BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy9536
(287 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6P1X6|CH082_HUMAN UPF0598 protein C8orf82 OS=Homo sapiens GN=C8orf82 PE=1 SV=2
Length = 216
Score = 203 bits (517), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 89/179 (49%), Positives = 121/179 (67%), Gaps = 1/179 (0%)
Query: 67 GISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETG 126
G+SY QGQSPEP REYFYY+DH G LFLDD++MKNF +CFK+ +FLV FF RLR N +G
Sbjct: 27 GVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDPQFLVTFFSRLRPNRSG 86
Query: 127 LYEDEFPFISPCGRERNFIRCDDTPVVYTHVITTPEGEF-FCHNHAGDELRHPFDPSKIY 185
YE FPF+SPCGRERNF+RC+D PVV+TH++T G + G+ L PF+P+++
Sbjct: 87 RYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGPPRLSYCGGGEALAVPFEPARLL 146
Query: 186 MSLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELDLE 244
GR+YHP + G V L++S A ELS ++ G + P+H+ W R + L ++
Sbjct: 147 PLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGAPALPSHVRWQGRRLALTMD 205
>sp|A8E4L3|CH082_BOVIN UPF0598 protein C8orf82 homolog OS=Bos taurus PE=2 SV=1
Length = 218
Score = 201 bits (512), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 89/187 (47%), Positives = 121/187 (64%), Gaps = 1/187 (0%)
Query: 59 EKKFLNVKGISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQ 118
+ + G+SY QGQSPEP REYFYY+DH G LFLDD+RMKNFT+CFK+ +FLV FF
Sbjct: 21 ARTYAGGGGVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSRMKNFTTCFKDPQFLVMFFS 80
Query: 119 RLRRNETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITT-PEGEFFCHNHAGDELRH 177
RLR N +G YE FPF+S CGRERNF+RC+D PVV+TH++ P + + G+ L
Sbjct: 81 RLRPNRSGRYEAYFPFLSLCGRERNFLRCEDRPVVFTHLLAAGPAPQRLSYCGGGEALAV 140
Query: 178 PFDPSKIYMSLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGER 237
PF+P+++ GR+YHP + G V L++S A ELS ++ G P+H+ W R
Sbjct: 141 PFEPARLLPLATNGRLYHPAPERAGGVGLVRSALAFELSACFEYAPGAPELPSHVRWQGR 200
Query: 238 EVELDLE 244
L ++
Sbjct: 201 RFALTMD 207
>sp|Q8VE95|CH082_MOUSE UPF0598 protein C8orf82 homolog OS=Mus musculus PE=2 SV=1
Length = 218
Score = 194 bits (492), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 86/182 (47%), Positives = 120/182 (65%), Gaps = 1/182 (0%)
Query: 64 NVKGISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRN 123
V+ +SY QGQSPEP REYFYY+DH G LFLDD++MKNF +CFK+ +FLV FF RLR N
Sbjct: 26 GVERVSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDLQFLVTFFSRLRPN 85
Query: 124 ETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITT-PEGEFFCHNHAGDELRHPFDPS 182
+G YE FPF+S CGRERNF+RC+D PVV+TH++ + E + G+ L PF+P+
Sbjct: 86 HSGRYEASFPFLSLCGRERNFLRCEDRPVVFTHLLASDSESPRLSYCGGGEALAIPFEPA 145
Query: 183 KIYMSLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELD 242
++ GR+YHP + G V L++S A ELS ++ + P+H+ W R + L
Sbjct: 146 RLLPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPSSPTVPSHVHWQGRRIALT 205
Query: 243 LE 244
++
Sbjct: 206 MD 207
>sp|Q642A4|CH082_RAT UPF0598 protein C8orf82 homolog OS=Rattus norvegicus PE=2 SV=1
Length = 218
Score = 193 bits (490), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/178 (47%), Positives = 118/178 (66%), Gaps = 1/178 (0%)
Query: 68 ISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGL 127
+SY QGQSPEP REYFYY+DH G LFLDD++MKNF +CFK+ +FLV FF RLR N +G
Sbjct: 30 VSYTQGQSPEPRTREYFYYVDHQGQLFLDDSKMKNFITCFKDLQFLVTFFSRLRPNHSGR 89
Query: 128 YEDEFPFISPCGRERNFIRCDDTPVVYTHVITT-PEGEFFCHNHAGDELRHPFDPSKIYM 186
YE FPF+S CGRERNF+RC+D PVV+TH++ + E + G+ L PF+P+++
Sbjct: 90 YEASFPFLSLCGRERNFLRCEDRPVVFTHLLASDSESPRLSYCGGGEALAIPFEPARLLP 149
Query: 187 SLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELDLE 244
GR+YHP + G V L++S A ELS ++ + P+H+ W R + L ++
Sbjct: 150 LAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPNSPTVPSHVQWQGRRIALTMD 207
>sp|Q8MKL1|U598_DROME UPF0598 protein CG30010 OS=Drosophila melanogaster GN=CG30010 PE=2
SV=1
Length = 167
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 89/155 (57%), Positives = 107/155 (69%), Gaps = 1/155 (0%)
Query: 92 MLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRCDDTP 151
MLFLDDA+MKNFTSCFKEK FL FFF RLR N+T YE EFP+IS CGRERNFIRCDDTP
Sbjct: 1 MLFLDDAKMKNFTSCFKEKDFLKFFFNRLRLNKTSRYESEFPYISLCGRERNFIRCDDTP 60
Query: 152 VVYTHVITTPEGEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVALIQSKT 211
VV+T + + E + HAG L P++P K+YM GR+YHP Q G + L++SK
Sbjct: 61 VVFTEQLRKDDTEVLSYAHAGQVLTLPYEPHKLYMDPRNGRVYHPAAPQVGGIGLVRSKL 120
Query: 212 AIELSKLLQFRNGETSAPTHIVWGEREVELDLEWI 246
AIELS+ +F GE S PTH W +EL EW+
Sbjct: 121 AIELSQHFEFLAGEAS-PTHFQWNGERLELQNEWV 154
>sp|Q564X7|U598_CAEEL UPF0598 protein F59C6.12 OS=Caenorhabditis elegans GN=F59C6.12 PE=3
SV=1
Length = 173
Score = 138 bits (348), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 77/172 (44%), Positives = 107/172 (62%), Gaps = 10/172 (5%)
Query: 70 YVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYE 129
Y QGQ REYFYY+ HNG LFLDD+RMKNFT+ +K+ +FL FF+++++ N+TG YE
Sbjct: 10 YTQGQY-NGKIREYFYYVSHNGFLFLDDSRMKNFTAAYKDIQFLNFFYRKIKENKTGRYE 68
Query: 130 DEFPFISPCGRERNFIRCDDTPVVYTHVITTPEGEFFCHNHAGDELRHPFDPSKIYMSLD 189
D FP++S CG ERNF+RCDDTP+VYT + +T E E + H F PS + M+
Sbjct: 69 DTFPWVSLCGIERNFLRCDDTPLVYTELDST-EKEL---RIGQSTIYHSFQPSSLSMN-S 123
Query: 190 TGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVEL 241
+GR+YH G AL+ K +L + +FR + P GE+ +EL
Sbjct: 124 SGRVYHKCP--IGGKALVADKLTDKLYR--RFRFDDDGVPVGFQCGEQIIEL 171
>sp|P0CN08|DNLI4_CRYNJ DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 191 GRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELDLEWIRREE 250
GR Y+ T QY V+ ++ +T L +G+ I+ GE + E+D+ EE
Sbjct: 785 GRYYNKTLEQYDKVSFVRDRTGGALVD----EDGDADVEDEIMDGEDKDEIDV-----EE 835
Query: 251 DEEKTETRKKDEDVLGKEKENKKKKKKKKKKEKKNRR 287
E R ED+ KEKE+ + ++KK +E R
Sbjct: 836 SRESKNRRMAREDL--KEKESNRTLEQKKLQEAWGLR 870
>sp|P0CN09|DNLI4_CRYNB DNA ligase 4 OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=LIG4 PE=3 SV=1
Length = 1065
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 191 GRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELDLEWIRREE 250
GR Y+ T QY V+ ++ +T L +G+ I+ GE + E+D+ EE
Sbjct: 785 GRYYNKTLEQYDKVSFVRDRTGGALVD----EDGDADVEDEIMDGEDKDEIDV-----EE 835
Query: 251 DEEKTETRKKDEDVLGKEKENKKKKKKKKKKEKKNRR 287
E R ED+ KEKE+ + ++KK +E R
Sbjct: 836 SRESKNRRMAREDL--KEKESNRTLEQKKLQEAWGLR 870
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,194,579
Number of Sequences: 539616
Number of extensions: 5634984
Number of successful extensions: 68946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 304
Number of HSP's that attempted gapping in prelim test: 49403
Number of HSP's gapped (non-prelim): 13362
length of query: 287
length of database: 191,569,459
effective HSP length: 116
effective length of query: 171
effective length of database: 128,974,003
effective search space: 22054554513
effective search space used: 22054554513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)