Query psy9538
Match_columns 117
No_of_seqs 163 out of 1413
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:09:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy9538.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/9538hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 100.0 1.2E-33 2.6E-38 205.6 11.7 114 3-117 386-499 (499)
2 PLN02169 fatty acid (omega-1)- 100.0 6.3E-33 1.4E-37 203.8 12.1 112 1-116 385-499 (500)
3 KOG0157|consensus 100.0 6.3E-32 1.4E-36 198.4 12.1 112 2-117 383-496 (497)
4 PLN03195 fatty acid omega-hydr 100.0 7.6E-32 1.6E-36 198.5 12.0 111 2-116 403-515 (516)
5 PLN00168 Cytochrome P450; Prov 100.0 2.1E-31 4.5E-36 196.4 12.2 115 1-117 397-517 (519)
6 PLN02738 carotene beta-ring hy 100.0 2.9E-31 6.3E-36 199.3 12.2 114 1-117 479-595 (633)
7 PLN02394 trans-cinnamate 4-mon 100.0 3.6E-31 7.8E-36 194.2 12.0 116 1-117 383-502 (503)
8 PLN02655 ent-kaurene oxidase 100.0 3.5E-31 7.6E-36 193.0 11.8 113 1-116 351-463 (466)
9 PLN00110 flavonoid 3',5'-hydro 100.0 2.4E-31 5.3E-36 195.5 10.5 114 1-116 379-496 (504)
10 PLN03234 cytochrome P450 83B1; 100.0 3.3E-31 7.2E-36 194.3 10.4 116 1-116 378-498 (499)
11 PLN02426 cytochrome P450, fami 100.0 6.9E-31 1.5E-35 193.1 12.1 113 2-116 385-499 (502)
12 PLN02290 cytokinin trans-hydro 100.0 4.3E-31 9.3E-36 194.4 11.0 111 1-117 404-515 (516)
13 KOG0159|consensus 100.0 3.8E-31 8.2E-36 190.9 10.1 113 1-117 406-518 (519)
14 PTZ00404 cytochrome P450; Prov 100.0 6.8E-31 1.5E-35 192.0 11.1 108 2-116 375-482 (482)
15 PF00067 p450: Cytochrome P450 100.0 3E-31 6.5E-36 189.5 8.5 111 1-113 352-463 (463)
16 KOG0156|consensus 100.0 5.2E-31 1.1E-35 192.6 9.8 111 1-116 376-487 (489)
17 PLN02500 cytochrome P450 90B1 100.0 6.7E-31 1.5E-35 192.4 9.9 109 1-115 373-488 (490)
18 PLN02183 ferulate 5-hydroxylas 100.0 8.2E-31 1.8E-35 193.1 9.9 116 1-116 393-511 (516)
19 PLN02971 tryptophan N-hydroxyl 100.0 1.1E-30 2.4E-35 193.5 10.3 114 1-116 417-533 (543)
20 PLN02936 epsilon-ring hydroxyl 100.0 3.2E-30 6.9E-35 189.0 12.0 113 1-117 367-482 (489)
21 PLN03141 3-epi-6-deoxocathaste 100.0 1.3E-30 2.9E-35 189.3 9.8 107 1-117 344-450 (452)
22 PLN02302 ent-kaurenoic acid ox 100.0 1.6E-30 3.4E-35 190.1 10.2 109 1-117 380-488 (490)
23 PLN02987 Cytochrome P450, fami 100.0 3.2E-30 6.9E-35 188.5 11.4 111 1-117 359-469 (472)
24 PLN02774 brassinosteroid-6-oxi 100.0 1.5E-30 3.3E-35 189.5 9.5 107 1-115 356-462 (463)
25 PLN02687 flavonoid 3'-monooxyg 100.0 3.3E-30 7.1E-35 190.0 11.0 115 1-116 387-508 (517)
26 PLN02196 abscisic acid 8'-hydr 100.0 2.7E-30 5.8E-35 188.3 10.3 107 1-116 356-462 (463)
27 PLN03018 homomethionine N-hydr 100.0 1.1E-29 2.4E-34 187.9 11.7 114 1-116 404-523 (534)
28 PLN03112 cytochrome P450 famil 100.0 1.3E-29 2.8E-34 186.5 10.8 115 1-116 386-507 (514)
29 PLN02966 cytochrome P450 83A1 100.0 1.2E-29 2.6E-34 186.4 10.2 88 1-88 381-470 (502)
30 KOG0684|consensus 99.9 6.6E-28 1.4E-32 171.5 8.3 112 3-117 369-485 (486)
31 COG2124 CypX Cytochrome P450 [ 99.9 1.7E-25 3.6E-30 161.3 8.0 102 1-116 309-410 (411)
32 PLN02648 allene oxide synthase 99.9 7.8E-24 1.7E-28 155.1 8.2 85 2-88 368-462 (480)
33 PF08492 SRP72: SRP72 RNA-bind 78.2 1.8 4E-05 23.0 1.6 9 32-40 43-51 (59)
34 PF09201 SRX: SRX; InterPro: 65.5 6.9 0.00015 24.6 2.3 23 58-80 18-40 (148)
35 PF12444 Sox_N: Sox developmen 63.0 5.7 0.00012 22.7 1.5 20 68-87 60-79 (84)
36 PRK14759 potassium-transportin 57.0 4.7 0.0001 18.2 0.4 6 32-37 24-29 (29)
37 PF09604 Potass_KdpF: F subuni 54.5 5.5 0.00012 17.3 0.4 6 32-37 20-25 (25)
38 KOG3506|consensus 48.9 8.4 0.00018 20.1 0.6 10 52-61 13-22 (56)
39 PF12508 DUF3714: Protein of u 47.0 12 0.00026 25.0 1.3 14 1-14 81-94 (200)
40 PF11138 DUF2911: Protein of u 44.3 14 0.00031 23.3 1.3 34 1-35 58-98 (145)
41 PF02663 FmdE: FmdE, Molybdenu 41.4 37 0.0008 20.7 2.8 23 57-79 4-26 (131)
42 TIGR02115 potass_kdpF K+-trans 39.0 6.6 0.00014 17.3 -0.6 7 32-38 19-25 (26)
43 cd04516 TBP_eukaryotes eukaryo 34.2 28 0.00061 22.7 1.5 55 30-84 29-86 (174)
44 cd00652 TBP_TLF TATA box bindi 34.2 41 0.00089 21.8 2.3 56 30-85 29-87 (174)
45 cd04518 TBP_archaea archaeal T 34.0 23 0.0005 23.1 1.1 34 30-63 29-63 (174)
46 PF01629 DUF22: Domain of unkn 32.9 21 0.00045 21.6 0.7 35 3-37 61-95 (112)
47 PLN00062 TATA-box-binding prot 31.9 33 0.00072 22.5 1.6 54 30-83 29-85 (179)
48 COG2101 SPT15 TATA-box binding 29.6 18 0.00039 23.7 0.0 35 30-64 35-70 (185)
49 PRK00394 transcription factor; 26.9 38 0.00083 22.1 1.2 33 30-62 28-61 (179)
50 PRK11901 hypothetical protein; 25.7 2.3E+02 0.005 20.7 4.9 11 30-40 2-12 (327)
51 PHA03162 hypothetical protein; 25.1 46 0.001 20.7 1.2 24 54-77 2-25 (135)
52 PF07886 BA14K: BA14K-like pro 25.1 52 0.0011 15.0 1.1 15 47-61 17-31 (31)
53 KOG3302|consensus 23.7 34 0.00074 22.8 0.5 33 30-62 50-83 (200)
54 PF14550 Peptidase_U35_2: Puta 23.5 55 0.0012 20.1 1.4 15 1-15 79-93 (122)
55 TIGR03779 Bac_Flav_CT_M Bacter 23.3 54 0.0012 24.6 1.5 15 1-15 284-298 (410)
56 PF11297 DUF3098: Protein of u 22.8 45 0.00098 18.3 0.8 12 26-37 30-41 (69)
57 COG1417 Uncharacterized conser 22.3 80 0.0017 22.2 2.1 24 3-26 90-113 (288)
58 PF13953 PapC_C: PapC C-termin 21.4 69 0.0015 17.1 1.4 13 2-14 7-19 (68)
59 PF14510 ABC_trans_N: ABC-tran 20.7 22 0.00049 19.9 -0.7 19 21-39 23-41 (85)
60 PTZ00218 40S ribosomal protein 20.6 47 0.001 17.3 0.6 13 52-64 11-25 (54)
No 1
>KOG0158|consensus
Probab=100.00 E-value=1.2e-33 Score=205.59 Aligned_cols=114 Identities=29% Similarity=0.503 Sum_probs=100.2
Q ss_pred CceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHhCe
Q psy9538 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHFK 82 (117)
Q Consensus 3 g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~f~ 82 (117)
++.||||+.|.+++|++||||++||||++|+||||.+.+....++..|+|||.|||+|+|..||.+|+|+.++.||++|+
T Consensus 386 ~~~i~kG~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~ 465 (499)
T KOG0158|consen 386 GFVIPKGTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFS 465 (499)
T ss_pred CeEeCCCCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCE
Confidence 88999999999999999999999999999999999987655678889999999999999999999999999999999999
Q ss_pred eeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 83 ILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
++..+. ............++.|++++++++++|.
T Consensus 466 ~~~~~~-t~~~~~~~~~~~~l~pk~gi~Lkl~~r~ 499 (499)
T KOG0158|consen 466 FEVCPT-TIIPLEGDPKGFTLSPKGGIWLKLEPRD 499 (499)
T ss_pred EecCCc-ccCcccCCccceeeecCCceEEEEEeCC
Confidence 999884 2122111123788899999999999985
No 2
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=6.3e-33 Score=203.77 Aligned_cols=112 Identities=24% Similarity=0.476 Sum_probs=97.6
Q ss_pred CCCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCCCC--CCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGK--YPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~--~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
++|+.|||||.|.+++|++||||++| +||++|+||||++++... ..+..|+|||+|+|.|+|++||.+|+++++|.|
T Consensus 385 ~~G~~IpkGt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~l 464 (500)
T PLN02169 385 PSGHKVDAESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEI 464 (500)
T ss_pred cCCEEECCCCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 37999999999999999999999999 899999999999654332 236789999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
+++|++++.++ .++......++.|.+++.+++++|
T Consensus 465 l~~f~~~~~~~----~~~~~~~~~~l~~~~gl~l~l~~~ 499 (500)
T PLN02169 465 IKNYDFKVIEG----HKIEAIPSILLRMKHGLKVTVTKK 499 (500)
T ss_pred HHHCEEEEcCC----CCcccccceEEecCCCEEEEEEeC
Confidence 99999999755 123334567888999999999987
No 3
>KOG0157|consensus
Probab=99.98 E-value=6.3e-32 Score=198.40 Aligned_cols=112 Identities=38% Similarity=0.632 Sum_probs=101.1
Q ss_pred CCceecCCcEEEechhhhhcCCCCCC-CCCCCCCCCCCCCCCC-CCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 2 EPKEKILDATIMNYIYAMHRDPNVYE-NPDQFNPDRFLPEKFG-KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 2 ~g~~ip~Gt~v~~~~~~~~~d~~~~~-~p~~f~P~R~~~~~~~-~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
+|+.||||+.|.++++++|||+.+|+ ||++||||||+++... ..+++.|+|||+|+|.|+|++||.+|++++++.+++
T Consensus 383 ~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~ 462 (497)
T KOG0157|consen 383 GGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLR 462 (497)
T ss_pred CCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999996 9999999999975433 456789999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
+|++++..+. . .......+++|.++++|++.+|.
T Consensus 463 ~f~~~~~~~~---~-~~~~~~~~l~~~~gl~v~~~~r~ 496 (497)
T KOG0157|consen 463 RFRIEPVGGD---K-PKPVPELTLRPKNGLKVKLRPRG 496 (497)
T ss_pred heEEEecCCC---C-ceeeeEEEEEecCCeEEEEEeCC
Confidence 9999998772 2 66667899999999999999984
No 4
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.98 E-value=7.6e-32 Score=198.46 Aligned_cols=111 Identities=25% Similarity=0.477 Sum_probs=95.7
Q ss_pred CCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 2 EPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 2 ~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
+|+.|||||.|.++.|++||||++| +||++|+||||++.+. ....+..|+|||+|+|.|+|++||.+|+++++|.|++
T Consensus 403 ~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~ 482 (516)
T PLN03195 403 DGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCR 482 (516)
T ss_pred CCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999 9999999999996432 2334567999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
+|++++.++ .+.......++.|..+++|++++|
T Consensus 483 ~f~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~r 515 (516)
T PLN03195 483 FFKFQLVPG----HPVKYRMMTILSMANGLKVTVSRR 515 (516)
T ss_pred hceeEecCC----CcceeeeeeEEecCCCEEEEEEeC
Confidence 999998755 123333445677889999999987
No 5
>PLN00168 Cytochrome P450; Provisional
Probab=99.97 E-value=2.1e-31 Score=196.38 Aligned_cols=115 Identities=24% Similarity=0.338 Sum_probs=95.9
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC------CCCCceeeccCCCCCCChhHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG------KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~------~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~ 74 (117)
++|+.|||||.|.++.+++||||++|+||++|+||||++.... ...+..++|||.|+|.|+|++||.+|+++++
T Consensus 397 ~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~l 476 (519)
T PLN00168 397 VGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFV 476 (519)
T ss_pred CCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999964211 1234679999999999999999999999999
Q ss_pred HHHHHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 75 STVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 75 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|.|+++|++++.++. ..+......++..+.+++++++++|+
T Consensus 477 a~ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~R~ 517 (519)
T PLN00168 477 ANMVREFEWKEVPGD--EVDFAEKREFTTVMAKPLRARLVPRR 517 (519)
T ss_pred HHHHHHccceeCCCC--cCChhhhceeEEeecCCcEEEEEecc
Confidence 999999999997651 22222223456677788999999985
No 6
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=2.9e-31 Score=199.26 Aligned_cols=114 Identities=20% Similarity=0.449 Sum_probs=97.4
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCC---CCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF---GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~---~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
++||.|||||.|.++.|.+||||++|+||++|+||||+.++. .......++|||.|+|.|+|++||.+|+++++|.|
T Consensus 479 i~gy~IPkGT~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~L 558 (633)
T PLN02738 479 LGGYPIKRGEDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAML 558 (633)
T ss_pred ECCEEECCCCEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999985321 12345689999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
+++|+|++..+ ..++......++.|.+++++++++|.
T Consensus 559 lr~F~~el~~~---~~~~~~~~~~~~~p~~~l~v~l~~R~ 595 (633)
T PLN02738 559 VRRFDFQLAPG---APPVKMTTGATIHTTEGLKMTVTRRT 595 (633)
T ss_pred HHhCeeEeCCC---CCCcccccceEEeeCCCcEEEEEECC
Confidence 99999999876 22344444567888889999999873
No 7
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.97 E-value=3.6e-31 Score=194.25 Aligned_cols=116 Identities=22% Similarity=0.462 Sum_probs=94.6
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~---~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
|+|+.|||||.|.++.|++|||+++|+||++|+||||++.+.. ......++|||.|+|.|+|++||.+|+++++|.|
T Consensus 383 i~g~~IP~Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~l 462 (503)
T PLN02394 383 LGGYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRL 462 (503)
T ss_pred cCCEEeCCCCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999864321 2235679999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeee-EEEeeCCceeEEEEECC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMR-VTLTFYNGIYVNLESRY 117 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~v~~~~R~ 117 (117)
+++|++++.++.+ ..+.....+ ++.....++.+++++|.
T Consensus 463 l~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~ 502 (503)
T PLN02394 463 VQNFELLPPPGQS-KIDVSEKGGQFSLHIAKHSTVVFKPRS 502 (503)
T ss_pred HHHceeEeCCCCC-cCccccccCceeeccCCCceEEeecCC
Confidence 9999999877631 123332232 45533448999999983
No 8
>PLN02655 ent-kaurene oxidase
Probab=99.97 E-value=3.5e-31 Score=193.00 Aligned_cols=113 Identities=24% Similarity=0.393 Sum_probs=97.0
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
|+|+.|||||.|+++.+++|||+++|+||++|+||||++.+........++|||.|+|.|+|++||..+++++++.||++
T Consensus 351 ~~g~~ip~gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~ 430 (466)
T PLN02655 351 LGGYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQE 430 (466)
T ss_pred cCCEEECCCCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999754333345789999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|++++.++. ........+++.+.+++.+++++|
T Consensus 431 f~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r 463 (466)
T PLN02655 431 FEWRLREGD---EEKEDTVQLTTQKLHPLHAHLKPR 463 (466)
T ss_pred eEEEeCCCC---ccccchhheeEeecCCcEEEEeec
Confidence 999997662 112223466777888999999887
No 9
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=2.4e-31 Score=195.53 Aligned_cols=114 Identities=24% Similarity=0.424 Sum_probs=95.6
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCC-C---CCceeeccCCCCCCChhHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK-Y---PKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 76 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-~---~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ 76 (117)
++|+.|||||.|.++.+++|+|+++|+||++|+||||++.+... . ....++|||+|+|.|+|++||.+|+++++|.
T Consensus 379 ~~g~~Ip~Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ 458 (504)
T PLN00110 379 VNGYYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGT 458 (504)
T ss_pred eCCEEECCCCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999643221 1 2357999999999999999999999999999
Q ss_pred HHHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 77 VLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 77 ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|+++|++++.++. ..........++.|..++.+++++|
T Consensus 459 ll~~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~r 496 (504)
T PLN00110 459 LVHSFDWKLPDGV--ELNMDEAFGLALQKAVPLSAMVTPR 496 (504)
T ss_pred HHHhceeecCCCC--ccCcccccccccccCCCceEeeccC
Confidence 9999999987652 1222223456777888999999887
No 10
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=3.3e-31 Score=194.29 Aligned_cols=116 Identities=20% Similarity=0.342 Sum_probs=96.6
Q ss_pred CCCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCCC---CCCCceeeccCCCCCCChhHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIST 76 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~---~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ 76 (117)
++|+.|||||.|.++.|++||||++| +||++|+||||+++... ......++|||+|+|.|+|+++|.+|+++++|.
T Consensus 378 ~~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ 457 (499)
T PLN03234 378 IGGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFAN 457 (499)
T ss_pred ECCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHH
Confidence 58999999999999999999999999 89999999999975432 234668999999999999999999999999999
Q ss_pred HHHhCeeeeCCCCC-CcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 77 VLRHFKILPSPRYK-TIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 77 ll~~f~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|+++|++++.++.. .........++...|.+.+.+..++|
T Consensus 458 ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
T PLN03234 458 LLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTKH 498 (499)
T ss_pred HHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeecC
Confidence 99999999987521 11223334466777888888888776
No 11
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.97 E-value=6.9e-31 Score=193.13 Aligned_cols=113 Identities=25% Similarity=0.372 Sum_probs=96.7
Q ss_pred CCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 2 EPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 2 ~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
+|+.|||||.|.++.|++|||+++| +||++|+||||++++. ....+..++|||+|+|.|+|+++|.+|++++++.|++
T Consensus 385 ~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~ 464 (502)
T PLN02426 385 DGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVR 464 (502)
T ss_pred CCcEECCCCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999 9999999999997431 1234567999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
+|++++.++. ..........++.|.+++.|++++|
T Consensus 465 ~f~~~~~~~~--~~~~~~~~~~~~~~~~gl~v~~~~r 499 (502)
T PLN02426 465 RFDIEVVGRS--NRAPRFAPGLTATVRGGLPVRVRER 499 (502)
T ss_pred HceEEEecCC--CCCCcccceeEEecCCCEEEEEEEc
Confidence 9999986541 1223444467889999999999987
No 12
>PLN02290 cytokinin trans-hydroxylase
Probab=99.97 E-value=4.3e-31 Score=194.42 Aligned_cols=111 Identities=26% Similarity=0.453 Sum_probs=95.6
Q ss_pred CCCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
|+|+.|||||.|.++.|++||||++| +||++|+||||++.. ......++|||.|+|.|+|+++|.+|++++++.|++
T Consensus 404 i~g~~IP~Gt~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~--~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~ 481 (516)
T PLN02290 404 LGDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP--FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLIS 481 (516)
T ss_pred ECCEEECCCCEEEecHHHhcCChhhhCCChhhcCccccCCCC--CCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999 899999999999532 223457999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
+|++++.++. . .......++.|.+++.|++++|+
T Consensus 482 ~f~~~~~~~~---~-~~~~~~~~~~p~~~~~~~~~~~~ 515 (516)
T PLN02290 482 KFSFTISDNY---R-HAPVVVLTIKPKYGVQVCLKPLN 515 (516)
T ss_pred hceEeeCCCc---c-cCccceeeecCCCCCeEEEEeCC
Confidence 9999987652 1 11122578889999999999985
No 13
>KOG0159|consensus
Probab=99.97 E-value=3.8e-31 Score=190.86 Aligned_cols=113 Identities=20% Similarity=0.462 Sum_probs=105.9
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
|+||.|||||.|.++.+.+.+||++|++|++|+||||++.+....+++.++|||.|+|+|+|+.+|.+|+.+.+|+|+++
T Consensus 406 L~gY~vPagT~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~ 485 (519)
T KOG0159|consen 406 LSGYHVPAGTLVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRN 485 (519)
T ss_pred eccceecCCCeEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999876577889999999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|+++.... .+++....+++.|..++.+++++|+
T Consensus 486 f~V~~~~~----~pv~~~~~~il~P~~~l~f~f~~r~ 518 (519)
T KOG0159|consen 486 FKVEFLHE----EPVEYVYRFILVPNRPLRFKFRPRN 518 (519)
T ss_pred cceeecCC----CCccceeEEEEcCCCCcceeeeeCC
Confidence 99999875 4677888999999999999999986
No 14
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=6.8e-31 Score=191.98 Aligned_cols=108 Identities=30% Similarity=0.466 Sum_probs=91.9
Q ss_pred CCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHhC
Q psy9538 2 EPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRHF 81 (117)
Q Consensus 2 ~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~f 81 (117)
+|+.|||||.|.++.+++||||++|+||++|+||||++.. ....++|||.|+|.|+|++||.+|+++++|.|+++|
T Consensus 375 ~g~~Ip~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f 450 (482)
T PTZ00404 375 GGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNF 450 (482)
T ss_pred CCeEECCCCEEEeeHHHhhCCccccCCccccCccccCCCC----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999998642 456899999999999999999999999999999999
Q ss_pred eeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 82 KILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
++++.++. ..+......+++.| .++.+++++|
T Consensus 451 ~~~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~~R 482 (482)
T PTZ00404 451 KLKSIDGK--KIDETEEYGLTLKP-NKFKVLLEKR 482 (482)
T ss_pred EEecCCCC--CCCcccccceeecC-CCceeeeecC
Confidence 99987651 11222233556665 4799999887
No 15
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.97 E-value=3e-31 Score=189.51 Aligned_cols=111 Identities=29% Similarity=0.520 Sum_probs=88.2
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
|+|+.|||||.|.++.+++|+|+++|+||++|+||||++.+. ....+..++|||.|+|.|+|++||.+|+++++|.||+
T Consensus 352 l~g~~ip~gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~ 431 (463)
T PF00067_consen 352 LGGYFIPKGTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLR 431 (463)
T ss_dssp ETTEEEETTSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999998764 3456788999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEE
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNL 113 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~ 113 (117)
+|++++.++. ..........++.|..++.|.+
T Consensus 432 ~f~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 463 (463)
T PF00067_consen 432 RFDFELVPGS--EPEPQEQQNGFLLPPKPLKVKF 463 (463)
T ss_dssp HEEEEESTTS--SGGEEECSCSSSEEESSSEEEE
T ss_pred hCEEEECCCC--CCCCccccCceEeeCCCcEEeC
Confidence 9999997652 1222222223344445677754
No 16
>KOG0156|consensus
Probab=99.97 E-value=5.2e-31 Score=192.63 Aligned_cols=111 Identities=23% Similarity=0.406 Sum_probs=93.9
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCC-CCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEK-FGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~-~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
|+||.|||||.|+++.|++||||++|+||++|+||||++++ ... ....++|||.|+|+|+|..+|.+++.+++|+|++
T Consensus 376 i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~-~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq 454 (489)
T KOG0156|consen 376 IGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKG-LDFKLIPFGSGRRICPGEGLARAELFLFLANLLQ 454 (489)
T ss_pred EcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCccccC-CceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999874 334 7889999999999999999999999999999999
Q ss_pred hCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 80 HFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
+|+|++..+ ..+..... .++....++.+...+|
T Consensus 455 ~F~w~~~~~---~~d~~e~~-~~~~~~~pl~~~~~~r 487 (489)
T KOG0156|consen 455 RFDWKLPGG---KVDMEEAG-LTLKKKKPLKAVPVPR 487 (489)
T ss_pred eeeeecCCC---CCCCcccc-cceecCCcceeeeecC
Confidence 999999876 23333332 4455555666666555
No 17
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=6.7e-31 Score=192.45 Aligned_cols=109 Identities=21% Similarity=0.379 Sum_probs=90.5
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCC-------CCCceeeccCCCCCCChhHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK-------YPKYNYQPFAAGNRKCIAYKYAMLQMKIV 73 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-------~~~~~~~pFg~G~r~C~G~~~a~~~~~~~ 73 (117)
++||.|||||.|+++.|++||||++|+||++|+||||++++... ..+..++|||+|+|.|+|++||.+|++++
T Consensus 373 ~~G~~IPkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~ 452 (490)
T PLN02500 373 YKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVF 452 (490)
T ss_pred eCCEEECCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999643221 24568999999999999999999999999
Q ss_pred HHHHHHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEE
Q psy9538 74 ISTVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLES 115 (117)
Q Consensus 74 ~a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 115 (117)
+|.|+++|++++.++. .... ... ..+.+++.|++++
T Consensus 453 la~ll~~f~~~~~~~~---~~~~--~~~-~~~~~~l~~~~~~ 488 (490)
T PLN02500 453 IHHLVLNFNWELAEAD---QAFA--FPF-VDFPKGLPIRVRR 488 (490)
T ss_pred HHHHHhccEEEEcCCC---ccee--ccc-ccCCCCceEEEEe
Confidence 9999999999997762 1111 122 2344689999875
No 18
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=8.2e-31 Score=193.09 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=91.0
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCC--CCCceeeccCCCCCCChhHHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK--YPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVL 78 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~--~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll 78 (117)
++|+.|||||.|.++.|++|||+++|+||++|+||||++++... .....|+|||+|+|.|+|++||.+|+++++|.|+
T Consensus 393 l~g~~IPkGt~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll 472 (516)
T PLN02183 393 VAGYFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLL 472 (516)
T ss_pred ECCEEECCCCEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999654321 2456899999999999999999999999999999
Q ss_pred HhCeeeeCCCCCCc-CCceeeeeEEEeeCCceeEEEEEC
Q psy9538 79 RHFKILPSPRYKTI-DDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 79 ~~f~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
++|++++.++.... .+.....+.+..+..++.+.+++|
T Consensus 473 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 511 (516)
T PLN02183 473 HCFTWELPDGMKPSELDMNDVFGLTAPRATRLVAVPTYR 511 (516)
T ss_pred heeEEEcCCCCCCCCCChhhccccccccCCCcEEEeecC
Confidence 99999987763111 111122233333344666666665
No 19
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=1.1e-30 Score=193.46 Aligned_cols=114 Identities=18% Similarity=0.275 Sum_probs=92.4
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~---~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
++||.|||||.|+++.|++|||+++|+||++|+||||+++... ...+..++|||.|+|.|+|++||..|+++++|.|
T Consensus 417 ~~G~~IpkGt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~l 496 (543)
T PLN02971 417 VAGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARL 496 (543)
T ss_pred ECCEEECCCCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999964322 1245689999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|++|++++.++.. ..+.....+ ++.-.+++.+.+++|
T Consensus 497 l~~f~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~ 533 (543)
T PLN02971 497 LQGFKWKLAGSET-RVELMESSH-DMFLSKPLVMVGELR 533 (543)
T ss_pred HHhCEEEeCCCCC-CcchhhhcC-cccccccceeeeeec
Confidence 9999999876521 223332333 442234788888876
No 20
>PLN02936 epsilon-ring hydroxylase
Probab=99.97 E-value=3.2e-30 Score=189.00 Aligned_cols=113 Identities=26% Similarity=0.520 Sum_probs=95.8
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC---CCCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG---KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~---~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
++|+.|||||.|.++.+++||||++|+||++|+||||+..+.. ...+..++|||.|+|.|+|++||.++++++++.|
T Consensus 367 ~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~l 446 (489)
T PLN02936 367 PGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVL 446 (489)
T ss_pred cCCeEECCCCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999999964321 2234589999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
+++|+++++++. ++......++.|.+++.|++++|+
T Consensus 447 l~~f~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~R~ 482 (489)
T PLN02936 447 LQRLDLELVPDQ----DIVMTTGATIHTTNGLYMTVSRRR 482 (489)
T ss_pred HHhCeEEecCCC----ccceecceEEeeCCCeEEEEEeee
Confidence 999999998651 222233566778889999999985
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.97 E-value=1.3e-30 Score=189.30 Aligned_cols=107 Identities=20% Similarity=0.333 Sum_probs=94.1
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
++||.|||||.|+++.+++|+|+++|+||++|+||||++++ ..+..|+|||+|+|.|+|++||.+|+++++|.|+++
T Consensus 344 l~g~~IPkG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~ 420 (452)
T PLN03141 344 IKGYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKD---MNNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTR 420 (452)
T ss_pred ECCEEECCCCEEEEehHhccCCchhcCCccccCcccccCCC---CCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999642 235679999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|++++.++. .. ...++.|..++.|++++|+
T Consensus 421 f~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~ 450 (452)
T PLN03141 421 FRWVAEEDT-----IV--NFPTVRMKRKLPIWVTRID 450 (452)
T ss_pred CeeecCCCC-----ee--ecccccCCCCceEEEEeCC
Confidence 999986551 11 1247788899999999984
No 22
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.97 E-value=1.6e-30 Score=190.07 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=94.4
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
++|+.|||||.|+++.+++|||+++|+||++|+||||++.. ..+..++|||+|+|.|+|+++|.+|++++++.|+++
T Consensus 380 ~~g~~Ip~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~---~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~ 456 (490)
T PLN02302 380 VNGYTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT---PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLG 456 (490)
T ss_pred ECCEEECCCCEEEeeHHHhcCCcccCCCccccChhhcCCCC---CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999642 245679999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|++++.++. . .........|.+++.+++++|+
T Consensus 457 f~~~~~~~~---~--~~~~~~~~~p~~~~~~~~~~~~ 488 (490)
T PLN02302 457 YRLERLNPG---C--KVMYLPHPRPKDNCLARITKVA 488 (490)
T ss_pred CeeEEcCCC---C--cceeCCCCCCCCCceEEEEecc
Confidence 999997651 1 2222334788899999999885
No 23
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.97 E-value=3.2e-30 Score=188.45 Aligned_cols=111 Identities=20% Similarity=0.360 Sum_probs=96.7
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
++|+.|||||.|+++.+++|+|+++|+||++|+||||++..........++|||+|+|.|+|++||.+|++++++.|+++
T Consensus 359 ~~G~~ip~Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~ 438 (472)
T PLN02987 359 VKGYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTR 438 (472)
T ss_pred ECCEEECCCCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999754333345679999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|++++.++ .++.. ..++.|.+++.+++++|.
T Consensus 439 f~~~~~~~----~~~~~--~~~~~p~~~~~~~~~~r~ 469 (472)
T PLN02987 439 FSWVPAEQ----DKLVF--FPTTRTQKRYPINVKRRD 469 (472)
T ss_pred eEEEECCC----Cceee--cccccCCCCceEEEEecc
Confidence 99999765 22332 448889999999999884
No 24
>PLN02774 brassinosteroid-6-oxidase
Probab=99.97 E-value=1.5e-30 Score=189.52 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=90.2
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
|+|+.|||||.|+++.+++||||++|+||++|+||||++.+... ...++|||+|+|.|+|++||.+|+++++|.|+++
T Consensus 356 l~g~~IpkGt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~~--~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~ 433 (463)
T PLN02774 356 LNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLES--HNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTR 433 (463)
T ss_pred ECCEEECCCCEEEEehHHhcCCcccCCChhccCchhcCCCCcCC--CccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999643211 2359999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEE
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLES 115 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~ 115 (117)
|++++.++. . .. ...++.|.++++|++++
T Consensus 434 f~~~~~~~~---~-~~--~~~~~~p~~g~~~~~~~ 462 (463)
T PLN02774 434 YRWEEVGGD---K-LM--KFPRVEAPNGLHIRVSP 462 (463)
T ss_pred ceEEECCCC---c-cc--cCCCCCCCCCceEEeee
Confidence 999997662 1 11 11234478899999874
No 25
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.97 E-value=3.3e-30 Score=189.96 Aligned_cols=115 Identities=25% Similarity=0.423 Sum_probs=93.5
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC-----CCCCceeeccCCCCCCChhHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG-----KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIS 75 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~-----~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a 75 (117)
|+|+.|||||.|.++.|++|||+++|+||++|+||||++.+.. ...+..++|||+|+|.|+|++||.+|+++++|
T Consensus 387 ~~g~~ip~Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la 466 (517)
T PLN02687 387 INGYHIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTA 466 (517)
T ss_pred ECCEEECCCCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999964321 12356899999999999999999999999999
Q ss_pred HHHHhCeeeeCCCCCCcCCce--eeeeEEEeeCCceeEEEEEC
Q psy9538 76 TVLRHFKILPSPRYKTIDDLK--YEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 76 ~ll~~f~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~v~~~~R 116 (117)
.|+++|++++.++.. ...+. ......+.+..++.+++++|
T Consensus 467 ~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~R 508 (517)
T PLN02687 467 TLVHAFDWELADGQT-PDKLNMEEAYGLTLQRAVPLMVHPRPR 508 (517)
T ss_pred HHHHhcceecCCCCC-cccCCcccccceeeecCCCeEEeeccC
Confidence 999999999876521 11222 22345555666788887776
No 26
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.97 E-value=2.7e-30 Score=188.30 Aligned_cols=107 Identities=16% Similarity=0.329 Sum_probs=93.1
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
++|+.|||||.|+++.+++|||+++|+||++|+||||++.. .+..++|||.|+|.|+|+++|.+|+++++|.|+++
T Consensus 356 i~g~~IpkGt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~ 431 (463)
T PLN02196 356 YEGYLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTK 431 (463)
T ss_pred cCCEEeCCCCEEEeeHHHhcCCchhcCCcCccChhhhcCCC----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999532 35679999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|++++.++ ..+ .....+..|++++.|+++.+
T Consensus 432 f~~~~~~~---~~~--~~~~~~~~p~~~~~~~~~~~ 462 (463)
T PLN02196 432 YRWSIVGT---SNG--IQYGPFALPQNGLPIALSRK 462 (463)
T ss_pred cEEEEcCC---CCc--eEEcccccCCCCceEEEecC
Confidence 99998765 222 33344567999999998764
No 27
>PLN03018 homomethionine N-hydroxylase
Probab=99.96 E-value=1.1e-29 Score=187.90 Aligned_cols=114 Identities=17% Similarity=0.283 Sum_probs=93.1
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCC------CCCceeeccCCCCCCChhHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK------YPKYNYQPFAAGNRKCIAYKYAMLQMKIVI 74 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~------~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~ 74 (117)
|+|+.|||||.|+++.|++|+||++|+||++|+||||++.+... ..+..++|||.|+|.|+|++||.+|+++++
T Consensus 404 i~G~~IpkGt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~l 483 (534)
T PLN03018 404 LGGYFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMML 483 (534)
T ss_pred ECCEEECCCCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999643211 245679999999999999999999999999
Q ss_pred HHHHHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 75 STVLRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 75 a~ll~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|.|+++|++++.++.. ..+.......+..| .++.+++++|
T Consensus 484 a~ll~~f~~~~~~~~~-~~~~~~~~~~~~~p-~~~~v~~~~R 523 (534)
T PLN03018 484 ARFLQGFNWKLHQDFG-PLSLEEDDASLLMA-KPLLLSVEPR 523 (534)
T ss_pred HHHHHhceEEeCCCCC-CCCccccccceecC-CCeEEEEEec
Confidence 9999999999876521 11222222444445 5899999987
No 28
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=1.3e-29 Score=186.52 Aligned_cols=115 Identities=16% Similarity=0.334 Sum_probs=94.2
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCC-----CCCCceeeccCCCCCCChhHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFG-----KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVIS 75 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~-----~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a 75 (117)
|+|+.|||||.|.++.+++||||++|+||++|+||||...... ......++|||.|+|.|+|++||.+|+++++|
T Consensus 386 i~g~~IPkGt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la 465 (514)
T PLN03112 386 INGYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALA 465 (514)
T ss_pred EcCEEeCCCCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999998653211 12346899999999999999999999999999
Q ss_pred HHHHhCeeeeCCCCCCcCCce--eeeeEEEeeCCceeEEEEEC
Q psy9538 76 TVLRHFKILPSPRYKTIDDLK--YEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 76 ~ll~~f~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~v~~~~R 116 (117)
.|+++|++++.++.. ..++. ....+.+.+.+++++++++|
T Consensus 466 ~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r 507 (514)
T PLN03112 466 RLFHCFDWSPPDGLR-PEDIDTQEVYGMTMPKAKPLRAVATPR 507 (514)
T ss_pred HHHHheeeecCCCCC-cccCCCccccCcccccCCCeEEEeecC
Confidence 999999999875421 12232 22356666777999999988
No 29
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=1.2e-29 Score=186.40 Aligned_cols=88 Identities=24% Similarity=0.491 Sum_probs=79.9
Q ss_pred CCCceecCCcEEEechhhhhcCCCCC-CCCCCCCCCCCCCCCCC-CCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHH
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVY-ENPDQFNPDRFLPEKFG-KYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVL 78 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~f~P~R~~~~~~~-~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll 78 (117)
++|+.|||||.|.++.|++||||++| +||++|+||||++.+.. ...+..++|||.|+|.|+|++||.+|+++++|.||
T Consensus 381 l~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll 460 (502)
T PLN02966 381 IAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLL 460 (502)
T ss_pred EccEEECCCCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999 99999999999965322 22456899999999999999999999999999999
Q ss_pred HhCeeeeCCC
Q psy9538 79 RHFKILPSPR 88 (117)
Q Consensus 79 ~~f~~~~~~~ 88 (117)
++|++++.++
T Consensus 461 ~~f~i~~~~~ 470 (502)
T PLN02966 461 LNFNFKLPNG 470 (502)
T ss_pred HhceeeCCCC
Confidence 9999998876
No 30
>KOG0684|consensus
Probab=99.95 E-value=6.6e-28 Score=171.53 Aligned_cols=112 Identities=27% Similarity=0.524 Sum_probs=97.4
Q ss_pred CceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCC-----CCCceeeccCCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGK-----YPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 3 g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~-----~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
.|.||+|..|++++..+|+||++|+||+.|+|+||++++.+. .-.+.++|||+|++.|||+.||++|++.++..+
T Consensus 369 ~Y~Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~ 448 (486)
T KOG0684|consen 369 EYVIPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLL 448 (486)
T ss_pred ceecCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999765443 223456999999999999999999999999999
Q ss_pred HHhCeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEECC
Q psy9538 78 LRHFKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESRY 117 (117)
Q Consensus 78 l~~f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R~ 117 (117)
|++||+++.++ ..+++++. .+++.|.++++++.+.|+
T Consensus 449 L~~fdleLid~--~~P~~d~s-~~v~~P~g~v~irYK~R~ 485 (486)
T KOG0684|consen 449 LRHFDLELIDG--PFPEVDYS-RMVMQPEGDVRIRYKRRP 485 (486)
T ss_pred HHHcceeecCC--CCCCCCHH-HhhcCCCCCceEEEeecC
Confidence 99999999986 24455543 448899999999999884
No 31
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.92 E-value=1.7e-25 Score=161.29 Aligned_cols=102 Identities=27% Similarity=0.476 Sum_probs=86.9
Q ss_pred CCCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeeccCCCCCCChhHHHHHHHHHHHHHHHHHh
Q psy9538 1 MEPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPFAAGNRKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pFg~G~r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
|+|+.||||+.|++++++.||||++|++|++|+|+||. ..++|||+|+|.|+|..||++|++++++.++++
T Consensus 309 igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~---------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r 379 (411)
T COG2124 309 LGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN---------NAHLPFGGGPHRCLGAALARLELKVALAELLRR 379 (411)
T ss_pred eCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC---------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999997 469999999999999999999999999999999
Q ss_pred CeeeeCCCCCCcCCceeeeeEEEeeCCceeEEEEEC
Q psy9538 81 FKILPSPRYKTIDDLKYEMRVTLTFYNGIYVNLESR 116 (117)
Q Consensus 81 f~~~~~~~~~~~~~~~~~~~~~~~p~~~~~v~~~~R 116 (117)
|++....+ .. ......+..+..+..+.++.+
T Consensus 380 ~~~~~~~~---~~--~~~~~~~~~~~g~~~l~v~~~ 410 (411)
T COG2124 380 FPLLLLAE---PP--PLVRRPTLVPRGGERLPVRRR 410 (411)
T ss_pred CchhhcCC---CC--CccccccccCCCcceeeeecC
Confidence 99987654 11 122345556666777777654
No 32
>PLN02648 allene oxide synthase
Probab=99.90 E-value=7.8e-24 Score=155.13 Aligned_cols=85 Identities=21% Similarity=0.473 Sum_probs=73.1
Q ss_pred CCceecCCcEEEechhhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCceeecc---------CCCCCCChhHHHHHHHHHH
Q psy9538 2 EPKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRFLPEKFGKYPKYNYQPF---------AAGNRKCIAYKYAMLQMKI 72 (117)
Q Consensus 2 ~g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~~~~~~~~~~~~~~~pF---------g~G~r~C~G~~~a~~~~~~ 72 (117)
+||.||||+.|+++.+.+|||+++|+||++|+|+||++.+.. ....+++| |+|+|.|+|++||.+|+++
T Consensus 368 ~g~~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~--~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~ 445 (480)
T PLN02648 368 AAFEIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGE--KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARL 445 (480)
T ss_pred ceEEECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCcc--ccccccccCCCcccCCCCCCCccCccHHHHHHHHHH
Confidence 489999999999999999999999999999999999864321 11234444 6778999999999999999
Q ss_pred HHHHHHHhCe-eeeCCC
Q psy9538 73 VISTVLRHFK-ILPSPR 88 (117)
Q Consensus 73 ~~a~ll~~f~-~~~~~~ 88 (117)
+++.|+++|+ +++.++
T Consensus 446 ~la~Ll~~f~~~~l~~~ 462 (480)
T PLN02648 446 FVAELFLRYDSFEIEVD 462 (480)
T ss_pred HHHHHHHHhCEEeecCC
Confidence 9999999998 998876
No 33
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=78.18 E-value=1.8 Score=23.03 Aligned_cols=9 Identities=44% Similarity=1.102 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q psy9538 32 FNPDRFLPE 40 (117)
Q Consensus 32 f~P~R~~~~ 40 (117)
-||||||.-
T Consensus 43 PDPERWLP~ 51 (59)
T PF08492_consen 43 PDPERWLPK 51 (59)
T ss_pred CCccccCch
Confidence 379999853
No 34
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=65.47 E-value=6.9 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.482 Sum_probs=16.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHh
Q psy9538 58 RKCIAYKYAMLQMKIVISTVLRH 80 (117)
Q Consensus 58 r~C~G~~~a~~~~~~~~a~ll~~ 80 (117)
-.|.|+.||...+-.+++.|+..
T Consensus 18 yN~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 18 YNCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp EETTS----HHHHHHHHHHHHHS
T ss_pred ecccchHHHHHHHHHHHHHHhcC
Confidence 35999999999999999999965
No 35
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=63.02 E-value=5.7 Score=22.74 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhCeeeeCC
Q psy9538 68 LQMKIVISTVLRHFKILPSP 87 (117)
Q Consensus 68 ~~~~~~~a~ll~~f~~~~~~ 87 (117)
.-|+-+++.+|+.|||.|.+
T Consensus 60 ~~IrdAVsqVLkGYDWtLVP 79 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVP 79 (84)
T ss_pred HHHHHHHHHHhccCCceeee
Confidence 34677889999999999875
No 36
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=57.02 E-value=4.7 Score=18.21 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=3.8
Q ss_pred CCCCCC
Q psy9538 32 FNPDRF 37 (117)
Q Consensus 32 f~P~R~ 37 (117)
++||||
T Consensus 24 lrPErF 29 (29)
T PRK14759 24 LRPERF 29 (29)
T ss_pred hCcccC
Confidence 467776
No 37
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=54.49 E-value=5.5 Score=17.35 Aligned_cols=6 Identities=50% Similarity=1.348 Sum_probs=3.5
Q ss_pred CCCCCC
Q psy9538 32 FNPDRF 37 (117)
Q Consensus 32 f~P~R~ 37 (117)
++||||
T Consensus 20 l~PErF 25 (25)
T PF09604_consen 20 LRPERF 25 (25)
T ss_pred hCcccC
Confidence 356665
No 38
>KOG3506|consensus
Probab=48.90 E-value=8.4 Score=20.13 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=8.6
Q ss_pred ccCCCCCCCh
Q psy9538 52 PFAAGNRKCI 61 (117)
Q Consensus 52 pFg~G~r~C~ 61 (117)
+||-|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999885
No 39
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=47.01 E-value=12 Score=25.01 Aligned_cols=14 Identities=0% Similarity=-0.230 Sum_probs=11.8
Q ss_pred CCCceecCCcEEEe
Q psy9538 1 MEPKEKILDATIMN 14 (117)
Q Consensus 1 i~g~~ip~Gt~v~~ 14 (117)
|+|..|||||.+.-
T Consensus 81 i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 81 IGGILIPKGTYLYG 94 (200)
T ss_pred ECCEEeCCCCEEEE
Confidence 57999999998765
No 40
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=44.31 E-value=14 Score=23.35 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=21.3
Q ss_pred CCCceecCCcEEEechh-------hhhcCCCCCCCCCCCCCC
Q psy9538 1 MEPKEKILDATIMNYIY-------AMHRDPNVYENPDQFNPD 35 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~~~-------~~~~d~~~~~~p~~f~P~ 35 (117)
|+|..||||+.-+..+- .++.+...|-. ..++|+
T Consensus 58 igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~-~~Y~~~ 98 (145)
T PF11138_consen 58 IGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA-YNYDPS 98 (145)
T ss_pred ECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc-cccCch
Confidence 68999999998776542 23555555644 334433
No 41
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=41.38 E-value=37 Score=20.72 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=17.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHH
Q psy9538 57 NRKCIAYKYAMLQMKIVISTVLR 79 (117)
Q Consensus 57 ~r~C~G~~~a~~~~~~~~a~ll~ 79 (117)
.|.|||..++......++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 36899999999999888877743
No 42
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=39.05 E-value=6.6 Score=17.27 Aligned_cols=7 Identities=43% Similarity=1.137 Sum_probs=4.3
Q ss_pred CCCCCCC
Q psy9538 32 FNPDRFL 38 (117)
Q Consensus 32 f~P~R~~ 38 (117)
++||||.
T Consensus 19 l~PErF~ 25 (26)
T TIGR02115 19 LRPERFX 25 (26)
T ss_pred hCHHhcC
Confidence 4677764
No 43
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=34.22 E-value=28 Score=22.67 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=32.9
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChh-HHHHHHH-HHHHHHHHHHhCeee
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIA-YKYAMLQ-MKIVISTVLRHFKIL 84 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G-~~~a~~~-~~~~~a~ll~~f~~~ 84 (117)
.+|+||+|=.--. -..+....+-|+.|.=.|-| +...... ..--++.+|+++.+.
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~i~~~L~~~g~~ 86 (174)
T cd04516 29 AEYNPKRFAAVIMRIREPKTTALIFSSGKMVCTGAKSEDDSKLAARKYARIIQKLGFP 86 (174)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCC
Confidence 6899998832110 12345678899999999987 3332222 233345667666554
No 44
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=34.20 E-value=41 Score=21.85 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=33.0
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhH-HHHHH-HHHHHHHHHHHhCeeee
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAY-KYAML-QMKIVISTVLRHFKILP 85 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~-~~a~~-~~~~~~a~ll~~f~~~~ 85 (117)
.+|+||+|-.--- ...+.-..+-|+.|.=.|-|. ..... ...--++.+|+++.+..
T Consensus 29 ~~YePe~fpgli~R~~~P~~t~lIf~sGKivitGaks~~~~~~a~~~~~~~L~~~g~~~ 87 (174)
T cd00652 29 AEYNPKRFPGVIMRLREPKTTALIFSSGKMVITGAKSEEDAKLAARKYARILQKLGFPV 87 (174)
T ss_pred cEECCCccceEEEEcCCCcEEEEEECCCEEEEEecCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 5899999843111 123566788999999999983 33322 22223445566655443
No 45
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=33.96 E-value=23 Score=23.06 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhH
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAY 63 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~ 63 (117)
.+|+|+||-.--- -..+.-..+-|+.|.=.|.|-
T Consensus 29 ~eY~P~~fpgli~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGLVYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEEEEEccCCcEEEEEECCCeEEEEcc
Confidence 5899999842111 123556788999999999976
No 46
>PF01629 DUF22: Domain of unknown function DUF22; InterPro: IPR002572 This region is found in 1 to 3 copies in archaeal proteins whose function is unknown. It only appears in multiple copies in proteins from Archaeoglobus fulgidus.
Probab=32.90 E-value=21 Score=21.61 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=24.2
Q ss_pred CceecCCcEEEechhhhhcCCCCCCCCCCCCCCCC
Q psy9538 3 PKEKILDATIMNYIYAMHRDPNVYENPDQFNPDRF 37 (117)
Q Consensus 3 g~~ip~Gt~v~~~~~~~~~d~~~~~~p~~f~P~R~ 37 (117)
-..||++|.+..+.+.-|....+-.=-++..|-++
T Consensus 61 ~I~iP~~tIv~p~~~~rha~G~vi~v~e~~~p~~v 95 (112)
T PF01629_consen 61 KIEIPPNTIVMPCAYMRHALGSVIDVGEEGPPRPV 95 (112)
T ss_pred EEecCCCCEEEEchHhhccCccEEEEEeccCceee
Confidence 35799999999999998887766533333334443
No 47
>PLN00062 TATA-box-binding protein; Provisional
Probab=31.91 E-value=33 Score=22.48 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=33.1
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChhH-HHHHH-HHHHHHHHHHHhCee
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIAY-KYAML-QMKIVISTVLRHFKI 83 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G~-~~a~~-~~~~~~a~ll~~f~~ 83 (117)
.+|+||+|=.--. -..+.-..+-|+.|.=.|-|. ..... ...--++.+|++..+
T Consensus 29 ~eYePe~fpgli~Rl~~Pk~t~lIF~SGKiviTGaks~e~a~~a~~~~~~~L~~lg~ 85 (179)
T PLN00062 29 AEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEHDSKLAARKYARIIQKLGF 85 (179)
T ss_pred CEECCccCcEEEEEeCCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCC
Confidence 6899999832110 123456789999999999984 33332 233344566766554
No 48
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=29.61 E-value=18 Score=23.72 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=25.1
Q ss_pred CCCCCCCCCCCC-CCCCCCceeeccCCCCCCChhHH
Q psy9538 30 DQFNPDRFLPEK-FGKYPKYNYQPFAAGNRKCIAYK 64 (117)
Q Consensus 30 ~~f~P~R~~~~~-~~~~~~~~~~pFg~G~r~C~G~~ 64 (117)
.+|+|++|=.-- .-..+..+.+-|..|.-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 479999983210 11345678899999999999865
No 49
>PRK00394 transcription factor; Reviewed
Probab=26.89 E-value=38 Score=22.14 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChh
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIA 62 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G 62 (117)
.+|+||||=.--. -..+.-..+-|..|.=.|.|
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tG 61 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTG 61 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEc
Confidence 5899999842111 12345678899999999988
No 50
>PRK11901 hypothetical protein; Reviewed
Probab=25.69 E-value=2.3e+02 Score=20.65 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q psy9538 30 DQFNPDRFLPE 40 (117)
Q Consensus 30 ~~f~P~R~~~~ 40 (117)
|||+||.=|..
T Consensus 2 DEfkpe~elkP 12 (327)
T PRK11901 2 DEFKPEDELKP 12 (327)
T ss_pred CcCCcccccCC
Confidence 46666665543
No 51
>PHA03162 hypothetical protein; Provisional
Probab=25.14 E-value=46 Score=20.74 Aligned_cols=24 Identities=25% Similarity=0.427 Sum_probs=16.8
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHH
Q psy9538 54 AAGNRKCIAYKYAMLQMKIVISTV 77 (117)
Q Consensus 54 g~G~r~C~G~~~a~~~~~~~~a~l 77 (117)
++|.+.||++....-++..=|+.|
T Consensus 2 ~~~~k~~pk~~~tmEeLaaeL~kL 25 (135)
T PHA03162 2 AGGSKKCPKAQPTMEDLAAEIAKL 25 (135)
T ss_pred CCCcCCCCccCCCHHHHHHHHHHH
Confidence 468999998887666665555544
No 52
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=25.13 E-value=52 Score=15.03 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.7
Q ss_pred CceeeccCCCCCCCh
Q psy9538 47 KYNYQPFAAGNRKCI 61 (117)
Q Consensus 47 ~~~~~pFg~G~r~C~ 61 (117)
...|+++.+..|.|.
T Consensus 17 ~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 17 DNTYQPYDGPRRFCR 31 (31)
T ss_pred CCcEeCCCCccccCc
Confidence 346999998888884
No 53
>KOG3302|consensus
Probab=23.74 E-value=34 Score=22.83 Aligned_cols=33 Identities=24% Similarity=0.501 Sum_probs=22.1
Q ss_pred CCCCCCCCCCCCC-CCCCCceeeccCCCCCCChh
Q psy9538 30 DQFNPDRFLPEKF-GKYPKYNYQPFAAGNRKCIA 62 (117)
Q Consensus 30 ~~f~P~R~~~~~~-~~~~~~~~~pFg~G~r~C~G 62 (117)
.+|+|.||-.--- ...+...-+-|++|.-.|-|
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctg 83 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTG 83 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEec
Confidence 5789999853110 12344567789999999986
No 54
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=23.52 E-value=55 Score=20.12 Aligned_cols=15 Identities=0% Similarity=-0.095 Sum_probs=11.6
Q ss_pred CCCceecCCcEEEec
Q psy9538 1 MEPKEKILDATIMNY 15 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~ 15 (117)
++|..||+||.|+.-
T Consensus 79 ~~g~~i~~GtWv~~~ 93 (122)
T PF14550_consen 79 IGGETIPKGTWVVGV 93 (122)
T ss_pred cCCeeecceEEEEEE
Confidence 467889999998654
No 55
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=23.28 E-value=54 Score=24.55 Aligned_cols=15 Identities=0% Similarity=-0.245 Sum_probs=12.1
Q ss_pred CCCceecCCcEEEec
Q psy9538 1 MEPKEKILDATIMNY 15 (117)
Q Consensus 1 i~g~~ip~Gt~v~~~ 15 (117)
|+|..|||||.|.-.
T Consensus 284 v~~~~ipkgt~l~g~ 298 (410)
T TIGR03779 284 AGDLVIPKGTVLYGT 298 (410)
T ss_pred eCCEEecCCCEEEEE
Confidence 578999999987654
No 56
>PF11297 DUF3098: Protein of unknown function (DUF3098); InterPro: IPR021448 This bacterial family of proteins has no known function.
Probab=22.80 E-value=45 Score=18.35 Aligned_cols=12 Identities=50% Similarity=1.082 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCC
Q psy9538 26 YENPDQFNPDRF 37 (117)
Q Consensus 26 ~~~p~~f~P~R~ 37 (117)
..||+.||||=|
T Consensus 30 s~dp~~fn~~If 41 (69)
T PF11297_consen 30 SDDPNVFNPDIF 41 (69)
T ss_pred CCCccccCcccc
Confidence 468889998865
No 57
>COG1417 Uncharacterized conserved protein [Function unknown]
Probab=22.27 E-value=80 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.092 Sum_probs=19.3
Q ss_pred CceecCCcEEEechhhhhcCCCCC
Q psy9538 3 PKEKILDATIMNYIYAMHRDPNVY 26 (117)
Q Consensus 3 g~~ip~Gt~v~~~~~~~~~d~~~~ 26 (117)
...||.+|.|+++.++.|.--..-
T Consensus 90 ~V~lPpnTVv~p~~~arna~G~vl 113 (288)
T COG1417 90 EVELPPNTVVVPLPYARNALGHVL 113 (288)
T ss_pred EeccCCCcEEEEchhhcCcCccEE
Confidence 457999999999999887765554
No 58
>PF13953 PapC_C: PapC C-terminal domain; PDB: 3L48_E 2XET_A 3RFZ_E 2KT6_A.
Probab=21.37 E-value=69 Score=17.08 Aligned_cols=13 Identities=15% Similarity=0.233 Sum_probs=7.7
Q ss_pred CCceecCCcEEEe
Q psy9538 2 EPKEKILDATIMN 14 (117)
Q Consensus 2 ~g~~ip~Gt~v~~ 14 (117)
+|..+|.|+.|.-
T Consensus 7 ~G~~lPfGA~v~~ 19 (68)
T PF13953_consen 7 DGKPLPFGASVSD 19 (68)
T ss_dssp TSEE--TT-EEEE
T ss_pred CCCcCCCCcEEEc
Confidence 5778899998884
No 59
>PF14510 ABC_trans_N: ABC-transporter extracellular N-terminal
Probab=20.71 E-value=22 Score=19.95 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=14.6
Q ss_pred cCCCCCCCCCCCCCCCCCC
Q psy9538 21 RDPNVYENPDQFNPDRFLP 39 (117)
Q Consensus 21 ~d~~~~~~p~~f~P~R~~~ 39 (117)
.|+..-++.+.||.++|+.
T Consensus 23 ~d~~ldp~s~~Fdl~~~lr 41 (85)
T PF14510_consen 23 SDSSLDPDSDDFDLRRWLR 41 (85)
T ss_pred CCCCCCCCCccccHHHHHH
Confidence 4556667777899999985
No 60
>PTZ00218 40S ribosomal protein S29; Provisional
Probab=20.64 E-value=47 Score=17.34 Aligned_cols=13 Identities=23% Similarity=0.782 Sum_probs=9.9
Q ss_pred ccCCCCCCCh--hHH
Q psy9538 52 PFAAGNRKCI--AYK 64 (117)
Q Consensus 52 pFg~G~r~C~--G~~ 64 (117)
-||-|.|.|. |+.
T Consensus 11 ~yGkGsr~C~vCg~~ 25 (54)
T PTZ00218 11 TYGKGSRQCRVCSNR 25 (54)
T ss_pred cCCCCCCeeecCCCc
Confidence 5889999986 553
Done!