Query psy9531
Match_columns 409
No_of_seqs 141 out of 171
Neff 4.5
Searched_HMMs 13730
Date Fri Aug 16 22:01:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9531.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/9531hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wj2a_ g.79.1.1 (A:) WRKY DNA 32.4 14 0.001 27.3 2.9 13 300-312 10-22 (71)
2 d1fs1b1 a.157.1.1 (B:86-140) C 21.7 29 0.0021 23.9 2.8 25 207-231 29-53 (55)
3 d1nexa1 a.157.1.1 (A:116-185) 20.7 30 0.0022 24.9 2.8 25 207-231 30-54 (70)
4 d1sxjb2 c.37.1.20 (B:7-230) Re 20.6 8.3 0.0006 31.9 -0.5 11 284-294 4-14 (224)
5 d2fmpa1 a.60.6.1 (A:10-91) DNA 18.7 77 0.0056 22.8 4.8 74 154-233 5-81 (82)
6 d1jmsa1 a.60.6.1 (A:148-242) T 17.5 57 0.0041 24.3 3.9 72 155-232 21-94 (95)
7 d1eyla_ b.42.4.1 (A:) chymotry 17.3 52 0.0038 27.4 4.0 75 323-402 71-159 (179)
8 d1sxje2 c.37.1.20 (E:4-255) Re 17.1 18 0.0013 29.7 0.9 9 285-293 1-9 (252)
9 d1sxja2 c.37.1.20 (A:295-547) 16.4 12 0.00089 31.0 -0.4 10 284-293 3-12 (253)
10 d1rrza_ a.7.10.1 (A:) Glycogen 15.8 28 0.002 25.0 1.5 17 22-38 18-34 (66)
No 1
>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=32.37 E-value=14 Score=27.28 Aligned_cols=13 Identities=38% Similarity=1.101 Sum_probs=10.8
Q ss_pred ccccccccccccc
Q psy9531 300 VHTGFEWNKYNQT 312 (409)
Q Consensus 300 V~tGyeWNKYNqT 312 (409)
+--||-|-||=|-
T Consensus 10 ~dDGy~WRKYGQK 22 (71)
T d1wj2a_ 10 LDDGYRWRKYGQK 22 (71)
T ss_dssp CCSSSCBCCCEEE
T ss_pred CCCCcEecccCce
Confidence 4569999999994
No 2
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.75 E-value=29 Score=23.90 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=19.1
Q ss_pred cchhhHHHHHHhhcCCCCHHHHHHH
Q psy9531 207 GIHESVAQDVASVFKGKTTAQLEAL 231 (409)
Q Consensus 207 gi~~sV~~dI~~il~gKs~~eL~~L 231 (409)
|+..-...-|..+.+|||.+|+-++
T Consensus 29 ~Lldl~c~~vA~~ikgKt~eeiR~~ 53 (55)
T d1fs1b1 29 GLLDVTCKTVANMIKGKTPEEIRKT 53 (55)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3455566788899999999998654
No 3
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.70 E-value=30 Score=24.86 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=18.9
Q ss_pred cchhhHHHHHHhhcCCCCHHHHHHH
Q psy9531 207 GIHESVAQDVASVFKGKTTAQLEAL 231 (409)
Q Consensus 207 gi~~sV~~dI~~il~gKs~~eL~~L 231 (409)
|+......-|..+++|||.+|+.++
T Consensus 30 ~Ll~l~c~~vA~~ikgkt~eeiR~~ 54 (70)
T d1nexa1 30 PLLDAGCKVVAEMIRGRSPEEIRRT 54 (70)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHH
Confidence 4455566788899999999987554
No 4
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.61 E-value=8.3 Score=31.94 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=9.1
Q ss_pred cccccCCCCCC
Q psy9531 284 LWSDKYRPRKP 294 (409)
Q Consensus 284 ~W~dKyrpRKP 294 (409)
.|.+||||++-
T Consensus 4 pw~eKyrP~~~ 14 (224)
T d1sxjb2 4 PWVEKYRPQVL 14 (224)
T ss_dssp CHHHHTCCSSG
T ss_pred chHhHhCCCCH
Confidence 49999998764
No 5
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.69 E-value=77 Score=22.84 Aligned_cols=74 Identities=14% Similarity=0.270 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhhc---CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCHHHHHH
Q psy9531 154 DLEDLLEDIKVYMELEK---GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEA 230 (409)
Q Consensus 154 dLEeL~eDIk~y~~LE~---~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~~eL~~ 230 (409)
++-+++..+..+++.-. -+...|..|..+|-...- .+...+. ...--||-.++...|..++..-+..+|++
T Consensus 5 ~i~~~L~ela~l~~~~~~~~fr~~AY~~Aa~~i~~l~~-~i~~~~~-----l~~i~GIGk~ia~kI~E~~~TG~~~~le~ 78 (82)
T d2fmpa1 5 GITDMLTELANFEKNVSQAIHKYNAYRKAASVIAKYPH-KIKSGAE-----AKKLPGVGTKIAEKIDEFLATGKLRKLEK 78 (82)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHCSS-CCCCHHH-----HHTSTTCCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCCc-ccCCHHH-----HhcCCCccHHHHHHHHHHHHhCChHHHHH
Confidence 44555555555544322 245579988877653210 0000000 01123788899999999999888999998
Q ss_pred HHH
Q psy9531 231 LQT 233 (409)
Q Consensus 231 Le~ 233 (409)
|..
T Consensus 79 l~~ 81 (82)
T d2fmpa1 79 IRQ 81 (82)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 6
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.49 E-value=57 Score=24.31 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhc--CCchHHHHHHHHHHHHHHhhhhhhhhcCCCCccccccchhhHHHHHHhhcCCCCHHHHHHHH
Q psy9531 155 LEDLLEDIKVYMELEK--GENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQ 232 (409)
Q Consensus 155 LEeL~eDIk~y~~LE~--~~n~efW~am~vIcedeL~kl~~~e~~~~~~~~~~~gi~~sV~~dI~~il~gKs~~eL~~Le 232 (409)
+-+.++.+..+.++.. -+-..|..|+.+|-.... .+.... + ...-.||-.++...|..++..-+.++|++|.
T Consensus 21 i~~~L~~la~~~e~~g~~fr~~AY~rAa~~i~~l~~-~i~~~~----~-l~~i~GIGk~i~~kI~Eil~tG~~~~lE~l~ 94 (95)
T d1jmsa1 21 FTDALDILAENDELRENEGSCLAFMRASSVLKSLPF-PITSMK----D-TEGIPCLGDKVKSIIEGIIEDGESSEAKAVL 94 (95)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTCSS-CCCSGG----G-GTTCSSCCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCc-ccCCHH----H-HHhccchhHHHHHHHHHHHHHCCcHHHHHhh
Confidence 3444444555555554 234468888866653321 011000 0 1122478899999999999988899998875
No 7
>d1eyla_ b.42.4.1 (A:) chymotrypsin inhibitor WCI {Winged bean (Psophocarpus tetragonolobus) [TaxId: 3891]}
Probab=17.31 E-value=52 Score=27.42 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=46.7
Q ss_pred ccceeeeeeecccCCCCCCCCcEEEeecCCCCCeEEEEEecCCCCc--ceeeeeecccccccCCCcccccc---------
Q psy9531 323 IVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHAGPPYE--DIAFKIVNREWEYSYKRGFRCHD--------- 391 (409)
Q Consensus 323 ~VQGYKFNIFYPDLidktk~Pty~i~~~~~~~dtciirF~AGPPYE--DIAFrIVnrEWeys~krGFk~~F--------- 391 (409)
|.-+.-+||=+..-.....++.|+|... ...++. ++.+|+--. .-.|||..-+.+.. .+||-+|
T Consensus 71 I~e~t~lnI~F~~~~~C~~st~W~v~~~--~~~~~~-~~~~~~~~~~~~~~FkIek~~~~~~--~~YKL~~Cp~~~~~~~ 145 (179)
T d1eyla_ 71 IPRGSLVALGFANPPSCAASPWWTVVDS--PQGPAV-KLSQQKLPEKDILVFKFEKVSHSNI--HVYKLLYCQHDEEDVK 145 (179)
T ss_dssp CBTTSCEEEEESSCCTTSSSSBCEEECC--TTCCEE-ECCSSCCCGGGTSCEEEEECSSCSS--CCEEEEEEEECSSSEE
T ss_pred EecCcEEEEEecCCCccCCcceEEEccc--CCceEE-EEcCCCCCCcccccEEEEEccCCCC--CcEEEEECCCCCCCcc
Confidence 4457778887776666667889999743 233332 344443323 34699998665432 3566555
Q ss_pred ---cccccccCccc
Q psy9531 392 ---ETSATLDSTGL 402 (409)
Q Consensus 392 ---~rGi~~~~~~~ 402 (409)
+-||+.|..|.
T Consensus 146 ~c~~vGi~~d~~g~ 159 (179)
T d1eyla_ 146 CDQYIGIHRDRNGN 159 (179)
T ss_dssp EEEEEEEEECTTCC
T ss_pred ccceEEEEECCCCc
Confidence 56888887775
No 8
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=17.08 E-value=18 Score=29.71 Aligned_cols=9 Identities=67% Similarity=1.627 Sum_probs=8.3
Q ss_pred ccccCCCCC
Q psy9531 285 WSDKYRPRK 293 (409)
Q Consensus 285 W~dKyrpRK 293 (409)
|.+||||++
T Consensus 1 W~eky~P~~ 9 (252)
T d1sxje2 1 WVDKYRPKS 9 (252)
T ss_dssp CTTTTCCCS
T ss_pred CCcccCCCC
Confidence 999999986
No 9
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=16.42 E-value=12 Score=30.99 Aligned_cols=10 Identities=50% Similarity=1.178 Sum_probs=8.7
Q ss_pred cccccCCCCC
Q psy9531 284 LWSDKYRPRK 293 (409)
Q Consensus 284 ~W~dKyrpRK 293 (409)
+|.|||||+.
T Consensus 3 lW~eky~P~~ 12 (253)
T d1sxja2 3 LWTVKYAPTN 12 (253)
T ss_dssp CHHHHTCCSS
T ss_pred ccccCcCCCC
Confidence 7999999875
No 10
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=15.84 E-value=28 Score=25.02 Aligned_cols=17 Identities=29% Similarity=0.483 Sum_probs=14.7
Q ss_pred HhhhhhhcCcchhHHHH
Q psy9531 22 YARMQVQGTGSKVEARK 38 (409)
Q Consensus 22 ~~r~~~~~~~~~~~~~~ 38 (409)
||||+-+|.+++|.|-.
T Consensus 18 FARM~aeG~~vDi~Avt 34 (66)
T d1rrza_ 18 FARMHAEGRPVDILAVT 34 (66)
T ss_dssp HHHHHHHTCCCCHHHHH
T ss_pred HHHHhccCCcccHHHHh
Confidence 49999999999998644
Done!