYARMQVQ 28 (409)
Q Consensus 18 ~~~~~~r~~~~ 28 (409)
.+..|-|-+..
T Consensus 29 ~~~s~LR~~ta 39 (157)
T PF15236_consen 29 SKTSFLRGMTA 39 (157)
T ss_pred cccCccccccc
Confidence 35566554433
No 35
>PF11056 UvsY: Recombination, repair and ssDNA binding protein UvsY; InterPro: IPR021289 UvsY protein enhances the rate of single-stranded-DNA-dependent ATP hydrolysis by UvsX protein. The enhancement of ATP hydrolysis by UvsY protein is shown to result from the ability of UvsY protein to increase the affinity of UvsX protein for single-stranded DNA [].
Probab=25.94 E-value=1.3e+02 Score=27.21 Aligned_cols=52 Identities=23% Similarity=0.392 Sum_probs=36.3
Q ss_pred HHHHHHHhhhc-----CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCC
Q psy9531 160 EDIKVYMELEK-----GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGK 223 (409)
Q Consensus 160 eDIk~y~~LE~-----~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gK 223 (409)
++|++|++-|. ..-.+||..|+..|+.-|..++. .|-+=.=.-|.+++.+|+
T Consensus 73 ~eik~~i~aD~ev~ki~~ki~y~~~~l~f~~~~L~~I~~------------Rgf~IKnaIe~rkf~~G~ 129 (129)
T PF11056_consen 73 EEIKMYIEADEEVIKINTKIQYIDQMLEFLESALDQINN------------RGFQIKNAIEWRKFEAGK 129 (129)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------cchHHHHHHHHHHHHCCC
Confidence 47888888776 46678999999999998888763 122323334666666664
No 36
>KOG0345|consensus
Probab=24.19 E-value=3e+02 Score=30.50 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=17.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQ 66 (409)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~r~~e~~~EiEkvKkRRe 66 (409)
+++++-.+=|.||+.+++++..+...|..+-|+||+
T Consensus 469 ~id~~~ikykdkkrEk~Rq~~l~~~~~~~~~kkr~e 504 (567)
T KOG0345|consen 469 AIDFSEIKYKDKKREKQRQQKLKVRKEAKQEKKRRE 504 (567)
T ss_pred CcchhhhcccchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344553333334444444444555666666666665
No 37
>KOG4709|consensus
Probab=23.84 E-value=2.6e+02 Score=27.43 Aligned_cols=12 Identities=8% Similarity=0.257 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q psy9531 49 KKKKKKKNLCAN 60 (409)
Q Consensus 49 ~r~~e~~~EiEk 60 (409)
+|+..++.+|++
T Consensus 49 eRrK~Aqeqike 60 (217)
T KOG4709|consen 49 ERRKAAQEQIKE 60 (217)
T ss_pred HHHHHHHHHHHH
Confidence 444444444544
No 38
>KOG2507|consensus
Probab=23.67 E-value=1e+02 Score=33.44 Aligned_cols=61 Identities=18% Similarity=0.198 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Q psy9531 38 KKKKKKKKKKKKKKKKKKNLCAN-VKKRRQEREAERAE---REEEMALTQRGKEAAQFEEWQRQE 98 (409)
Q Consensus 38 ~~~~~~~~~~~~r~~e~~~EiEk-vKkRReeRE~Ek~~---~EEE~~~lqRerE~eq~~ew~~kE 98 (409)
+-|+++.|+..++.++...|+++ .++|+..+|.-+.. -|+..-+|+.++.++.-++-.++|
T Consensus 203 ltk~leqkr~Ek~kee~~hekeee~~rr~agkE~~~~~a~~~ee~tkrm~eqrkrer~e~~aare 267 (506)
T KOG2507|consen 203 LTKNLEQKRVEKTKEEVEHEKEEEPLRRQAGKEPIRPTAPGTEENTKRMREQRKRERKEGTAARE 267 (506)
T ss_pred HHhhccccchhhhHHHHHHHhhhhhHhhhhcccccccccccchHHHHHHHHHHHHHHHhhHHHHH
Confidence 44555555555566666666655 34444555533333 344555555445444444444444
No 39
>PRK02733 photosystem I reaction center subunit IX; Provisional
Probab=21.71 E-value=18 Score=26.95 Aligned_cols=9 Identities=67% Similarity=1.464 Sum_probs=6.8
Q ss_pred eeeecccCC
Q psy9531 329 FNIFYPDLI 337 (409)
Q Consensus 329 FNIFYPDLi 337 (409)
||-||||+.
T Consensus 29 iNRffPD~L 37 (42)
T PRK02733 29 FNRFFPDLL 37 (42)
T ss_pred HHHhCchHh
Confidence 677888874
No 40
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=21.49 E-value=1.8e+02 Score=26.02 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy9531 74 EREEEMALTQRGKEAAQFEEWQRQ 97 (409)
Q Consensus 74 ~~EEE~~~lqRerE~eq~~ew~~k 97 (409)
..++-+++|+|.|+.++|.++.+.
T Consensus 89 eF~~Fl~rLR~AKDk~EFD~FM~~ 112 (115)
T PF11014_consen 89 EFEDFLERLRRAKDKEEFDQFMAE 112 (115)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHh
Confidence 678899999999999999988753
No 41
>CHL00105 psaJ photosystem I subunit IX
Probab=21.02 E-value=20 Score=26.72 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=6.8
Q ss_pred eeeecccCC
Q psy9531 329 FNIFYPDLI 337 (409)
Q Consensus 329 FNIFYPDLi 337 (409)
||-||||+.
T Consensus 29 iNRffPD~L 37 (42)
T CHL00105 29 INRFFPDAL 37 (42)
T ss_pred HHHhCChhh
Confidence 678888874
No 42
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=20.20 E-value=7.3e+02 Score=23.35 Aligned_cols=52 Identities=21% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q psy9531 53 KKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLE 104 (409)
Q Consensus 53 e~~~EiEkvKkRReeRE~Ek~~~EEE~~~lqRerE~eq~~ew~~kEdeFhL~ 104 (409)
-|-.+=.++...|++|.+..+...++.....-.+.....++|..+-+...+.
T Consensus 80 ~N~~~N~~~~~~Re~Rl~~e~e~~~~~~l~~~~~~~~~~~~~~~~~e~~V~~ 131 (170)
T PF14943_consen 80 WNEEWNAEIAELREERLAKEREEREEEILERLERKEEEEEERKERKEEEVRQ 131 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666777777655433333322222233334555666655555444
Done!