BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9536
(287 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS++L Q A+++SK+
Sbjct: 47 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSISLDILRSQWSPALKISKV 101
Query: 219 L 219
L
Sbjct: 102 L 102
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS++L Q A+ +SK+
Sbjct: 48 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPAINSNGSISLDILRSQWSPALTISKV 102
Query: 219 L 219
L
Sbjct: 103 L 103
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS++L Q A+ +SK+
Sbjct: 48 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSISLDILRSQWSPALTISKV 102
Query: 219 L 219
L
Sbjct: 103 L 103
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS++L Q A+ +SK+
Sbjct: 51 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSISLDILRSQWSPALTISKV 105
Query: 219 L 219
L
Sbjct: 106 L 106
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 58 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 112
Query: 219 L 219
L
Sbjct: 113 L 113
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 47 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 101
Query: 219 L 219
L
Sbjct: 102 L 102
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 30.8 bits (68), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 48 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 102
Query: 219 L 219
L
Sbjct: 103 L 103
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 58 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 112
Query: 219 L 219
L
Sbjct: 113 L 113
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 56 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 110
Query: 219 L 219
L
Sbjct: 111 L 111
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS++L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSISLDILRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 66 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 120
Query: 219 L 219
L
Sbjct: 121 L 121
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 30.8 bits (68), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDALRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 66 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSIXLDILRSQWSPALTISKV 120
Query: 219 L 219
L
Sbjct: 121 L 121
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 53 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 107
Query: 219 L 219
L
Sbjct: 108 L 108
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 51 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWSPALTISKV 105
Query: 219 L 219
L
Sbjct: 106 L 106
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTIHFPTD--YPFKPPKVAF---TTRIYHPNINSNGSICLDILRSQWGPALTISKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T RIYHP + GS+ L Q A+ +SK+
Sbjct: 48 GVFFLSIHFPTD--YPFKPPKVNF---TTRIYHPNINSNGSICLDILRDQWSPALTISKV 102
Query: 219 L 219
L
Sbjct: 103 L 103
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P KI T +IYHP + GS+ L Q A+ +SK+
Sbjct: 66 GVFFLTVHFPTD--YPFKPPKIAF---TTKIYHPNINSNGSICLDILRSQWSPALTVSKV 120
Query: 219 L 219
L
Sbjct: 121 L 121
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P KI T +IYHP + GS+ L Q A+ +SK+
Sbjct: 50 GVFFLTVHFPTD--YPFKPPKIAF---TTKIYHPNINSNGSICLDILRSQWSPALTVSKV 104
Query: 219 L 219
L
Sbjct: 105 L 105
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P KI T +IYHP + GS+ L Q A+ +SK+
Sbjct: 54 GVFFLTVHFPTD--YPFKPPKIAF---TTKIYHPNINSNGSICLDILRSQWSPALTVSKV 108
Query: 219 L 219
L
Sbjct: 109 L 109
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF + H + +PF P K+ T +IYHP + G++ L Q A+ +SK+
Sbjct: 68 GVFFLNIHFPSD--YPFKPPKVNF---TTKIYHPNINSQGAICLDILKDQWSPALTISKV 122
Query: 219 L 219
L
Sbjct: 123 L 123
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P KI T +IYHP + GS+ L Q A+ +SK+
Sbjct: 54 GVFFLTVHFPTD--YPFKPPKIAF---TTKIYHPNINSNGSIKLDILRSQWSPALTVSKV 108
Query: 219 L 219
L
Sbjct: 109 L 109
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P K+ T +IYHP + GS+ L Q A+ +SK+
Sbjct: 53 GVFFLTIHFPTD--YPFKPPKVAF---TTKIYHPNINSNGSICLDILRSQWSPALTVSKV 107
Query: 219 L 219
L
Sbjct: 108 L 108
>pdb|1QME|A Chain A, Penicillin-binding Protein 2x (pbp-2x)
pdb|1QMF|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x) Acyl-Enzyme Complex
Length = 702
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 19 SYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEP 78
SYV+ Q +PN ++ + NG+ + N S KE + VKGI + + P
Sbjct: 87 SYVREQLSQPNLKQVSFGAKGNGITY------ANMMSIKKELEAAEVKGIDF----TTSP 136
Query: 79 NR 80
NR
Sbjct: 137 NR 138
>pdb|1PYY|A Chain A, Double Mutant Pbp2x T338aM339F FROM STREPTOCOCCUS
PNEUMONIAE STRAIN R6 At 2.4 A Resolution
Length = 702
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 19 SYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEP 78
SYV+ Q +PN ++ + NG+ + N S KE + VKGI + + P
Sbjct: 87 SYVREQLSQPNLKQVSFGAKGNGITY------ANMMSIKKELEAAEVKGIDF----TTSP 136
Query: 79 NR 80
NR
Sbjct: 137 NR 138
>pdb|1PMD|A Chain A, Penicillin-Binding Protein 2x (Pbp-2x)
Length = 675
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 19 SYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEP 78
SYV+ Q +PN ++ + NG+ + N S KE + VKGI + + P
Sbjct: 60 SYVREQLSQPNLKQVSFGAKGNGITY------ANMMSIKKELEAAEVKGIDF----TTSP 109
Query: 79 NR 80
NR
Sbjct: 110 NR 111
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)
Query: 163 GEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL----IQSKTAIELSKL 218
G FF H + +PF P KI T +IYHP + G++ L Q A+ LSK+
Sbjct: 49 GVFFLSIHFPTD--YPFKPPKISF---TTKIYHPNINANGNICLDILKDQWSPALTLSKV 103
Query: 219 L 219
L
Sbjct: 104 L 104
>pdb|1RP5|A Chain A, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
pdb|1RP5|B Chain B, Pbp2x From Streptococcus Pneumoniae Strain 5259 With
Reduced Susceptibility To Beta-Lactam Antibiotics
Length = 702
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 19 SYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEP 78
SYV+ Q +PN ++ + NG+ + N S KE + VKGI + + P
Sbjct: 87 SYVREQLSQPNLKQVSFGAKGNGITY------ANMMSIKKELETAEVKGIDF----TTSP 136
Query: 79 NR 80
NR
Sbjct: 137 NR 138
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 128 YEDEFPFISPCGRERNFIR-----CDDTPVVYTHVITT 160
++D F F+ PC +R F+ DD PVV + TT
Sbjct: 220 FDDRFVFVGPCFDDRRFLGEWTRPADDLPVVLVSLGTT 257
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 128 YEDEFPFISPCGRERNFIR-----CDDTPVVYTHVITT 160
++D F F+ PC +R F+ DD PVV + TT
Sbjct: 220 FDDRFVFVGPCFDDRRFLGEWTRPADDLPVVLVSLGTT 257
>pdb|2Z2L|A Chain A, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2L|D Chain D, Penicillin-Binding Protein 2x (Pbp2x) From Streptococcus
Pneumoniae
pdb|2Z2M|A Chain A, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2Z2M|D Chain D, Cefditoren-Acylated Penicillin-Binding Protein 2x (Pbp2x)
From Streptococcus Pneumoniae
pdb|2ZC3|A Chain A, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC3|D Chain D, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Biapenem) From Streptococcus Pneumoniae
pdb|2ZC4|A Chain A, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
pdb|2ZC4|D Chain D, Penicillin-Binding Protein 2x (Pbp 2x) Acyl-Enzyme Complex
(Tebipenem) From Streptococcus Pneumoniae
Length = 168
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)
Query: 19 SYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEP 78
SYV+ Q +PN ++ + NG+ + N S KE + VKGI + + P
Sbjct: 65 SYVREQLSQPNLKQVSFGAKGNGITY------ANMMSIKKELEAAEVKGIDF----TTSP 114
Query: 79 NR 80
NR
Sbjct: 115 NR 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,226,826
Number of Sequences: 62578
Number of extensions: 359533
Number of successful extensions: 892
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 886
Number of HSP's gapped (non-prelim): 41
length of query: 287
length of database: 14,973,337
effective HSP length: 98
effective length of query: 189
effective length of database: 8,840,693
effective search space: 1670890977
effective search space used: 1670890977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)