RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9533
         (73 letters)



>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 77

 Score = 33.5 bits (76), Expect = 3e-04
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 4  VWFQNRRAKWRKKEHTKKGPGRP 26
          +WFQN R K ++ ++ K   G P
Sbjct: 55 IWFQNHRYKTKRAQNEKGYEGHP 77


>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 56

 Score = 31.3 bits (71), Expect = 0.001
 Identities = 9/13 (69%), Positives = 12/13 (92%)

Query: 4  VWFQNRRAKWRKK 16
          +WFQNRR KW+K+
Sbjct: 43 IWFQNRRMKWKKE 55


>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 57

 Score = 30.3 bits (68), Expect = 0.003
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 4  VWFQNRRAKWRKK 16
          VWFQNRR K +++
Sbjct: 45 VWFQNRRMKDKRQ 57


>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 77

 Score = 30.6 bits (69), Expect = 0.004
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 4  VWFQNRRAKWRKKEHTK 20
          +WFQNRR K +K    +
Sbjct: 59 IWFQNRRMKMKKINKDR 75


>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 68

 Score = 30.1 bits (68), Expect = 0.004
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 4  VWFQNRRAKWRKKEHTK 20
          VWF NRRAKWR++E  +
Sbjct: 47 VWFSNRRAKWRREEKLR 63


>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 72

 Score = 30.3 bits (68), Expect = 0.004
 Identities = 7/22 (31%), Positives = 10/22 (45%)

Query: 3  FVWFQNRRAKWRKKEHTKKGPG 24
            WF+ R A+WR+ E       
Sbjct: 47 QKWFKQRLAEWRRSEGLPSECR 68


>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
          LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 52

 Score = 29.7 bits (67), Expect = 0.005
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 4  VWFQNRRAKWRK 15
           WF+ RR + + 
Sbjct: 40 RWFRQRRNQEKP 51


>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 60

 Score = 29.9 bits (67), Expect = 0.005
 Identities = 12/14 (85%), Positives = 14/14 (100%)

Query: 4  VWFQNRRAKWRKKE 17
          VWF+NRRAKWRK+E
Sbjct: 47 VWFKNRRAKWRKRE 60


>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 30.4 bits (68), Expect = 0.006
 Identities = 9/14 (64%), Positives = 12/14 (85%)

Query: 4  VWFQNRRAKWRKKE 17
          +WFQNRR K +K+E
Sbjct: 73 IWFQNRRMKQKKRE 86


>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 58

 Score = 29.5 bits (66), Expect = 0.007
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 4  VWFQNRRAKWRK 15
          +WFQNRR K +K
Sbjct: 47 IWFQNRRVKEKK 58


>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 58

 Score = 29.5 bits (66), Expect = 0.007
 Identities = 8/12 (66%), Positives = 11/12 (91%)

Query: 4  VWFQNRRAKWRK 15
          +WFQNRRAK ++
Sbjct: 46 IWFQNRRAKAKR 57


>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
          (Rattus norvegicus) [TaxId: 10116]}
          Length = 66

 Score = 29.4 bits (66), Expect = 0.007
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 4  VWFQNRRAKWRKKE 17
          VWFQN+R K +K+ 
Sbjct: 49 VWFQNKRCKDKKRS 62


>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
          (Drosophila melanogaster) [TaxId: 7227]}
          Length = 67

 Score = 29.5 bits (66), Expect = 0.007
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 4  VWFQNRRAKWRKKEHTKK 21
          +WF+NRR + + +    K
Sbjct: 47 IWFKNRRRRHKIQSDQHK 64


>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 29.0 bits (65), Expect = 0.011
 Identities = 10/12 (83%), Positives = 11/12 (91%)

Query: 4  VWFQNRRAKWRK 15
           WFQNRRAKWR+
Sbjct: 46 TWFQNRRAKWRR 57


>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 68

 Score = 28.7 bits (64), Expect = 0.014
 Identities = 7/17 (41%), Positives = 11/17 (64%)

Query: 4  VWFQNRRAKWRKKEHTK 20
          +WFQN R K +++   K
Sbjct: 48 IWFQNHRYKMKRQAKDK 64


>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
          (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 29.3 bits (65), Expect = 0.015
 Identities = 5/14 (35%), Positives = 9/14 (64%)

Query: 4  VWFQNRRAKWRKKE 17
           WF NRR + +++ 
Sbjct: 61 NWFANRRKEIKRRA 74


>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 65

 Score = 27.6 bits (61), Expect = 0.040
 Identities = 10/14 (71%), Positives = 12/14 (85%)

Query: 4  VWFQNRRAKWRKKE 17
          VWFQNRRA+ RK+ 
Sbjct: 48 VWFQNRRARLRKQH 61


>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 26.9 bits (59), Expect = 0.089
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 4  VWFQNRRAKWRKKEH 18
           WF N+R +++K   
Sbjct: 50 NWFGNKRIRYKKNIG 64


>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
          yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 53

 Score = 26.0 bits (57), Expect = 0.13
 Identities = 5/11 (45%), Positives = 8/11 (72%)

Query: 4  VWFQNRRAKWR 14
          VWF N+R + +
Sbjct: 43 VWFINKRMRSK 53


>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
          melanogaster [TaxId: 7227]}
          Length = 53

 Score = 26.0 bits (57), Expect = 0.13
 Identities = 7/9 (77%), Positives = 8/9 (88%)

Query: 4  VWFQNRRAK 12
          +WFQN RAK
Sbjct: 45 IWFQNARAK 53


>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
          {Rat (Rattus rattus) [TaxId: 10117]}
          Length = 78

 Score = 26.3 bits (57), Expect = 0.15
 Identities = 5/14 (35%), Positives = 7/14 (50%)

Query: 4  VWFQNRRAKWRKKE 17
           WF NRR +   + 
Sbjct: 64 NWFANRRKEEAFRH 77


>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 60

 Score = 25.9 bits (57), Expect = 0.19
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 4  VWFQNRRAKWRK 15
           W  NRR K + 
Sbjct: 47 NWVSNRRRKEKT 58


>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 58

 Score = 25.6 bits (56), Expect = 0.21
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 4  VWFQNRRAKWRKKE 17
          VWF NRR + ++ +
Sbjct: 45 VWFCNRRQREKRVK 58


>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
          LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 59

 Score = 25.1 bits (55), Expect = 0.29
 Identities = 4/11 (36%), Positives = 8/11 (72%)

Query: 4  VWFQNRRAKWR 14
           WF++RR + +
Sbjct: 48 CWFRHRRNQDK 58


>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 67

 Score = 25.4 bits (55), Expect = 0.33
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 4  VWFQNRRAKWRKK 16
          VWF NRR K ++ 
Sbjct: 54 VWFCNRRQKGKRS 66


>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 80

 Score = 25.0 bits (54), Expect = 0.47
 Identities = 2/12 (16%), Positives = 4/12 (33%)

Query: 4  VWFQNRRAKWRK 15
          +W  N +     
Sbjct: 67 IWMHNNKNSGPS 78


>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
          ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 76

 Score = 25.1 bits (54), Expect = 0.56
 Identities = 4/18 (22%), Positives = 7/18 (38%)

Query: 4  VWFQNRRAKWRKKEHTKK 21
           WF  ++     KE   +
Sbjct: 50 AWFTEKKKSKALKEEKME 67


>d2gp4a1 c.8.2.2 (A:419-608) 6-phosphogluconate dehydratase EDD
           {Shewanella oneidensis [TaxId: 70863]}
          Length = 190

 Score = 25.3 bits (55), Expect = 0.75
 Identities = 6/20 (30%), Positives = 8/20 (40%)

Query: 6   FQNRRAKWRKKEHTKKGPGR 25
              R A      H++ G GR
Sbjct: 144 LATRTATEIDLRHSRYGMGR 163


>d16vpa_ d.180.1.1 (A:) Conserved core of transcriptional regulatory
           protein vp16 {Herpes simplex virus type 1 [TaxId:
           10298]}
          Length = 356

 Score = 25.2 bits (55), Expect = 0.79
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 29  NAHPVTCSGDPIPAEELKRKERARRQKKL--MKS--LERQVGPLTTP 71
               +T  G PI A  L+     R    L  ++S   E    PLTTP
Sbjct: 230 VNGALTVRGVPIEARRLRELNHIREHLNLPLVRSAATEEPGAPLTTP 276


>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 71

 Score = 24.3 bits (52), Expect = 0.98
 Identities = 4/12 (33%), Positives = 7/12 (58%)

Query: 4  VWFQNRRAKWRK 15
           +FQN+R   + 
Sbjct: 54 KFFQNQRYHVKH 65


>d1e0fi_ g.3.15.2 (I:) Haemadin {Indian leech (Haemadipsa
          sylvestris) [TaxId: 13555]}
          Length = 57

 Score = 23.5 bits (50), Expect = 1.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 35 CSGDPIPAEELKRKERARRQK 55
          CSGDP P+ E +  E    +K
Sbjct: 37 CSGDPKPSSEFEEFEIDEEEK 57


>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 57

 Score = 23.0 bits (49), Expect = 2.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 4  VWFQNRRAKWRK 15
          VWF NRR K ++
Sbjct: 44 VWFSNRRQKEKR 55


>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 62

 Score = 22.8 bits (49), Expect = 2.4
 Identities = 4/12 (33%), Positives = 6/12 (50%)

Query: 4  VWFQNRRAKWRK 15
           WF N R +  +
Sbjct: 51 NWFINARRRILQ 62


>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 50

 Score = 22.1 bits (47), Expect = 4.4
 Identities = 3/7 (42%), Positives = 4/7 (57%)

Query: 4  VWFQNRR 10
           +F N R
Sbjct: 44 NFFMNAR 50


>d1rw5a1 a.26.1.1 (A:1-199) Prolactin (placental lactogen) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 199

 Score = 22.5 bits (48), Expect = 6.0
 Identities = 7/38 (18%), Positives = 12/38 (31%)

Query: 23 PGRPAHNAHPVTCSGDPIPAEELKRKERARRQKKLMKS 60
           GR        +C    +   E K + +   QK  +  
Sbjct: 46 HGRGFITKAINSCHTSSLATPEDKEQAQQMNQKDFLSL 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.416 

Gapped
Lambda     K      H
   0.267   0.0654    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,239
Number of extensions: 10936
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 40
Length of query: 73
Length of database: 2,407,596
Length adjustment: 41
Effective length of query: 32
Effective length of database: 1,844,666
Effective search space: 59029312
Effective search space used: 59029312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)