RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy9536
         (287 letters)



>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 61

 Score = 26.5 bits (58), Expect = 0.74
 Identities = 9/39 (23%), Positives = 12/39 (30%), Gaps = 6/39 (15%)

Query: 138 CGRERNFIRCDDTPVVY------THVITTPEGEFFCHNH 170
           C      + CD  P  Y        +   P GE+ C   
Sbjct: 15  CKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRC 53


>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD
           {Photobacterium leiognathi [TaxId: 553611]}
          Length = 151

 Score = 28.0 bits (62), Expect = 0.81
 Identities = 9/57 (15%), Positives = 14/57 (24%)

Query: 144 FIRCDDTPVVYTHVITTPEGEFFCHNHAGDELRHPFDPSKIYMSLDTGRIYHPTTSQ 200
             +     V    +     GE   H H            K+ +    G  Y P  + 
Sbjct: 21  LSQNKYGVVFIPELADLTPGEHGFHIHQNGSCASSEKDGKVVLGGAAGGHYDPEHTN 77


>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 319

 Score = 28.0 bits (61), Expect = 1.3
 Identities = 12/63 (19%), Positives = 20/63 (31%)

Query: 221 FRNGETSAPTHIVWGEREVELDLEWIRREEDEEKTETRKKDEDVLGKEKENKKKKKKKKK 280
                 + P        +   D+E++ RE D        K  D   K  + +K K +   
Sbjct: 109 VDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAI 168

Query: 281 KEK 283
            E 
Sbjct: 169 AEH 171


>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 7/50 (14%), Positives = 15/50 (30%), Gaps = 6/50 (12%)

Query: 126 GLYEDEFPFISPCGRERNFIRCDDTPVVY------THVITTPEGEFFCHN 169
           G  +D       C +  + + C+     +        +   P  E+ C  
Sbjct: 1   GTLDDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSL 50


>d1i6pa_ c.53.2.1 (A:) beta-carbonic anhydrase {Escherichia coli
           [TaxId: 562]}
          Length = 214

 Score = 25.8 bits (56), Expect = 5.0
 Identities = 21/135 (15%), Positives = 36/135 (26%), Gaps = 5/135 (3%)

Query: 144 FIRCDDTPVVYTHVITTPEGEFFCHNHAGDELRHPFDPSK-----IYMSLDTGRIYHPTT 198
           +I C D+ V    +     GE F H +  + + H               L+   I     
Sbjct: 38  WIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGH 97

Query: 199 SQYGSVALIQSKTAIELSKLLQFRNGETSAPTHIVWGEREVELDLEWIRREEDEEKTETR 258
              G V        + L         +       + GE   E  L+ +      E+    
Sbjct: 98  YGCGGVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNL 157

Query: 259 KKDEDVLGKEKENKK 273
                +    K  +K
Sbjct: 158 GHSTIMQSAWKRGQK 172


>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 138

 Score = 25.6 bits (56), Expect = 5.4
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 247 RREEDEEKTETRKKDEDVLGKEKENKKKKKKKKKKEKK 284
           + E ++E  E          +EK+   ++ +K K+ K+
Sbjct: 101 KMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138


>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 117

 Score = 25.0 bits (54), Expect = 6.3
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 250 EDEEKTETRKKDEDVLGKEKENKKKKKKKKKK 281
           ED EK +  +   D+  K     KKK   + K
Sbjct: 83  EDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 114


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
           [TaxId: 63363]}
          Length = 101

 Score = 24.4 bits (53), Expect = 8.2
 Identities = 4/18 (22%), Positives = 6/18 (33%)

Query: 268 EKENKKKKKKKKKKEKKN 285
           E    K+       EK+ 
Sbjct: 84  EGYEMKRVGDYYVFEKRE 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0634    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,153,514
Number of extensions: 57418
Number of successful extensions: 334
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 44
Length of query: 287
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 203
Effective length of database: 1,254,276
Effective search space: 254618028
Effective search space used: 254618028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)