RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy9531
(409 letters)
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus
scrofa), cytosolic form [TaxId: 9823]}
Length = 412
Score = 32.2 bits (72), Expect = 0.12
Identities = 16/108 (14%), Positives = 35/108 (32%), Gaps = 5/108 (4%)
Query: 59 ANVKKRRQEREAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGR 118
+ ++ Q ++ R A R + E +++ RI R
Sbjct: 279 SILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMA----DRILSMR 334
Query: 119 AKPIDLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYM 166
++ L + + + + TGL K +E L+ +Y+
Sbjct: 335 SELRARLEA-LKTPGTWNHITDQIGMFSFTGLNPKQVEYLINQKHIYL 381
>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT
{Escherichia coli [TaxId: 562]}
Length = 396
Score = 31.9 bits (71), Expect = 0.13
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 83 QRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHE 142
+ R + L R RIQ R ++ L + G+ + +
Sbjct: 291 ASVVATILSNDALRAIWEQELTDMR----QRIQRMRQLFVNTLQE-KGANRDFSFIIKQN 345
Query: 143 PYTYLTGLAIKDLEDLLEDIKVYM 166
+GL + + L E+ VY
Sbjct: 346 GMFSFSGLTKEQVLRLREEFGVYA 369
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 149
Score = 28.2 bits (63), Expect = 0.93
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 13 EEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKN 56
E D + + +Y ++ +G+ E +K +++ ++KK K+
Sbjct: 44 ERDLSNKKIYQEEEMPESGAGSEFNRKLREEARRKKYGIVLKEF 87
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 27.1 bits (60), Expect = 0.94
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKR 64
GS + K + KKK C K+
Sbjct: 1 GSSGSSGIHHLPPVKAPLQTKKKIMKHCFLCGKK 34
>d2odka1 d.306.1.1 (A:1-51) Hypothetical protein NE2111
{Nitrosomonas europaea [TaxId: 915]}
Length = 51
Score = 26.1 bits (58), Expect = 1.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 71 ERAEREEEMALTQRGKEAA---QFEEWQR 96
+ E +++RG E A EW+R
Sbjct: 18 DACITEGPQIVSRRGAEEAVLVPIGEWRR 46
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 28.9 bits (64), Expect = 1.1
Identities = 15/80 (18%), Positives = 39/80 (48%)
Query: 33 KVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQFE 92
K+ ++K ++ ++K++ +++L +K +R E+E +AL + +E E
Sbjct: 221 KMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280
Query: 93 EWQRQEDQFHLEQARLRSTI 112
+Q++ E L++ +
Sbjct: 281 GFQKESRIMKNEIQDLQTKM 300
>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Paracoccus denitrificans [TaxId: 266]}
Length = 394
Score = 28.8 bits (63), Expect = 1.1
Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 79 MALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAV 138
+ R + LE R + R + L + V
Sbjct: 284 PFHGAKIVSTVLTTPELRADWMAELEAVR----SGMLRLREQLAGELRD-LSGSDRFGFV 338
Query: 139 EMHEPYTYLTGLAIKDLEDLLEDIKVYM 166
H G + ++ + E+ +YM
Sbjct: 339 AEHRGMFSRLGATPEQVKRIKEEFGIYM 366
>d2fefa2 a.254.1.1 (A:135-293) Hypothetical protein PA2201
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 159
Score = 27.5 bits (61), Expect = 2.0
Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 1/58 (1%)
Query: 123 DLLAKYIGSEAEVDAVEMHEPYTYLTGLAIKDLEDLLEDIKVYMELE-KGENEAYWND 179
L A +G + + P+ L + + + Y++ + + +
Sbjct: 49 YLGAAALGLTSASEETFHPRPFGQLRAFFEEADGSDAQALAPYLQSQYREFFQLSPKA 106
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.8 bits (59), Expect = 2.8
Identities = 10/69 (14%), Positives = 23/69 (33%)
Query: 32 SKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMALTQRGKEAAQF 91
S + +++ ++ + ++RR+ +EAE + E +R
Sbjct: 25 SFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAI 84
Query: 92 EEWQRQEDQ 100
EE
Sbjct: 85 EENNNFIKM 93
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 25.6 bits (56), Expect = 3.1
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKR 64
GS + + K C + K+
Sbjct: 1 GSSGSSGTRGGDSAAAPLDPPKSTATRCLSCNKK 34
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 26.3 bits (58), Expect = 3.2
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 27 VQGTGSKVEARKKKKKKKKKKKKKKKKKK 55
V+G ++ AR +K +K KKK +K
Sbjct: 97 VRGQRTRTNARTRKGPRKTVAGKKKAPRK 125
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.3 bits (60), Expect = 3.4
Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 17/133 (12%)
Query: 11 YSEEDDNQRLVYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQE--- 67
+ +E QR R+++ + +K + + ++ A ++
Sbjct: 129 FGDEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQLTPDERAQQAALHAQQDAVTKI 188
Query: 68 -------------REAERAEREEEMALTQRGKEAAQFEEWQRQEDQFHLEQARLRSTIRI 114
R E A + + E WQ + + E+ R+ +
Sbjct: 189 ADLQKAGATPDQMRAQIAQTLGPEAA-ARAAQMQQDDEAWQTRYQAYAAERDRIAAQGLA 247
Query: 115 QEGRAKPIDLLAK 127
+ R I L +
Sbjct: 248 PQDRDARIAQLRQ 260
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.9 bits (57), Expect = 3.4
Identities = 4/18 (22%), Positives = 5/18 (27%)
Query: 38 KKKKKKKKKKKKKKKKKK 55
+K KKK
Sbjct: 2 SSGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 3.7
Identities = 4/17 (23%), Positives = 5/17 (29%)
Query: 37 RKKKKKKKKKKKKKKKK 53
+K KKK
Sbjct: 3 SGSSGRKPPPKKKMTGT 19
Score = 25.5 bits (56), Expect = 4.3
Identities = 5/19 (26%), Positives = 6/19 (31%)
Query: 39 KKKKKKKKKKKKKKKKKNL 57
+K KKK L
Sbjct: 2 SSGSSGRKPPPKKKMTGTL 20
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 26.0 bits (57), Expect = 3.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 34 VEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREE 77
V R+ KK+ +KKK K+ L A + + R+ R+E +
Sbjct: 2 VTPREPKKRTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPD 45
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 26.4 bits (58), Expect = 4.7
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 42 KKKKKKKKKKKKKKNLCANVKKRRQERE 69
K K K K +++ KN + K+ +E
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKE 29
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 26.2 bits (58), Expect = 4.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 36 ARKKKKKKKKKKKKKKKKKKNL 57
ARK K+ +K+K+++ KKK L
Sbjct: 142 ARKLKQYLSEKRKEQEAKKKLL 163
>d1gyta1 c.50.1.1 (A:1-178) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Escherichia coli, PepA [TaxId:
562]}
Length = 178
Score = 26.4 bits (57), Expect = 4.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 42 KKKKKKKKKKKKKKNLCANVKKRRQEREAERA 73
+ K K + ++ + + NV RR+ ERA
Sbjct: 142 QLKTNKSEPRRPLRKMVFNVPTRRELTSGERA 173
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 24.9 bits (54), Expect = 5.1
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKR 64
GS + + ++K + K KKN C +K+
Sbjct: 1 GSSGSSGPSSSQSEEKAPELPKPKKNRCFMCRKK 34
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 25.6 bits (56), Expect = 6.1
Identities = 14/77 (18%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 21 VYARMQVQGTGSKVEARKKKKKKKKKKKKKKKKKKNLCANVKKRRQEREAERAEREEEMA 80
V ++ G GS + K+ ++ K K++K + N+ +E + ++E+
Sbjct: 63 VIQALESLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQ----QQELF 118
Query: 81 LTQRGKEAAQFEEWQRQ 97
R ++A ++ Q
Sbjct: 119 AKARQQQAELAQQEWLQ 135
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 25.2 bits (55), Expect = 6.3
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 29 GTGSKVE-ARKKKKKKKKKKKKKKKKKKN 56
G K AR K +K K K + + N
Sbjct: 12 GNAQKSAMARAKNLEKAKAAGKGSQLEAN 40
>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
[TaxId: 562]}
Length = 346
Score = 26.7 bits (57), Expect = 6.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 7 GTLVYSEEDDNQRLVYARMQVQGTGSKVEAR 37
G L + E+ D + + Q GS +A+
Sbjct: 316 GPLNWDEKGDLKGFDFGVFQWHADGSSTKAK 346
>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Escherichia coli [TaxId: 562]}
Length = 397
Score = 26.5 bits (57), Expect = 6.7
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 89 AQFEEWQRQEDQFHLEQARLRSTIRIQEGRAKPIDLLAKYIGSEAEVDAVEMHEPYTYLT 148
+ + RI R + + +L+ E D + T
Sbjct: 294 VVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLST-EMPERNFDYLLNQRGMFSYT 352
Query: 149 GLAIKDLEDLLEDIKVYM 166
GL+ ++ L E+ VY+
Sbjct: 353 GLSAAQVDRLREEFGVYL 370
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
thermophilus [TaxId: 274]}
Length = 118
Score = 25.1 bits (55), Expect = 8.1
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 37 RKKKKKKKKKKK----KKKKKKKNLCANVKKRRQER 68
RK ++K +KK K K ++ +C V+ ++
Sbjct: 8 RKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKK 43
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 90
Score = 24.9 bits (54), Expect = 8.3
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 31 GSKVEARKKKKKKKKKKKKKKKKKKN 56
GS + K ++ K +K K+ +
Sbjct: 1 GSSGSSGKPSQEGGKGGSEKPKRPVS 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.132 0.378
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,552,329
Number of extensions: 77610
Number of successful extensions: 718
Number of sequences better than 10.0: 1
Number of HSP's gapped: 566
Number of HSP's successfully gapped: 111
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.3 bits)