BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9533
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O77215|UNC4_DROME Homeobox protein unc-4 OS=Drosophila melanogaster GN=unc-4 PE=2
SV=1
Length = 428
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 54/62 (87%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKSLER 63
VWFQNRRAK RK+EHTKKGPGRPAHNA P TCSG+PIP ELK KERARR+KKL K+++R
Sbjct: 129 VWFQNRRAKVRKREHTKKGPGRPAHNAQPQTCSGEPIPPNELKAKERARRRKKLAKAIDR 188
Query: 64 QV 65
Q
Sbjct: 189 QA 190
>sp|Q50D79|UNC4_DANRE Homeobox protein unc-4 homolog OS=Danio rerio GN=uncx PE=2 SV=2
Length = 470
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 43/49 (87%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERAR 52
VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R+E R
Sbjct: 147 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIARRELER 195
>sp|P97830|UNC4_RAT Homeobox protein unc-4 homolog OS=Rattus norvegicus GN=Uncx PE=2
SV=1
Length = 530
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198
>sp|O08934|UNC4_MOUSE Homeobox protein unc-4 homolog OS=Mus musculus GN=Uncx PE=2 SV=2
Length = 530
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 155 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 198
>sp|A6NJT0|UNC4_HUMAN Homeobox protein unc-4 homolog OS=Homo sapiens GN=UNCX PE=2 SV=1
Length = 531
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 40/44 (90%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEELKR 47
VWFQNRRAKWRKKE+TKKGPGRPAHN+HP TCSG+P+ EE+ R
Sbjct: 151 VWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCSGEPMDPEEIAR 194
>sp|Q8VIH1|NOBOX_MOUSE Homeobox protein NOBOX OS=Mus musculus GN=Nobox PE=1 SV=1
Length = 527
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
Query: 3 FVWFQNRRAKWRKKE-----HTKKGPGRPAHNA 30
VWFQNRRAKWRK E TK GP P+ ++
Sbjct: 181 MVWFQNRRAKWRKVEKLNEKETKNGPAAPSADS 213
>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
SV=1
Length = 263
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 4 VWFQNRRAKWRKKEH--TKKGPGRPAHNAH----PVTCSGDPIPAEELKRKERARRQKKL 57
VWFQNRRAKWRK E + + PG A PV P P ++ + K+ A +
Sbjct: 79 VWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQ-- 136
Query: 58 MKSLERQVGP 67
+SL R VGP
Sbjct: 137 -QSLGRTVGP 145
>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
SV=2
Length = 263
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 4 VWFQNRRAKWRKKEH--TKKGPGRPAHNAH----PVTCSGDPIPAEELKRKERARRQKKL 57
VWFQNRRAKWRK E + + PG A PV P P ++ + K+ A +
Sbjct: 79 VWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQTRSKKEALEAQ-- 136
Query: 58 MKSLERQVGP 67
+SL R VGP
Sbjct: 137 -QSLGRTVGP 145
>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
PE=2 SV=1
Length = 263
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 4 VWFQNRRAKWRKKEH--TKKGPGRPAHNAH----PVTCSGDPIPAEELKRKERARRQKKL 57
VWFQNRRAKWRK E + + PG A PV P P ++ + K+ A +
Sbjct: 79 VWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARGKKEALEAQ-- 136
Query: 58 MKSLERQVGP 67
+SL R VGP
Sbjct: 137 -QSLGRTVGP 145
>sp|O08686|BARX2_MOUSE Homeobox protein BarH-like 2 OS=Mus musculus GN=Barx2 PE=2 SV=2
Length = 283
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 4 VWFQNRRAKWRK------KEHTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKL 57
W+QNRR KW+K +E K GRP N+ P + + I AEE K +A+ Q +L
Sbjct: 183 TWYQNRRMKWKKMVLKGGQEAPTKPKGRPKKNSIP---TSEEIEAEE-KMNSQAQSQ-EL 237
Query: 58 MKSLERQVGPLTT 70
++S ERQ P T
Sbjct: 238 LESSERQEEPCDT 250
>sp|P29506|UNC4_CAEEL Homeobox protein unc-4 OS=Caenorhabditis elegans GN=unc-4 PE=1 SV=2
Length = 252
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 4 VWFQNRRAKWRKKEHTKKG 22
VWFQNRRAKWRK+E + G
Sbjct: 134 VWFQNRRAKWRKREQNRNG 152
>sp|O60393|NOBOX_HUMAN Homeobox protein NOBOX OS=Homo sapiens GN=NOBOX PE=1 SV=4
Length = 691
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 1 MSFVWFQNRRAKWRKKE-----HTKKGPGRPAHNAHPVTCSGDPIPAEELKRKERARRQK 55
+++VWFQNRRAKWRK E +K P P + + + + +PA ++ K Q+
Sbjct: 347 VAWVWFQNRRAKWRKMEKLNGKESKDNPAAPGPASSQCSSAAEILPAVPMEPKPDPFPQE 406
Query: 56 KLMKSL 61
+ +
Sbjct: 407 SPLDTF 412
>sp|Q7YRX0|RAX2_BOVIN Retina and anterior neural fold homeobox protein 2 OS=Bos taurus
GN=RAX2 PE=2 SV=1
Length = 184
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 4 VWFQNRRAKWRKKEHTKKGPG 24
VWFQNRRAKWR++E + G G
Sbjct: 73 VWFQNRRAKWRRQERLESGSG 93
>sp|Q96IS3|RAX2_HUMAN Retina and anterior neural fold homeobox protein 2 OS=Homo
sapiens GN=RAX2 PE=1 SV=1
Length = 184
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 4 VWFQNRRAKWRKKEHTKKGPG 24
VWFQNRRAKWR++E + G G
Sbjct: 73 VWFQNRRAKWRRQERLESGSG 93
>sp|A2T711|RAX2_PANTR Retina and anterior neural fold homeobox protein 2 OS=Pan
troglodytes GN=RAX2 PE=3 SV=1
Length = 184
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 4 VWFQNRRAKWRKKEHTKKGPG 24
VWFQNRRAKWR++E + G G
Sbjct: 73 VWFQNRRAKWRRQERLESGSG 93
>sp|A1YG25|RAX2_PANPA Retina and anterior neural fold homeobox protein 2 OS=Pan
paniscus GN=RAX2 PE=3 SV=1
Length = 184
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 4 VWFQNRRAKWRKKEHTKKGPG 24
VWFQNRRAKWR++E + G G
Sbjct: 73 VWFQNRRAKWRRQERLESGSG 93
>sp|A1YEV8|RAX2_GORGO Retina and anterior neural fold homeobox protein 2 OS=Gorilla
gorilla gorilla GN=RAX2 PE=3 SV=1
Length = 184
Score = 35.8 bits (81), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 4 VWFQNRRAKWRKKEHTKKGPG 24
VWFQNRRAKWR++E + G G
Sbjct: 73 VWFQNRRAKWRRQERLESGSG 93
>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
SV=2
Length = 408
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
Query: 4 VWFQNRRAKWRKKEHTKKGP 23
VWFQNRRAKWRK+E K GP
Sbjct: 131 VWFQNRRAKWRKQE--KVGP 148
>sp|A5YC49|NKX63_XENLA Homeobox protein Nkx-6.3 OS=Xenopus laevis GN=nkx6-3 PE=2 SV=1
Length = 254
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPAEE 44
VWFQNRR KWRKK + PG P+ + GD IP++
Sbjct: 179 VWFQNRRTKWRKKSAVET-PGLPSLSTR---APGDLIPSDN 215
>sp|Q9U637|PITX_BRABE Pituitary homeobox x OS=Branchiostoma belcheri GN=Ptx PE=2 SV=1
Length = 331
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAH 31
VWF+NRRAKWRK+E + G + H
Sbjct: 151 VWFKNRRAKWRKRERNQLGEFKNGFGPH 178
>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
Length = 453
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 10/39 (25%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHNAHPVTCSGDPIPA 42
VWFQNRRAKWRK+E + AHP +G P P
Sbjct: 261 VWFQNRRAKWRKRE-------KAGVQAHP---TGLPFPG 289
>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
SV=2
Length = 343
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 4 VWFQNRRAKWRKKEHTKK 21
VWFQNRRAKWRK+E K
Sbjct: 199 VWFQNRRAKWRKRERYGK 216
>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
Length = 566
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 378 VWFQNRRAKWRKRE 391
>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
Length = 562
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 374 VWFQNRRAKWRKRE 387
>sp|P14837|PDX1_XENLA Pancreas/duodenum homeobox protein 1 OS=Xenopus laevis GN=pdx1 PE=2
SV=2
Length = 271
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGR-PAHNAHPVTCSGD 38
+WFQNRR KW+K+E K+G G P ++ V S D
Sbjct: 193 IWFQNRRMKWKKEEDKKRGRGSDPEQDS--VVSSAD 226
>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
Length = 327
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 4 VWFQNRRAKWRKKEHTKKG 22
VWFQNRRAKWR++E G
Sbjct: 181 VWFQNRRAKWRRQEKMDTG 199
>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
SV=1
Length = 343
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/18 (77%), Positives = 15/18 (83%)
Query: 4 VWFQNRRAKWRKKEHTKK 21
VWFQNRRAKWRK+E K
Sbjct: 199 VWFQNRRAKWRKRERYGK 216
>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
Length = 397
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 246 VWFQNRRAKWRKRE 259
>sp|Q61412|VSX2_MOUSE Visual system homeobox 2 OS=Mus musculus GN=Vsx2 PE=1 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 194 VWFQNRRAKWRKRE 207
>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
SV=2
Length = 411
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 260 VWFQNRRAKWRKRE 273
>sp|P58304|VSX2_HUMAN Visual system homeobox 2 OS=Homo sapiens GN=VSX2 PE=1 SV=1
Length = 361
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 194 VWFQNRRAKWRKRE 207
>sp|P41935|HM10_CAEEL Homeobox protein ceh-10 OS=Caenorhabditis elegans GN=ceh-10 PE=2
SV=1
Length = 344
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/16 (87%), Positives = 14/16 (87%)
Query: 4 VWFQNRRAKWRKKEHT 19
VWFQNRRAKWRK E T
Sbjct: 182 VWFQNRRAKWRKTEKT 197
>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
Length = 564
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 376 VWFQNRRAKWRKRE 389
>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
SV=1
Length = 399
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 248 VWFQNRRAKWRKRE 261
>sp|Q0P031|VSX1_XENLA Visual system homeobox 1 OS=Xenopus laevis GN=vsx1 PE=2 SV=1
Length = 344
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 196 VWFQNRRAKWRKRE 209
>sp|Q9I9A3|VSX2_ORYLA Visual system homeobox 2 OS=Oryzias latipes GN=vsx2 PE=2 SV=1
Length = 393
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 208 VWFQNRRAKWRKRE 221
>sp|Q9IAL1|VSX2_CHICK Visual system homeobox 2 OS=Gallus gallus GN=VSX2 PE=2 SV=1
Length = 377
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 213 VWFQNRRAKWRKRE 226
>sp|Q9NZR4|VSX1_HUMAN Visual system homeobox 1 OS=Homo sapiens GN=VSX1 PE=1 SV=2
Length = 365
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 210 VWFQNRRAKWRKRE 223
>sp|O42477|VSX2_DANRE Visual system homeobox 2 OS=Danio rerio GN=vsx2 PE=2 SV=3
Length = 393
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 211 VWFQNRRAKWRKRE 224
>sp|Q9GMA3|VSX1_BOVIN Visual system homeobox 1 OS=Bos taurus GN=VSX1 PE=2 SV=1
Length = 365
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 210 VWFQNRRAKWRKRE 223
>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
Length = 341
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 194 VWFQNRRAKWRKRE 207
>sp|Q91574|ALX1_XENLA ALX homeobox protein 1 OS=Xenopus laevis GN=alx1 PE=2 SV=1
Length = 335
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 187 VWFQNRRAKWRKRE 200
>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla gorilla GN=HOXB7 PE=3
SV=1
Length = 217
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 4 VWFQNRRAKWRKKEHTKKGPGRPAHN 29
+WFQNRR KW KKE+ GPG A +
Sbjct: 183 IWFQNRRMKW-KKENKTAGPGTTAQD 207
>sp|Q91V10|VSX1_MOUSE Visual system homeobox 1 OS=Mus musculus GN=Vsx1 PE=2 SV=1
Length = 363
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 217 VWFQNRRAKWRKRE 230
>sp|Q63087|ALX1_RAT ALX homeobox protein 1 OS=Rattus norvegicus GN=Alx1 PE=2 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 178 VWFQNRRAKWRKRE 191
>sp|Q8C8B0|ALX1_MOUSE ALX homeobox protein 1 OS=Mus musculus GN=Alx1 PE=1 SV=1
Length = 326
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 178 VWFQNRRAKWRKRE 191
>sp|O42250|VSX1_DANRE Visual system homeobox 1 OS=Danio rerio GN=vsx1 PE=1 SV=2
Length = 344
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 197 VWFQNRRAKWRKRE 210
>sp|Q15699|ALX1_HUMAN ALX homeobox protein 1 OS=Homo sapiens GN=ALX1 PE=1 SV=2
Length = 326
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 178 VWFQNRRAKWRKRE 191
>sp|Q9IAL2|VSX1_CHICK Visual system homeobox 1 OS=Gallus gallus GN=VSX1 PE=2 SV=1
Length = 350
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/14 (92%), Positives = 14/14 (100%)
Query: 4 VWFQNRRAKWRKKE 17
VWFQNRRAKWRK+E
Sbjct: 203 VWFQNRRAKWRKRE 216
>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
SV=2
Length = 873
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 4 VWFQNRRAKWRKKEHTKK---GPGRPAHNAHPVTCSGDPIPAE 43
VWFQNRRAKWR++E ++ G H + C +P +
Sbjct: 574 VWFQNRRAKWRRQEKSESLRLGLTHFTQLPHRLGCGASGLPVD 616
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,264,782
Number of Sequences: 539616
Number of extensions: 1078398
Number of successful extensions: 4893
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 4480
Number of HSP's gapped (non-prelim): 462
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)