Query psy9536
Match_columns 287
No_of_seqs 115 out of 125
Neff 3.3
Searched_HMMs 46136
Date Fri Aug 16 22:06:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9536.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9536hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14956 DUF4505: Domain of un 100.0 8E-88 1.7E-92 591.3 12.7 181 68-248 2-183 (183)
2 PF14956 DUF4505: Domain of un 100.0 5.2E-39 1.1E-43 282.9 5.1 107 17-141 1-107 (183)
3 PF06938 DUF1285: Protein of u 92.1 1.1 2.3E-05 39.2 8.6 132 86-235 2-142 (148)
4 PF11161 DUF2944: Protein of u 90.7 0.37 8.1E-06 43.9 4.5 111 110-236 50-161 (187)
5 KOG2422|consensus 68.7 1.8 3.8E-05 45.8 0.3 20 250-269 60-79 (665)
6 KOG2812|consensus 58.3 5 0.00011 40.4 1.2 36 249-284 226-261 (426)
7 PF06375 BLVR: Bovine leukaemi 55.6 3.9 8.4E-05 36.2 0.0 16 181-196 21-36 (154)
8 KOG3794|consensus 37.6 18 0.00039 36.9 1.5 23 131-153 92-114 (453)
9 KOG0422|consensus 29.0 99 0.0021 27.8 4.5 59 142-206 23-87 (153)
10 PF15535 Toxin_57: Putative to 25.9 35 0.00076 27.3 1.1 17 183-199 33-49 (77)
11 cd08361 PpCmtC_N N-terminal do 20.9 55 0.0012 25.6 1.3 28 17-44 84-114 (124)
12 KOG0418|consensus 20.6 60 0.0013 30.2 1.6 28 176-206 64-92 (200)
13 PF07901 DUF1672: Protein of u 20.1 58 0.0013 31.6 1.5 18 142-159 67-84 (277)
No 1
>PF14956 DUF4505: Domain of unknown function (DUF4505)
Probab=100.00 E-value=8e-88 Score=591.34 Aligned_cols=181 Identities=60% Similarity=1.121 Sum_probs=175.1
Q ss_pred eecccCCCCCCCcccccceecCCCccccccccccCccccccccccceeeeeeeeccCCCCcccCCCeeccCCCccceeec
Q psy9536 68 ISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRC 147 (287)
Q Consensus 68 ~~y~qgqsp~p~~ReYFyyIdh~G~LFLDDsr~kNFtsc~KD~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~ErNFIRC 147 (287)
++|+|||+|+|++||||||||||||||||||++||||+||||++||+|||+|||+|++++|.++|||||+||+|||||||
T Consensus 2 ~~y~qgqsp~~~~ReYFYyid~~G~LFlddsk~KNftscfKd~~FL~FFF~rlr~N~t~ry~~eFPyvS~CGrErNFIRC 81 (183)
T PF14956_consen 2 VSYVQGQSPEPKIREYFYYIDHQGQLFLDDSKMKNFTSCFKDKKFLDFFFSRLRPNQTGRYEDEFPYVSPCGRERNFIRC 81 (183)
T ss_pred ceeecCCCCCCcceEEEEEECCCCcEEeccccccchhhhccchHHHHHHHHHhccCCccccccCCceEccCCCccceecc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEEeeecCC-CCceeEeecCCCcccccccCCeeeecCCCCeeeccCCCCCCceeEeehHHHHHhhcceeecCCCC
Q psy9536 148 DDTPVVYTHVITTP-EGEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGET 226 (287)
Q Consensus 148 dD~PiVFt~L~~~~-~~~~Lsy~~~g~~L~vpFqPe~L~m~p~tGRlYHPap~~~GgvGLVrS~LAiELs~~f~f~~~~~ 226 (287)
||+||||||++.++ .+..|+|||||++|+|||||++|+|+|+|||||||||+++||+|||||+||||||++|+|+++++
T Consensus 82 dD~PiVFt~ll~~~~~~~~L~y~~~g~~L~vpFqPe~L~m~~~sGRvYHPap~~~GgvgLvrS~Laiels~~f~f~~~~~ 161 (183)
T PF14956_consen 82 DDTPIVFTHLLRDDEEEKELSYAGGGDKLTVPFQPEKLCMDPSSGRVYHPAPEKVGGVGLVRSKLAIELSKHFEFDEGED 161 (183)
T ss_pred CCccEEEEEeecCCCCCceeEEecCCCeEEEecccceEEEcCCCCcEeccCCccCCceEEehhHHHHHhccceEeCCCCC
Confidence 99999999998765 44569999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEECCEEEEcchhhhhh
Q psy9536 227 SAPTHIVWGEREVELDLEWIRR 248 (287)
Q Consensus 227 ~~p~~f~W~G~~~~L~~~~~~~ 248 (287)
.+|+||.|+|++|+|+|+|++.
T Consensus 162 ~~pthf~W~g~~~~L~~~~~~~ 183 (183)
T PF14956_consen 162 APPTHFHWQGKRYELDNEWFKN 183 (183)
T ss_pred CCCeEEEECCEEEeCchhHhhC
Confidence 8999999999999999999973
No 2
>PF14956 DUF4505: Domain of unknown function (DUF4505)
Probab=100.00 E-value=5.2e-39 Score=282.93 Aligned_cols=107 Identities=49% Similarity=0.791 Sum_probs=96.6
Q ss_pred ccccccCCCCCcccceeEEEEccCCceeecccccccceeccccceeeeeeeeecccCCCCCCCcccccceecCCCccccc
Q psy9536 17 GISYVQGQSPEPNRREYFYYIDHNGMLFLDDARMKNFTSCFKEKKFLNVKGISYVQGQSPEPNRREYFYYIDHNGMLFLD 96 (287)
Q Consensus 17 ~~~y~qgq~~~~~~R~yFyyid~~G~Lflddsk~knf~t~~kd~~FL~ff~~~y~qgqsp~p~~ReYFyyIdh~G~LFLD 96 (287)
.++|||||||+|++|||||||||||||||||||||||+|||||++||+||+.|.+.|+++ ++.+.|+|||+||
T Consensus 1 ~~~y~qgqsp~~~~ReYFYyid~~G~LFlddsk~KNftscfKd~~FL~FFF~rlr~N~t~--ry~~eFPyvS~CG----- 73 (183)
T PF14956_consen 1 CVSYVQGQSPEPKIREYFYYIDHQGQLFLDDSKMKNFTSCFKDKKFLDFFFSRLRPNQTG--RYEDEFPYVSPCG----- 73 (183)
T ss_pred CceeecCCCCCCcceEEEEEECCCCcEEeccccccchhhhccchHHHHHHHHHhccCCcc--ccccCCceEccCC-----
Confidence 368999999999999999999999999999999999999999999999999999999987 6888899999999
Q ss_pred cccccCccccccccccceeeeeeeeccCCCCcccCCCeeccCCCc
Q psy9536 97 DARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRE 141 (287)
Q Consensus 97 Dsr~kNFtsc~KD~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~E 141 (287)
+|+||++| +.+|+||++|.....+... ||+||++
T Consensus 74 --rErNFIRC----dD~PiVFt~ll~~~~~~~~-----L~y~~~g 107 (183)
T PF14956_consen 74 --RERNFIRC----DDTPIVFTHLLRDDEEEKE-----LSYAGGG 107 (183)
T ss_pred --Cccceecc----CCccEEEEEeecCCCCCce-----eEEecCC
Confidence 99999999 4799999998654433332 8888764
No 3
>PF06938 DUF1285: Protein of unknown function (DUF1285); InterPro: IPR010707 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.; PDB: 2RA9_A 2RE3_B.
Probab=92.12 E-value=1.1 Score=39.20 Aligned_cols=132 Identities=23% Similarity=0.375 Sum_probs=74.7
Q ss_pred eecCCCccccccccccCccccccccccceeeeeeeeccCCCCcccCCCeeccCCCccceeecCCcceEEEeeecCC---C
Q psy9536 86 YIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITTP---E 162 (287)
Q Consensus 86 yIdh~G~LFLDDsr~kNFtsc~KD~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~ErNFIRCdD~PiVFt~L~~~~---~ 162 (287)
.|+.+|.-|.+++.+ +-+++...|.+-|+..+.|+|- ++.| .|.-.|.++|+|+|-+++...+ .
T Consensus 2 ~I~~dG~W~h~G~pI-------~R~~lv~LFasiL~~e~~G~y~----LvTP--vEk~~I~VEDaPf~iv~~~~~~~~~~ 68 (148)
T PF06938_consen 2 RIDRDGRWFHEGSPI-------PRPKLVRLFASILRREDDGEYY----LVTP--VEKVRIQVEDAPFLIVDVDVEGEGEG 68 (148)
T ss_dssp EE-TTS-EEETTEE----------HHHHHHHHTTEEEETT-EEE----EE-S--S-EEEEEESS-SEEEEEEEECS-GCC
T ss_pred EECCCCcEEECCcCc-------CcHHHHHHHHhhEEEcCCCcEE----EEcc--ceEEEEEEecCcEEEEEEEEeccCCC
Confidence 589999999999998 3345677778888887776765 4555 8999999999999999998762 2
Q ss_pred CceeEeecC-CCcccccccCC-eeeec--CC--CCeeeccCCCCCCceeEeehHHHHHhhcceeecCCCCCCCeEEEEC
Q psy9536 163 GEFFCHNHA-GDELRHPFDPS-KIYMS--LD--TGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWG 235 (287)
Q Consensus 163 ~~~Lsy~~~-g~~L~vpFqPe-~L~m~--p~--tGRlYHPap~~~GgvGLVrS~LAiELs~~f~f~~~~~~~p~~f~W~ 235 (287)
..+|.+.-. |+. +..-|+ .|.|. +. .+..|=... .|-.+++.-++--+|....+-...+ +...-+.|.
T Consensus 69 ~~~l~~~tn~gd~--~~~~~~hpl~~~~~~~~~e~~pYv~vr--~gl~Arl~R~~yY~L~e~a~~~~~~-~~~~~~v~S 142 (148)
T PF06938_consen 69 QQVLTFRTNTGDV--VRLGPDHPLRLETDPDTGEPVPYVRVR--RGLEARLSRAVYYQLVELAEEREGD-GGTGLGVWS 142 (148)
T ss_dssp T-EEEEEETTS-E--EE-SSCCEEECCC-CCT-SCEEEEEEC--TTEEEEE-HHHHHHHHCC-ECET-----TEEEEEE
T ss_pred ceEEEEEeccCcE--EEcCCCCceEEecccCCCCCceEEEEe--CChhheecHHHHHHHHHHheecccc-cccEEEEEE
Confidence 225665532 222 222332 44444 32 334443333 3567888888777888876655432 234445553
No 4
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=90.68 E-value=0.37 Score=43.89 Aligned_cols=111 Identities=20% Similarity=0.462 Sum_probs=72.6
Q ss_pred cccceeeeeeeeccCCCCcccCCCeeccCCCccceeecCCcceEEEeeecCCCCceeEeecCCCccccccc-CCeeeecC
Q psy9536 110 KKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITTPEGEFFCHNHAGDELRHPFD-PSKIYMSL 188 (287)
Q Consensus 110 ~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~ErNFIRCdD~PiVFt~L~~~~~~~~Lsy~~~g~~L~vpFq-Pe~L~m~p 188 (287)
.+.+.|+=+.-.....|+ |.--+|+.|=||+-|-+|.|.. |...+....| -.|.| .||. |+...++
T Consensus 50 ~~Li~FI~RNY~~D~~G~------WfFQNGPQRVYV~Le~tP~v~R-l~~~~~~~~l-~thTg----~~~~~~~~~~lD- 116 (187)
T PF11161_consen 50 EALIEFINRNYEHDEDGR------WFFQNGPQRVYVELEYTPWVWR-LQPEGGDLGL-VTHTG----APFEAPRACWLD- 116 (187)
T ss_pred HHHHHHHHhccCCCCCcc------EEEecCCEEEEEEeccCceEEE-eccCCCCCce-eecCC----CcccchhheeEC-
Confidence 345666633333334444 4567999999999999999985 3322222223 22334 4888 9999999
Q ss_pred CCCeeeccCCCCCCceeEeehHHHHHhhcceeecCCCCCCCeEEEECC
Q psy9536 189 DTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGE 236 (287)
Q Consensus 189 ~tGRlYHPap~~~GgvGLVrS~LAiELs~~f~f~~~~~~~p~~f~W~G 236 (287)
+.|+||=-+| .|+|||-+.=..-++..++.++++......+.|.+
T Consensus 117 e~G~l~l~t~---~g~glvhd~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 161 (187)
T PF11161_consen 117 EQGRLYLATP---LGVGLVHDRDLAAFADALELDDGAPADLGLLAWPD 161 (187)
T ss_pred CCCCEEEecC---CceEEEecCcHHHHHHHHHHhccccccchhhcccc
Confidence 8999999887 48999998654445555555554333455677744
No 5
>KOG2422|consensus
Probab=68.73 E-value=1.8 Score=45.76 Aligned_cols=20 Identities=40% Similarity=0.636 Sum_probs=13.0
Q ss_pred chhhhhhhccccccccchhh
Q psy9536 250 EDEEKTETRKKDEDVLGKEK 269 (287)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~ 269 (287)
++|+-+-..++||++.|.|+
T Consensus 60 e~e~~~~~ee~de~~~~~es 79 (665)
T KOG2422|consen 60 EDEEAAIAEERDEPSVGQES 79 (665)
T ss_pred hhHHhhhhhcccCcccCCcc
Confidence 34444555678888888764
No 6
>KOG2812|consensus
Probab=58.31 E-value=5 Score=40.41 Aligned_cols=36 Identities=53% Similarity=0.664 Sum_probs=24.2
Q ss_pred cchhhhhhhccccccccchhhhhhHHHHHHHHHhhh
Q psy9536 249 EEDEEKTETRKKDEDVLGKEKENKKKKKKKKKKEKK 284 (287)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
..+.+.+.+-.-|+|+--.++|.++|+|||+.++||
T Consensus 226 sd~~s~s~~~ss~~d~k~~~ke~k~k~kkka~~~kk 261 (426)
T KOG2812|consen 226 SDSTSESSTMSSDEDVKDREKEKKKKKKKKANKEKK 261 (426)
T ss_pred cccccccccccccchhhhHHHHHHHHHhhhhhhhhh
Confidence 344456667778888888888877776665554443
No 7
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=55.61 E-value=3.9 Score=36.25 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=0.0
Q ss_pred CCeeeecCCCCeeecc
Q psy9536 181 PSKIYMSLDTGRIYHP 196 (287)
Q Consensus 181 Pe~L~m~p~tGRlYHP 196 (287)
|--|.-.+.++..++.
T Consensus 21 P~YLK~~~~~~~~~~~ 36 (154)
T PF06375_consen 21 PHYLKGSPKSSKSYQS 36 (154)
T ss_dssp ----------------
T ss_pred CceecCCCCCCCCCCC
Confidence 4444444444444444
No 8
>KOG3794|consensus
Probab=37.63 E-value=18 Score=36.90 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=14.8
Q ss_pred CCCeeccCCCccceeecCCcceE
Q psy9536 131 EFPFISPCGRERNFIRCDDTPVV 153 (287)
Q Consensus 131 ~fP~lS~CG~ErNFIRCdD~PiV 153 (287)
-|+|.-.-+.++-++.=+|+||-
T Consensus 92 kFewq~~~eapRE~~ak~~~~ir 114 (453)
T KOG3794|consen 92 KFEWQRKYEAPREKLAKAPTEIR 114 (453)
T ss_pred cccccccccccHHHHhcCCcccc
Confidence 36777766666666666666553
No 9
>KOG0422|consensus
Probab=28.95 E-value=99 Score=27.76 Aligned_cols=59 Identities=25% Similarity=0.413 Sum_probs=36.4
Q ss_pred cceeecCCcceEEEeeecCC----CCc--eeEeecCCCcccccccCCeeeecCCCCeeeccCCCCCCceeE
Q psy9536 142 RNFIRCDDTPVVYTHVITTP----EGE--FFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQYGSVAL 206 (287)
Q Consensus 142 rNFIRCdD~PiVFt~L~~~~----~~~--~Lsy~~~g~~L~vpFqPe~L~m~p~tGRlYHPap~~~GgvGL 206 (287)
||+-.-|..-+++|.|+-.+ ..+ .|... =-+..||.|-++... -++|||--...|.+.|
T Consensus 23 rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~---fp~eYPFKPP~i~f~---tkiYHpNVDe~gqvCl 87 (153)
T KOG0422|consen 23 RNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEID---FPVEYPFKPPKIKFK---TKIYHPNVDEKGQVCL 87 (153)
T ss_pred hhhhcccccceeEEeEecCCCCCccCcceEEEee---CCCCCCCCCCeeeee---eeeccCCCCCCCceee
Confidence 44444455677899887532 111 22111 135679999999986 3999997554455544
No 10
>PF15535 Toxin_57: Putative toxin 57
Probab=25.95 E-value=35 Score=27.32 Aligned_cols=17 Identities=24% Similarity=0.475 Sum_probs=14.3
Q ss_pred eeeecCCCCeeeccCCC
Q psy9536 183 KIYMSLDTGRIYHPTTS 199 (287)
Q Consensus 183 ~L~m~p~tGRlYHPap~ 199 (287)
-=+++|.||+++||.+.
T Consensus 33 g~w~d~~tG~~~~pd~~ 49 (77)
T PF15535_consen 33 GGWIDPKTGNQWHPDGP 49 (77)
T ss_pred cccccCCCCceeeeCCC
Confidence 34788999999999875
No 11
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.94 E-value=55 Score=25.64 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=18.9
Q ss_pred ccccccCCCCCc---ccceeEEEEccCCcee
Q psy9536 17 GISYVQGQSPEP---NRREYFYYIDHNGMLF 44 (287)
Q Consensus 17 ~~~y~qgq~~~~---~~R~yFyyid~~G~Lf 44 (287)
++...+|+.++. ..+.|+|..|..|+.+
T Consensus 84 G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~i 114 (124)
T cd08361 84 GHEVRRGTAEECELRKVKAFIAFRDPSGNSI 114 (124)
T ss_pred CCceEEcCHHHhhcCCcceEEEEECcCCCEE
Confidence 444566665432 3467889999999965
No 12
>KOG0418|consensus
Probab=20.63 E-value=60 Score=30.24 Aligned_cols=28 Identities=39% Similarity=0.819 Sum_probs=22.3
Q ss_pred cccccCCeeeecCCCCeeeccC-CCCCCceeE
Q psy9536 176 RHPFDPSKIYMSLDTGRIYHPT-TSQYGSVAL 206 (287)
Q Consensus 176 ~vpFqPe~L~m~p~tGRlYHPa-p~~~GgvGL 206 (287)
..||.|-++... -++|||. +...|.+.|
T Consensus 64 ~YPF~pPkv~F~---TkIwHPnVSs~tGaICL 92 (200)
T KOG0418|consen 64 NYPFKPPKVKFI---TKIWHPNVSSQTGAICL 92 (200)
T ss_pred CCCCCCCceeee---eeeecCCCCcccccchh
Confidence 469999999776 5999994 556677888
No 13
>PF07901 DUF1672: Protein of unknown function (DUF1672); InterPro: IPR012873 This family is composed of hypothetical bacterial proteins of unknown function.
Probab=20.13 E-value=58 Score=31.61 Aligned_cols=18 Identities=22% Similarity=0.816 Sum_probs=14.5
Q ss_pred cceeecCCcceEEEeeec
Q psy9536 142 RNFIRCDDTPVVYTHVIT 159 (287)
Q Consensus 142 rNFIRCdD~PiVFt~L~~ 159 (287)
.=||-|||.||||+.-+.
T Consensus 67 ~V~Veced~~I~F~aSv~ 84 (277)
T PF07901_consen 67 VVYVECEDHPIVFNASVP 84 (277)
T ss_pred EEEEEecCCCceEEEEEE
Confidence 449999999999976543
Done!