Query psy9533
Match_columns 73
No_of_seqs 103 out of 606
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:03:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9533.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9533hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzz_A Penetratin conjugated G 99.4 1.6E-14 5.6E-19 76.5 0.4 18 2-19 3-20 (37)
2 2ecb_A Zinc fingers and homeob 99.2 4.4E-12 1.5E-16 77.8 1.8 20 2-21 55-74 (89)
3 2dms_A Homeobox protein OTX2; 99.0 4.4E-11 1.5E-15 70.7 1.2 20 2-21 51-70 (80)
4 1ahd_P Antennapedia protein mu 99.0 3.2E-11 1.1E-15 69.6 0.5 21 2-22 46-66 (68)
5 2dmq_A LIM/homeobox protein LH 99.0 9.3E-11 3.2E-15 69.1 1.3 20 2-21 51-70 (80)
6 1nk2_P Homeobox protein VND; h 99.0 6.9E-11 2.4E-15 69.5 0.3 23 2-24 53-75 (77)
7 2dmp_A Zinc fingers and homeob 99.0 1.2E-10 4.1E-15 70.6 1.4 20 2-21 57-76 (89)
8 1uhs_A HOP, homeodomain only p 99.0 1.2E-10 4E-15 67.6 1.1 18 2-19 46-63 (72)
9 2hi3_A Homeodomain-only protei 99.0 1.3E-10 4.4E-15 67.7 1.0 18 2-19 47-64 (73)
10 2cue_A Paired box protein PAX6 98.9 3.9E-11 1.3E-15 71.0 -1.9 19 2-20 51-69 (80)
11 2da5_A Zinc fingers and homeob 98.9 1.3E-10 4.4E-15 68.2 0.1 20 2-21 51-70 (75)
12 2l9r_A Homeobox protein NKX-3. 98.9 7.8E-11 2.7E-15 69.0 -1.1 17 2-18 48-64 (69)
13 1yz8_P Pituitary homeobox 2; D 98.9 2.1E-10 7.3E-15 65.9 0.4 18 2-19 47-64 (68)
14 3a01_A Homeodomain-containing 98.9 1.9E-10 6.6E-15 70.1 0.1 20 2-21 61-80 (93)
15 2cuf_A FLJ21616 protein; homeo 98.9 4E-10 1.4E-14 68.6 1.3 19 2-20 66-84 (95)
16 1ftt_A TTF-1 HD, thyroid trans 98.9 2.4E-10 8E-15 65.8 0.2 19 2-20 46-64 (68)
17 2da4_A Hypothetical protein DK 98.9 3.9E-10 1.3E-14 66.6 1.0 16 2-17 56-71 (80)
18 1zq3_P PRD-4, homeotic bicoid 98.9 3.2E-10 1.1E-14 65.2 0.5 19 2-20 46-64 (68)
19 2ly9_A Zinc fingers and homeob 98.8 3.2E-10 1.1E-14 65.9 0.2 18 2-19 50-67 (74)
20 2dn0_A Zinc fingers and homeob 98.8 2.8E-10 9.7E-15 66.7 -0.5 19 2-20 52-70 (76)
21 1b72_B Protein (PBX1); homeodo 98.7 1.6E-10 5.6E-15 69.0 -3.4 19 2-20 48-66 (87)
22 2ecc_A Homeobox and leucine zi 98.7 8.2E-10 2.8E-14 66.1 -0.4 17 2-18 47-63 (76)
23 2k40_A Homeobox expressed in E 98.7 8.6E-10 2.9E-14 63.1 -0.5 17 2-18 45-61 (67)
24 3nar_A ZHX1, zinc fingers and 98.7 9.3E-10 3.2E-14 67.2 -0.7 15 2-16 69-83 (96)
25 1puf_B PRE-B-cell leukemia tra 98.7 2.3E-09 7.9E-14 62.1 0.1 18 2-19 48-65 (73)
26 2dmn_A Homeobox protein TGIF2L 98.6 6.9E-09 2.4E-13 61.9 1.3 18 2-19 54-71 (83)
27 1le8_B Mating-type protein alp 98.6 3.6E-09 1.2E-13 63.0 -0.7 16 2-17 49-64 (83)
28 2da6_A Hepatocyte nuclear fact 98.6 5.4E-09 1.8E-13 65.6 -0.2 19 2-20 71-89 (102)
29 3k2a_A Homeobox protein MEIS2; 98.5 1.5E-08 5E-13 58.4 -0.6 16 2-17 45-60 (67)
30 1lfb_A Liver transcription fac 98.4 1.9E-08 6.3E-13 62.4 -1.9 16 2-17 74-89 (99)
31 2d5v_A Hepatocyte nuclear fact 98.3 2.3E-08 8E-13 65.6 -2.0 17 2-18 141-157 (164)
32 2lk2_A Homeobox protein TGIF1; 98.1 4.9E-07 1.7E-11 55.4 0.6 17 2-18 52-68 (89)
33 2da7_A Zinc finger homeobox pr 97.8 1.6E-06 5.3E-11 51.5 -0.7 11 2-12 49-59 (71)
34 2jpf_A Hypothetical protein; a 42.5 2.8 9.4E-05 26.1 -1.3 7 2-8 54-60 (127)
35 1y4m_A HERV-FRD_6P24.1 proviru 30.0 10 0.00034 20.8 -0.2 7 5-11 23-29 (53)
36 1mof_A Moloney murine leukemia 28.8 11 0.00037 20.8 -0.2 6 6-11 26-31 (55)
37 2jqo_A Hypothetical protein YO 22.7 15 0.00052 22.8 -0.3 7 1-7 76-82 (108)
38 1etf_B REV peptide; complex (R 22.5 35 0.0012 16.1 1.0 11 7-17 7-17 (26)
No 1
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=99.42 E-value=1.6e-14 Score=76.54 Aligned_cols=18 Identities=50% Similarity=1.090 Sum_probs=16.3
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
||||||||||||||....
T Consensus 3 VkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 3 IKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp TTTTTTCSHHHHTSSHHH
T ss_pred ceeccHHHHHHHHHHhHH
Confidence 899999999999998664
No 2
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=4.4e-12 Score=77.78 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=17.1
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+||||||||||||.++...
T Consensus 55 VkvWFqNRR~k~rk~~~~~~ 74 (89)
T 2ecb_A 55 IDAWFTEKKKSKALKEEKME 74 (89)
T ss_dssp HHHHHHHHHHHHHSCCSCCC
T ss_pred CeecccccchHHHHHHHHhh
Confidence 89999999999998766554
No 3
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=4.4e-11 Score=70.72 Aligned_cols=20 Identities=45% Similarity=0.898 Sum_probs=17.1
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+||||||||||||..+...
T Consensus 51 V~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 51 VQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp HHHHHHHHHTHHHHTTCSCC
T ss_pred hhhhhHHHhHHhhHHHHccC
Confidence 89999999999999766443
No 4
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.03 E-value=3.2e-11 Score=69.58 Aligned_cols=21 Identities=52% Similarity=1.018 Sum_probs=17.8
Q ss_pred ccccCchhHHHHHhhhcCCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKKG 22 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~~ 22 (73)
|+||||||||||||..+....
T Consensus 46 V~vWFqNRR~k~kk~~~~~~~ 66 (68)
T 1ahd_P 46 IKIWFQNRRMKWKKENKTKGE 66 (68)
T ss_dssp HHHHHHHHHHHHHHHSCCCSS
T ss_pred hhHHhHHHHhHHhHhccccCC
Confidence 899999999999998765543
No 5
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=9.3e-11 Score=69.10 Aligned_cols=20 Identities=45% Similarity=0.762 Sum_probs=17.1
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+|||||||+||||......
T Consensus 51 V~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 51 LQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHccHHHHHHHHHHHHHHh
Confidence 89999999999999866443
No 6
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=98.97 E-value=6.9e-11 Score=69.52 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=18.7
Q ss_pred ccccCchhHHHHHhhhcCCCCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKKGPG 24 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~~~~ 24 (73)
|+|||||||+|+||........+
T Consensus 53 V~~WFqNRR~k~kr~~~~~~~~~ 75 (77)
T 1nk2_P 53 VKIWFQNHRYKTKRAQNEKGYEG 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHhHHhhcchhhhhccccCCC
Confidence 89999999999999876555443
No 7
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-10 Score=70.59 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=17.0
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+|||||||+|||+.++...
T Consensus 57 V~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 57 IDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp HHHHHHHHHHHHHTSCSCCC
T ss_pred ccHhhHhHHHHHHHHhHhhh
Confidence 89999999999999766543
No 8
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.96 E-value=1.2e-10 Score=67.65 Aligned_cols=18 Identities=39% Similarity=0.913 Sum_probs=16.0
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+||||||||||||..+.
T Consensus 46 V~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 46 TQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred hhHHhHHHHHHHhhhccC
Confidence 899999999999997743
No 9
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.95 E-value=1.3e-10 Score=67.72 Aligned_cols=18 Identities=39% Similarity=0.913 Sum_probs=16.1
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+||||||||||||..+.
T Consensus 47 V~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 47 TQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 899999999999998753
No 10
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.92 E-value=3.9e-11 Score=71.05 Aligned_cols=19 Identities=58% Similarity=1.185 Sum_probs=16.7
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+||||||||||||..+..
T Consensus 51 V~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 51 IQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhh
Confidence 8999999999999986644
No 11
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=1.3e-10 Score=68.23 Aligned_cols=20 Identities=35% Similarity=0.541 Sum_probs=16.9
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+||||||||||||..+...
T Consensus 51 V~~WFqNRR~k~kk~~~~~~ 70 (75)
T 2da5_A 51 IDSWFSERRKKVNAEETKKS 70 (75)
T ss_dssp HHHHHHHHTTHHHHSSCSSC
T ss_pred hhHhhHHHHHHHHHhhhccc
Confidence 89999999999999765443
No 12
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.90 E-value=7.8e-11 Score=69.04 Aligned_cols=17 Identities=47% Similarity=0.819 Sum_probs=15.2
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|+|||||||+||||...
T Consensus 48 VqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 48 VKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp HHHHHHHHHHHSCCSSS
T ss_pred eeecchhhhhhhhhhhh
Confidence 89999999999998654
No 13
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=98.89 E-value=2.1e-10 Score=65.88 Aligned_cols=18 Identities=67% Similarity=1.245 Sum_probs=16.1
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+|||||||+||||..+.
T Consensus 47 V~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 47 VRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp HHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhHHHHHHhhc
Confidence 899999999999997664
No 14
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=98.89 E-value=1.9e-10 Score=70.07 Aligned_cols=20 Identities=45% Similarity=1.042 Sum_probs=16.8
Q ss_pred ccccCchhHHHHHhhhcCCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTKK 21 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~~ 21 (73)
|+|||||||+||||......
T Consensus 61 V~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 61 VKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHTCC-
T ss_pred cccccHhhhhhhhhhhHHHH
Confidence 89999999999999866543
No 15
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.88 E-value=4e-10 Score=68.59 Aligned_cols=19 Identities=26% Similarity=0.761 Sum_probs=16.8
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+||||..+..
T Consensus 66 V~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 66 VYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp HHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 8999999999999987653
No 16
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=98.87 E-value=2.4e-10 Score=65.80 Aligned_cols=19 Identities=37% Similarity=0.746 Sum_probs=16.6
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+||||..+..
T Consensus 46 V~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 46 VKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred hHHHhHHHhhhhhhhhhHh
Confidence 8999999999999976643
No 17
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=3.9e-10 Score=66.58 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.5
Q ss_pred ccccCchhHHHHHhhh
Q psy9533 2 SFVWFQNRRAKWRKKE 17 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~ 17 (73)
|+|||||||+||||..
T Consensus 56 V~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 56 VRTWIGNRRRKYRLMG 71 (80)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHhHHHHHHHHhhcc
Confidence 8999999999999953
No 18
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=98.86 E-value=3.2e-10 Score=65.22 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=16.6
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+||||.....
T Consensus 46 V~~WFqNRR~k~kk~~~~~ 64 (68)
T 1zq3_P 46 VKIWFKNRRRRHKIQSDQH 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred hhHhhHHHHHHHHHHhccc
Confidence 8999999999999986644
No 19
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.85 E-value=3.2e-10 Score=65.90 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.8
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+|||||||+||||....
T Consensus 50 V~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 50 IKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp HHHHHHHHHHHTTTTTCS
T ss_pred eeeCChhHhHHHHhhCcC
Confidence 899999999999997553
No 20
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=2.8e-10 Score=66.71 Aligned_cols=19 Identities=26% Similarity=0.560 Sum_probs=16.2
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+||||..+..
T Consensus 52 V~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 52 VRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp HHHHHHHHHHHSSSCCSSS
T ss_pred hhHHhHHHhHHHHHhcccC
Confidence 8999999999999965543
No 21
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=98.75 E-value=1.6e-10 Score=68.98 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.3
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+||||.....
T Consensus 48 V~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 48 VSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp HHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHhhhccccc
Confidence 8999999999999976543
No 22
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.74 E-value=8.2e-10 Score=66.11 Aligned_cols=17 Identities=18% Similarity=0.458 Sum_probs=15.0
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|+||||||||||||..-
T Consensus 47 IkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 47 IIQWFGDTRYALKHGQL 63 (76)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred hhHHhHhhHHHHHHHHH
Confidence 89999999999999643
No 23
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=98.74 E-value=8.6e-10 Score=63.07 Aligned_cols=17 Identities=47% Similarity=0.925 Sum_probs=15.2
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|+|||||||+||||..+
T Consensus 45 V~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 45 IQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp HHHHHHHHHHHHHCSCC
T ss_pred hhHhhHhHHHHHhHhch
Confidence 89999999999998654
No 24
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=98.72 E-value=9.3e-10 Score=67.17 Aligned_cols=15 Identities=27% Similarity=0.849 Sum_probs=14.2
Q ss_pred ccccCchhHHHHHhh
Q psy9533 2 SFVWFQNRRAKWRKK 16 (73)
Q Consensus 2 VKIWFQNRRaKwKKq 16 (73)
|+|||||||+||||.
T Consensus 69 V~vWFqNRR~k~kk~ 83 (96)
T 3nar_A 69 IVSWFGDTRYAWKNG 83 (96)
T ss_dssp HHHHHHHHHHHHTTT
T ss_pred eeecchhhhhHhhhh
Confidence 899999999999985
No 25
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=98.67 E-value=2.3e-09 Score=62.14 Aligned_cols=18 Identities=28% Similarity=0.632 Sum_probs=15.5
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+|||||||+||||....
T Consensus 48 V~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 48 VSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp HHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHhhccccccc
Confidence 899999999999986543
No 26
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=98.63 E-value=6.9e-09 Score=61.94 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=15.5
Q ss_pred ccccCchhHHHHHhhhcC
Q psy9533 2 SFVWFQNRRAKWRKKEHT 19 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~ 19 (73)
|+|||||||+|+++....
T Consensus 54 V~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 54 ISNWFINARRRILPDMLQ 71 (83)
T ss_dssp HHHHHHHHHHHTHHHHTC
T ss_pred hhHHhhhhHhhhcHHHHH
Confidence 899999999999986543
No 27
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=98.60 E-value=3.6e-09 Score=63.02 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=14.4
Q ss_pred ccccCchhHHHHHhhh
Q psy9533 2 SFVWFQNRRAKWRKKE 17 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~ 17 (73)
|+|||||||+|||+..
T Consensus 49 V~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 49 IKNWVAARRAKEKTIT 64 (83)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred cccccHHHHccccccc
Confidence 8999999999999853
No 28
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=5.4e-09 Score=65.64 Aligned_cols=19 Identities=26% Similarity=0.562 Sum_probs=16.1
Q ss_pred ccccCchhHHHHHhhhcCC
Q psy9533 2 SFVWFQNRRAKWRKKEHTK 20 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~~~ 20 (73)
|+|||||||+|||+..+..
T Consensus 71 V~~WFqNRR~k~kr~~~~~ 89 (102)
T 2da6_A 71 VYNWFANRRKEEAFRQKLA 89 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeeecchHHHHHHhhHhh
Confidence 7999999999999875543
No 29
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.46 E-value=1.5e-08 Score=58.42 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.4
Q ss_pred ccccCchhHHHHHhhh
Q psy9533 2 SFVWFQNRRAKWRKKE 17 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~ 17 (73)
|+|||||||+|+||..
T Consensus 45 V~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 45 VNNWFINARRRIVQPM 60 (67)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred hhhhhHHHHHHHhHHH
Confidence 8999999999999853
No 30
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=98.36 E-value=1.9e-08 Score=62.39 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=13.8
Q ss_pred ccccCchhHHHHHhhh
Q psy9533 2 SFVWFQNRRAKWRKKE 17 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~ 17 (73)
|+|||||||||+++..
T Consensus 74 V~vWFqNRR~k~k~k~ 89 (99)
T 1lfb_A 74 VYNWFANRRKEEAFRH 89 (99)
T ss_dssp HHHHHHHHHHTTSCCC
T ss_pred eeeccHHHHHHHHHhc
Confidence 8999999999997643
No 31
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=98.33 E-value=2.3e-08 Score=65.59 Aligned_cols=17 Identities=24% Similarity=0.112 Sum_probs=14.0
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|+|||||||||+||...
T Consensus 141 V~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 141 VSNFFMNARRRSLDKWL 157 (164)
T ss_dssp HHHHHHHHHHTSSCC--
T ss_pred hhhcChhhhccccccCC
Confidence 89999999999998543
No 32
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.11 E-value=4.9e-07 Score=55.44 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.8
Q ss_pred ccccCchhHHHHHhhhc
Q psy9533 2 SFVWFQNRRAKWRKKEH 18 (73)
Q Consensus 2 VKIWFQNRRaKwKKq~~ 18 (73)
|++||||||+|+++...
T Consensus 52 V~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 52 VCNWFINARRRLLPDML 68 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 79999999999998643
No 33
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.84 E-value=1.6e-06 Score=51.45 Aligned_cols=11 Identities=27% Similarity=0.691 Sum_probs=9.9
Q ss_pred ccccCchhHHH
Q psy9533 2 SFVWFQNRRAK 12 (73)
Q Consensus 2 VKIWFQNRRaK 12 (73)
|+|||||||+.
T Consensus 49 VrVWFqNrRa~ 59 (71)
T 2da7_A 49 VKEWFEQRKVY 59 (71)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHhhcccc
Confidence 89999999973
No 34
>2jpf_A Hypothetical protein; all alpha helical protein, type III secretion effector protein, structural genomics; NMR {Bordetella parapertussis}
Probab=42.49 E-value=2.8 Score=26.12 Aligned_cols=7 Identities=57% Similarity=1.018 Sum_probs=6.3
Q ss_pred ccccCch
Q psy9533 2 SFVWFQN 8 (73)
Q Consensus 2 VKIWFQN 8 (73)
||||.||
T Consensus 54 vkvwmqn 60 (127)
T 2jpf_A 54 VKVWMQN 60 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7999998
No 35
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=30.01 E-value=10 Score=20.79 Aligned_cols=7 Identities=57% Similarity=0.752 Sum_probs=5.3
Q ss_pred cCchhHH
Q psy9533 5 WFQNRRA 11 (73)
Q Consensus 5 WFQNRRa 11 (73)
=+||||+
T Consensus 23 vlQNRra 29 (53)
T 1y4m_A 23 VLQNRRG 29 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3689986
No 36
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=28.78 E-value=11 Score=20.79 Aligned_cols=6 Identities=67% Similarity=1.021 Sum_probs=4.9
Q ss_pred CchhHH
Q psy9533 6 FQNRRA 11 (73)
Q Consensus 6 FQNRRa 11 (73)
+||||+
T Consensus 26 lQNRra 31 (55)
T 1mof_A 26 LQNRRG 31 (55)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 689986
No 37
>2jqo_A Hypothetical protein YOBA; OB-fold, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis}
Probab=22.70 E-value=15 Score=22.82 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=5.4
Q ss_pred CccccCc
Q psy9533 1 MSFVWFQ 7 (73)
Q Consensus 1 ~VKIWFQ 7 (73)
.|||||-
T Consensus 76 KIKVW~s 82 (108)
T 2jqo_A 76 KIKVWFH 82 (108)
T ss_dssp EEEEEEE
T ss_pred EEEEEeh
Confidence 3899985
No 38
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=22.47 E-value=35 Score=16.05 Aligned_cols=11 Identities=45% Similarity=1.250 Sum_probs=8.2
Q ss_pred chhHHHHHhhh
Q psy9533 7 QNRRAKWRKKE 17 (73)
Q Consensus 7 QNRRaKwKKq~ 17 (73)
-|||-.|+...
T Consensus 7 RnRRRRWR~Rq 17 (26)
T 1etf_B 7 RNRRRRWRERQ 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 38999998643
Done!