RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy9531
(409 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 55/328 (16%), Positives = 101/328 (30%), Gaps = 121/328 (36%)
Query: 121 PIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAI---KDLEDLLEDIKVYMELEKGENEAYW 177
P +L + G+ + +T +AI E ++ + + ++
Sbjct: 260 PGELRSYLKGATGHSQGL--------VTAVAIAETDSWESFFVSVRKAITV------LFF 305
Query: 178 NDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQL-------EA 230
I G+R E ++ L S+ +D +G + L E
Sbjct: 306 -----I------GVRCYEAYPNTSLP------PSILEDSLENNEGVPSPMLSISNLTQEQ 348
Query: 231 LQTQIE-----LKISSKTE----N-IDN-VITAEEKALQ------REARKGMGGDEAEFS 273
+Q + L + E N N V++ ++L R+A+ G D++
Sbjct: 349 VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRI- 407
Query: 274 VESLLDPQVYLWSDKYRPRKPRYFNR-------VHTGFEWNKYNQTHYDMDNPPPKIVQ- 325
+ RK ++ NR H +H + I +
Sbjct: 408 --------------PFSERKLKFSNRFLPVASPFH----------SHL-LVPASDLINKD 442
Query: 326 --GYKFNIFYPDLIDKNSTPQYFLNTCADNQDFAILRFHAGPPYEDIAFKIVNR--EWEY 381
+ D+ P Y +T D D LR +G E I I+ +WE
Sbjct: 443 LVKNNVSFNAKDI----QIPVY--DT-FDGSD---LRVLSGSISERIVDCIIRLPVKWET 492
Query: 382 SYKRGFRCHDETSAT--LD-----STGL 402
+ + AT LD ++GL
Sbjct: 493 T--------TQFKATHILDFGPGGASGL 512
Score = 43.9 bits (103), Expect = 1e-04
Identities = 36/217 (16%), Positives = 78/217 (35%), Gaps = 42/217 (19%)
Query: 101 FHLEQAR---LRSTIRIQEGRAK------PIDLLAKYIG-SEAEVDAVEMHEPYTYLTGL 150
F Q + + EG A P +L+ K++G + V+ ++ + + + L
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQ-FDQVLNL 86
Query: 151 AIKDLE-DLL--EDI-KVYMELEKGENEAYWNDISII---VEDELHGLRKLEKQGHSDLT 203
+ + E L DI + +L + + +I + + R +K+ +S L
Sbjct: 87 CLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 204 RREGIHESVAQDVASVF-----KGKTTAQLEALQTQIELKISSKTENIDNVITAEEKALQ 258
R +V + A + +G T E L+ +L + + ++I + L
Sbjct: 147 R------AVGEGNAQLVAIFGGQGNTDDYFEELR---DLYQTYHV-LVGDLIKFSAETLS 196
Query: 259 REARKGMGGD---EAEFSVESLLD------PQVYLWS 286
R + + ++ L+ + YL S
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Score = 40.8 bits (95), Expect = 8e-04
Identities = 39/218 (17%), Positives = 70/218 (32%), Gaps = 74/218 (33%)
Query: 76 EEEMALTQR------GKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYI 129
+ ++ TQ E A FE+ + +G A
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLK-------------------SKGLIPADATFA--- 1760
Query: 130 GSEAEVDAVEMH---EPYTYLTGLA-IKDLEDLLEDIK-----VYMELEKGEN--EAYW- 177
G H E Y L LA + +E L+E + + + + + E Y
Sbjct: 1761 G----------HSLGE-YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 178 ---NDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVA-------QDVASVFKGKTTAQ 227
N + L+ + ++ + +R G + Q VA+ G A
Sbjct: 1810 IAINPGRVAASFSQEALQYVVER----VGKRTGWLVEIVNYNVENQQYVAA---GDLRA- 1861
Query: 228 LEALQTQIELKISSKTENIDNVITAEEKALQREARKGM 265
L+ + T + L K + ID + +K+L E +G
Sbjct: 1862 LDTV-TNV-LN-FIKLQKIDII--ELQKSLSLEEVEGH 1894
Score = 31.2 bits (70), Expect = 0.88
Identities = 24/143 (16%), Positives = 41/143 (28%), Gaps = 45/143 (31%)
Query: 262 RKGMGGDEAEFSVESLLDPQVYLWSDKYRPRKPRYFNRVHTGFEWNKYNQTHYDMDNPPP 321
+GMG D Y + + V WN+ DN
Sbjct: 1628 EQGMGMDL-------------Y--------KTSKAAQDV-----WNR-------ADN--- 1651
Query: 322 KIVQGYKFNIFYPDLIDKNSTPQYFLNTCADNQ----DFAILRFHAGPPYEDIAFKIVNR 377
Y F+I D++ N + +++ + F + KI
Sbjct: 1652 HFKDTYGFSI--LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 378 EWEYSYKRGFRCHDETSATLDST 400
E+S FR ++ L +T
Sbjct: 1710 INEHSTSYTFR-SEK--GLLSAT 1729
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 46.0 bits (109), Expect = 2e-05
Identities = 47/265 (17%), Positives = 104/265 (39%), Gaps = 35/265 (13%)
Query: 14 EDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKK-KNLCANVKKRRQEREAER 72
E+ RL + +++ ++EAR ++++++ ++ + +KKK + +++++ +E EA R
Sbjct: 912 EEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAAR 971
Query: 73 AEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSE 132
+ + E + ++ + + +L ++ E R +
Sbjct: 972 QKLQLEKV-----TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS-----------D 1015
Query: 133 AEVDAVEMHEPYTYLTGL------AIKDLEDLLEDI-KVYMELEK------GENEAYWND 179
+ E E LT L I +LE L+ K ELEK GE+
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 180 ISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFK--GKTTAQLEALQTQIEL 237
I+ + + ++ L+ + +L E + K + + + LQ +E
Sbjct: 1076 IAEL-QAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 238 --KISSKTENIDNVITAEEKALQRE 260
+K E ++ E +AL+ E
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTE 1159
Score = 37.1 bits (86), Expect = 0.011
Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 8/147 (5%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEW 94
E K K K K + + + +K RQE E + + E E + Q +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 95 QRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGL---- 150
+ + E+ + R+++ ++ + L K E+ + ++ E
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS--DLQEDLESEKAARNKA 1142
Query: 151 --AIKDLEDLLEDIKVYMELEKGENEA 175
+DL + LE +K +E
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTAT 1169
Score = 31.3 bits (71), Expect = 0.76
Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 25/267 (9%)
Query: 9 LVYSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNL----------C 58
L+ + + + + +A + K+ ++K + ++K L
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 59 ANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGR 118
A ++ R A++ E EE + + E + Q Q ++ ++Q L +++E
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEE 968
Query: 119 AKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWN 178
A L + + ++ ++ +E I +ED + +L +
Sbjct: 969 AARQKLQLEKVTADGKIKKMED----------DILIMEDQNNKLTKERKLLEERVSDLTT 1018
Query: 179 DISIIVEDELHGLRKLE---KQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQI 235
+++ E++ L KL+ + S+L R E Q++ + K K + L QI
Sbjct: 1019 NLA-EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI-KRKLEGESSDLHEQI 1076
Query: 236 ELKISSKTENIDNVITAEEKALQREAR 262
+ E + EE+ AR
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALAR 1103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.2 bits (106), Expect = 3e-05
Identities = 59/424 (13%), Positives = 112/424 (26%), Gaps = 128/424 (30%)
Query: 81 LTQRGKEAAQ--FEEWQRQE-----DQFHLE-QARLRSTIRIQEGRAKP---IDLLAKY- 128
L + +E Q EE R E + T E R + + AKY
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 129 IGSEAEVDAVEMH------EPYTYLTG--------LAIKDLEDLLEDIKVYMELEKGENE 174
+ + + G +A+ D+ KV K + +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL----DVCLSYKV---QCKMDFK 183
Query: 175 AYWNDISI----IVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASV-------FKGK 223
+W +++ E L L+KL Q + T R ++ + S+ K K
Sbjct: 184 IFW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 224 TTAQ-------------LEA--LQTQIELKISSKTENIDNVITAEEKAL-QREARKGMGG 267
A L +I L + + D + A + +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 268 DEAE--FS------VESL------LDPQVY-LWSDKYRPRKPRYFNRVHTGFEWNKYNQT 312
DE + + L +P+ + ++ R W+ +
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT----------WDNWKHV 350
Query: 313 HYD---------MDNPPPKIVQGY--KFNIFYPDL-I-----------DKNSTPQYFLNT 349
+ D ++ P + + ++F P I S +N
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 350 CA-------DNQDFAI----LRFHAGPPYEDIAF---KIVNREWEYSYKRGFRCHDETSA 395
++ I + E+ IV+ Y+ + F D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH---YNIPKTFDSDDLIPP 467
Query: 396 TLDS 399
LD
Sbjct: 468 YLDQ 471
Score = 44.5 bits (104), Expect = 6e-05
Identities = 47/337 (13%), Positives = 84/337 (24%), Gaps = 142/337 (42%)
Query: 51 KKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKE----AAQFEEWQRQEDQFHLEQA 106
+ K+L R + L+ + A ++ W+ H+
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK------HVNCD 353
Query: 107 RLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYM 166
+L + I E+ ++ +E E L++ +
Sbjct: 354 KLTTII-------------------ESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPT 389
Query: 167 ELEKGENEAYWND-ISIIVEDELHGLRK---LEKQGHSDLTRREGIHESVAQDVASVFKG 222
L W D I V ++ L K +EKQ I
Sbjct: 390 ILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IP------------- 429
Query: 223 KTTAQLEALQTQIELKISSKTENIDNVITAEEKALQREARKGMGGDEAEFSVESLLDPQV 282
I L++ K EN E AL R S++D
Sbjct: 430 -----------SIYLELKVKLEN--------EYALHR----------------SIVD--- 451
Query: 283 YLWSDKYRPRKPRYFNRVHTGFEWNKYNQTHYDMDNPPPKIVQGYKFN-IFY----PDLI 337
Y K +D D+ P + Y ++ I + +
Sbjct: 452 -----HYNIPK-------------------TFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 338 DKNST-PQYFLNTCADNQDFAILRF------HAGPPY 367
++ + FL+ RF H +
Sbjct: 488 ERMTLFRMVFLD----------FRFLEQKIRHDSTAW 514
Score = 41.4 bits (96), Expect = 5e-04
Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 21/149 (14%)
Query: 199 HSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQIELKISSKTENIDNVITAEEKALQ 258
H + G H+ +D+ SVF+ + Q K E ID++I + A+
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHII-MSKDAVS 62
Query: 259 REAR-----KGMGGDEAEFSVESLLDPQVYLW---SDKYRPRKPRYFNRVHTGFEWNKYN 310
R + + VE +L Y + K R+P Y
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQP--------SMMTRMYI 113
Query: 311 QTHYDMDNPPPKIVQGYKFNIFYPDLIDK 339
+ + N K+N+ K
Sbjct: 114 EQRDRLYNDNQVFA---KYNVSRLQPYLK 139
Score = 37.5 bits (86), Expect = 0.007
Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 72/267 (26%)
Query: 136 DAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISIIVEDELHGLRKLE 195
D + + E ++ KD++D+ + I L K E + I I+ +D + G +L
Sbjct: 20 DILSVFED-AFVDNFDCKDVQDMPKSI-----LSKEEID----HI-IMSKDAVSGTLRL- 67
Query: 196 KQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQ------IELKISSKTENIDNV 249
+ E V + V V + + ++T+ + + + + N
Sbjct: 68 ----FWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 250 --------ITAEEKALQ-----REARK-------GMGG-------DEA--EFSVESLLDP 280
++ + L+ E R G+ G + + V+ +D
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 281 QVYLWSDKYRPRKPR----YFNRVHTGFEWNKYNQTHYDMDNPPPKI--VQGYKFNIF-- 332
+++ W + P ++ + N + N +I +Q +
Sbjct: 183 KIF-WLNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 333 --YPD--LI-----DKNSTPQYFLNTC 350
Y + L+ + F +C
Sbjct: 241 KPYENCLLVLLNVQNAK-AWNAFNLSC 266
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 40.1 bits (93), Expect = 7e-04
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)
Query: 325 QGYKFNIFYPDLIDKNS---------TPQY-FLN----TCADNQDFAILRFHAGPPYEDI 370
G + Y + +NS P ++ + + L A P+E+I
Sbjct: 116 VGMAIQVNYSSEVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI-AYEPFENI 174
Query: 371 AFKIVNRE 378
A ++ E
Sbjct: 175 AIELPPNE 182
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 40.9 bits (96), Expect = 8e-04
Identities = 31/244 (12%), Positives = 71/244 (29%), Gaps = 29/244 (11%)
Query: 19 RLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEE 78
R Y M + ++ + + + K L ++ +RE ++ + E
Sbjct: 855 RNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEAR 914
Query: 79 MALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
+ + LE ++ +I E + LL K E
Sbjct: 915 ----------SVERYKKLHIG---LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST- 960
Query: 139 EMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISIIVEDELHGLRKLEKQG 198
+ L +E +++ E E + + L + + +
Sbjct: 961 ------------ETEKLRSDVERLRM-SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007
Query: 199 HSDLTRREGIHESVAQDVASV--FKGKTTAQLEALQTQIELKISSKTENIDNVITAEEKA 256
+ + Q V+ + + E L +I + TE ++ + E K
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Query: 257 LQRE 260
L+ +
Sbjct: 1068 LELD 1071
Score = 34.7 bits (80), Expect = 0.056
Identities = 18/104 (17%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 14 EDDNQRLVYARMQVQGTGSKVEARKKK-KKKKKKKKKKKKKKKNLCANVKKRRQEREAER 72
D +RL + + + ++V + +++ K +K+ + + +KK + K + E E
Sbjct: 966 RSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLV 1025
Query: 73 AEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQE 116
+E +E+ L + KE + ++ + +L + E
Sbjct: 1026 SELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLE 1069
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.003
Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 60 NVKKRRQERE---AERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQE 116
+++K R+E+ E + M R K EEW +++ + +E+ ++ + RI +
Sbjct: 86 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKNKINN--RIAD 142
Score = 36.3 bits (83), Expect = 0.007
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 37 RKKKKKK-KKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQ 95
R++++K+ ++ K ++ KK +E ++E+ E+ + R + F + Q
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD-KAFYQ-Q 148
Query: 96 RQED 99
D
Sbjct: 149 PDAD 152
Score = 35.1 bits (80), Expect = 0.019
Identities = 8/51 (15%), Positives = 23/51 (45%), Gaps = 6/51 (11%)
Query: 35 EARKKKKKKKKKKKKK------KKKKKNLCANVKKRRQEREAERAEREEEM 79
A K +++ ++K KK +++ + + N R +A + + ++
Sbjct: 103 AASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 32.4 bits (73), Expect = 0.16
Identities = 10/71 (14%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEW 94
E +K +++++K+ ++ K ++ E+A+++ E ++ ++ + +
Sbjct: 83 EPESIRKWREEQRKRLQELDAA-----SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 95 QRQEDQFHLEQ 105
R D+ +Q
Sbjct: 138 NRIADKAFYQQ 148
Score = 30.9 bits (69), Expect = 0.58
Identities = 8/56 (14%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQE---REAERAEREEEMALTQRGKEA 88
K +++ ++K KK+L +R+ E + ++ Q +
Sbjct: 99 QELDAASKVMEQEWREKAKKDL-EEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.6 bits (81), Expect = 0.034
Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 8/118 (6%)
Query: 10 VYSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVK------- 62
V S E +QR A + ++ ++ K + ++ +++ + K
Sbjct: 640 VQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEA 699
Query: 63 -KRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRA 119
K R+E A + EA E R E + + QA+L++ E A
Sbjct: 700 EKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEA 757
Score = 34.8 bits (79), Expect = 0.051
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 23 ARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQER-EAERAEREEEMAL 81
AR +++ ++ +K +K+ + + N K + R EA R E E +
Sbjct: 684 ARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQ 743
Query: 82 TQRGKEAAQFE---EWQRQEDQFHLEQARLRSTIRIQEGRAK 120
+ +A E E +R + +E R+ + ++ +A+
Sbjct: 744 AKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQ 785
Score = 31.3 bits (70), Expect = 0.64
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 13 EEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAER 72
+ L M V+ TG+ + + + + + + + L A E E ER
Sbjct: 702 ARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELER 761
Query: 73 AEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRA 119
++ EM L + E + + ++E + +
Sbjct: 762 VKKVREMELIYARAQLE--LEVSKAQQLANVEAKKFKEMTEALGPGT 806
Score = 28.2 bits (62), Expect = 5.8
Identities = 39/204 (19%), Positives = 73/204 (35%), Gaps = 24/204 (11%)
Query: 63 KRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPI 122
+R +R+ + T +EAA E QR E + R + + + +A+
Sbjct: 647 DQRTRDALQRSVQLAIEITTNS-QEAAAKHEAQRLEQEARGRLERQKILDQSEAEKAR-- 703
Query: 123 DLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISI 182
+ + EA AVE TG A + E E ++ E + + ++I
Sbjct: 704 ---KELLELEAMSMAVES-------TGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAI 753
Query: 183 IVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGKTTAQLEALQTQIELKISSK 242
E EL ++K+ + + + S AQ +A+V K EAL ++
Sbjct: 754 ETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVA 813
Query: 243 TENIDNVITAEEKALQREARKGMG 266
+Q + + +G
Sbjct: 814 -----------GPEMQVKLLQSLG 826
Score = 28.2 bits (62), Expect = 6.6
Identities = 23/161 (14%), Positives = 55/161 (34%), Gaps = 1/161 (0%)
Query: 15 DDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAE 74
N +V + R ++ + + + A + +R E+EA R
Sbjct: 629 PQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEA-RGR 687
Query: 75 REEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAE 134
E + L Q E A+ E + + +E A I+ + ++ +
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Query: 135 VDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEA 175
A+ + ++++E + ++ +E+ K + A
Sbjct: 748 AQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLA 788
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 35.0 bits (81), Expect = 0.048
Identities = 30/259 (11%), Positives = 75/259 (28%), Gaps = 16/259 (6%)
Query: 6 PGTLVYSEEDDNQRLVYARM--QVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKK 63
G L EE+ + + + ++ + + + + + A+ +
Sbjct: 744 AGVLAQLEEERASEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEY 803
Query: 64 RRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPID 123
++ E+ + E E A+ + + + + L + ST E +
Sbjct: 804 KKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHA 863
Query: 124 LLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELEKGENEAYWNDISII 183
+ + AV + + L +++ E
Sbjct: 864 EALRIELKRQKKIAVLLQKYNRIL--KKLENWATTKSVYLGSNETGDSITAV-------- 913
Query: 184 VEDELHGLRKLEKQGHSDLTRREGIHESVAQDVASVFKGK---TTAQLEALQTQIELKIS 240
+ +L L + + S + S+ + + T + + Q +
Sbjct: 914 -QAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK 972
Query: 241 SKTENIDNVITAEEKALQR 259
S E N + AE + LQ+
Sbjct: 973 SSAETYKNTLLAELERLQK 991
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 33.6 bits (76), Expect = 0.11
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 9/90 (10%)
Query: 1 MSRLEPGTLVYSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCAN 60
+ +L P + E + K +K K KK + + A
Sbjct: 330 LFKLNPAAKIVKE---------QAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAF 380
Query: 61 VKKRRQEREAERAEREEEMALTQRGKEAAQ 90
K + R E + +A Q KE +
Sbjct: 381 NKANEEAIAKARQEDADFIAQGQEIKEGDE 410
Score = 32.1 bits (72), Expect = 0.35
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 23 ARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALT 82
+ Q + +A+++ K +K K KK + + EA R+E+
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Query: 83 QRGKEAAQFEE 93
+G+E + +E
Sbjct: 400 AQGQEIKEGDE 410
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 32.9 bits (74), Expect = 0.14
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKK-RRQEREAERAEREE 77
A ++ +K K+K+ + A K+ ER +A+R+
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 31.8 bits (71), Expect = 0.28
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 26 QVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRG 85
+V G E ++++ + + +K+K ++ N ++R Q R + +++
Sbjct: 117 EVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQD-----VPAT 171
Query: 86 KEAAQFEEWQRQED 99
K+ A + W ED
Sbjct: 172 KQEADDDNWDLPED 185
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 32.5 bits (74), Expect = 0.30
Identities = 10/60 (16%), Positives = 21/60 (35%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQ 97
K+ ++K + KK+ + R E + A+ A ++ A+F
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTRLLGL 691
Score = 28.3 bits (63), Expect = 6.4
Identities = 7/57 (12%), Positives = 12/57 (21%)
Query: 42 KKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQE 98
K K+ ++K + E +A Q E
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 27.9 bits (62), Expect = 7.0
Identities = 8/62 (12%), Positives = 16/62 (25%)
Query: 41 KKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQ 100
K K+ ++K + + + R E A K E + +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Query: 101 FH 102
Sbjct: 688 LL 689
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.8 bits (71), Expect = 0.38
Identities = 16/84 (19%), Positives = 34/84 (40%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQ 97
KKK K KKK + +KK+R+ + +R + + ++A + +++
Sbjct: 17 TLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKA 76
Query: 98 EDQFHLEQARLRSTIRIQEGRAKP 121
+ + R+ IR+ K
Sbjct: 77 KHYHKEYRQMYRTEIRMARMARKA 100
Score = 31.4 bits (70), Expect = 0.52
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCAN---VKKRRQEREAERAEREEEMA 80
R +KK K +K ++K A + R+ R R R A
Sbjct: 52 VKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKA 100
Score = 27.5 bits (60), Expect = 8.1
Identities = 9/56 (16%), Positives = 18/56 (32%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEE 93
+ K K+ +KK K +K + ++ + E + R A
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFY 104
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 31.9 bits (73), Expect = 0.46
Identities = 18/143 (12%), Positives = 45/143 (31%), Gaps = 2/143 (1%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCAN-VKKRRQEREAERAEREEEMALTQRGKEAAQF 91
K E + + + K++KK N + K+ + ++ A Q
Sbjct: 865 KAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDS-ITAVQA 923
Query: 92 EEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLA 151
+ + + +S + A+ +L + E + +T + A
Sbjct: 924 KLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSA 983
Query: 152 IKDLEDLLEDIKVYMELEKGENE 174
LL +++ ++E +
Sbjct: 984 ETYKNTLLAELERLQKIEDLHHH 1006
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.6 bits (71), Expect = 0.49
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEW 94
AR + +KK K+ ++ + + AN+ K+ E++A+ + T G + +
Sbjct: 386 AARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDS 445
Query: 95 QRQEDQ 100
Q E++
Sbjct: 446 QAMEEE 451
Score = 29.3 bits (65), Expect = 2.5
Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREE--EMALTQRGKEAAQ 90
+++ +KK K+ ++ ++ N+ ++ + EA +A ++ E ++G ++
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQA 447
Query: 91 FEE 93
EE
Sbjct: 448 MEE 450
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 29.7 bits (66), Expect = 0.81
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 40 KKKKKKKKKKKKKKKKNLCANVKKRRQER 68
K K KK K +KN+ KK++++R
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 28.1 bits (62), Expect = 2.3
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKN 56
S A+K K +K K KKKK+
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRK 30
Score = 27.4 bits (60), Expect = 4.4
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREA 70
K + KK K +K K KK K++R+E A
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKK-----KRKRKESYA 36
Score = 27.0 bits (59), Expect = 5.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 29 GTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKK 63
G +K + +K K KKKK+K+K++ +
Sbjct: 7 GKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYT 41
Score = 26.6 bits (58), Expect = 9.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 30 TGSKVEARKKKKKKKKKKKKKKKKKK 55
T K + K +K K KKKK+K
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRK 30
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 30.7 bits (69), Expect = 1.0
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 29 GTGSKVEARKKKKKKKKKKKKKKKKKK 55
+ KKKKKKKKK+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.9 bits (67), Expect = 1.6
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 28 QGTGSKVEARKKKKKKKKKKKKKKKKK 54
G KKKKKKKKK+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 29.5 bits (66), Expect = 2.0
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 29 GTGSKVEARKKKKKKKKKKKKKKKKKKN 56
+ KKKKKKKKK+
Sbjct: 81 RDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 29.1 bits (65), Expect = 2.8
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFE 92
+ E ++ KKK++KKKK + ++ ++E+ + E L + E + +
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 93 E 93
E
Sbjct: 83 E 83
Score = 28.7 bits (64), Expect = 3.5
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFE 92
+ A ++ KKK++KKKK K A ++ +E A E ++ + + +
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDED 84
Query: 93 E 93
+
Sbjct: 85 D 85
Score = 28.3 bits (63), Expect = 5.5
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 27 VQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86
+G S E KKK++KKKK K K E A + E AL + +
Sbjct: 24 EEGAASTAEEAAKKKRRKKKKSKGPSAAGE--QEPDKESGASVDEVARQLERSALEDKER 81
Query: 87 EAAQFEE 93
+ +
Sbjct: 82 DEDDEDG 88
Score = 28.0 bits (62), Expect = 6.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 29 GTGSKVEARKKKKKKKKKKKKKKKKKKN 56
+ KKKKKKKKK+ K + +
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 28.0 bits (62), Expect = 6.1
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 12 SEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKN 56
S ++ ++L + ++ + E KKKKKKKKK
Sbjct: 63 SVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 28.0 bits (62), Expect = 7.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 26 QVQGTGSKVEARKKKKKKKKKKKKKKK 52
G G A KKKKKKKKK+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 29.8 bits (66), Expect = 1.2
Identities = 14/87 (16%), Positives = 31/87 (35%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEW 94
E K+++++ +KK+K + RAE+ Q + E
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Query: 95 QRQEDQFHLEQARLRSTIRIQEGRAKP 121
+ + + +A+ +RI+ A
Sbjct: 72 RMKGGFYVSPEAKPLFVVRIRGINAMH 98
Score = 29.0 bits (64), Expect = 2.4
Identities = 8/54 (14%), Positives = 18/54 (33%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86
A KK+K +K K + K + + ++ + + +G
Sbjct: 23 VWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGG 76
Score = 27.9 bits (61), Expect = 5.3
Identities = 10/84 (11%), Positives = 29/84 (34%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFE 92
K + +K K + K + + + + +E + E + + F
Sbjct: 29 KQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAKPLFV 88
Query: 93 EWQRQEDQFHLEQARLRSTIRIQE 116
R + H + ++ +R+++
Sbjct: 89 VRIRGINAMHPKTKKILQLLRLRQ 112
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 30.2 bits (68), Expect = 1.3
Identities = 10/44 (22%), Positives = 28/44 (63%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEE 78
EA+++ + +KKK++++++ + ++R +ER+ +A+ E
Sbjct: 390 EAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSE 433
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 30.0 bits (67), Expect = 1.5
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMA 80
+KK KK+ KKK+ + K +L A K R +++A +E A
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSL-AQKKDRVAQKKASFLRAQERAA 295
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 28.6 bits (63), Expect = 1.7
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREA 70
A+ KK KK K +K KK R+E +
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYS 39
Score = 27.1 bits (59), Expect = 5.8
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQERE 69
K KK KK K KKR++ R+
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.7 bits (58), Expect = 8.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 28 QGTGSKVEARKKKKKKKKKKKKKKKKKK 55
+ + + KK K +KK KK+KK
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKS 33
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 110 STIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
ST+ +EG ID LAK G E V +
Sbjct: 23 STVIREEG----IDELAKICGVEDAVSEM 47
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 29.8 bits (66), Expect = 1.9
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQ 97
K K + K+ A +++ R+E A+ + E EM K + ++ +
Sbjct: 297 AVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDS 356
Query: 98 EDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHE 142
E + +++ + E + K ++ + E E E +
Sbjct: 357 EAELQRRHEQMK---KNLEAQHKELEEKRRQF--EDEKANWEAQQ 396
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 2.0
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQR 84
E + K K+KKK +K +K + + + + + + +++A T R
Sbjct: 106 EEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR 155
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 29.4 bits (65), Expect = 2.0
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 30 TGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKK 63
+ VEA++ K K K KK + A K
Sbjct: 273 SDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
Score = 28.3 bits (62), Expect = 5.1
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 6 PGTLVYSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNL 57
P +++L + V+ + K K KK K +K L
Sbjct: 256 PEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKAL 307
Score = 27.9 bits (61), Expect = 5.8
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 35 EARKKKKKKKKKKKKKKKKKKN 56
+ + KK K +K K +
Sbjct: 290 DLKTGKKNSKMTAAQKALAKVD 311
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 29.4 bits (65), Expect = 2.0
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREE 77
+ E +K K +++K + K++ K ++ E E AE++
Sbjct: 15 RDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKI 59
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 29.5 bits (65), Expect = 2.3
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEE 78
K +K KK KK KK K A K ++ AE+ EE
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEE 416
Score = 29.1 bits (64), Expect = 2.7
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 23 ARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALT 82
A ++ + V +K ++KK KK KK KK + K ++ A + E+ T
Sbjct: 356 AALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG-KKAAATKKPAADKKPAEKKPTT 414
Query: 83 QRGKEAA 89
+ K AA
Sbjct: 415 EEKKPAA 421
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 28.0 bits (62), Expect = 2.4
Identities = 3/30 (10%), Positives = 9/30 (30%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVK 62
++ + K K+ K + +
Sbjct: 2 RLTKEAAAVAEGKSKQDASPKPYAVKYGLN 31
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 29.0 bits (64), Expect = 2.6
Identities = 8/38 (21%), Positives = 19/38 (50%)
Query: 28 QGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRR 65
+ + + ++KKKK+ K K K++ + ++ R
Sbjct: 77 KQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 28.2 bits (62), Expect = 4.9
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMAL 81
R ++KK+ K+ K KK +K++++ + + + MAL
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKP--KPQEKKKKQPAKTKPGKRQRMAL 108
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin,
halogenase, biosynthetic protein; HET: DSU AKG; 1.60A
{Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A*
2fcv_A*
Length = 313
Score = 29.3 bits (65), Expect = 2.6
Identities = 15/115 (13%), Positives = 35/115 (30%), Gaps = 14/115 (12%)
Query: 224 TTAQLEALQTQIELKISSKTENIDNVITAEEKALQREARKGMGGDEAEFS---------- 273
+ +++ + L++ ++ + A D+ S
Sbjct: 31 SPEEMKETWKRTRLRLLDRSAAAYQDLDAISGGTNIANYDRHLDDDFLASHICRPEICDR 90
Query: 274 VESLLDPQVYLWSDKYRPRKPRYFN----RVHTGFEWNKYNQTHYDMDNPPPKIV 324
VES+L P V W ++ P+ P + T + Q + + +
Sbjct: 91 VESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQIIWPENEEFGGTI 145
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 27.7 bits (61), Expect = 2.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 26 QVQGTGSKVEARKKKKKKKKKKKKKKKKKK 55
+ + + K K+KKKK K K+K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 26.5 bits (58), Expect = 6.9
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLC 58
K+KKKK K K+K+K N
Sbjct: 14 KPAKSGGGKQKKKKWSKGKQKEKVNNSV 41
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.2
Length = 133
Score = 27.9 bits (62), Expect = 3.0
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86
KKK K +K + K L + K+ EREAE E+ AL+ R +
Sbjct: 3 PHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRAQ 51
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 29.1 bits (65), Expect = 3.0
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEW 94
A+ + +++ +++ ++K L AN+ +R E E +A+ E E + ++
Sbjct: 265 AAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEE-NKAKAEASSGDHPTDTEMKEEQKS 323
Query: 95 QRQEDQFHLEQ 105
Q +E
Sbjct: 324 NTAGSQSQVET 334
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 28.1 bits (62), Expect = 3.2
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKE 87
EA ++ K++ KK K +KK K ++ Q + + + G +
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGK 161
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology,
protein structure initiati northeast structural
genomics consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.8 bits (64), Expect = 3.6
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 28 QGTGSKVEARKKKKKKKKKKKKKKKKKK 55
+ + +R K K+ +K
Sbjct: 9 EPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.6 bits (61), Expect = 8.5
Identities = 4/32 (12%), Positives = 12/32 (37%)
Query: 26 QVQGTGSKVEARKKKKKKKKKKKKKKKKKKNL 57
+ Q ++ + + K K+ +K +
Sbjct: 6 RYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C
3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C
3azj_C 3azk_C 3azl_C 3azm_C ...
Length = 129
Score = 27.9 bits (61), Expect = 3.7
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 37 RKKKKKKKKKKKKKKKKKKNLCANVKK-RRQEREAERAEREEEMA 80
R K+ K + K K + + L V + R R+ AER A
Sbjct: 4 RGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGA 48
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc
binding, structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 74
Score = 26.4 bits (58), Expect = 3.7
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKR 64
GS + + K C + K+
Sbjct: 1 GSSGSSGTRGGDSAAAPLDPPKSTATRCLSCNKK 34
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 28.1 bits (62), Expect = 3.7
Identities = 12/76 (15%), Positives = 26/76 (34%)
Query: 9 LVYSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQER 68
+ + D + +V+ + R K+ KK K+ KK A K +++
Sbjct: 82 ITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQK 141
Query: 69 EAERAEREEEMALTQR 84
+ + +R
Sbjct: 142 IVKPVKVSAPRVGGKR 157
Score = 26.9 bits (59), Expect = 9.2
Identities = 15/62 (24%), Positives = 32/62 (51%)
Query: 32 SKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQF 91
+ E +KK+ ++ K ++ +L + KR Q+ E +A+RE+ + + K+A Q
Sbjct: 62 GQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKKAKQA 121
Query: 92 EE 93
+
Sbjct: 122 SK 123
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 28.7 bits (63), Expect = 3.8
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 44 KKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQ 100
++ K+ +K +N N + E+EAE +E +A + AQ + + D
Sbjct: 301 SERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIA-----RMQAQMQMQMQGGDG 352
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea} SCOP:
i.1.1.1
Length = 140
Score = 27.7 bits (62), Expect = 3.8
Identities = 2/26 (7%), Positives = 10/26 (38%)
Query: 32 SKVEARKKKKKKKKKKKKKKKKKKNL 57
+K + ++ + +K + +
Sbjct: 2 AKPIPKIGSRRNGRISSRKSASARKI 27
Score = 26.5 bits (59), Expect = 8.7
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 32 SKVEARKKKKKKKKKKKKKKKKKKNLCANVK 62
++ + +K +K +V+
Sbjct: 5 IPKIGSRRNGRISSRKSASARKIPKGVIHVQ 35
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 28.1 bits (63), Expect = 3.9
Identities = 2/24 (8%), Positives = 11/24 (45%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLC 58
+ ++K+ +++K ++
Sbjct: 177 VVLQPPRRKEVPRRRKNHRRSGCS 200
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 26.9 bits (60), Expect = 3.9
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 37 RKKKKKKKKKKKKKKKKKKNLCAN 60
+ K KK+ +++ +K K
Sbjct: 4 KNAKPKKEAQRRPSRKAKVKATLG 27
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 28.3 bits (63), Expect = 4.0
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 23 ARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERA 73
A+ +++ G + +KK K K + KKR E +E A
Sbjct: 206 AKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARAEE-YFAKKRGGETASEPA 255
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 28.6 bits (64), Expect = 4.0
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 110 STIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
ST +EG +D +A+ +G ++ A+
Sbjct: 117 STFIAEEG----VDEIARELGMSTQITAI 141
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 28.1 bits (62), Expect = 4.1
Identities = 12/70 (17%), Positives = 30/70 (42%)
Query: 11 YSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREA 70
Y + + +Y + + G+ + ++ + + K +++K L + RR + A
Sbjct: 109 YRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAEARRLKNRA 168
Query: 71 ERAEREEEMA 80
R R + +A
Sbjct: 169 ARDRRAQRVA 178
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 28.7 bits (64), Expect = 4.1
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 30 TGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRR 65
+ + K+K+ + K KKK K K+ +
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 27.3 bits (60), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKN 56
RK+ KK K+K+ KKKK+ N
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
Score = 26.5 bits (58), Expect = 6.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCAN 60
G + ++K+K+ KK K+K+ KK N
Sbjct: 74 GEVLYVDERKRKESPKKNKEKRMKKKKRLN 103
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.8 bits (61), Expect = 4.5
Identities = 9/50 (18%), Positives = 24/50 (48%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQR 84
+A ++ K+KK +KK+ + L K ++ E ++ ++ ++
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 27.4 bits (60), Expect = 5.7
Identities = 7/52 (13%), Positives = 22/52 (42%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGK 86
+K ++ K+KK +KK ++ + + + ++ + + +G
Sbjct: 105 AEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGG 156
Score = 27.1 bits (59), Expect = 7.0
Identities = 12/69 (17%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 30 TGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAA 89
G +E ++K KK + +K V++ +Q++ + ++ + L + +AA
Sbjct: 85 VGISLEEINRRKNLDASHKKAEAEKA-----VRELKQKKANDIEKKRADRKLQGKDVKAA 139
Query: 90 QFEEWQRQE 98
+ E ++ +
Sbjct: 140 KKAETKKTK 148
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q
3u5g_Z
Length = 108
Score = 27.3 bits (60), Expect = 4.6
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKK 55
K + K K KK KKK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKK 26
Score = 26.5 bits (58), Expect = 7.8
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 26 QVQGTGSKVEARKKKKKKKKKKKKKKKKKK 55
+ Q + + A KK KKK KK K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMK 33
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 28.7 bits (64), Expect = 4.9
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 34 VEARKKKKKKKKKKKKKKKKKKNLC 58
+ R K KKK K +++K L
Sbjct: 536 RDFRVKIYKKKAKNPNNSEEQKLLY 560
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 28.2 bits (62), Expect = 5.0
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 12 SEEDDNQRLVYARMQVQGTGSKVEARK-----------KKKKKKKKKKKKKKKKKNLCAN 60
S+EDD + V R +G + +A K +K+ ++ K + + ++ A
Sbjct: 148 SKEDDVRDFVIRREVTKGEKTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAE 207
Query: 61 VKKRRQEREAERAEREEEMALTQRGKEAA 89
+ +R +ER + E+ + A
Sbjct: 208 YAQLLAKRLSERKAEKAEIRKRRASSLKA 236
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 28.2 bits (63), Expect = 5.1
Identities = 14/47 (29%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 97 QEDQFHLEQARLR-----STIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
+D L + L ST E ID +AK G EV V
Sbjct: 98 IQDVPDLTKPGLIVLDMDSTAIQIEC----IDEIAKLAGVGEEVAEV 140
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 28.1 bits (62), Expect = 5.3
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 21 VYARMQVQGTGSKVEARKKKKKKKKKKKK--KKKKKKNLCANVKKRRQEREAERAEREEE 78
V+A ++ T +K ++ K+ KK +++K +L + A+ + EE+
Sbjct: 243 VHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEED 302
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 26.9 bits (59), Expect = 5.4
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 34 VEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEE 78
A K KK K+ +++ K A + E EE
Sbjct: 54 EAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEE 98
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.4 bits (62), Expect = 5.7
Identities = 16/95 (16%), Positives = 39/95 (41%), Gaps = 11/95 (11%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVK-----------KRRQEREAERAEREEEMAL 81
+V+A + K + ++K ++ + + K +R E+E +AL
Sbjct: 493 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Query: 82 TQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQE 116
+ +E E +Q++ E L++ +R ++
Sbjct: 553 KLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
PDB: 3izr_X 2go5_4 2j37_4
Length = 152
Score = 27.1 bits (60), Expect = 6.0
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQER 68
A KK K ++ K K + +K ++ R
Sbjct: 5 AAVKKADGKTQQALKVAKAVKSGSIKRKSKKIR 37
Score = 27.1 bits (60), Expect = 6.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKR 64
K +K K ++ K K K K+
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
3.30A {Homo sapiens} SCOP: h.1.25.2
Length = 180
Score = 27.6 bits (61), Expect = 6.1
Identities = 17/47 (36%), Positives = 23/47 (48%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQR 84
KKK K +K + K L + K+ EREAE E+ AL+ R
Sbjct: 3 PHAKKKSKISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTR 49
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 27.9 bits (62), Expect = 6.3
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 14/146 (9%)
Query: 32 SKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQ-RGKEAAQ 90
+ +E ++ K K+K+ + + + Q+ + L A
Sbjct: 44 ADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQF---------GINLHMYSSLSVAD 94
Query: 91 FEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGL 150
+ D+ L+ + + E ++L Y + + V E
Sbjct: 95 LVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEK- 153
Query: 151 AIKDLEDLLEDIKVYMELEKGENEAY 176
D DL ++Y++L +
Sbjct: 154 ---DPNDLQRADQIYLQLMVNLESYW 176
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant,
chromatin, X- RAY structure, crystallography,
structural protein/DNA complex; 2.90A {Mus musculus}
SCOP: a.22.1.1
Length = 149
Score = 27.1 bits (59), Expect = 6.4
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKK-RRQEREAERAER 75
R K+ K + K K + + L V + R R+ +ER
Sbjct: 22 GRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSER 62
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 27.6 bits (60), Expect = 6.8
Identities = 14/83 (16%), Positives = 34/83 (40%)
Query: 39 KKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQE 98
KK K+ + K + ++L + + ++ + R Q +W++
Sbjct: 129 KKHGKEDTVRLLKSQTRSLLQKIDMDSKMKKMAELQLSVVSDPKNRKAIENQIRQWEQNL 188
Query: 99 DQFHLEQARLRSTIRIQEGRAKP 121
++FH++ R+R + +G P
Sbjct: 189 EKFHMDLFRMRCYLASLQGGELP 211
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 27.8 bits (63), Expect = 7.0
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 50 KKKKKKNLCANVKK-RRQEREAERAERE 76
KKK ++ N K + +REAE+A+R
Sbjct: 259 KKKHGIDVSDNNKALAKLKREAEKAKRA 286
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A
{Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P
3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 27.0 bits (59), Expect = 7.2
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 37 RKKKKKKKKKKKKKKKKKKNLCANVKKR 64
R + KK+ K + +
Sbjct: 23 RWAENNYKKRLLGTAFKSSPFGGSSHAK 50
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 27.5 bits (62), Expect = 7.2
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 110 STIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
ST+ E ID +A+ G E EV +
Sbjct: 14 STLVNNET----IDEIAREAGVEEEVKKI 38
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 27.2 bits (61), Expect = 7.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 110 STIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
ST+ E I+ LA+ G EV +
Sbjct: 13 STLVNAET----IESLARAWGVFDEVKTI 37
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 27.6 bits (61), Expect = 7.8
Identities = 31/184 (16%), Positives = 58/184 (31%), Gaps = 2/184 (1%)
Query: 38 KKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQ 97
KK K KKK K ++ + K + + AE + E + + E+
Sbjct: 2 KKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEP-DPELLASEPELEDLADP 60
Query: 98 EDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLED 157
D +A L + E + + L E+ + LT DL
Sbjct: 61 LDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHEIGQVP-LLTLEEEIDLAR 119
Query: 158 LLEDIKVYMELEKGENEAYWNDISIIVEDELHGLRKLEKQGHSDLTRREGIHESVAQDVA 217
+E+ ++ I +V ++ G +++K E V +
Sbjct: 120 KVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLK 179
Query: 218 SVFK 221
S+ K
Sbjct: 180 SLPK 183
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 50 KKKKKKNLCANVKK-RRQEREAERAERE 76
K+K KK++ N + RR ERA+R
Sbjct: 246 KRKHKKDISENKRAVRRLRTACERAKRT 273
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 27.8 bits (62), Expect = 7.9
Identities = 9/42 (21%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 35 EARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAERE 76
+A K+ +K+++ ++K ++ K +++ E ER E++
Sbjct: 307 QAVKENQKRRETEEKMRRA--------KLAKEKAEKERLEKQ 340
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 27.3 bits (60), Expect = 8.4
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 17 NQRLVYA-RMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAER 75
NQ V A +V + V+ K ++KK + KK + L + K+ + + +
Sbjct: 121 NQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDD 180
Query: 76 EEE 78
++
Sbjct: 181 QKV 183
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 26.9 bits (59), Expect = 8.6
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 17 NQRLVYA-RMQVQGTGSKVEARKKK--KKKKKKKKKKKKKKKNLCANVKKRRQEREAERA 73
NQ + +V TG + ++K +K K K L KK+ ER+ R
Sbjct: 91 NQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAELTEEQKKKETERKNARK 150
Query: 74 E 74
+
Sbjct: 151 Q 151
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.4 bits (61), Expect = 8.9
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAE 71
+K +KKKKKK K + + + +
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEENEAGD 401
>3iz5_B 60S ribosomal protein L2 (L2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_B 2zkr_a
Length = 261
Score = 27.2 bits (61), Expect = 9.2
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 36 ARKKKKKKKKKKKKKKKKKK 55
AR+ + + + K K
Sbjct: 240 ARRTGRLRGQAAATAAKADK 259
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 25.9 bits (56), Expect = 9.4
Identities = 5/18 (27%), Positives = 12/18 (66%)
Query: 37 RKKKKKKKKKKKKKKKKK 54
K+ ++ K K++K++K
Sbjct: 73 CKEIANQRSKSKRQKRRK 90
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 27.5 bits (62), Expect = 9.4
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 50 KKKKKKNLCANVKK-RRQEREAERAERE 76
K+K KK++ N + RR ERA+R
Sbjct: 267 KRKHKKDIGPNKRAVRRLRTACERAKRT 294
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.378
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,369,907
Number of extensions: 399043
Number of successful extensions: 3588
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2736
Number of HSP's successfully gapped: 368
Length of query: 409
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 313
Effective length of database: 4,021,377
Effective search space: 1258691001
Effective search space used: 1258691001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)