Query psy9533
Match_columns 73
No_of_seqs 103 out of 606
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 22:03:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9533.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9533hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0489|consensus 99.4 6.8E-14 1.5E-18 100.1 2.0 22 2-23 203-224 (261)
2 KOG0487|consensus 99.1 1.2E-11 2.7E-16 91.0 1.5 20 2-21 279-298 (308)
3 KOG0488|consensus 99.1 1.3E-11 2.8E-16 90.6 0.2 17 2-18 216-232 (309)
4 KOG0848|consensus 99.0 7.6E-11 1.7E-15 86.2 0.5 19 2-20 243-261 (317)
5 KOG0850|consensus 99.0 4.3E-10 9.4E-15 80.5 3.1 19 2-20 166-184 (245)
6 KOG0484|consensus 98.9 1.4E-10 3E-15 75.2 -0.2 18 2-19 61-78 (125)
7 KOG0494|consensus 98.8 8.4E-10 1.8E-14 80.8 1.4 20 2-21 185-204 (332)
8 KOG0842|consensus 98.8 8.7E-10 1.9E-14 81.3 1.4 21 2-22 197-217 (307)
9 KOG0485|consensus 98.8 1E-09 2.3E-14 78.6 0.5 15 2-16 148-162 (268)
10 KOG0491|consensus 98.8 2.7E-09 5.8E-14 73.7 1.8 23 2-24 144-166 (194)
11 KOG0844|consensus 98.7 3.5E-09 7.5E-14 79.0 0.5 19 1-19 224-242 (408)
12 KOG0847|consensus 98.7 6E-09 1.3E-13 74.9 1.6 17 2-18 211-227 (288)
13 KOG0483|consensus 98.7 1.6E-09 3.4E-14 75.8 -1.4 16 1-16 93-108 (198)
14 KOG0492|consensus 98.6 8.3E-09 1.8E-13 73.5 0.8 18 2-19 188-205 (246)
15 KOG0843|consensus 98.6 1.1E-08 2.4E-13 71.2 1.2 19 2-20 146-164 (197)
16 KOG2251|consensus 98.4 1.5E-07 3.2E-12 67.1 2.2 19 1-19 80-98 (228)
17 KOG0490|consensus 98.4 2.1E-07 4.6E-12 63.2 2.2 18 1-18 103-120 (235)
18 KOG4577|consensus 98.3 1.1E-07 2.3E-12 70.7 0.5 19 1-19 210-228 (383)
19 COG5576 Homeodomain-containing 98.3 3.2E-07 6.9E-12 62.1 2.0 19 2-20 95-113 (156)
20 KOG0486|consensus 97.9 3.1E-06 6.8E-11 63.2 0.5 19 2-20 156-174 (351)
21 KOG0493|consensus 97.8 3.7E-06 8.1E-11 61.9 0.2 17 2-18 290-306 (342)
22 KOG0849|consensus 97.0 0.00029 6.2E-09 52.7 1.4 17 2-18 220-236 (354)
23 KOG3802|consensus 95.5 0.0056 1.2E-07 46.9 1.0 18 1-18 337-354 (398)
24 KOG0490|consensus 94.3 0.05 1.1E-06 36.8 3.1 17 2-18 197-213 (235)
25 KOG0775|consensus 83.8 0.97 2.1E-05 33.7 2.4 14 2-15 220-233 (304)
26 KOG1168|consensus 80.0 0.68 1.5E-05 35.1 0.5 18 1-18 352-369 (385)
27 KOG1146|consensus 79.5 1.1 2.4E-05 39.2 1.6 17 2-18 947-963 (1406)
28 KOG3623|consensus 66.4 3.2 6.9E-05 35.0 1.3 21 1-21 599-619 (1007)
29 PF11516 DUF3220: Protein of u 46.4 3.4 7.4E-05 25.9 -1.3 7 2-8 33-39 (106)
30 KOG4752|consensus 44.4 11 0.00025 18.2 0.7 7 10-16 2-8 (26)
31 KOG3755|consensus 43.7 8.1 0.00018 31.9 0.1 16 2-17 743-758 (769)
32 KOG3755|consensus 41.1 37 0.0008 28.3 3.4 17 2-18 559-575 (769)
33 KOG0774|consensus 27.9 59 0.0013 24.5 2.5 15 2-16 235-249 (334)
34 PF09292 Neil1-DNA_bind: Endon 23.7 23 0.0005 18.9 -0.2 6 3-8 27-32 (39)
35 PF08452 DNAP_B_exo_N: DNA pol 23.4 22 0.00048 16.8 -0.3 7 4-10 7-13 (22)
36 PF11833 DUF3353: Protein of u 22.9 19 0.0004 25.1 -0.9 7 4-10 129-135 (194)
37 KOG0773|consensus 22.6 26 0.00057 25.5 -0.2 13 2-14 286-298 (342)
38 COG0030 KsgA Dimethyladenosine 20.1 33 0.00071 25.0 -0.1 17 2-18 203-219 (259)
No 1
>KOG0489|consensus
Probab=99.41 E-value=6.8e-14 Score=100.05 Aligned_cols=22 Identities=45% Similarity=0.977 Sum_probs=19.6
Q ss_pred ccccCchhHHHHHhhhcCCCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKKGP 23 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~~~ 23 (73)
||||||||||||||.++.....
T Consensus 203 IKIWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 203 IKIWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccc
Confidence 8999999999999988877655
No 2
>KOG0487|consensus
Probab=99.14 E-value=1.2e-11 Score=91.00 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=17.5
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|||||||||||.||..+...
T Consensus 279 VKIWFQNRRMK~KK~~re~r 298 (308)
T KOG0487|consen 279 VKIWFQNRRMKEKKVNRENR 298 (308)
T ss_pred eeeeehhhhhHHhhhhhhhh
Confidence 99999999999999886444
No 3
>KOG0488|consensus
Probab=99.10 E-value=1.3e-11 Score=90.57 Aligned_cols=17 Identities=47% Similarity=1.113 Sum_probs=15.6
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
||+|||||||||||+..
T Consensus 216 VKtWfQNRRtKWKrq~a 232 (309)
T KOG0488|consen 216 VKTWFQNRRTKWKRQTA 232 (309)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 99999999999999844
No 4
>KOG0848|consensus
Probab=99.00 E-value=7.6e-11 Score=86.19 Aligned_cols=19 Identities=58% Similarity=0.884 Sum_probs=17.7
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|||||||||||.||.++.+
T Consensus 243 VKIWFQNRRAKERK~nKKk 261 (317)
T KOG0848|consen 243 VKIWFQNRRAKERKDNKKK 261 (317)
T ss_pred hhHhhhhhhHHHHHHHHHH
Confidence 8999999999999998776
No 5
>KOG0850|consensus
Probab=98.96 E-value=4.3e-10 Score=80.46 Aligned_cols=19 Identities=42% Similarity=0.847 Sum_probs=16.9
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|||||||||.|+||..+-+
T Consensus 166 VKIWFQNrRSK~KKl~k~g 184 (245)
T KOG0850|consen 166 VKIWFQNRRSKFKKLKKQG 184 (245)
T ss_pred hhhhhhhhHHHHHHHHhcC
Confidence 9999999999999987733
No 6
>KOG0484|consensus
Probab=98.93 E-value=1.4e-10 Score=75.18 Aligned_cols=18 Identities=67% Similarity=1.116 Sum_probs=16.6
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+|||||||||+|||++.
T Consensus 61 VQVWFQNRRAKfRKQEr~ 78 (125)
T KOG0484|consen 61 VQVWFQNRRAKFRKQERA 78 (125)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 899999999999999873
No 7
>KOG0494|consensus
Probab=98.85 E-value=8.4e-10 Score=80.77 Aligned_cols=20 Identities=65% Similarity=1.054 Sum_probs=17.5
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+||||||||||||.++.-.
T Consensus 185 IqVWfQNRRAKWRk~Ek~wg 204 (332)
T KOG0494|consen 185 IQVWFQNRRAKWRKTEKRWG 204 (332)
T ss_pred hhHHhhhhhHHhhhhhhhcC
Confidence 79999999999999987543
No 8
>KOG0842|consensus
Probab=98.85 E-value=8.7e-10 Score=81.29 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=18.6
Q ss_pred ccccCchhHHHHHhhhcCCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKKG 22 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~~ 22 (73)
|||||||||.|.||+...+..
T Consensus 197 VKIWFQNrRYK~KR~~~dk~~ 217 (307)
T KOG0842|consen 197 VKIWFQNRRYKTKRQQKDKAL 217 (307)
T ss_pred eeeeeecchhhhhhhhhhhhh
Confidence 999999999999999876653
No 9
>KOG0485|consensus
Probab=98.80 E-value=1e-09 Score=78.57 Aligned_cols=15 Identities=53% Similarity=1.329 Sum_probs=14.7
Q ss_pred ccccCchhHHHHHhh
Q psy9533 2 SFVWFQNRRAKWRKK 16 (73)
Q Consensus 2 VKIWFQNRRaKwKKq 16 (73)
|||||||||-||||+
T Consensus 148 VKIWFQNRRnKwKRq 162 (268)
T KOG0485|consen 148 VKIWFQNRRNKWKRQ 162 (268)
T ss_pred hhhhhhhhhHHHHHH
Confidence 899999999999998
No 10
>KOG0491|consensus
Probab=98.77 E-value=2.7e-09 Score=73.72 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=19.6
Q ss_pred ccccCchhHHHHHhhhcCCCCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKKGPG 24 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~~~~ 24 (73)
||.||||||||.||+.+...+.+
T Consensus 144 VKTWFQNrRMK~Kk~~r~~~p~n 166 (194)
T KOG0491|consen 144 VKTWFQNRRMKHKKQQRNNQPKN 166 (194)
T ss_pred HHHHHHHHHHHHHHHHhccCCCC
Confidence 89999999999999987666443
No 11
>KOG0844|consensus
Probab=98.70 E-value=3.5e-09 Score=79.03 Aligned_cols=19 Identities=42% Similarity=0.669 Sum_probs=16.6
Q ss_pred CccccCchhHHHHHhhhcC
Q psy9533 1 MSFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~~ 19 (73)
+|||||||||||.|||.-.
T Consensus 224 TIKVWFQNRRMKDKRQRla 242 (408)
T KOG0844|consen 224 TIKVWFQNRRMKDKRQRLA 242 (408)
T ss_pred eeehhhhhchhhhhhhhhh
Confidence 5899999999999998543
No 12
>KOG0847|consensus
Probab=98.69 E-value=6e-09 Score=74.94 Aligned_cols=17 Identities=71% Similarity=1.271 Sum_probs=15.1
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|||||||||.||||...
T Consensus 211 vkVWFQNRRTKWRKkhA 227 (288)
T KOG0847|consen 211 VKVWFQNRRTKWRKKHA 227 (288)
T ss_pred HHHHHhcchhhhhhhhc
Confidence 89999999999999643
No 13
>KOG0483|consensus
Probab=98.69 E-value=1.6e-09 Score=75.76 Aligned_cols=16 Identities=63% Similarity=1.279 Sum_probs=14.4
Q ss_pred CccccCchhHHHHHhh
Q psy9533 1 MSFVWFQNRRAKWRKK 16 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq 16 (73)
+|+||||||||+||..
T Consensus 93 QVavWFQNRRARwK~k 108 (198)
T KOG0483|consen 93 QVAVWFQNRRARWKTK 108 (198)
T ss_pred HHHHHHhhccccccch
Confidence 5999999999999954
No 14
>KOG0492|consensus
Probab=98.63 E-value=8.3e-09 Score=73.47 Aligned_cols=18 Identities=44% Similarity=0.813 Sum_probs=15.8
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|||||||||||-||....
T Consensus 188 VKIWFQNRRAKaKRlQea 205 (246)
T KOG0492|consen 188 VKIWFQNRRAKAKRLQEA 205 (246)
T ss_pred eehhhhhhhHHHHHHHHH
Confidence 999999999999987543
No 15
>KOG0843|consensus
Probab=98.62 E-value=1.1e-08 Score=71.20 Aligned_cols=19 Identities=42% Similarity=0.816 Sum_probs=16.8
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|||||||||.|.||.....
T Consensus 146 VkvWFQNRRtk~kr~~~e~ 164 (197)
T KOG0843|consen 146 VKVWFQNRRTKHKRMQQED 164 (197)
T ss_pred hhhhhhhhhHHHHHHHHHh
Confidence 9999999999999876654
No 16
>KOG2251|consensus
Probab=98.40 E-value=1.5e-07 Score=67.10 Aligned_cols=19 Identities=47% Similarity=0.884 Sum_probs=16.8
Q ss_pred CccccCchhHHHHHhhhcC
Q psy9533 1 MSFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~~ 19 (73)
.|||||.|||||||++.+-
T Consensus 80 rVqVWFKNRRAK~r~qq~q 98 (228)
T KOG2251|consen 80 RVQVWFKNRRAKCRRQQQQ 98 (228)
T ss_pred hhhhhhccccchhhHhhhh
Confidence 3999999999999988764
No 17
>KOG0490|consensus
Probab=98.36 E-value=2.1e-07 Score=63.16 Aligned_cols=18 Identities=67% Similarity=0.905 Sum_probs=16.4
Q ss_pred CccccCchhHHHHHhhhc
Q psy9533 1 MSFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~ 18 (73)
.|+|||||||+||+++++
T Consensus 103 rVqvwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 103 RVQVWFQNRRAKDRKEER 120 (235)
T ss_pred eeehhhhhhcHhhhhhhc
Confidence 489999999999999875
No 18
>KOG4577|consensus
Probab=98.35 E-value=1.1e-07 Score=70.73 Aligned_cols=19 Identities=47% Similarity=0.788 Sum_probs=16.3
Q ss_pred CccccCchhHHHHHhhhcC
Q psy9533 1 MSFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~~ 19 (73)
.|+|||||||||.||..+.
T Consensus 210 VVQVWFQNRRAKEKRLKKD 228 (383)
T KOG4577|consen 210 VVQVWFQNRRAKEKRLKKD 228 (383)
T ss_pred ehhhhhhhhhHHHHhhhhh
Confidence 4899999999999987553
No 19
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=98.30 E-value=3.2e-07 Score=62.07 Aligned_cols=19 Identities=53% Similarity=0.830 Sum_probs=16.4
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+|-|+....+
T Consensus 95 VqIWFQNkR~~~k~~~~~~ 113 (156)
T COG5576 95 VQIWFQNKRAKEKKKRSGK 113 (156)
T ss_pred hhhhhchHHHHHHHhcccc
Confidence 8999999999999875543
No 20
>KOG0486|consensus
Probab=97.89 E-value=3.1e-06 Score=63.20 Aligned_cols=19 Identities=63% Similarity=1.256 Sum_probs=16.8
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|.|||.|||+||||.++..
T Consensus 156 vrvwfknrrakwrkrErN~ 174 (351)
T KOG0486|consen 156 VRVWFKNRRAKWRKRERNQ 174 (351)
T ss_pred hhhhcccchhhhhhhhhhH
Confidence 8899999999999987744
No 21
>KOG0493|consensus
Probab=97.84 E-value=3.7e-06 Score=61.92 Aligned_cols=17 Identities=47% Similarity=0.812 Sum_probs=15.0
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|||||||.|+|-||-..
T Consensus 290 IKIWFQNKRAKiKKsTg 306 (342)
T KOG0493|consen 290 IKIWFQNKRAKIKKSTG 306 (342)
T ss_pred hhHHhhhhhhhhhhccC
Confidence 89999999999999543
No 22
>KOG0849|consensus
Probab=97.02 E-value=0.00029 Score=52.72 Aligned_cols=17 Identities=65% Similarity=1.304 Sum_probs=15.6
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|.|||+|||+||+|+..
T Consensus 220 iqvwf~nrra~~rr~~~ 236 (354)
T KOG0849|consen 220 VQVWFQNRRAKWRRQHR 236 (354)
T ss_pred HHHHHhhhhhhhhhccc
Confidence 78999999999999874
No 23
>KOG3802|consensus
Probab=95.51 E-value=0.0056 Score=46.94 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.9
Q ss_pred CccccCchhHHHHHhhhc
Q psy9533 1 MSFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~ 18 (73)
.|.|||=|||=|.||...
T Consensus 337 VVRVWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 337 VVRVWFCNRRQKEKRITP 354 (398)
T ss_pred eEEEEeeccccccccCCC
Confidence 489999999999998765
No 24
>KOG0490|consensus
Probab=94.34 E-value=0.05 Score=36.76 Aligned_cols=17 Identities=65% Similarity=1.005 Sum_probs=15.0
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|.|||||+|++.++...
T Consensus 197 ~q~~~~~~~~~~~~~~~ 213 (235)
T KOG0490|consen 197 IQVWFQNRRAKLRKHKR 213 (235)
T ss_pred hhhhcccHHHHHHhhcc
Confidence 78999999999998655
No 25
>KOG0775|consensus
Probab=83.85 E-value=0.97 Score=33.71 Aligned_cols=14 Identities=43% Similarity=0.750 Sum_probs=11.7
Q ss_pred ccccCchhHHHHHh
Q psy9533 2 SFVWFQNRRAKWRK 15 (73)
Q Consensus 2 VKIWFQNRRaKwKK 15 (73)
|-.||.|||-..|-
T Consensus 220 VsNWFKNRRQRDRa 233 (304)
T KOG0775|consen 220 VSNWFKNRRQRDRA 233 (304)
T ss_pred hhhhhhhhhhhhhh
Confidence 56799999988883
No 26
>KOG1168|consensus
Probab=80.04 E-value=0.68 Score=35.06 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=15.0
Q ss_pred CccccCchhHHHHHhhhc
Q psy9533 1 MSFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~ 18 (73)
.|.|||=|-|-|.||...
T Consensus 352 VVRVWFCNQRQKQKRm~~ 369 (385)
T KOG1168|consen 352 VVRVWFCNQRQKQKRMKR 369 (385)
T ss_pred eEEEEeeccHHHHHHhhh
Confidence 489999999999988543
No 27
>KOG1146|consensus
Probab=79.54 E-value=1.1 Score=39.24 Aligned_cols=17 Identities=53% Similarity=0.743 Sum_probs=15.0
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|.|||||-|.|-+|..-
T Consensus 947 i~vw~qna~~~s~k~~~ 963 (1406)
T KOG1146|consen 947 IQVWFQNARAKSKKAKL 963 (1406)
T ss_pred hHHhhhhhhhhhhhhhh
Confidence 78999999999998744
No 28
>KOG3623|consensus
Probab=66.45 E-value=3.2 Score=35.01 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.1
Q ss_pred CccccCchhHHHHHhhhcCCC
Q psy9533 1 MSFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 1 ~VKIWFQNRRaKwKKq~~~~~ 21 (73)
.||+||+|++++....++...
T Consensus 599 vvk~wfE~~~a~e~sv~rsps 619 (1007)
T KOG3623|consen 599 VVKAWFEDEEAEEMSVERSPS 619 (1007)
T ss_pred HHHHHHHhhhhhhhhhccCcc
Confidence 389999999999988765444
No 29
>PF11516 DUF3220: Protein of unknown function (DUF3120); InterPro: IPR021597 This family of proteins with unknown function appears to be restricted to Bordetella. ; PDB: 2JPF_A.
Probab=46.37 E-value=3.4 Score=25.89 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=6.3
Q ss_pred ccccCch
Q psy9533 2 SFVWFQN 8 (73)
Q Consensus 2 VKIWFQN 8 (73)
||||.||
T Consensus 33 vkvwmqn 39 (106)
T PF11516_consen 33 VKVWMQN 39 (106)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7899998
No 30
>KOG4752|consensus
Probab=44.37 E-value=11 Score=18.22 Aligned_cols=7 Identities=100% Similarity=1.692 Sum_probs=4.9
Q ss_pred HHHHHhh
Q psy9533 10 RAKWRKK 16 (73)
Q Consensus 10 RaKwKKq 16 (73)
|+||+|.
T Consensus 2 r~kwrkk 8 (26)
T KOG4752|consen 2 RAKWRKK 8 (26)
T ss_pred chHHHHH
Confidence 6788764
No 31
>KOG3755|consensus
Probab=43.73 E-value=8.1 Score=31.94 Aligned_cols=16 Identities=25% Similarity=0.580 Sum_probs=13.9
Q ss_pred ccccCchhHHHHHhhh
Q psy9533 2 SFVWFQNRRAKWRKKE 17 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~ 17 (73)
|+.||.|||.+.++.+
T Consensus 743 ~~~~fk~~~ee~~~~k 758 (769)
T KOG3755|consen 743 VQFWFKVRREEEKRLK 758 (769)
T ss_pred hHHHHHHHHHHHhhhh
Confidence 6789999999998854
No 32
>KOG3755|consensus
Probab=41.12 E-value=37 Score=28.27 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=14.4
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
+++||-||+++.++.-.
T Consensus 559 ~~l~q~er~a~~~~~~N 575 (769)
T KOG3755|consen 559 LKLPQKERDAIYERESN 575 (769)
T ss_pred hccchhhhhHHHhhhcc
Confidence 68999999999988533
No 33
>KOG0774|consensus
Probab=27.94 E-value=59 Score=24.51 Aligned_cols=15 Identities=33% Similarity=0.846 Sum_probs=13.0
Q ss_pred ccccCchhHHHHHhh
Q psy9533 2 SFVWFQNRRAKWRKK 16 (73)
Q Consensus 2 VKIWFQNRRaKwKKq 16 (73)
|-.||-|.|...||.
T Consensus 235 vsnwfgnkrIrykK~ 249 (334)
T KOG0774|consen 235 VSNWFGNKRIRYKKN 249 (334)
T ss_pred hccccccceeehhhh
Confidence 557999999999986
No 34
>PF09292 Neil1-DNA_bind: Endonuclease VIII-like 1, DNA bind; InterPro: IPR015371 This domain is predominantly found in Endonuclease VIII-like 1 proteins and adopts a glucocorticoid receptor-like fold. Structural analysis reveals a zincless finger motif that is required for glycosylase activity []. ; PDB: 1TDH_A.
Probab=23.73 E-value=23 Score=18.94 Aligned_cols=6 Identities=50% Similarity=1.398 Sum_probs=4.4
Q ss_pred cccCch
Q psy9533 3 FVWFQN 8 (73)
Q Consensus 3 KIWFQN 8 (73)
-||||.
T Consensus 27 TiWFqG 32 (39)
T PF09292_consen 27 TIWFQG 32 (39)
T ss_dssp EEEESS
T ss_pred EEEeeC
Confidence 389985
No 35
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=23.43 E-value=22 Score=16.76 Aligned_cols=7 Identities=43% Similarity=1.203 Sum_probs=5.5
Q ss_pred ccCchhH
Q psy9533 4 VWFQNRR 10 (73)
Q Consensus 4 IWFQNRR 10 (73)
.||-||.
T Consensus 7 NWFE~~g 13 (22)
T PF08452_consen 7 NWFESRG 13 (22)
T ss_pred ehhhhCC
Confidence 5999875
No 36
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=22.87 E-value=19 Score=25.06 Aligned_cols=7 Identities=43% Similarity=1.132 Sum_probs=6.1
Q ss_pred ccCchhH
Q psy9533 4 VWFQNRR 10 (73)
Q Consensus 4 IWFQNRR 10 (73)
|||+|||
T Consensus 129 iyfl~~K 135 (194)
T PF11833_consen 129 IYFLNRK 135 (194)
T ss_pred HHHHHHh
Confidence 7999986
No 37
>KOG0773|consensus
Probab=22.60 E-value=26 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.557 Sum_probs=10.0
Q ss_pred ccccCchhHHHHH
Q psy9533 2 SFVWFQNRRAKWR 14 (73)
Q Consensus 2 VKIWFQNRRaKwK 14 (73)
|.+||-|.|-+--
T Consensus 286 v~NWFINaR~R~w 298 (342)
T KOG0773|consen 286 VSNWFINARVRLW 298 (342)
T ss_pred CCchhhhcccccC
Confidence 6799999885543
No 38
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=20.13 E-value=33 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.9
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|+.||++||.+-++.-+
T Consensus 203 ~~~~F~~RRKtl~n~l~ 219 (259)
T COG0030 203 VKAAFSQRRKTLRNNLK 219 (259)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 67899999998887544
Done!