Query psy9536
Match_columns 287
No_of_seqs 115 out of 125
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 22:07:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/9536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ra9_A Uncharacterized protein 78.5 3.5 0.00012 35.1 5.7 119 85-223 27-146 (150)
2 2re3_A Uncharacterized protein 55.8 20 0.0007 31.5 5.9 138 85-243 43-187 (194)
3 1rxt_A Myristoyl-, glycylpepti 29.9 11 0.00038 37.6 0.0 19 264-282 47-65 (496)
4 2jrw_A Cyclic extended PEP.1; 12.9 71 0.0024 19.9 1.0 11 189-199 12-22 (26)
5 2adz_A Alpha-1-syntrophin; pro 11.4 3.1E+02 0.01 23.7 4.9 45 106-150 116-162 (178)
6 3i08_A Neurogenic locus notch 10.8 1.8E+02 0.0062 26.1 3.4 55 211-270 152-206 (220)
7 1txk_A OPGG, glucans biosynthe 10.6 2E+02 0.0068 28.7 3.9 27 161-187 252-279 (498)
8 1ssk_A Nucleocapsid protein; s 9.6 1.5E+02 0.005 25.6 2.2 16 23-38 77-92 (158)
9 3ps5_A Tyrosine-protein phosph 9.0 70 0.0024 31.3 0.0 23 262-284 565-587 (595)
10 4f98_A Hypothetical protein; P 8.5 1.3E+02 0.0044 22.6 1.3 9 36-44 47-55 (69)
No 1
>2ra9_A Uncharacterized protein DUF1285; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.40A {Shewanella baltica}
Probab=78.48 E-value=3.5 Score=35.14 Aligned_cols=119 Identities=12% Similarity=0.138 Sum_probs=76.0
Q ss_pred ceecCCCccccccccccCccccccccccceeeeeeeeccCCCCcccCCCeeccCCCccceeecCCcceEEEeeecCCCCc
Q psy9536 85 YYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITTPEGE 164 (287)
Q Consensus 85 yyIdh~G~LFLDDsr~kNFtsc~KD~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~ErNFIRCdD~PiVFt~L~~~~~~~ 164 (287)
.-|+.+|.-|.+++++.. ++...|-+-|+. +.++| .-.=..|.-.|.++|.|+|-+.+...+...
T Consensus 27 i~I~~dG~W~y~G~pI~r--------~lVrLFssiL~~-edg~y------~LvTPvEK~~I~VEDaPfvav~~~~~~~~~ 91 (150)
T 2ra9_A 27 FDINALGDWTYLGTSLPA--------KFAKLFASILHC-IDDEY------FLITPVEKVRVQVEDAPLLIVDFERAQPHS 91 (150)
T ss_dssp EEECTTSCEEETTEECCH--------HHHHHHHTTEEE-ETTEE------EEECSSCEEEEEESSCSEEEEEEEESSTTC
T ss_pred eEECCCCcEEECCccccH--------HHHHHHHHheEe-cCCeE------EEECCCEEEeEEEeccCeEEEEEEEecCCc
Confidence 479999999999999952 235555555654 34433 344559999999999999999887654334
Q ss_pred eeEeecCCCcccccccCC-eeeecCCCCeeeccCCCCCCceeEeehHHHHHhhcceeecC
Q psy9536 165 FFCHNHAGDELRHPFDPS-KIYMSLDTGRIYHPTTSQYGSVALIQSKTAIELSKLLQFRN 223 (287)
Q Consensus 165 ~Lsy~~~g~~L~vpFqPe-~L~m~p~tGRlYHPap~~~GgvGLVrS~LAiELs~~f~f~~ 223 (287)
.|++--.- .-.++-.|+ .|.+. .+..|=.. +.|-.+++.-++--+|...++.++
T Consensus 92 ~l~f~tn~-g~~~~l~~~~~l~~~--e~~pYv~v--R~gl~Arl~R~~~Y~Lve~~~~~~ 146 (150)
T 2ra9_A 92 LLNVSTSI-GTLHHNVDIKQMKLT--DDSVYLPL--ERGLWGKLGRACYYNFVNEFNLSD 146 (150)
T ss_dssp CEEEEETT-CCEEEEECGGGCEEC--SSCEEEEC--STTCEEEECGGGHHHHHHHCCGGG
T ss_pred EEEEEEcC-CCEEEccCCCccEec--CCEEEEEe--cCCCEEEEcHHHHHHHHHHhhccC
Confidence 55444321 123444443 35553 34555433 336688888877777777666554
No 2
>2re3_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.50A {Silicibacter pomeroyi dss-3}
Probab=55.78 E-value=20 Score=31.52 Aligned_cols=138 Identities=21% Similarity=0.190 Sum_probs=86.5
Q ss_pred ceecCCCccccccccccCccccccccccceeeeeeeeccCCCCcccCCCeeccCCCccceeecCCcceEEEeeecCCC--
Q psy9536 85 YYIDHNGMLFLDDARMKNFTSCFKEKKFLVFFFQRLRRNETGLYEDEFPFISPCGRERNFIRCDDTPVVYTHVITTPE-- 162 (287)
Q Consensus 85 yyIdh~G~LFLDDsr~kNFtsc~KD~~FL~FFF~rLr~N~tgry~~~fP~lS~CG~ErNFIRCdD~PiVFt~L~~~~~-- 162 (287)
.-|+.+|.-|.+++.+.. +.+...|-+-|+..+ ++ |.-.=..|.-.|.++|.|+|-+++...+.
T Consensus 43 i~I~~dG~W~y~GspI~R-------~~lVrLFssiL~re~-d~------y~LvTPvEK~~I~VEDaPFvav~~~~~~~~~ 108 (194)
T 2re3_A 43 MRIARDGTWFYQGTPINR-------PAMVRLFSSILKREE-DR------FYLVTPVEKVGIRVDDAPFVAVDVEVAGQGR 108 (194)
T ss_dssp EEECTTSCEEETTEECCC-------HHHHHHHHTTEEEET-TE------EEEECSSCEEEEEESSCSEEEEEEEEESCGG
T ss_pred eEECCCCcEEeCCCCcCC-------HHHHHHHHHhhEecC-CE------EEEECCCEEEeEEEecCCEEEEEEEEecCCC
Confidence 478999999999999833 345555566666532 33 34455899999999999999999876432
Q ss_pred CceeEeecCCCcccccccCCe-eeec--CCCC--eeeccCCCCCCceeEeehHHHHHhhcceeecCCCCCCCeEEEECCE
Q psy9536 163 GEFFCHNHAGDELRHPFDPSK-IYMS--LDTG--RIYHPTTSQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGER 237 (287)
Q Consensus 163 ~~~Lsy~~~g~~L~vpFqPe~-L~m~--p~tG--RlYHPap~~~GgvGLVrS~LAiELs~~f~f~~~~~~~p~~f~W~G~ 237 (287)
...|++--. -.-.+.--|++ |.|. +.+| +.|=.. +.|-.++|.-++--+|....+-++ .-..+.=+|.
T Consensus 109 ~~~l~f~tn-~gd~~~~~~~hpL~~~~d~~~ge~~PYv~V--R~gL~Arl~R~~~Y~Lve~~~~~~----~~~~v~S~G~ 181 (194)
T 2re3_A 109 KQVLTFTTH-VGDSAVAGEGNPIRMAQDPATGEPAPYVHV--RAGLEALIDRKSFYRLMDLGEIED----GWFGLWSSGS 181 (194)
T ss_dssp GCEEEEEET-TSCEEECSSSSCEECCBCTTTCSBCCEEEE--ETTEEEEECHHHHHHHHTTCEEET----TEEEEEETTE
T ss_pred ceeEEEEec-CCCEEEeCCCCceEEeccCCCCCeeEEEEe--cCCCEEEEchHHHHHHHHhhcccC----CEEEEEECCE
Confidence 225655432 11234455663 7775 3344 333222 336678888888778877655443 1233444678
Q ss_pred EEEcch
Q psy9536 238 EVELDL 243 (287)
Q Consensus 238 ~~~L~~ 243 (287)
.|.|..
T Consensus 182 ~f~l~~ 187 (194)
T 2re3_A 182 FFPLMT 187 (194)
T ss_dssp EEEEEE
T ss_pred EEEccc
Confidence 888765
No 3
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta structure, unique N-myristoyltransferase fold; 3.00A {Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Probab=29.88 E-value=11 Score=37.62 Aligned_cols=19 Identities=47% Similarity=0.548 Sum_probs=0.0
Q ss_pred ccchhhhhhHHHHHHHHHh
Q psy9536 264 VLGKEKENKKKKKKKKKKE 282 (287)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~ 282 (287)
..+...+.|||+||||+++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~ 65 (496)
T 1rxt_A 47 SPANDTGAKKKKKKQKKKK 65 (496)
T ss_dssp -------------------
T ss_pred CcccccchhhhHHHhhhhc
Confidence 3455555555555555544
No 4
>2jrw_A Cyclic extended PEP.1; acetylcholine receptor, phage display, peptide cyclization, immune system; NMR {Synthetic}
Probab=12.89 E-value=71 Score=19.89 Aligned_cols=11 Identities=36% Similarity=0.615 Sum_probs=9.0
Q ss_pred CCCeeeccCCC
Q psy9536 189 DTGRIYHPTTS 199 (287)
Q Consensus 189 ~tGRlYHPap~ 199 (287)
.+.|-|||-|.
T Consensus 12 fserpyhpppp 22 (26)
T 2jrw_A 12 FSERPYHPPPP 22 (26)
T ss_dssp CCSSSCCSCSC
T ss_pred cccCCCCCCCC
Confidence 56899999875
No 5
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=11.43 E-value=3.1e+02 Score=23.69 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred cccccccceeeeeeeeccCCCCc--ccCCCeeccCCCccceeecCCc
Q psy9536 106 CFKEKKFLVFFFQRLRRNETGLY--EDEFPFISPCGRERNFIRCDDT 150 (287)
Q Consensus 106 c~KD~~FL~FFF~rLr~N~tgry--~~~fP~lS~CG~ErNFIRCdD~ 150 (287)
+.+|..-.|.-+-++-.+-++.- ..-|+..|+=|+---+|||.|.
T Consensus 116 ~~~D~~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~ 162 (178)
T 2adz_A 116 NLSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDE 162 (178)
T ss_dssp SSCSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSH
T ss_pred ccCcceeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCH
Confidence 34555554444444433333221 2258999999999999999995
No 6
>3i08_A Neurogenic locus notch homolog protein 1; SEA domain, LIN-12 notch repeat, LNR, heterodimerization domain, HD, activator, ANK repeat, calcium; 3.20A {Homo sapiens}
Probab=10.77 E-value=1.8e+02 Score=26.10 Aligned_cols=55 Identities=22% Similarity=0.233 Sum_probs=17.3
Q ss_pred HHHHhhcceeecCCCCCCCeEEEECCEEEEcchhhhhhcchhhhhhhccccccccchhhh
Q psy9536 211 TAIELSKLLQFRNGETSAPTHIVWGEREVELDLEWIRREEDEEKTETRKKDEDVLGKEKE 270 (287)
Q Consensus 211 LAiELs~~f~f~~~~~~~p~~f~W~G~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (287)
|++-|-....|...+.+.+..|-|.|+.-++...-++.- ++.+.....|||++++
T Consensus 152 ls~~Lrt~v~ik~D~~G~~mi~p~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 206 (220)
T 3i08_A 152 LSRVLHTNVVFKRDAHGQQMIFPYYGREEELRKHPIKRA-----AEGWAAPDALLGQVKA 206 (220)
T ss_dssp HHHHHTSEEEECBCTTCCBCEEEECC----------------------------------
T ss_pred HHHHheeeEEEEECCCCCEEEEecCCCchhhhhcccccc-----cccccCchhhhhhHHH
Confidence 334444456666545556899999999876554444333 3344455577887765
No 7
>1txk_A OPGG, glucans biosynthesis protein G; beta-sandwich, biosynthetic protein; 2.50A {Escherichia coli} SCOP: b.1.18.2 b.30.5.9
Probab=10.57 E-value=2e+02 Score=28.69 Aligned_cols=27 Identities=19% Similarity=0.403 Sum_probs=22.6
Q ss_pred CCCceeEeecCCCccccccc-CCeeeec
Q psy9536 161 PEGEFFCHNHAGDELRHPFD-PSKIYMS 187 (287)
Q Consensus 161 ~~~~~Lsy~~~g~~L~vpFq-Pe~L~m~ 187 (287)
++++.+.+.|+|+-|+.|-. |.+|.++
T Consensus 252 DSDGL~i~~g~GE~iWRPL~NP~~l~~S 279 (498)
T 1txk_A 252 DSNGLSIHAGNGEWIWRPLNNPKHLAVS 279 (498)
T ss_dssp SCCEEEEECTTSCEEEEECCCCSSCEEE
T ss_pred cCCceEEEcCCCcEEeeCCCCCCCceEe
Confidence 35677789999999999986 9999886
No 8
>1ssk_A Nucleocapsid protein; structural protein; NMR {Sars coronavirus} SCOP: b.148.1.1
Probab=9.62 E-value=1.5e+02 Score=25.64 Aligned_cols=16 Identities=44% Similarity=0.856 Sum_probs=12.9
Q ss_pred CCCCCcccceeEEEEc
Q psy9536 23 GQSPEPNRREYFYYID 38 (287)
Q Consensus 23 gq~~~~~~R~yFyyid 38 (287)
||.-+-..|=||||+-
T Consensus 77 G~rk~lpprW~FYYlG 92 (158)
T 1ssk_A 77 GKMKELSPRWYFYYLG 92 (158)
T ss_dssp TCCCCCCCEEEEEEES
T ss_pred CceeeCCCceEEEEeC
Confidence 6776677899999984
No 9
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP, hydrolase, signaling protein; 3.10A {Homo sapiens}
Probab=9.04 E-value=70 Score=31.25 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=0.0
Q ss_pred ccccchhhhhhHHHHHHHHHhhh
Q psy9536 262 EDVLGKEKENKKKKKKKKKKEKK 284 (287)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~ 284 (287)
|...+|++++|+.||.|+|.++|
T Consensus 565 e~~~~~~~~~k~~~~~~~~~~~~ 587 (595)
T 3ps5_A 565 ENLHTKNKREEKVKKQRSADKEK 587 (595)
T ss_dssp -----------------------
T ss_pred hhhccccccchhhhcccccchhh
No 10
>4f98_A Hypothetical protein; PF10976 family protein, DUF2790, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.26A {Pseudomonas aeruginosa}
Probab=8.46 E-value=1.3e+02 Score=22.61 Aligned_cols=9 Identities=56% Similarity=0.933 Sum_probs=0.0
Q ss_pred EEccCCcee
Q psy9536 36 YIDHNGMLF 44 (287)
Q Consensus 36 yid~~G~Lf 44 (287)
|.|++|++.
T Consensus 47 Y~DS~G~~~ 55 (69)
T 4f98_A 47 YEDHSGELH 55 (69)
T ss_dssp EECTTSCEE
T ss_pred EEcCCCCEE
Done!