Query psy9531
Match_columns 409
No_of_seqs 141 out of 171
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:00:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dgw_C PRE-mRNA-splicing facto 95.5 0.021 7.3E-07 53.6 6.5 61 323-384 114-188 (231)
2 2ayd_A WRKY transcription fact 29.1 56 0.0019 25.9 4.0 53 301-363 15-67 (76)
3 1wj2_A Probable WRKY transcrip 22.1 58 0.002 26.0 2.9 55 299-363 16-70 (78)
4 1xcr_A Hypothetical protein PT 22.0 27 0.00093 34.6 1.1 31 333-368 39-69 (316)
5 1jb0_J Photosystem 1 reaction 18.4 18 0.00061 25.8 -0.8 9 329-337 29-37 (41)
6 2k48_A Nucleoprotein; viral pr 17.6 1.6E+02 0.0053 24.9 4.6 20 146-165 25-47 (107)
7 3bx1_D BASI, alpha-amylase/sub 17.2 1.4E+02 0.0048 26.8 4.7 76 324-403 75-161 (181)
8 2wsc_J PSAJ, PSI-J, photosyste 16.2 27 0.00092 25.3 -0.3 10 328-337 28-37 (44)
9 3g2b_A Coenzyme PQQ synthesis 16.0 60 0.0021 26.2 1.7 34 371-404 3-40 (95)
10 2lw9_A Unconventionnal myosin- 14.8 2.2E+02 0.0076 21.0 4.3 31 57-89 14-44 (51)
No 1
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.021 Score=53.57 Aligned_cols=61 Identities=18% Similarity=0.235 Sum_probs=46.7
Q ss_pred ccceeeeeeecccCC---------CCCCCCcEEEeecCC-----CCCeEEEEEecCCCCcceeeeeecccccccCC
Q psy9531 323 IVQGYKFNIFYPDLI---------DKNSTPQYFLNTCAD-----NQDFAILRFHAGPPYEDIAFKIVNREWEYSYK 384 (409)
Q Consensus 323 ~VQGYKFNIFYPDLi---------dktk~Pty~i~~~~~-----~~dtciirF~AGPPYEDIAFrIVnrEWeys~k 384 (409)
--+|.=|.|-||+=| ...-.|.++|-..-. -.+.--|. .|.-|||-|||+|-|+|=+.+.+
T Consensus 114 gQ~GLLFQVdYPEeIk~~~~~~~~~egi~PrhRIMSAyEQrVE~PKd~QYLV-IAAEPYETIAFKIPNrEIDk~e~ 188 (231)
T 4dgw_C 114 GSVGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLV-IAYEPFENIAIELPPNEILFSEN 188 (231)
T ss_dssp CBCCEEEEEECCCSSSTTSCCSCSSTTCCCEEEEEETTCCSSCCCCCCEEEE-EECSSSCCBCCEECSSCSSCCSC
T ss_pred CCeeEEEEEECChhhhhcccccccCCCCCcCEEEECHHHhcccCCCCCEEEE-EEeCCCCCceeEcCChhhccccc
Confidence 358999999999854 456799999986421 13444444 47789999999999999998874
No 2
>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}
Probab=29.13 E-value=56 Score=25.94 Aligned_cols=53 Identities=19% Similarity=0.545 Sum_probs=33.5
Q ss_pred cccccccccccccCCCCCCCCcccceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEEEec
Q psy9531 301 HTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHA 363 (409)
Q Consensus 301 ~tGyeWNKYNqTHYD~DNPPPK~VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciirF~A 363 (409)
--||-|-||=|-+=. .||-|. +| |---+| .=.-+=.|+.+.+++.+.++-..|
T Consensus 15 ~DGy~WRKYGQK~ik-gs~~PR---sY-YrCt~~-----gC~a~K~Ver~~~d~~~~~~tY~G 67 (76)
T 2ayd_A 15 NDGYRWRKYGQKSVK-GSPYPR---SY-YRCSSP-----GCPVKKHVERSSHDTKLLITTYEG 67 (76)
T ss_dssp CCSSCEEEEEEECCT-TCSSCE---EE-EEECST-----TCCCEEEEEECSSSTTEEEEEEES
T ss_pred CCCchhhhCcccccC-CCCCce---eE-eEcCCC-----CCCceeeEEEECCCCCEEEEEEcc
Confidence 469999999998754 456664 44 444443 223334577776667666666554
No 3
>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*
Probab=22.12 E-value=58 Score=26.00 Aligned_cols=55 Identities=20% Similarity=0.507 Sum_probs=32.7
Q ss_pred cccccccccccccccCCCCCCCCcccceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEEEec
Q psy9531 299 RVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHA 363 (409)
Q Consensus 299 RV~tGyeWNKYNqTHYD~DNPPPK~VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciirF~A 363 (409)
-+--||-|-||=|-+=. .||-|. +| |.--+| .=.-+=.|+.+.+++.+.++-..+
T Consensus 16 ~~dDGy~WRKYGQK~ik-gs~~PR---sY-YrCt~~-----gC~a~K~Ver~~~d~~~~~~tY~G 70 (78)
T 1wj2_A 16 LLDDGYRWRKYGQKVVK-GNPYPR---SY-YKCTTP-----GCGVRKHVERAATDPKAVVTTYEG 70 (78)
T ss_dssp CCCSSSCBCCCEEECCT-TCSSCE---EE-EEEECS-----SCEEEEEEEEETTTTSEEEEEEES
T ss_pred cCCCCchhhhCcccccC-CCcCee---EE-eecCcC-----CCCcEeeEEEEcCCCCEEEEEEee
Confidence 34579999999997743 456564 34 444443 112233467766666666665554
No 4
>1xcr_A Hypothetical protein PTD012; structural genomics, zinc-containing fold, splice variant, A buffer, metal binding protein; 1.70A {Homo sapiens} SCOP: d.290.1.2
Probab=21.97 E-value=27 Score=34.57 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.8
Q ss_pred cccCCCCCCCCcEEEeecCCCCCeEEEEEecCCCCc
Q psy9531 333 YPDLIDKNSTPQYFLNTCADNQDFAILRFHAGPPYE 368 (409)
Q Consensus 333 YPDLidktk~Pty~i~~~~~~~dtciirF~AGPPYE 368 (409)
=||| +++| |.+...+-.+++.|+-. |||||-
T Consensus 39 CPDL---~~~P-f~l~~~GL~G~~~i~dv-GG~pyL 69 (316)
T 1xcr_A 39 CPDL---TKEP-FTFPVKGICGKTRIAEV-GGVPYL 69 (316)
T ss_dssp CCCT---TSTT-TCCSSSCCBSSCEEEEE-ECGGGT
T ss_pred CCCC---CCCC-ccCcccCCCCCCeEEEe-CCcccc
Confidence 3888 6677 88887777778888777 999996
No 5
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=18.42 E-value=18 Score=25.81 Aligned_cols=9 Identities=78% Similarity=1.564 Sum_probs=6.6
Q ss_pred eeeecccCC
Q psy9531 329 FNIFYPDLI 337 (409)
Q Consensus 329 FNIFYPDLi 337 (409)
||-||||+.
T Consensus 29 iNRffPD~L 37 (41)
T 1jb0_J 29 FNRFYPDLL 37 (41)
T ss_dssp HHHHSCCCS
T ss_pred HHHhCcccc
Confidence 677888874
No 6
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=17.63 E-value=1.6e+02 Score=24.93 Aligned_cols=20 Identities=30% Similarity=0.684 Sum_probs=16.2
Q ss_pred HhhcC---CHHhHHHHHHHHHHH
Q psy9531 146 YLTGL---AIKDLEDLLEDIKVY 165 (409)
Q Consensus 146 v~~gL---s~~dLEeL~eDIk~y 165 (409)
||.|+ +..+|++|+++|+.+
T Consensus 25 ~~~~~~~~tM~~ieeLQ~Ei~~~ 47 (107)
T 2k48_A 25 YFQGIDPFTMSTLQELQENITAH 47 (107)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHH
T ss_pred hhhccccccHHHHHHHHHHHHHH
Confidence 45554 789999999999877
No 7
>3bx1_D BASI, alpha-amylase/subtilisin inhibitor; complex (proteinase/inhibitor) enzyme inhibition, savinase, barley alpha-amylase/subtilisin inhibitor; 1.85A {Hordeum vulgare} SCOP: b.42.4.1 PDB: 1ava_C 2iwt_B*
Probab=17.23 E-value=1.4e+02 Score=26.79 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=42.1
Q ss_pred cceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEEEecC---CCCcce--eeeeecccccccCCCcccccc------c
Q psy9531 324 VQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHAG---PPYEDI--AFKIVNREWEYSYKRGFRCHD------E 392 (409)
Q Consensus 324 VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciirF~AG---PPYEDI--AFrIVnrEWeys~krGFk~~F------~ 392 (409)
--+--+||-|..----..++.|+|..+......+| -++| .|++.+ -|||..-+...+ .+||-+| +
T Consensus 75 ~est~lnI~F~~~~~C~~st~WkV~~d~~~~~~~V--~tGg~~g~~~~~~~~~FkIek~~~~~~--~~YKL~~C~~~C~d 150 (181)
T 3bx1_D 75 RLSTDVRISFRAYTTCLQSTEWHIDSELAAGRRHV--ITGPVKDPSPSGRENAFRIEKYSGAEV--HEYKLMSCGDWCQD 150 (181)
T ss_dssp BTTCCEEEEECCEETTCSCCBCEECCTTSSBCCBE--ECSCCSSCCTTCCTTCEEEEECTTSCT--TCEEEEEESSSEEE
T ss_pred ecCccEEEEeCCCCcCCCCCEEEEeccCccccEEE--EECCcCCCCccccCceEEEEEcCCCCc--CceEEEEECCccCc
Confidence 34556788774211223577899965322222222 2343 354444 499986554322 3577555 7
Q ss_pred ccccccCcccc
Q psy9531 393 TSATLDSTGLC 403 (409)
Q Consensus 393 rGi~~~~~~~~ 403 (409)
=||+.|..|.-
T Consensus 151 vGi~~d~~g~r 161 (181)
T 3bx1_D 151 LGVFRDLKGGA 161 (181)
T ss_dssp CEEECCSSSSC
T ss_pred ceEEECCCCcE
Confidence 78888766643
No 8
>2wsc_J PSAJ, PSI-J, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_J* 2wsf_J* 2o01_J* 3lw5_J*
Probab=16.21 E-value=27 Score=25.25 Aligned_cols=10 Identities=40% Similarity=0.986 Sum_probs=8.1
Q ss_pred eeeeecccCC
Q psy9531 328 KFNIFYPDLI 337 (409)
Q Consensus 328 KFNIFYPDLi 337 (409)
.+|-||||+.
T Consensus 28 EiNRfFPD~L 37 (44)
T 2wsc_J 28 EINRFFPDAL 37 (44)
T ss_dssp SSTTTSCCCS
T ss_pred HHHHhCchHh
Confidence 4788999985
No 9
>3g2b_A Coenzyme PQQ synthesis protein D; helix-turn-helix, PQQ biosynthesis, biosynthetic protein; 1.66A {Xanthomonas campestris PV}
Probab=15.98 E-value=60 Score=26.19 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=25.2
Q ss_pred eeeeecccccccCCCccccccc--cc--ccccCccccc
Q psy9531 371 AFKIVNREWEYSYKRGFRCHDE--TS--ATLDSTGLCR 404 (409)
Q Consensus 371 AFrIVnrEWeys~krGFk~~F~--rG--i~~~~~~~~~ 404 (409)
|-..|+.++-..-.+|||.+|| +| |++..+||+.
T Consensus 3 ~~~~~~~~~~p~l~~~~rl~~d~~~~~~VlL~peg~i~ 40 (95)
T 3g2b_A 3 AMSTISRDSCPALRAGVRLQHDRARDQWVLLAPERVVE 40 (95)
T ss_dssp ---CCCTTCCCCCCTTCEEEEEGGGTEEEEECCCCCCC
T ss_pred hhccCCCcCCceeCCCeEEEEeccCCcEEEECCCceee
Confidence 3455667777778899999997 56 7999999874
No 10
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=14.83 E-value=2.2e+02 Score=20.96 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9531 57 LCANVKKRRQEREAERAEREEEMALTQRGKEAA 89 (409)
Q Consensus 57 EiEkvKkRReeRE~Ek~~~EEE~~~lqRerE~e 89 (409)
|||.+.+.+++-+ -.+-+..+.++++.++++
T Consensus 14 EIE~Lqrqke~~~--~~L~e~s~~eL~~~RD~E 44 (51)
T 2lw9_A 14 EIEDLQRMKEQQE--LSLTEASLQKLQERRDQE 44 (51)
T ss_dssp HHHHHHHHHHHHH--HHHCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHhHhHHHHHHHHHHHH
Confidence 4555444433321 223334455666666654
Done!